Your job contains 1 sequence.
>047490
LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ
EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK
NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS
ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN
LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
SLVAKKDVLLADRIEEAIRKNES
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047490
(323 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara... 1428 3.5e-146 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 430 2.0e-40 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 430 2.0e-40 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 412 1.6e-38 1
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 418 2.6e-38 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 407 5.5e-38 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 407 5.5e-38 1
TIGR_CMR|GSU_0522 - symbol:GSU_0522 "ATP-dependent RNA he... 405 8.9e-38 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 406 9.2e-38 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 406 1.1e-37 1
UNIPROTKB|B4DLW8 - symbol:DDX5 "Probable ATP-dependent RN... 403 1.5e-37 1
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 403 1.5e-37 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 403 2.9e-37 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 403 2.9e-37 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 403 2.9e-37 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 403 2.9e-37 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 403 2.9e-37 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 403 2.9e-37 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 403 3.0e-37 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 403 3.1e-37 1
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 378 3.1e-37 2
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 378 3.1e-37 2
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 403 5.4e-37 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 397 6.3e-37 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 400 6.4e-37 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 396 8.0e-37 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 396 8.0e-37 1
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 398 1.1e-36 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 394 1.3e-36 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 391 2.7e-36 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 391 2.7e-36 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 391 2.7e-36 1
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 394 3.0e-36 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 390 3.5e-36 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 390 3.5e-36 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 389 4.4e-36 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 389 4.4e-36 1
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 393 6.4e-36 1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 387 7.2e-36 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 387 7.2e-36 1
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 386 9.2e-36 1
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 392 1.1e-35 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 385 1.2e-35 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 388 1.6e-35 1
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 384 1.7e-35 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 389 2.1e-35 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 387 2.7e-35 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 387 2.7e-35 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 387 2.7e-35 1
UNIPROTKB|F1NL04 - symbol:DDX4 "Uncharacterized protein" ... 381 3.1e-35 1
UNIPROTKB|I3LB32 - symbol:DDX28 "Uncharacterized protein"... 381 3.1e-35 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 385 3.4e-35 1
UNIPROTKB|E2RMU5 - symbol:DDX4 "Uncharacterized protein" ... 388 3.4e-35 1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 385 3.5e-35 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 386 3.7e-35 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 386 3.8e-35 1
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 386 3.8e-35 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 386 3.8e-35 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 386 3.8e-35 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 387 3.9e-35 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 381 4.0e-35 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 386 4.1e-35 1
UNIPROTKB|Q6GWX0 - symbol:DDX4 "Probable ATP-dependent RN... 387 4.3e-35 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 387 4.4e-35 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 387 4.5e-35 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 387 4.6e-35 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 387 4.6e-35 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 384 4.7e-35 1
UNIPROTKB|F1N991 - symbol:DDX4 "Uncharacterized protein" ... 381 4.8e-35 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 379 5.1e-35 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 379 5.1e-35 1
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de... 384 5.4e-35 1
UNIPROTKB|Q4R5S7 - symbol:DDX4 "Probable ATP-dependent RN... 386 5.6e-35 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 383 8.1e-35 1
UNIPROTKB|D6RDK4 - symbol:DDX4 "Probable ATP-dependent RN... 384 8.2e-35 1
UNIPROTKB|E2RKU0 - symbol:DDX28 "Uncharacterized protein"... 377 8.3e-35 1
UNIPROTKB|Q9NQI0 - symbol:DDX4 "Probable ATP-dependent RN... 384 9.1e-35 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 382 9.4e-35 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 378 9.5e-35 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 382 1.1e-34 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 382 1.1e-34 1
UNIPROTKB|Q8EJQ5 - symbol:rhlB "ATP-dependent RNA helicas... 376 1.1e-34 1
TIGR_CMR|SO_0407 - symbol:SO_0407 "ATP-dependent RNA heli... 376 1.1e-34 1
RGD|1311976 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box po... 376 1.1e-34 1
DICTYBASE|DDB_G0283661 - symbol:ddx3 "DEAD/DEAH box helic... 383 1.1e-34 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 384 1.2e-34 1
UNIPROTKB|F1MYC6 - symbol:DDX4 "Probable ATP-dependent RN... 383 1.2e-34 1
UNIPROTKB|Q5W5U4 - symbol:DDX4 "Probable ATP-dependent RN... 383 1.2e-34 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 380 1.4e-34 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 380 1.4e-34 1
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 380 1.5e-34 1
UNIPROTKB|D4ADV9 - symbol:Ddx4 "Probable ATP-dependent RN... 381 1.5e-34 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 379 1.5e-34 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 379 1.5e-34 1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 374 1.7e-34 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 374 1.7e-34 1
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 380 1.8e-34 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 373 2.2e-34 1
MGI|MGI:102670 - symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box ... 380 2.2e-34 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 378 2.7e-34 1
WARNING: Descriptions of 761 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 276/323 (85%), Positives = 298/323 (92%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV+RVAKSISHHARFRS +VSGG R+RPQ
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMVVGTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
RA K N QGFQTVLV+ATMT AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPA++RVEN
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV++KD +LA RIEEA+R NES
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNES 495
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 107/310 (34%), Positives = 161/310 (51%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+ + ++ + +++ PTREL+ QV + + + R+ V GG + Q L ++++
Sbjct: 64 IQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVI 123
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRIL HI +IK ++LDEAD M D GF DI L L NR
Sbjct: 124 VGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ-------- 175
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+L SAT+ ++ ++ + G ++ K + + R + +L +E K+E L+ +L
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSIL 234
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L + +VFC T V LN + HG++ +ER + + FK G
Sbjct: 235 NSELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKA--GKT 290
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ DV HVI FD P N Y+HR GRT R G +GK +L+ ++ L
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 311 ADRIEEAIRK 320
IEEAI K
Sbjct: 351 LKAIEEAINK 360
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 107/310 (34%), Positives = 161/310 (51%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+ + ++ + +++ PTREL+ QV + + + R+ V GG + Q L ++++
Sbjct: 64 IQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVI 123
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRIL HI +IK ++LDEAD M D GF DI L L NR
Sbjct: 124 VGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ-------- 175
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+L SAT+ ++ ++ + G ++ K + + R + +L +E K+E L+ +L
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSIL 234
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L + +VFC T V LN + HG++ +ER + + FK G
Sbjct: 235 NSELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKA--GKT 290
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ DV HVI FD P N Y+HR GRT R G +GK +L+ ++ L
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 311 ADRIEEAIRK 320
IEEAI K
Sbjct: 351 LKAIEEAINK 360
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 100/285 (35%), Positives = 154/285 (54%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 273
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + ++ P+ Q T + S
Sbjct: 274 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQ---TCMWS 325
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + ++ SA H +++ K + +++ LE
Sbjct: 326 ATWPKEVRQLASDFLNNYIQVNIGSMD---LSANHRITQIVEVISEFEKRDRMIKHLEKI 382
Query: 195 L-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++GNK +VF T + + FL ++ ++ HG+ QER LN+FK G P
Sbjct: 383 MENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GKSPI 440
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+V TD+A+RG+D+ D+ HVI +D+P NS DY+HR GRT R GAKG
Sbjct: 441 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKG 485
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 104/311 (33%), Positives = 161/311 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQR-QTLMFS 494
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK---LEALLQVLE-P 193
AT K +Q+L + L + + + + + + L+ L + + P
Sbjct: 495 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGP 554
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+K + ++F T + +++ FL + + HG+ +ER E L F++ GDCP
Sbjct: 555 EYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--GDCPI 612
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-LLA 311
LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+ + +
Sbjct: 613 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICS 672
Query: 312 DRIEEAIRKNE 322
D +E I +
Sbjct: 673 DLLELLIETKQ 683
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 105/311 (33%), Positives = 164/311 (52%)
Query: 12 LMKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
L + +P RA++L PTREL+ QVF ++ + ++T+V GG ++PQ + L +D
Sbjct: 79 LQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVD 138
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR+L + G + +++ VLDEAD M D GF PDIR+ L L P +
Sbjct: 139 ILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL------PESR 192
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
Q +L SAT +K +++L D+ A + + + A+AR + + LL
Sbjct: 193 --QNLLFSATFSKEIKELTDKLLHSPALIEVA--RRNTAAARITHVVHPVDRQRKRELLS 248
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ S +V+VF T + + + L + +S+ HG R+ L +FK G
Sbjct: 249 FMIGS-KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ--G 305
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+D + HVI F+ P + DY+HR GRT R G SLV+ +V
Sbjct: 306 KIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEV 365
Query: 309 LLADRIEEAIR 319
L IE+ ++
Sbjct: 366 RLLRDIEKLLQ 376
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 105/311 (33%), Positives = 164/311 (52%)
Query: 12 LMKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
L + +P RA++L PTREL+ QVF ++ + ++T+V GG ++PQ + L +D
Sbjct: 79 LQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVD 138
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR+L + G + +++ VLDEAD M D GF PDIR+ L L P +
Sbjct: 139 ILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL------PESR 192
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
Q +L SAT +K +++L D+ A + + + A+AR + + LL
Sbjct: 193 --QNLLFSATFSKEIKELTDKLLHSPALIEVA--RRNTAAARITHVVHPVDRQRKRELLS 248
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ S +V+VF T + + + L + +S+ HG R+ L +FK G
Sbjct: 249 FMIGS-KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ--G 305
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+D + HVI F+ P + DY+HR GRT R G SLV+ +V
Sbjct: 306 KIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEV 365
Query: 309 LLADRIEEAIR 319
L IE+ ++
Sbjct: 366 RLLRDIEKLLQ 376
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 104/306 (33%), Positives = 162/306 (52%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PRA++L PTREL Q+ + A+ + H F + GG Q+++L D+VVGTP
Sbjct: 73 RHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ +++ +I+ LV+DEAD MFD GF D+R F++ R P + Q ++
Sbjct: 133 GRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLR-FIL----RRLPPYDKR-QNLM 186
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT+ + V +L E + T + A + G + K LL +L
Sbjct: 187 FSATLNQRVMELA-YEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLR--- 242
Query: 196 SKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+G + M+F NT + +D LN N G+V ++R++ L FK+ G P +
Sbjct: 243 KEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKS--GKLPIM 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
+ TD+A+RGL +D V HVI +D P ++ DY+HR GRTAR GA+GK S+ + +
Sbjct: 301 IATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLEA 360
Query: 314 IEEAIR 319
I E I+
Sbjct: 361 IHEYIK 366
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 406 (148.0 bits), Expect = 9.2e-38, P = 9.2e-38
Identities = 104/308 (33%), Positives = 162/308 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 215
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 216 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 267
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K + L++++E
Sbjct: 268 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 324
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 325 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 382
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ +
Sbjct: 383 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVN 442
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 443 DLISVLRE 450
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 406 (148.0 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 104/308 (33%), Positives = 162/308 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K + L++++E
Sbjct: 276 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 332
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 333 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 390
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ +
Sbjct: 391 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVN 450
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 451 DLISVLRE 458
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 89 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 148
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 149 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 200
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 201 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 257
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 258 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 315
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 316 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 375
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 376 DLISVLRE 383
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 109/309 (35%), Positives = 165/309 (53%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K S + +S +V GGG++ Q L +D++V TPGR+
Sbjct: 93 RALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+H+ N+ +K+LVLDEAD M D GF DI K L+ +K++ QT++ SA
Sbjct: 153 LEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHK--------HQTLMFSA 204
Query: 139 TMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + V+ L ++ + I+ + +T KI A + ++ E K E L +++ +
Sbjct: 205 TFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVY-WVT---EERKRELLSELI--GV 258
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +V+VF T S+ + L + I HG+ R + L +F +G LV
Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFS--EGKVRVLV 316
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ V+ F P DY+HR GRT R G G SLV+ KD + I
Sbjct: 317 ATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENI 376
Query: 315 EEAI-RKNE 322
E+ I RK E
Sbjct: 377 EQLIERKFE 385
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 403 (146.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 403 (146.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 403 (146.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 403 (146.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 403 (146.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 403 (146.9 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 403 (146.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 403 (146.9 bits), Expect = 3.1e-37, P = 3.1e-37
Identities = 106/308 (34%), Positives = 161/308 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 170 PICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGR 229
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 230 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 281
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N K + L+++LE
Sbjct: 282 ATWPKEVRQLAEDFLKEYIQINVGALQ---LSANHNILQIVDVCNDGEKEDKLIRLLEEI 338
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+FK G P
Sbjct: 339 MSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKY--GKAPI 396
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI FD+P NS DY+HR GRTAR G + ++ A
Sbjct: 397 LIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAH 456
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 457 DLVSVLRE 464
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 378 (138.1 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 98/313 (31%), Positives = 159/313 (50%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ R PR V+L PTREL++QVF + + + ++++ ++ GG Q L + +V
Sbjct: 69 LSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIV 128
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+ H+ G+ ++ L+LDEAD M D GF ++ + N+A+ + Q
Sbjct: 129 ATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI-----NKAADHRKR--Q 181
Query: 133 TVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T+L SAT+ A V + E + + H + F L+ + + EALLQ
Sbjct: 182 TLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFY-LADNLTQKEALLQHF 240
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ K ++++F T + + + L E ++ V GE+ +R + + F G
Sbjct: 241 LVT-EKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSK--GQH 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TDLA+RGLDL +V HVI FD P ++ +++HR GRT R G KG SLV D L
Sbjct: 298 KILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLS 357
Query: 311 ADRIEEAIRKNES 323
+E +++ S
Sbjct: 358 LKNVEAFLQQKIS 370
Score = 38 (18.4 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 303 VAKKDVLLADRIEEAIRKNE 322
+ K+ L D+IE+A +K +
Sbjct: 428 IIKRKKLTPDQIEDATKKEQ 447
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 378 (138.1 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 98/313 (31%), Positives = 159/313 (50%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ R PR V+L PTREL++QVF + + + ++++ ++ GG Q L + +V
Sbjct: 69 LSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIV 128
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+ H+ G+ ++ L+LDEAD M D GF ++ + N+A+ + Q
Sbjct: 129 ATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI-----NKAADHRKR--Q 181
Query: 133 TVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T+L SAT+ A V + E + + H + F L+ + + EALLQ
Sbjct: 182 TLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFY-LADNLTQKEALLQHF 240
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ K ++++F T + + + L E ++ V GE+ +R + + F G
Sbjct: 241 LVT-EKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSK--GQH 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TDLA+RGLDL +V HVI FD P ++ +++HR GRT R G KG SLV D L
Sbjct: 298 KILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLS 357
Query: 311 ADRIEEAIRKNES 323
+E +++ S
Sbjct: 358 LKNVEAFLQQKIS 370
Score = 38 (18.4 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 303 VAKKDVLLADRIEEAIRKNE 322
+ K+ L D+IE+A +K +
Sbjct: 428 IIKRKKLTPDQIEDATKKEQ 447
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 403 (146.9 bits), Expect = 5.4e-37, P = 5.4e-37
Identities = 104/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 225 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 284
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 285 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 336
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 337 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 393
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 394 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 451
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 452 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 511
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 512 DLISVLRE 519
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 107/316 (33%), Positives = 171/316 (54%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L L++ P+R A+VL PTREL+ Q+ +++ +S ++ GG Q +L
Sbjct: 82 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+++ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI------ 195
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + +T L SATMTK VQKL + S+ ++ + + +I + S+ K
Sbjct: 196 PRDR--KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIP-SKFKDT 252
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK
Sbjct: 253 YLVYILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 310
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V
Sbjct: 311 AKARSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 305 KKDVLLADRIEEAIRK 320
+ DV L RIE I K
Sbjct: 369 QYDVELFQRIEHLIGK 384
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 400 (145.9 bits), Expect = 6.4e-37, P = 6.4e-37
Identities = 104/308 (33%), Positives = 159/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L ++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLISVLRE 462
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 107/316 (33%), Positives = 171/316 (54%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L L++ P+R A+VL PTREL+ Q+ +++ +S ++ GG Q +L
Sbjct: 108 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 167
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+V+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +
Sbjct: 168 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI------ 221
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + +T L SATMTK VQKL + S+ ++ + + ++ + S+ K
Sbjct: 222 PRDR--KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDT 278
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK
Sbjct: 279 YLVYILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 336
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V
Sbjct: 337 AKARSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 394
Query: 305 KKDVLLADRIEEAIRK 320
+ DV L RIE I K
Sbjct: 395 QYDVELFQRIEHLIGK 410
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 97/317 (30%), Positives = 154/317 (48%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA----- 186
QT+ SATM ++++ + A + + + + GS EA
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRA 239
Query: 187 -LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ K ++FCN V L + HG++ +R L+ F+
Sbjct: 240 VLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFR 299
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+G LV +D+AARGLD+ V HV FD P + DY+HR GRT R G GK +L
Sbjct: 300 --EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCI 357
Query: 305 KKDVLLADRIEEAIRKN 321
+D D IE+ I+K+
Sbjct: 358 PRDEKALDAIEKLIQKD 374
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 398 (145.2 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 99/289 (34%), Positives = 154/289 (53%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P AV++ PTREL Q+++ A+ S R +V GG Q + +++ GTP
Sbjct: 257 QEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGTP 316
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + +++LVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 317 GRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKEERQTLM 372
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L + + + + F++++ NK E LL +L
Sbjct: 373 FSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVT-KFNKREQLLDLLRTI 431
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 432 GSE--RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRS--GKCPVL 487
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTS 301
V T +A+RGLD+ DV HV+ FD P N+ID Y+HR GRT R G G+ S
Sbjct: 488 VATSVASRGLDIPDVQHVVNFDLP-NTIDDYVHRIGRTGRCGNTGRAVS 535
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 106/312 (33%), Positives = 159/312 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P +VL PTREL+ Q+ V + +S V GG PQ ++ + +D+V+G
Sbjct: 188 KKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIG 247
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+ IE + D+ ++VLDEAD M D GF +R F++ N+ Q
Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVR-FILSNTNKVR-------QM 299
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD---FIKLSGSENKLEALLQV 190
V+ SAT V KL +E ++ +A A HD I++ + + L+ +
Sbjct: 300 VMFSATWPLDVHKLA-QEFMDPNPIKVIIGSVDLA-ANHDVMQIIEVLDERARDQRLIAL 357
Query: 191 LEP-SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
LE S+ N+V+VF + ++ FL + V+ HG ER +L+ FK +G
Sbjct: 358 LEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK--EG 415
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
CP LV TD+AARGLD+ DV+ VI + FPL + DY+HR GRT R G KG + +
Sbjct: 416 SCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNK 475
Query: 309 LLADRIEEAIRK 320
LA + +R+
Sbjct: 476 GLAGELVNVLRE 487
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 106/316 (33%), Positives = 170/316 (53%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L L++ P+R A+VL PTREL+ Q+ +++ + ++ GG Q +L
Sbjct: 84 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 143
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+V+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +
Sbjct: 144 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI------ 197
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + +T L SATMTK VQKL + S+ ++ + + ++ + S+ K
Sbjct: 198 PRDR--KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDT 254
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK
Sbjct: 255 YLVYILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 312
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V
Sbjct: 313 AKARSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370
Query: 305 KKDVLLADRIEEAIRK 320
+ DV L RIE I K
Sbjct: 371 QYDVELFQRIEHLIGK 386
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 106/316 (33%), Positives = 170/316 (53%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L L++ P+R A+VL PTREL+ Q+ +++ + ++ GG Q +L
Sbjct: 82 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+V+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI------ 195
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + +T L SATMTK VQKL + S+ ++ + + ++ + S+ K
Sbjct: 196 PRDR--KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDT 252
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK
Sbjct: 253 YLVYILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 310
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V
Sbjct: 311 AKARSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 305 KKDVLLADRIEEAIRK 320
+ DV L RIE I K
Sbjct: 369 QYDVELFQRIEHLIGK 384
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 106/316 (33%), Positives = 170/316 (53%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L L++ P+R A+VL PTREL+ Q+ +++ + ++ GG Q +L
Sbjct: 82 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+V+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI------ 195
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + +T L SATMTK VQKL + S+ ++ + + ++ + S+ K
Sbjct: 196 PRDR--KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDT 252
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK
Sbjct: 253 YLVYILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 310
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V
Sbjct: 311 AKARSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 305 KKDVLLADRIEEAIRK 320
+ DV L RIE I K
Sbjct: 369 QYDVELFQRIEHLIGK 384
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 394 (143.8 bits), Expect = 3.0e-36, P = 3.0e-36
Identities = 102/306 (33%), Positives = 152/306 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P AV+L PTREL+ Q+ AK S+ + + GG + Q L D++V TPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + I++L LDEAD M D GF P IRK + + P G QT+L S
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD---MPPRGVR-QTMLFS 345
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT +Q+L + L + + + R +F++ S + L LL +
Sbjct: 346 ATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQ 405
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + +VF T + ++++L N+ + HG+ QER L FK G P LV
Sbjct: 406 DKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKT--GRTPILV 463
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + LA +
Sbjct: 464 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSL 523
Query: 315 EEAIRK 320
E +++
Sbjct: 524 AELMQE 529
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 98/288 (34%), Positives = 155/288 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 199 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 259 LIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIR-----PDRQ---TLMWS 310
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL----SGSENK---LEALLQV 190
AT K V+ + + Q + +L SA H ++ S SE + + + +V
Sbjct: 311 ATWPKEVRNMAADFLQDFIQVNIGSLD---LSANHRITQIVEVVSESEKRDRMIRHMEKV 367
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ SK NK+++F T + + FL ++ ++ HG+ ER L++FK G
Sbjct: 368 MDGKDSK-NKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GK 424
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
P +V TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GAKG
Sbjct: 425 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKG 472
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 108/307 (35%), Positives = 163/307 (53%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+R +VL PTREL+ Q+ ++ ++ ++ GG + Q L +V+ TP
Sbjct: 146 QRLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATP 205
Query: 76 GRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
GR++ H+E+ +KYLV+DEAD + + F ++ K L + P + +T
Sbjct: 206 GRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVI------PRDR--RTF 257
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SATMTK VQKL Q S+ + + + +I + S+ K L+ +L
Sbjct: 258 LFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIP-SKYKDCYLVSILN-E 315
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
L+ GN MVFC T N+++ V L I+ + HG++ +R+ LNKFK++ L
Sbjct: 316 LA-GNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRS--VL 372
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK + V + DV L R
Sbjct: 373 LATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 432
Query: 314 IEEAIRK 320
IE I K
Sbjct: 433 IEALIGK 439
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ Q + L SA H+ +++ K L+Q++E
Sbjct: 276 ATWPKEVRQLAEDFLQDYVQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 332
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 333 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 390
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 391 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 435
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 106/312 (33%), Positives = 167/312 (53%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R A+VL PTREL+ Q+ +++ S ++ GG Q +L +
Sbjct: 87 LLDAPQRLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHI 146
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++ TPGR++ H+E+ +K+LV+DEAD + + F ++ K L + P +
Sbjct: 147 IIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVI------PRDR 200
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+T L SATMTK VQKL + S+ ++ + + +I + S+ K L+
Sbjct: 201 --KTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIP-SKFKDSYLVY 257
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK +
Sbjct: 258 ILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKAR 315
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK + V + DV
Sbjct: 316 SI--LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDV 373
Query: 309 LLADRIEEAIRK 320
L RIE I K
Sbjct: 374 ELFQRIEHLIGK 385
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 393 (143.4 bits), Expect = 6.4e-36, P = 6.4e-36
Identities = 103/293 (35%), Positives = 153/293 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGR-LRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL+ Q+ + A S+ + ++ ++ GG R Q + L +++ TPG
Sbjct: 223 PCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPG 282
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ IE G + +YLVLDEAD M D GF P IRK + P T +
Sbjct: 283 RLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIV-----GQGMPPKTARTTAMF 337
Query: 137 SATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT K +Q L + + L + + + ++ E K L+++L
Sbjct: 338 SATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEME-KRSNLMEILMNEH 396
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
S+ N V+VF T + + +FLN QI +V+ HG++ ER NL F++ G CP LV
Sbjct: 397 SE-NLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRS--GQCPILV 453
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
T +AARGLD+ +V HVI +D P +S +Y+HR GRT R G G TS K+
Sbjct: 454 ATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKN 506
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 104/312 (33%), Positives = 168/312 (53%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R A+VL PTREL+ Q+ +++ + +V GG + Q L +
Sbjct: 123 LLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHI 182
Query: 71 VVGTPGRILQHIED-GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++ TPGR++ H+E+ IKYLV+DEAD + + F ++ K L L P +
Sbjct: 183 IIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVL------PRER 236
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+T L SATMTK V+KL + + S ++ + + ++ + + K L+
Sbjct: 237 --RTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIP-VKYKDVYLVH 293
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L L+ GN M+FC+T N++ L ++ + HG++ +R+ LNKFK ++
Sbjct: 294 ILN-ELA-GNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNR 351
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK +LV++ D+
Sbjct: 352 SI--LISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDI 409
Query: 309 LLADRIEEAIRK 320
L RIE + K
Sbjct: 410 ELYQRIEHLLGK 421
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 108/305 (35%), Positives = 161/305 (52%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
AVVL PTREL+ Q+ ++I RS ++ GG + Q +L+ ++V TPGR++
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 80 QHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
H+E+ ++KYL++DEAD + D FGP I K L + P+ + +T+L SA
Sbjct: 177 DHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKII------PHER--RTLLFSA 228
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASA--RHDFIKLSGSENKLEALLQVLEPSLS 196
TMT V+KL + S+ + + R+ F + L L+ L
Sbjct: 229 TMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELA---- 284
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
GN +++F T+N ++ + L S + HG++ R+ LNKFK+ G TLV
Sbjct: 285 -GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKS--GARSTLVA 341
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ VD VI +D P +S Y+HR GRTAR G GK +LV + D+ RIE
Sbjct: 342 TDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIE 401
Query: 316 EAIRK 320
I K
Sbjct: 402 ATIGK 406
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 104/315 (33%), Positives = 166/315 (52%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PR ++L PTREL+ Q+ ++ ++ + ++ +++GG D L + D++V
Sbjct: 82 KPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVA 141
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L++IE+ +I+ LVLDEAD M D GF I + + + R QT
Sbjct: 142 TPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRK--------QT 193
Query: 134 VLVSATM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN-KLEALLQVL 191
+L SAT+ + VQ +E L + K+ A H ++ L+ N KL L+ L
Sbjct: 194 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVI-HQWLHLADDANHKLNLLVNTL 252
Query: 192 EPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ +G + +VF N + + + L ++ V G++P +R + + +FK G+
Sbjct: 253 K---QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKK--GE 307
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+D + HVI FD P +D Y+HR GRT R G KG SLV D+
Sbjct: 308 VKVLVATDVAARGLDIDDISHVINFDMP-RKVDIYIHRIGRTGRAGKKGTAISLVEAHDM 366
Query: 309 LLADRIEEAIRKNES 323
+ +IE ++ S
Sbjct: 367 GVIGKIERYTKERLS 381
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 392 (143.0 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 98/291 (33%), Positives = 154/291 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ ++ +R R +V GG + Q L ++V TPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G QT++ S
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGSR-QTMMFS 430
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + + L + + + + ++ K LL +L + K
Sbjct: 431 ATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEEND-KRSFLLDLLNAT-GK 488
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + A++ FL + + HG+ ++R E L++F++ G CP +V T
Sbjct: 489 DSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRS--GRCPIMVAT 546
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS K+
Sbjct: 547 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKN 597
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 96/282 (34%), Positives = 147/282 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG PQ L +++ + TPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L ++ + YLVLDEAD M D GF P IRK + ++ P+ Q TV+ S
Sbjct: 256 LLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TVMFS 307
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K VQ+L + + +L + +++ + +K L + +E L
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD 367
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ NKV++F T + + FL ++ + HG+ ER LN+F+ G P +V
Sbjct: 368 RDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT--GKSPIMVA 425
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
TD+A+RG+D+ + HV +DFP N+ DY+HR GRT R GAKG
Sbjct: 426 TDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKG 467
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 388 (141.6 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 99/315 (31%), Positives = 165/315 (52%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM----VSGGGRLRPQEDS 63
+L + P+ +VL PTREL+ QV A++ S +A+F + GG ++ Q ++
Sbjct: 64 LLNKVTSQTTPQILVLAPTRELAVQV---AEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA 120
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L ++VGTPGR++ H+ G + ++ LVLDEAD M GF DI L
Sbjct: 121 LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWIL-----EH 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
+ P Q L SATM + ++++ ++ + ++ + H + S F+++S NK
Sbjct: 176 TPPQRQ---LALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVS-QHNK 231
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
LEAL++VLE ++G +++F T NS + L ++ HG++ Q R + +
Sbjct: 232 LEALVRVLEVENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQ 289
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
KN G L+ TD+AARGLD++ + HV+ +D P ++ Y+HR GRT R G G
Sbjct: 290 LKN--GKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILF 347
Query: 303 VAKKDVLLADRIEEA 317
V +++ + IE A
Sbjct: 348 VTSREMRMLRTIERA 362
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 384 (140.2 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 110/322 (34%), Positives = 172/322 (53%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM-VSGGGR---LRPQEDSLNNPIDMV 71
R RAVV+ P+REL+EQV VA+S+S RF + V GGGR + P D++
Sbjct: 223 RSIRAVVIVPSRELAEQVNSVARSVSE--RFGLVVKVVGGGRGVGTIKAAFARGQP-DIL 279
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNG- 128
V TPG +L+ + + ++ +LV+DEADTMFD F + K L + +R S+ G
Sbjct: 280 VSTPGALLKALWKRFISLSELYFLVIDEADTMFDDSFAGMLEKILSHTQVASRLSETIGL 339
Query: 129 -QGFQTVLVSATMTKAVQKLVDE--ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
+ Q V+V AT V ++ + + I+ +++ LH + + F+++ G++ LE
Sbjct: 340 ARKAQLVVVGATFPGGVGDVLSKATDLASISTVKSRMLHHLMPHIKQTFLRVKGADKILE 399
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L Q L+ + + V+VFCN+ ++ + + L E + + GE+PA R F+
Sbjct: 400 -LHQALKRAEQEQKGVLVFCNSASTVNWLGYSLEEMGVGHMRLQGEMPAAMREGVFRDFQ 458
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK--GKVTSL 302
G LVCTD+A+RGLD V ++ +DFP + DY+HR GR R G G+V S
Sbjct: 459 R--GKTNVLVCTDIASRGLDTQRVGLIVNYDFPESQTDYIHRAGRVGRAGGSEGGEVLSF 516
Query: 303 VAKK-DVLLADRIEEAIRKNES 323
V + DV L +IE A R+ S
Sbjct: 517 VTQPWDVELVQKIETAARRRTS 538
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 389 (142.0 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 99/291 (34%), Positives = 152/291 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ + R +V GG + Q L ++V TPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G + YLVLDEAD M D GF P IR+ + + P G QT++ S
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGLR-QTMMFS 414
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + + L + + + + ++ K LL +L + K
Sbjct: 415 ATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEEND-KRSFLLDLLNAT-GK 472
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + A++ FL + + HG+ ++R E L++F++ G CP LV T
Sbjct: 473 DSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRS--GRCPILVAT 530
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS K+
Sbjct: 531 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKN 581
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 387 (141.3 bits), Expect = 2.7e-35, P = 2.7e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 392
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 387 (141.3 bits), Expect = 2.7e-35, P = 2.7e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 392
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 387 (141.3 bits), Expect = 2.7e-35, P = 2.7e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 392
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 98/300 (32%), Positives = 156/300 (52%)
Query: 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
D K + P+ +++ PTREL Q+F A+ + R ++ GG + +
Sbjct: 232 DGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQI 291
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+++ TPGR+L IE G + ++KYLVLDEAD M D GFG D++K L+ S
Sbjct: 292 MQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKK-LISYPEMPS 350
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K Q T++ SAT + VQ+L E + L + + + +++ +K
Sbjct: 351 KDRRQ---TLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRL-SK 406
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
+ L+++L+ + G + MVF +T + + FL + + + + HG+ +ER L
Sbjct: 407 RDKLIEILQST--GGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRD 464
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSI-DYLHRTGRTARMGAKGKVTS 301
F++ G C LV T +A+RGLD++ V HVI FD P N+I DY+HR GRT R G GK S
Sbjct: 465 FRS--GKCQILVATSVASRGLDIENVQHVINFDLP-NTIEDYVHRIGRTGRCGNTGKAVS 521
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 108/326 (33%), Positives = 172/326 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG---GRLRPQEDSLNNPIDMVVGT 74
PR +VL P+REL+EQV VA+ + + + GG R+R Q S P D++V T
Sbjct: 204 PRGLVLVPSRELAEQVRAVAQPLGSSLGLQVRELGGGHGMSRIRLQL-SKQPPADVLVAT 262
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG--QGF- 131
PG + + ++ + + +LVLDEADT+ D F ++ +++ + A P F
Sbjct: 263 PGALWKGLKSQLISLEQLSFLVLDEADTLLDESF-LELVDYILEKSHIAEGPADLKDPFN 321
Query: 132 ---QTVLVSATMTKAVQKLVDEE-C-QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
Q VLV AT + V +L+ + C + + +S LH + + F++L G+E K+
Sbjct: 322 PKAQLVLVGATFPEGVSQLLSKAACLDSLTTITSSKLHCIMPHVKQTFMRLKGAE-KVTE 380
Query: 187 LLQVLEPS-----LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
L+Q+L+ V+VFCN+ ++ + + L++++I + G++PA R
Sbjct: 381 LVQILKQHDRAYRTGSAGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIF 440
Query: 242 NKFKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GK 298
F+ D L+CTD+A+RGLD V+ VI +DFPL DY+HR GR R+G+K G
Sbjct: 441 QSFQRGSQDI--LLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSKVPGT 498
Query: 299 VTSLVAKK-DVLLADRIEEAIRKNES 323
V S V DV L +IE A R+ S
Sbjct: 499 VISFVTHPWDVSLVQKIELAARRRRS 524
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 385 (140.6 bits), Expect = 3.4e-35, P = 3.4e-35
Identities = 101/295 (34%), Positives = 149/295 (50%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ A +R T + GG PQ L D+VV TPGR
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR 290
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + I YLVLDEAD M D GF P IRK + + + QT++ +
Sbjct: 291 LNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR--------QTLMYT 342
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS---ARH-DFIKLSGSENKLEALLQVLEP 193
AT K V+K+ + A + + + +A+ +H + + + +LE +L+ EP
Sbjct: 343 ATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP 402
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
G+KV++FC+T + L Q HG+ ER LN+F++ G P
Sbjct: 403 ----GSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRS--GRTPV 455
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TD+AARGLD+ D+ V+ +DFP DY+HR GRT R GA G+ + +D
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 388 (141.6 bits), Expect = 3.4e-35, P = 3.4e-35
Identities = 95/302 (31%), Positives = 156/302 (51%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
+ HD + + P +++ PTREL Q++ A+ S R+ ++ GG +L
Sbjct: 351 MMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGYSI 410
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+ +++ TPGR++ I + +KYLVLDEAD M D GFGP+++K + +
Sbjct: 411 RQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLI----S 466
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGS 180
P+ + QT++ SAT + +Q+L E + + + + +++ G
Sbjct: 467 CPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQ 525
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+K E L+++L S+ + MVF T + + FL + +IST + HG+ +ER +
Sbjct: 526 YSKREKLVEILR-SIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQA 583
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L F+ G CP LV T +AARGLD++ V HVI FD P +Y+HR GRT R G G+
Sbjct: 584 LGDFRC--GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRA 641
Query: 300 TS 301
S
Sbjct: 642 IS 643
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 385 (140.6 bits), Expect = 3.5e-35, P = 3.5e-35
Identities = 101/307 (32%), Positives = 154/307 (50%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PR +VL PTREL+ QV K + +F S + GG + PQ ++ +D++V
Sbjct: 77 PRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVAC 136
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L G++ ++ LVLDEAD M D GF D++K L L + Q +
Sbjct: 137 PGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR--------QNL 188
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT +K + L + + + + + +L S + ALL L +
Sbjct: 189 LFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKR--ALLAHLITA 246
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+V+VF T + + + +L+++ +S V HG R + L FK G+ L
Sbjct: 247 -GAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKA--GEVRIL 303
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + HV+ F+ P DY+HR GRT R G G+ SLVA + L
Sbjct: 304 VATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKS 363
Query: 314 IEEAIRK 320
IE ++
Sbjct: 364 IERMTKQ 370
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 386 (140.9 bits), Expect = 3.7e-35, P = 3.7e-35
Identities = 96/292 (32%), Positives = 154/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 324
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 325 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 380
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + ++ K LL +L + K
Sbjct: 381 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEAD-KRSFLLDLLNAT-GK 438
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ ++VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 439 DSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 496
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 497 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 548
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 386 (140.9 bits), Expect = 3.8e-35, P = 3.8e-35
Identities = 96/292 (32%), Positives = 154/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 325
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 381
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + ++ K LL +L + K
Sbjct: 382 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEAD-KRSFLLDLLNAT-GK 439
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ ++VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 440 DSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 497
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 549
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 386 (140.9 bits), Expect = 3.8e-35, P = 3.8e-35
Identities = 97/292 (33%), Positives = 153/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 325
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 381
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + S+ K LL +L + K
Sbjct: 382 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNAT-GK 439
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 440 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 497
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 549
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 386 (140.9 bits), Expect = 3.8e-35, P = 3.8e-35
Identities = 97/292 (33%), Positives = 153/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 382
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + S+ K LL +L + K
Sbjct: 383 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNAT-GK 440
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 498
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 386 (140.9 bits), Expect = 3.8e-35, P = 3.8e-35
Identities = 97/292 (33%), Positives = 153/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 382
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + S+ K LL +L + K
Sbjct: 383 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNAT-GK 440
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 498
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 387 (141.3 bits), Expect = 3.9e-35, P = 3.9e-35
Identities = 98/293 (33%), Positives = 154/293 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 309 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 368
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 369 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 424
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K +Q L + L + + + + S+ K LL +L + S
Sbjct: 425 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNATESG 483
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K + +VF T + +++ FL + + HG+ ++R E L++F++ G P LV
Sbjct: 484 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVA 541
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
T +AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 542 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 594
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 381 (139.2 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 104/310 (33%), Positives = 156/310 (50%)
Query: 11 VLMKPR-RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L PR R R +VL PTREL+ Q+ +S+ AR R + GG + Q L + +D
Sbjct: 63 MLSTPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVD 122
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+VV PGR+L HI G + ++ L++DEAD MFD GF PDI+ L L Q
Sbjct: 123 VVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLV--------Q 174
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+L SATM V+KL E ++ T +S H + + K L++
Sbjct: 175 PHQTLLFSATMPPEVRKLTLETQTNPVTIQIGT-QAPASSVSHSVYPVKNHQ-KTPLLIE 232
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L+ + +K V++F T + + ++ +T + G + R + F+ G
Sbjct: 233 ILKTTETKS--VLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRR--G 288
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LV TD+AARGLD+D + HVI +D P DY HR GRT R G+ SLV +D
Sbjct: 289 NFKILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDG 348
Query: 309 LLADRIEEAI 318
+ I++ I
Sbjct: 349 DMVRDIQKLI 358
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 386 (140.9 bits), Expect = 4.1e-35, P = 4.1e-35
Identities = 101/285 (35%), Positives = 154/285 (54%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST V GG PQ L +++ + TPGR
Sbjct: 169 PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGR 228
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 229 LIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 280
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG--SENKLE-ALLQVLEPS 194
AT K V++L ++ Q + L SA H+ +++ EN+ + L+Q++E
Sbjct: 281 ATWPKEVRQLAEDFLQDYVQINIGALE---LSANHNILQIVDVCMENEKDNKLIQLMEEI 337
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER L +F++ G P
Sbjct: 338 MAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRS--GKAPI 395
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 396 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 440
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 387 (141.3 bits), Expect = 4.3e-35, P = 4.3e-35
Identities = 99/304 (32%), Positives = 158/304 (51%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
+ HD + + P +++ PTREL Q++ A+ S R+ ++ GG +L
Sbjct: 348 MMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSI 407
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+ +++ TPGR++ I + IKYLVLDEAD M D GFGP+++K + +
Sbjct: 408 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----S 463
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS--- 178
P+ + QT++ SAT + +Q+L E + +L + ++ A D +
Sbjct: 464 CPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKS-NYLFVAV--GQVGGACRDVQQADLQV 520
Query: 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
G +K E LL++L ++ + MVF T + + FL + +IST + HG+ +ER
Sbjct: 521 GQYSKREKLLEILR-NIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRERE 578
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L F+ G CP LV T +AARGLD++ V HVI FD P +Y+HR GRT R G G
Sbjct: 579 QALGDFRF--GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 636
Query: 298 KVTS 301
+ S
Sbjct: 637 RAIS 640
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 387 (141.3 bits), Expect = 4.4e-35, P = 4.4e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 245 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 304
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 305 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 356
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 357 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 413
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 414 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 471
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 472 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 516
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 387 (141.3 bits), Expect = 4.5e-35, P = 4.5e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 245 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 304
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 305 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 356
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 357 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 413
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 414 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 471
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 472 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 516
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 387 (141.3 bits), Expect = 4.6e-35, P = 4.6e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 247 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 306
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 307 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 358
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 359 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 415
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 416 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 473
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 474 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 518
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 387 (141.3 bits), Expect = 4.6e-35, P = 4.6e-35
Identities = 99/285 (34%), Positives = 152/285 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 247 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 306
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 307 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 358
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 359 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 415
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 416 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 473
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG
Sbjct: 474 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 518
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 384 (140.2 bits), Expect = 4.7e-35, P = 4.7e-35
Identities = 96/307 (31%), Positives = 156/307 (50%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PR +VL PTREL+ QV K + +F S + GG + PQ +++ +D++V
Sbjct: 77 PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVAC 136
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L G++ ++ LVLDEAD M D GF D++K L L + Q +
Sbjct: 137 PGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR--------QNL 188
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + + L + + + + + +L+ + +K L ++ +
Sbjct: 189 LFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAAN-HKRSLLAHLI--T 245
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +V+VF T + + + +L+++ ++ V HG R + L FK GD +
Sbjct: 246 VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA--GDVRIM 303
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + HV+ F+ P DY+HR GRT R G G+ SLVA + L
Sbjct: 304 VATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKS 363
Query: 314 IEEAIRK 320
IE ++
Sbjct: 364 IERMTKQ 370
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 381 (139.2 bits), Expect = 4.8e-35, P = 4.8e-35
Identities = 98/300 (32%), Positives = 156/300 (52%)
Query: 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
D K + P+ +++ PTREL Q+F A+ + R ++ GG + +
Sbjct: 232 DGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQI 291
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+++ TPGR+L IE G + ++KYLVLDEAD M D GFG D++K L+ S
Sbjct: 292 MQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKK-LISYPEMPS 350
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K Q T++ SAT + VQ+L E + L + + + +++ +K
Sbjct: 351 KDRRQ---TLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRL-SK 406
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
+ L+++L+ + G + MVF +T + + FL + + + + HG+ +ER L
Sbjct: 407 RDKLIEILQST--GGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRD 464
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSI-DYLHRTGRTARMGAKGKVTS 301
F++ G C LV T +A+RGLD++ V HVI FD P N+I DY+HR GRT R G GK S
Sbjct: 465 FRS--GKCQILVATSVASRGLDIENVQHVINFDLP-NTIEDYVHRIGRTGRCGNTGKAVS 521
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 111/315 (35%), Positives = 163/315 (51%)
Query: 14 KPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
K RRP RA++L PTREL+ Q+ + S + RS +V GG + PQ L +D++V
Sbjct: 71 KGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLV 130
Query: 73 GTPGRILQHIEDGNMVYGD-IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
TPGR+L +E N V D ++ LVLDEAD M D GF DIR+ L L +
Sbjct: 131 ATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKR-------- 181
Query: 132 QTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q +L SAT + ++ L ++ I R +T ++ H F+ + K E L
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVH-FVD---KKRKRELLS 237
Query: 189 QVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
++ KGN +V+VF T + + + LN++ I + HG R L FK+
Sbjct: 238 HMI----GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
GD LV TD+AARGLD++ + HV+ ++ P DY+HR GRT R A G+ SLV
Sbjct: 294 --GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCV 351
Query: 306 KDVLLADRIEEAIRK 320
+ L IE+ ++K
Sbjct: 352 DEHKLLRDIEKLLKK 366
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 101/308 (32%), Positives = 157/308 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + RA+VL PTREL+ QV ++ + RS +V GG + PQ + L + +D++V
Sbjct: 70 KSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L ++ + + ++ LVLDEAD M D GF DI+K L L + Q
Sbjct: 130 TPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR--------QN 181
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
++ SAT + +++L + T A+ +I K L+Q+++
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISV-TPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+V+VF T + + + L + +IS HG R + L FK+ G+
Sbjct: 241 E--NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKS--GEVRV 296
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+D + V+ FD P DY+HR GRT R GA G+ SLV+ +++ L
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLK 356
Query: 313 RIEEAIRK 320
IE I +
Sbjct: 357 DIERLINR 364
>UNIPROTKB|Q0DVX2 [details] [associations]
symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006968 "cellular defense
response" evidence=IDA] [GO:0009817 "defense response to fungus,
incompatible interaction" evidence=IDA] [GO:0071369 "cellular
response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
"cellular response to salicylic acid stimulus" evidence=IEP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
Length = 641
Score = 384 (140.2 bits), Expect = 5.4e-35, P = 5.4e-35
Identities = 105/323 (32%), Positives = 174/323 (53%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
PR PR VVL PT EL+ QV +SIS FRS + +GG R + Q +SL+ +D+++
Sbjct: 315 PRNPRVVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIA 374
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR L +++G + +++ +VLDE D ++ + L+ + + Q
Sbjct: 375 TPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTT-------QY 427
Query: 134 VLVSATMTKAV-QKLVDE--ECQGI----AHLRTSTLHKKIASARHDFIKLSGSE----N 182
+ V+AT+ + K+V+ +C+ I H +S L + + D + E N
Sbjct: 428 LFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSN 487
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-----NQISTVNYHGEVPAQER 237
K AL++++E S + K ++FCN + + R V++ L +QI + +H + Q+R
Sbjct: 488 KKSALVKIIEESPVR--KTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQR 545
Query: 238 VENLNKFKNED-GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
+ N+ +F N+ D LVCTD A+RG+D +V+HV++FD+P + +Y+ R GRTAR GA
Sbjct: 546 IANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTAR-GA 604
Query: 296 KGKVTSLV--AKKDVLLADRIEE 316
G + V K V LA R+ E
Sbjct: 605 SGNGKAFVFAVGKQVSLARRVME 627
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 386 (140.9 bits), Expect = 5.6e-35, P = 5.6e-35
Identities = 95/302 (31%), Positives = 156/302 (51%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
+ HD + + P +++ PTREL Q++ A+ S R+ ++ GG +L
Sbjct: 351 MMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSI 410
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+ +++ TPGR++ I + IKYLVLDEAD M D GFGP+++K + +
Sbjct: 411 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----S 466
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGS 180
P+ + QT++ SAT + +Q+L E + + + + +++ G
Sbjct: 467 CPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV-GQ 525
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+K E L+++L ++ + MVF T + + FL + +IST + HG+ +ER +
Sbjct: 526 FSKREKLVEILR-NIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQA 583
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L F+ G CP LV T +AARGLD++ V HVI FD P +Y+HR GRT R G G+
Sbjct: 584 LGDFRC--GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRA 641
Query: 300 TS 301
S
Sbjct: 642 IS 643
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 383 (139.9 bits), Expect = 8.1e-35, P = 8.1e-35
Identities = 97/291 (33%), Positives = 152/291 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 382
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + S+ K LL +L + K
Sbjct: 383 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNAT-GK 440
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 498
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS +++
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 549
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 384 (140.2 bits), Expect = 8.2e-35, P = 8.2e-35
Identities = 95/302 (31%), Positives = 156/302 (51%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
+ HD + + P +++ PTREL Q++ A+ S R+ ++ GG +L
Sbjct: 330 MMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSI 389
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+ +++ TPGR++ I + IKYLVLDEAD M D GFGP+++K + +
Sbjct: 390 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----S 445
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGS 180
P+ + QT++ SAT + +Q+L E + + + + +++ G
Sbjct: 446 CPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV-GQ 504
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+K E L+++L ++ + MVF T + + FL + +IST + HG+ +ER +
Sbjct: 505 FSKREKLVEILR-NIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQA 562
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L F+ G CP LV T +AARGLD++ V HVI FD P +Y+HR GRT R G G+
Sbjct: 563 LGDFRF--GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRA 620
Query: 300 TS 301
S
Sbjct: 621 IS 622
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 106/326 (32%), Positives = 172/326 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG---GRLRPQEDSLNNPIDMVVGT 74
PR +VL P+REL+EQV VA+ + R + GG R+R Q S P D++V T
Sbjct: 200 PRGLVLVPSRELAEQVRAVAQPLGISLGLRVRELGGGHGMNRIRVQL-SKQPPADVLVAT 258
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG--QGF- 131
PG + + ++ + + +LVLDEADT+ D F ++ +++ + A P+ F
Sbjct: 259 PGALWKALKSHLVSLKQLSFLVLDEADTLLDESF-LELVDYILQKSHIAEDPDDLKDPFN 317
Query: 132 ---QTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
Q VLV AT + V +L+ + + + +S LH + R F++L G+E K+
Sbjct: 318 PKAQLVLVGATFPEGVSQLLSKVASPDSLTTITSSKLHCIMPHVRQTFMRLKGAE-KVTE 376
Query: 187 LLQVLEPS-----LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
L+Q+L+ ++VFCN+ ++ + + L++++I + G++PA R
Sbjct: 377 LVQILKQHDRAYRTGPSGTILVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIF 436
Query: 242 NKFKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GK 298
F+ D L+CTD+A+RGLD V+ V+ +DFPL DY+HR GR R+G++ G
Sbjct: 437 QCFQKGSRDI--LLCTDIASRGLDSTHVELVVNYDFPLTLQDYIHRAGRVGRVGSEVPGT 494
Query: 299 VTSLVAKK-DVLLADRIEEAIRKNES 323
V S V DV L +IE A R+ S
Sbjct: 495 VISFVTHPWDVSLVQKIELAARRRRS 520
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 384 (140.2 bits), Expect = 9.1e-35, P = 9.1e-35
Identities = 95/302 (31%), Positives = 156/302 (51%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
+ HD + + P +++ PTREL Q++ A+ S R+ ++ GG +L
Sbjct: 350 MMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSI 409
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+ +++ TPGR++ I + IKYLVLDEAD M D GFGP+++K + +
Sbjct: 410 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----S 465
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGS 180
P+ + QT++ SAT + +Q+L E + + + + +++ G
Sbjct: 466 CPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQV-GQ 524
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+K E L+++L ++ + MVF T + + FL + +IST + HG+ +ER +
Sbjct: 525 FSKREKLVEILR-NIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQA 582
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L F+ G CP LV T +AARGLD++ V HVI FD P +Y+HR GRT R G G+
Sbjct: 583 LGDFRF--GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRA 640
Query: 300 TS 301
S
Sbjct: 641 IS 642
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 382 (139.5 bits), Expect = 9.4e-35, P = 9.4e-35
Identities = 100/308 (32%), Positives = 153/308 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P AV+L PTREL+ Q+ A+ S+ + + GG + Q L +D++V TPGR
Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGR 284
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E G + +++L LDEAD M D GF P IRK + + P G QT+L S
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMD---MPPPGVR-QTMLFS 340
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT + +Q+L + L + + R +F+ S + L LL +
Sbjct: 341 ATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENG 400
Query: 196 SKGNKVM--VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++G + + VF T + +++++L N HG+ QER L FK G P
Sbjct: 401 NQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKT--GRTPI 458
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + +A
Sbjct: 459 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAK 518
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 519 PLAELMQE 526
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 378 (138.1 bits), Expect = 9.5e-35, P = 9.5e-35
Identities = 98/305 (32%), Positives = 156/305 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L +++ + TPGR
Sbjct: 201 PIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGR 260
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 261 LIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 312
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K VQ+L + + +L + +++ +K + L++ LE +L+
Sbjct: 313 ATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNE 372
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK++VF +T + + +L + + HG+ ER L++F+ G +V
Sbjct: 373 KDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRK--GKTSIMVA 430
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARG+D+ + HVI +D P N DY+HR GRT R GA G S + + L +
Sbjct: 431 TDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLC 490
Query: 316 EAIRK 320
+ +R+
Sbjct: 491 KIMRE 495
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 382 (139.5 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 96/292 (32%), Positives = 152/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGR 326
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 382
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + K
Sbjct: 383 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEID-KRSFLLDLLNAT-GK 440
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 498
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 382 (139.5 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 96/292 (32%), Positives = 152/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGR 326
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 382
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + K
Sbjct: 383 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEID-KRSFLLDLLNAT-GK 440
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 498
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 102/303 (33%), Positives = 156/303 (51%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+++ PTREL+ Q+ + A ++ H R + +V GG Q L+ +D+++GT G
Sbjct: 84 QPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ ++ G + I+ +VLDEAD MFD GF DIR FL PN +L
Sbjct: 144 RIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR-FLF-----RRMPNADQRLNMLF 197
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ VQ+L + + + K + + + S E+K+ LL ++E
Sbjct: 198 SATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPS-QEDKMRLLLTLIEEDWP 256
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ K +VF NT +S + +L + G+VP ++R+ L +F G LV
Sbjct: 257 E--KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQ--GQLDILVA 312
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + DV HV +D P + DY+HR GRT R G KG S ++ L IE
Sbjct: 313 TDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIE 372
Query: 316 EAI 318
I
Sbjct: 373 TYI 375
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 102/303 (33%), Positives = 156/303 (51%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+++ PTREL+ Q+ + A ++ H R + +V GG Q L+ +D+++GT G
Sbjct: 84 QPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ ++ G + I+ +VLDEAD MFD GF DIR FL PN +L
Sbjct: 144 RIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR-FLF-----RRMPNADQRLNMLF 197
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ VQ+L + + + K + + + S E+K+ LL ++E
Sbjct: 198 SATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPS-QEDKMRLLLTLIEEDWP 256
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ K +VF NT +S + +L + G+VP ++R+ L +F G LV
Sbjct: 257 E--KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQ--GQLDILVA 312
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + DV HV +D P + DY+HR GRT R G KG S ++ L IE
Sbjct: 313 TDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIE 372
Query: 316 EAI 318
I
Sbjct: 373 TYI 375
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 105/326 (32%), Positives = 173/326 (53%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG---GRLRPQEDSLNNPIDMVVGT 74
PR +VL P+REL+EQV VA+S+ + + + GG RL+ Q + D++V T
Sbjct: 204 PRGLVLVPSRELAEQVQAVAQSLGRYLDLQVIELGGGLGMNRLKLQLGKWPSA-DVLVAT 262
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASK---PNGQ 129
PG + + ++ + + ++VLDE DT+ D F + L P+ ++ P
Sbjct: 263 PGALWKALKSQLISLHHLNFIVLDEVDTLLDESFVELVDYILGKSPIAESPAELEDPFNP 322
Query: 130 GFQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
Q V+V AT + + +L+ + + + +S LH + R F++L G+E K+ L
Sbjct: 323 KAQLVMVGATFPEGLNQLLSKVTSPDSLTTITSSKLHCIMPHVRQTFMRLKGTE-KVTEL 381
Query: 188 LQVLEPSLSKGNK------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+Q+L+ K NK V+VFCN+ ++ + + L++++I + G++PA R
Sbjct: 382 IQILKQH-DKANKAEPSGTVLVFCNSASTVNWLGYILDDHKIQHLRLQGQMPASMRAGIF 440
Query: 242 NKFKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GK 298
F+ G LVCTD+A+RGLD + V+ V+ +DFP DY+HR GR R+G++ G
Sbjct: 441 QSFQK--GSQNILVCTDIASRGLDSIHVEMVVNYDFPPTLQDYIHRAGRVGRVGSEVPGT 498
Query: 299 VTSLVAKK-DVLLADRIEEAIRKNES 323
VTS V DV L +IE A R+ S
Sbjct: 499 VTSFVTHPWDVSLVQKIELAARRRRS 524
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 383 (139.9 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 100/292 (34%), Positives = 151/292 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA+VL PTREL++Q+F A S+ + S ++ GG + Q + L+ D++V T GR
Sbjct: 331 PRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGR 390
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ + G + IKYLVLDEAD M D GF P IR+ + + P + QT++ S
Sbjct: 391 LVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQII----SEFDMPGCRDRQTLMFS 446
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHK-KIASARHDFIKLSGSENKLEALLQVLEPSLS 196
AT K +Q L + L+ + + + R +++ E+K LL L S
Sbjct: 447 ATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEYVV---EEDKNSYLLDYLSGLKS 503
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G ++F T S + +FLN+ T HG++ ER L F++ P LV
Sbjct: 504 DG-LCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFA--TPFLVA 560
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
TD+A+RGL + +V+ VI FD P + Y+HR GRT R G KG S +K+
Sbjct: 561 TDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKN 612
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 384 (140.2 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 104/309 (33%), Positives = 161/309 (52%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
VL + P +VL PTREL+ Q+ ++ +T V GG Q +L +++
Sbjct: 451 VLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEI 510
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
V+ TPGR++ +E G + YLVLDEAD M D GF P IRK + ++ P+ Q
Sbjct: 511 VIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQ- 564
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD---FIKLSGSENKLEAL 187
T++ SAT K VQ L + H++ +I +A H+ +++ K E +
Sbjct: 565 --TLMFSATWPKEVQALAHDFLTD--HIQVHIGSTEI-TANHNVRQIVEVCQDFEKKERM 619
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L L S+ + KV+VF T + L + ++ HG ER L++FKN
Sbjct: 620 LSFLG-SVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKN- 677
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLVAK 305
G P ++ TD+A+RGLD+ D+ +V+ +DFP N+I+ Y+HR GRTAR GA G SL+
Sbjct: 678 -GMVPIMIATDVASRGLDIKDIKYVVNYDFP-NTIEVYIHRIGRTARAGASGVSYSLLTT 735
Query: 306 KDVLLADRI 314
+ LA+ +
Sbjct: 736 DNARLANEL 744
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 383 (139.9 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 95/306 (31%), Positives = 159/306 (51%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q++ A+ S R+ ++ GG +L + +++ TP
Sbjct: 366 QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATP 425
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + +KYLVLDEAD M D GFGP+++K + + P+ + QT++
Sbjct: 426 GRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLM 481
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + + + + +++ G +K E L+++L +
Sbjct: 482 FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILR-N 539
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + +IST + HG+ +ER + L F+ G CP L
Sbjct: 540 IGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKCPVL 596
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLAD 312
V T +AARGLD++ V HVI FD P +Y+HR GRT R G G+ S + D LA
Sbjct: 597 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQ 656
Query: 313 RIEEAI 318
+ + +
Sbjct: 657 PLVKVL 662
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 383 (139.9 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 95/306 (31%), Positives = 159/306 (51%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q++ A+ S R+ ++ GG +L + +++ TP
Sbjct: 366 QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATP 425
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + +KYLVLDEAD M D GFGP+++K + + P+ + QT++
Sbjct: 426 GRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLM 481
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + + + + +++ G +K E L+++L +
Sbjct: 482 FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQV-GQYSKREKLVEILR-N 539
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + +IST + HG+ +ER + L F+ G CP L
Sbjct: 540 IGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKCPVL 596
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLAD 312
V T +AARGLD++ V HVI FD P +Y+HR GRT R G G+ S + D LA
Sbjct: 597 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQ 656
Query: 313 RIEEAI 318
+ + +
Sbjct: 657 PLVKVL 662
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 380 (138.8 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 102/308 (33%), Positives = 153/308 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P AV+L PTREL+ Q+ AK S+ + + GG + Q L +D++V TPGR
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + I++L LDEAD M D GF P IRK + + P G QT+L S
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMD---MPPRGVR-QTLLFS 353
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT + +Q+L + L + + R +F+ S + L LL +
Sbjct: 354 ATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENG 413
Query: 196 SKGNKVM--VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + + VF T + +++++L N + HG+ QER L FK+ G P
Sbjct: 414 IQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS--GRTPI 471
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + LA
Sbjct: 472 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLAR 531
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 532 PLAELMQE 539
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 380 (138.8 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 96/292 (32%), Positives = 152/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ ++ +R R +V GG + Q L ++V TPGR
Sbjct: 244 PISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 303
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 304 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 359
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + K
Sbjct: 360 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELD-KRSFLLDLLNAT-GK 417
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + A++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 418 DSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 475
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 476 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 527
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 380 (138.8 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 96/292 (32%), Positives = 152/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ ++ +R R +V GG + Q L ++V TPGR
Sbjct: 245 PISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 304
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 305 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 360
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + K
Sbjct: 361 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELD-KRSFLLDLLNAT-GK 418
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + A++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 419 DSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 476
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 477 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 528
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 381 (139.2 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 92/288 (31%), Positives = 151/288 (52%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q++ A+ S R+ ++ GG + + +++ TP
Sbjct: 338 QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATP 397
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + +KYLVLDEAD M D GFGP+++K + + P+ + QT+L
Sbjct: 398 GRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLL 453
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + + + + +++ G +K E L+++L +
Sbjct: 454 FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQV-GQYSKREKLVEILR-N 511
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + +IST + HG+ +ER + L F+ G CP L
Sbjct: 512 IGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKCPVL 568
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
V T +AARGLD++ V HVI FD P +Y+HR GRT R G G+ S
Sbjct: 569 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAIS 616
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 379 (138.5 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 101/302 (33%), Positives = 155/302 (51%)
Query: 11 VLMKPRRP-RAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPI 68
+L KP + ++L PTREL+ QV+ K +SHH + GG LR QE+ L
Sbjct: 192 LLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP 251
Query: 69 DMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASK 125
D+V+ TPGR++ HI + + DI+ LV+DEAD M + GF ++ + L +P R
Sbjct: 252 DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKR--- 308
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKL 184
QT+L SATM +Q L+ Q + K +AS F+++ +
Sbjct: 309 ------QTLLFSATMNTRIQDLIQLSLQKPVRIMIDP-PKSVASKLLQQFVRIRKRDQLK 361
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
ALL L +S ++V+VF ++ + L + HG + ++R++N+ F
Sbjct: 362 PALLYQLLKGVS--SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNF 419
Query: 245 KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K+ + P L+CTDLAARGLD+ ++ VI +D P YLHR GRTAR G G + V
Sbjct: 420 KSLE--VPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Query: 304 AK 305
+
Sbjct: 478 GE 479
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 379 (138.5 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 101/302 (33%), Positives = 155/302 (51%)
Query: 11 VLMKPRRP-RAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPI 68
+L KP + ++L PTREL+ QV+ K +SHH + GG LR QE+ L
Sbjct: 192 LLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP 251
Query: 69 DMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASK 125
D+V+ TPGR++ HI + + DI+ LV+DEAD M + GF ++ + L +P R
Sbjct: 252 DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKR--- 308
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKL 184
QT+L SATM +Q L+ Q + K +AS F+++ +
Sbjct: 309 ------QTLLFSATMNTRIQDLIQLSLQKPVRIMIDP-PKSVASKLLQQFVRIRKRDQLK 361
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
ALL L +S ++V+VF ++ + L + HG + ++R++N+ F
Sbjct: 362 PALLYQLLKGVS--SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNF 419
Query: 245 KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K+ + P L+CTDLAARGLD+ ++ VI +D P YLHR GRTAR G G + V
Sbjct: 420 KSLE--VPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Query: 304 AK 305
+
Sbjct: 478 GE 479
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 96/297 (32%), Positives = 149/297 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++LCPTREL+ QV + + + ++ GG + QE L +D+++
Sbjct: 72 RARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ + G ++ ++ L++DEAD M D GF PDI K L A++ QT
Sbjct: 132 TPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLP--ANR------QT 183
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE--ALLQVL 191
+L SAT +Q+L + + + + + +KL ++ K AL +V+
Sbjct: 184 LLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVI 243
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E + K +VFCN V L ++ HG++P R E L +F+ DG
Sbjct: 244 EATNVKNG--IVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFR--DGKL 299
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV +D+AARGLD+ DV HV F P DY+HR GRT R G G+ ++V D
Sbjct: 300 KLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPAD 356
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 94/281 (33%), Positives = 148/281 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + A ++ ++T + GG PQ L +++V+ TPGR
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E N + YLVLDEAD M D GF P IRK + ++ P+ Q T+ S
Sbjct: 233 LIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR-----PDRQ---TLYWS 284
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K V++L + + + K A + + K L+++LE +
Sbjct: 285 ATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLE-DIMD 343
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G++++VF +T + L + ++ HG+ ER L++F++ G P + T
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRS--GKSPIMTAT 401
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+AARGLD+ DV +VI +DFP + DY+HR GRT R GAKG
Sbjct: 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 442
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 380 (138.8 bits), Expect = 1.8e-34, P = 1.8e-34
Identities = 101/308 (32%), Positives = 158/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++L PTREL Q+F A+ ++ + R +V GG + Q + D++V TPGR
Sbjct: 272 PTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 331
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +IKYL+LDEAD M D GF P IR+ + PN QT++ S
Sbjct: 332 LVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIV----EGEDMPNVNDRQTLMFS 387
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + +Q L + + L R + + I + ++++ +K LL +L
Sbjct: 388 ATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ-KVEYVE---DHDKRSVLLDILHTH 443
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ G ++F T + A+ FL + HG+ +ER L F++ G P L
Sbjct: 444 GTTG-LTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRS--GRYPIL 500
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK--KDVL-- 309
V T +AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ + + V+
Sbjct: 501 VATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRD 560
Query: 310 LADRIEEA 317
L D ++EA
Sbjct: 561 LIDLLKEA 568
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 101/306 (33%), Positives = 158/306 (51%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
A+VL PTREL+ Q+ ++ RS+ + GG + Q L ++V TPGRI+
Sbjct: 194 ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIM 253
Query: 80 QHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVLV 136
H+E ++KYLV+DEAD + D FGP + K L +P+K T L
Sbjct: 254 DHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRT----------TYLF 303
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS-GSENKLEALLQVLEPSL 195
SATMT ++KL + S+ ++ + + ++ G +N + L+ +L +
Sbjct: 304 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTI--LIHLLNEFM 361
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G ++VF T+ ++ + V HG++ +R+ +LNKFK+ + LV
Sbjct: 362 --GKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANI--LV 417
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ VD VI +D P +S Y+HR GRTAR G GK SL+ + D+ + RI
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Query: 315 EEAIRK 320
E + K
Sbjct: 478 ESVLGK 483
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 380 (138.8 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 95/290 (32%), Positives = 154/290 (53%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q++ A+ S R+ ++ GG + + +++ TP
Sbjct: 337 QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCATP 396
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + +KYLVLDEAD M D GFGP+++K + + P+ + QT+L
Sbjct: 397 GRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLL 452
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF---IKLSGSENKLEALLQVLE 192
SAT + +Q+L + + ++L + ++ A D I G +K E L+++L
Sbjct: 453 FSATFPEEIQRLAGDFLKS-SYLFVAV--GQVGGACRDVQQTILQVGQYSKREKLVEILR 509
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
++ + MVF T + + FL + +IST + HG+ +ER + L F+ G CP
Sbjct: 510 -NIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKCP 565
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
LV T +AARGLD++ V HVI FD P +Y+HR GRT R G G+ S
Sbjct: 566 VLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAIS 615
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 378 (138.1 bits), Expect = 2.7e-34, P = 2.7e-34
Identities = 98/287 (34%), Positives = 151/287 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K L+Q++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYTQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 335 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 392
Query: 254 LVCTDLAARGLDLDVDHV---IMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+A+RGL DV+ V I +D+P +S DY+HR GRTAR KG
Sbjct: 393 LIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 439
>TAIR|locus:2077592 [details] [associations]
symbol:AT3G06980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0006655 "phosphatidylglycerol biosynthetic process"
evidence=RCA] [GO:0009658 "chloroplast organization" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006968
GO:GO:0003723 EMBL:AC016827 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 EMBL:AJ296275 EMBL:AY048260 EMBL:AY113064
EMBL:BT002520 IPI:IPI00545954 RefSeq:NP_187354.1 UniGene:At.18753
ProteinModelPortal:Q8GUG7 SMR:Q8GUG7 IntAct:Q8GUG7 STRING:Q8GUG7
PaxDb:Q8GUG7 PRIDE:Q8GUG7 EnsemblPlants:AT3G06980.1 GeneID:819883
KEGG:ath:AT3G06980 KEGG:dosa:Os03t0108600-01 GeneFarm:1029
TAIR:At3g06980 HOGENOM:HOG000078675 InParanoid:Q8GUG7 OMA:ANCRSIS
PhylomeDB:Q8GUG7 ProtClustDB:CLSN2915517 Genevestigator:Q8GUG7
GermOnline:AT3G06980 Uniprot:Q8GUG7
Length = 781
Score = 380 (138.8 bits), Expect = 3.2e-34, P = 3.2e-34
Identities = 115/347 (33%), Positives = 183/347 (52%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQ 60
LR +E P PR +VL PT EL+ QV +SIS FRS +V+GG R R Q
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQ 495
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
++L +D+++ TPGR + +G + +++ +LDE D +F G D +F L+
Sbjct: 496 LENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILF----GDD--EFEAALQ 549
Query: 121 NRASKPNGQGFQTVLVSATMTKAV-QKLVD--EECQGIAHLRTSTLHKKIASARHDF-IK 176
N + Q + V+AT+ + KLV+ +C+ + R +H+ +++A +F +
Sbjct: 550 NLINSSPVTA-QYLFVTATLPLEIYNKLVEVFPDCEVVMGPR---VHR-VSNALEEFLVD 604
Query: 177 LSGSEN-----------KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN-----E 220
SG +N K ALLQ++E + +K ++FCN + + R V++ E
Sbjct: 605 CSGDDNAEKTPETAFQNKKTALLQIMEEN--PVSKTIIFCNKIETCRKVENIFKRVDRKE 662
Query: 221 NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL--VCTDLAARGLDLD-VDHVIMFDFP 277
Q+ + +H + + R+ N+ +F + + +L VCTD A+RG+D VDHV++FDFP
Sbjct: 663 RQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFP 722
Query: 278 LNSIDYLHRTGRTARMGA--KGKVTSLVAKKDVLLADRIEEAIRKNE 322
+ +Y+ R GRTAR GA KGK V K V LA RI I +NE
Sbjct: 723 RDPSEYVRRVGRTAR-GARGKGKAFIFVVGKQVGLARRI---IERNE 765
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 372 (136.0 bits), Expect = 3.4e-34, P = 3.4e-34
Identities = 98/306 (32%), Positives = 158/306 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ H +R R+T V GG Q L+ ++V+ TPGR
Sbjct: 187 PIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGR 246
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 247 LIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 298
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K V++L + ++ +L + +++ K + L + LE + S+
Sbjct: 299 ATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETA-SQ 357
Query: 198 GN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
N K ++F +T + +L E+ + HG+ +ER L +F+N G P +V
Sbjct: 358 DNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRN--GRSPIMV 415
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+ +++VI +D P N DY+HR GRT R GA G S +++ L ++
Sbjct: 416 ATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKL 475
Query: 315 EEAIRK 320
+R+
Sbjct: 476 ISIMRE 481
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 101/312 (32%), Positives = 161/312 (51%)
Query: 15 PRR---P-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
PRR P R ++L PTREL+ QV A++++ + R ++GG + + D L D+
Sbjct: 69 PRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDI 128
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
VV TPGR+L++I+ I++L+LDEAD M D GFGP + + + R
Sbjct: 129 VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK------- 181
Query: 131 FQTVLVSATMT-KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+L SAT+ + V+ + + AH+ ++ + + +K+E L +
Sbjct: 182 -QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L + + +VF T + L + QI GE+P R +++F+ +G
Sbjct: 241 ILT---EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR--EG 295
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D L+ TD+AARG+D+ D+ HVI FD P ++ YLHR GRT R G KG SLV D
Sbjct: 296 DVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQ 355
Query: 309 LLADRIEEAIRK 320
+ R+E I++
Sbjct: 356 PMMARVERYIKE 367
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 101/312 (32%), Positives = 161/312 (51%)
Query: 15 PRR---P-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
PRR P R ++L PTREL+ QV A++++ + R ++GG + + D L D+
Sbjct: 69 PRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDI 128
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
VV TPGR+L++I+ I++L+LDEAD M D GFGP + + + R
Sbjct: 129 VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK------- 181
Query: 131 FQTVLVSATMT-KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+L SAT+ + V+ + + AH+ ++ + + +K+E L +
Sbjct: 182 -QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKK 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L + + +VF T + L + QI GE+P R +++F+ +G
Sbjct: 241 ILT---EQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR--EG 295
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D L+ TD+AARG+D+ D+ HVI FD P ++ YLHR GRT R G KG SLV D
Sbjct: 296 DVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQ 355
Query: 309 LLADRIEEAIRK 320
+ R+E I++
Sbjct: 356 PMMARVERYIKE 367
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 373 (136.4 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 99/285 (34%), Positives = 150/285 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV V+ H + T + GG PQ L +D+VV TPGR
Sbjct: 203 PAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGR 262
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +++G YLVLDEAD M D GF P I+K + ++ P+ Q T++ S
Sbjct: 263 LLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIR-----PDRQ---TLMFS 314
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG--SENKLEA-LLQVLEPS 194
AT K V+ L + + A L +L +A H+ ++ E+ +A L+++L
Sbjct: 315 ATWPKEVRALASDFQKDAAFLNVGSLE---LAANHNITQVVDILEEHAKQAKLMELLNHI 371
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K K ++F T + + + + T+ HG+ ER L +FK G P
Sbjct: 372 MNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKA--GKTPI 429
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
++ TD+AARGLD+D + VI +D+P NS DY+HR GRT R KG
Sbjct: 430 MLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKG 474
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 377 (137.8 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 96/292 (32%), Positives = 154/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG Q L ++V TPGR
Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGR 325
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 381
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + K
Sbjct: 382 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELD-KRSFLLDLLNAT-GK 439
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + ++++FL + + + + HG+ ++R E L++F++ G P LV T
Sbjct: 440 DSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRS--GRKPILVAT 497
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNL 549
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 378 (138.1 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 97/297 (32%), Positives = 155/297 (52%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGR-LRPQEDSLNNPIDMVVGT 74
+ P A+++ PTREL Q++ A+ S+ R +V GG + + D + +++ T
Sbjct: 350 QEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRD-VEKGCNILCAT 408
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L + + ++YLVLDEAD M D GF P+I K L + P + QT+
Sbjct: 409 PGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEK----LMTKPGMPTKEKRQTL 464
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK--LSGSEN-KLEALLQVL 191
+ SAT + +++L + HL + + A D + L EN K+E LL++L
Sbjct: 465 MFSATYPEEIRRLASNYLKS-EHL--FVVVGLVGGACSDVAQTVLEMRENGKMEKLLEIL 521
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ S + + M+F NT + + +L + + S+ + HG+ +R L F+ G C
Sbjct: 522 KSS--EKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRT--GKC 577
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+VCT +AARGLD++ V HVI +D P +Y+HR GRT R G GK TS +D
Sbjct: 578 TVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQD 634
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 376 (137.4 bits), Expect = 4.4e-34, P = 4.4e-34
Identities = 113/314 (35%), Positives = 161/314 (51%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RP +VL PTREL+ QV S+ RS V GGG Q + L +D+++ TPG
Sbjct: 316 RPGMLVLTPTRELALQVEGECCKYSYKG-LRSVCVYGGGNRDEQIEELKKGVDIIIATPG 374
Query: 77 RILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
R L ++ N V +I YLVLDEAD M D GF P I K L+ ++ P+ Q TV+
Sbjct: 375 R-LNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR-----PDRQ---TVM 425
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT +V +L + + TL S+ I ++ E K + L+ S+
Sbjct: 426 TSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQ-SM 484
Query: 196 SKGNKVMVFCNTLNSSRAV-DHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S +KV+VF S +AV DH ++ IS + HG+ ++R + L FK G
Sbjct: 485 SSTDKVIVFV----SRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKT--GKV 538
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ TDLA+RGLD+ DV HV FDFP N +Y+HR GRT R G G + + + D +
Sbjct: 539 RILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRV 598
Query: 311 ADRIEEAI-RKNES 323
A + + R N+S
Sbjct: 599 ASELINILERANQS 612
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 107/319 (33%), Positives = 158/319 (49%)
Query: 7 AMLGV-LMKPRRPR-----AVVLCPTRELSEQVFRVAKSISH-HARFRSTMVSGGGRLRP 59
A G+ L+ P PR A+V+CPTREL++QV + + ++ + + GG P
Sbjct: 58 AAFGIGLLNPINPRYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGP 117
Query: 60 QEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL 119
Q SL + ++VGTPGRI QH+ G++V + LVLDEAD M D GF I +
Sbjct: 118 QIASLEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKT 177
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
+R QT+L SAT +++L + + ++ H F ++S
Sbjct: 178 PSRR--------QTLLFSATYPVGIKQLASKFMRDPQTVKAEAFHDD-TQIEQRFYEIS- 227
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNS-SRAVDHFLNENQISTVNYHGEVPAQERV 238
E ++ A+ +VL + + FC T VDH L IS V HG++ ++R
Sbjct: 228 PEERMSAVTKVLHHF--RPASCVAFCFTKQQVQETVDH-LTAKGISAVGLHGDLEQRDRD 284
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L F N LV TD+AARGLD+D +D VI + +S ++HR GRT R G KG
Sbjct: 285 QVLAMFANRSTS--VLVATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKG 342
Query: 298 KVTSLVAKKDVLLADRIEE 316
SLVA + A IE+
Sbjct: 343 IAVSLVAPSEAHRAQAIEQ 361
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 99/305 (32%), Positives = 155/305 (50%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
A +L PTREL++Q+ S+ RST + GG + Q L +++ TPGR++
Sbjct: 152 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLM 211
Query: 80 QHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVLV 136
H+E+ +K+LV+DEAD + D FGP + + L +P + R T L
Sbjct: 212 DHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT---------TYLF 262
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATMT + KL S ++ + + + + G K L+ +L +
Sbjct: 263 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTYLIYLLNEFI- 320
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G +++F T ++ + N + S HG++ +R+ +L+ FK G LV
Sbjct: 321 -GKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKA--GKRSILVA 377
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ VD V+ +D P++S Y+HR GRTAR G GK SLV++ D+ L RIE
Sbjct: 378 TDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 437
Query: 316 EAIRK 320
E + K
Sbjct: 438 EVLGK 442
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 379 (138.5 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 103/308 (33%), Positives = 157/308 (50%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + R+T + GG Q L +++V+ TPGR
Sbjct: 231 PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGR 290
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q ++ S
Sbjct: 291 LIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIR-----PDRQ---VLMWS 342
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG--SEN-KLEALLQVL-EP 193
AT K V++L +E + +L SA H+ +++ EN KL L+++L +
Sbjct: 343 ATWPKEVRQLAEEFLNNYIQVNIGSLS---LSANHNILQIVDVCDENEKLMKLIKLLTDI 399
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S K ++F T + ++ HG+ QER L+ F+N G
Sbjct: 400 SAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN--GRHSI 457
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+D V VI +D+P NS DY+HR GRT R G +L + A+
Sbjct: 458 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517
Query: 313 RIEEAIRK 320
+ + +R+
Sbjct: 518 DLIQVLRE 525
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 376 (137.4 bits), Expect = 4.7e-34, P = 4.7e-34
Identities = 97/292 (33%), Positives = 152/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 262 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 321
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 322 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 377
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + S
Sbjct: 378 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLD-KRSFLLDILGATGSD 436
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 437 -SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 493
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS +K++
Sbjct: 494 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM 545
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 376 (137.4 bits), Expect = 4.8e-34, P = 4.8e-34
Identities = 97/292 (33%), Positives = 152/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 324
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 325 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 380
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + S
Sbjct: 381 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLD-KRSFLLDILGATGSD 439
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 440 -SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 496
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS +K++
Sbjct: 497 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM 548
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 376 (137.4 bits), Expect = 5.0e-34, P = 5.0e-34
Identities = 95/283 (33%), Positives = 148/283 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 268 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 327
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 328 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 383
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + S+ K LL +L + K
Sbjct: 384 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNAT-GK 441
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 442 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 499
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G +
Sbjct: 500 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLI 542
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 377 (137.8 bits), Expect = 5.1e-34, P = 5.1e-34
Identities = 107/312 (34%), Positives = 160/312 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + R+T V GG Q L ++V+ TPGR
Sbjct: 355 PIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGR 414
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ + G+ YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 415 LIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR-----PDRQ---TLMWS 466
Query: 138 ATMTKAVQKLVDE----ECQ-GIAHLRTSTLH--KKIASARHDFIKLSGSENKLEALLQ- 189
AT K V++L ++ Q I L S H +++ +F K E KL+ LL
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSK----EEKLKTLLSD 522
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + S S G K+++F T + F+ + HG+ ER L +F++ G
Sbjct: 523 IYDTSESPG-KIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRS--G 579
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+D + +VI FD+P NS DY+HR GRT R KG + K +
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639
Query: 309 LLADRIEEAIRK 320
A + + +R+
Sbjct: 640 KQAKALVDVLRE 651
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 375 (137.1 bits), Expect = 5.6e-34, P = 5.6e-34
Identities = 113/321 (35%), Positives = 164/321 (51%)
Query: 11 VLMKPRR-PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
VL + R P +VL PTREL+ QV S+ +S + GGG Q L+ D
Sbjct: 308 VLQRARNGPGMLVLTPTRELALQVDAECSEYSYRG-LKSVCIYGGGDRDGQIKDLSKGAD 366
Query: 70 MVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128
+++ TPGR L ++ N VY I YLVLDEAD M D GF P I K L+ ++ P+
Sbjct: 367 IIIATPGR-LHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVR-----PDR 420
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q TV+ SAT AV++L + + TL S I ++ +E++ + +
Sbjct: 421 Q---TVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVT-TEDEKRSHI 476
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAV-DHFLNE---NQISTVNYHGEVPAQERVENLNKF 244
Q S+S +KV++F S +AV DH ++ +IS + HG +R L F
Sbjct: 477 QAFIDSMSPKDKVIIFV----SRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSF 532
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K G L+ TDLA+RGLD+ DV HV +DFP N +Y+HR GRT R G G +L+
Sbjct: 533 KT--GKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLI 590
Query: 304 AKKDVLLADRIEEAI-RKNES 323
+ D +A + + R N+S
Sbjct: 591 TRNDWKIAGELINILERANQS 611
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 101/314 (32%), Positives = 166/314 (52%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+ +VL PTREL+ Q+ + +++ + ++ GG + Q +L +
Sbjct: 106 LLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHI 165
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
+V TPGR++ H+E+ +K+L++DEAD + + F ++ K L +P + R
Sbjct: 166 IVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERR----- 220
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
T L SATMTK V KL + A + S+ +K + + + +I + NK +
Sbjct: 221 -----TYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVP---NKYKET 272
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
V + GN +VFC T ++ + L + + V HG++ ++R+ +LNKFK++
Sbjct: 273 YLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSK 332
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+ LVCTD+AARGLD+ VD VI +D P S DY+HR GRTAR G G ++V +
Sbjct: 333 AREI--LVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQY 390
Query: 307 DVLLADRIEEAIRK 320
DV +IE + K
Sbjct: 391 DVEAYQKIEANLGK 404
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 376 (137.4 bits), Expect = 6.1e-34, P = 6.1e-34
Identities = 99/291 (34%), Positives = 152/291 (52%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q+F A+ S R ++ GG +L + +++ TP
Sbjct: 342 QEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGHSIRQIMQGCNILCATP 401
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + G I+YLVLDEAD M D GFGP+++K L+ SK Q T++
Sbjct: 402 GRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKK-LISFPGMPSKEQRQ---TLM 457
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHK-KIASARHDF---IKLSGSENKLEALLQVL 191
SAT + K D + + +L + ++ A D + G +K E L+++L
Sbjct: 458 FSATFPRGNFK--DWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSKREKLVEIL 515
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
++ + + MVF T + + FL + +IST + HG+ +ER + L F+ G C
Sbjct: 516 R-NIGE-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKC 571
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
P LV T +AARGLD++ V HVI FD P +Y+HR GRT R G GK S
Sbjct: 572 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAIS 622
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 99/308 (32%), Positives = 148/308 (48%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ + G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ + V++L H+ H ++ E KL L V ++
Sbjct: 184 SATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVR-EEEKLSLLKDVT--TIE 240
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDGDC 251
+ ++FC T + VDH Q+ VNY HG + ++R ++ F+ G
Sbjct: 241 NPDSCIIFCRTQEN---VDHVYR--QLDRVNYPCDKIHGGMVQEDRFGVMDDFRK--GKF 293
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G GK + + +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRF 353
Query: 311 ADRIEEAI 318
+ IE I
Sbjct: 354 LEEIEAYI 361
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 97/307 (31%), Positives = 162/307 (52%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMV 71
+K R + +VLCPTREL++QV + ++++ + + GG + PQ SL + ++
Sbjct: 65 VKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHII 124
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRI+ H++ + ++ LVLDEAD M + GF P + + P +
Sbjct: 125 VGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAII------EQSPRER-- 176
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL-LQV 190
QT+L SAT + +Q + + ++ + H+K +H F +L +++++AL L +
Sbjct: 177 QTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQH-FYQLDDDKSRMQALQLLL 235
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
LE K +VFCNT ++ V L S + HG++ ++R E L +F N+
Sbjct: 236 LE---HKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSA- 291
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
C LV TD+AARGLD+D +D V + ++ ++HR GRT R G+KG + +D
Sbjct: 292 C-VLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGY 350
Query: 310 LADRIEE 316
+EE
Sbjct: 351 KIALLEE 357
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 99/308 (32%), Positives = 148/308 (48%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ + G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ + V++L H+ H ++ E KL L V ++
Sbjct: 184 SATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVR-EEEKLSLLKDVT--TIE 240
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDGDC 251
+ ++FC T + VDH Q+ VNY HG + ++R ++ F+ G
Sbjct: 241 NPDSCIIFCRTQEN---VDHVYR--QLDRVNYPCDKIHGGMVQEDRFGVMDDFRK--GKF 293
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G GK + + +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRF 353
Query: 311 ADRIEEAI 318
+ IE I
Sbjct: 354 LEEIEAYI 361
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 101/303 (33%), Positives = 150/303 (49%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R RA+V+ PTREL+EQ+ ++ R RS V GG + PQ L ++VV PG
Sbjct: 70 RVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPG 129
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HI G + ++ LVLDEAD MFD GF PDIR+ L L R QT+L
Sbjct: 130 RLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRR--------QTLLF 181
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM ++ L + ++ T+ + A H + K LL++L + +
Sbjct: 182 SATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVA-HALYPVE-QHLKTPLLLELLRHTDT 239
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ V++F T + ++ + L + + G + R L+ F+ DG LV
Sbjct: 240 ES--VLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFR--DGTFQILVA 295
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARG+D+ V HVI +D P + Y+HR GRT R G +LV D + IE
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIE 355
Query: 316 EAI 318
++
Sbjct: 356 RSL 358
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 97/307 (31%), Positives = 162/307 (52%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMV 71
+K R + +VLCPTREL++QV + ++++ + + GG + PQ SL + ++
Sbjct: 65 VKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHII 124
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRI+ H++ + ++ LVLDEAD M + GF P + + P +
Sbjct: 125 VGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAII------EQSPRER-- 176
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL-LQV 190
QT+L SAT + +Q + + ++ + H+K +H F +L +++++AL L +
Sbjct: 177 QTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQH-FYQLDDDKSRMQALQLLL 235
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
LE K +VFCNT ++ V L S + HG++ ++R E L +F N+
Sbjct: 236 LE---HKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSA- 291
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
C LV TD+AARGLD+D +D V + ++ ++HR GRT R G+KG + +D
Sbjct: 292 C-VLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGY 350
Query: 310 LADRIEE 316
+EE
Sbjct: 351 KIALLEE 357
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 374 (136.7 bits), Expect = 7.5e-34, P = 7.5e-34
Identities = 95/292 (32%), Positives = 154/292 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG Q L ++V TPGR
Sbjct: 260 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGR 319
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 320 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV---EQDTMPPKGVR-HTMMFS 375
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + + K LL +L + +
Sbjct: 376 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELD-KRSFLLDLLNAT-GR 433
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + ++++FL + + + + HG+ ++R E L++F++ G P LV T
Sbjct: 434 DSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRS--GRKPILVAT 491
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 492 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNL 543
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 368 (134.6 bits), Expect = 9.2e-34, P = 9.2e-34
Identities = 104/324 (32%), Positives = 170/324 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG-GRLRPQEDSLNNPI-DMVVGTP 75
PR +VL P+REL+EQV VA+S+ + + + GG G R + P D++V TP
Sbjct: 204 PRGLVLVPSRELAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATP 263
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLV--PLKNRASK---PNGQG 130
G + + ++ + + ++VLDE DT+ D F + L P+ ++ P
Sbjct: 264 GALWKALKSQLISLQHLNFIVLDEVDTLLDESFLELVDYILEKSPIAESPAELEDPFNPK 323
Query: 131 FQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q VLV AT + + +L+ + + + +S LH + R F++L G++ K+ L+
Sbjct: 324 AQLVLVGATFPEGLNQLLSKVTSPDSLTTITSSKLHCLMPHVRQTFMRLKGAD-KVTELV 382
Query: 189 QVL--EPSLSK---GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
Q+L + SK V+VFCN+ ++ + + L++++I + G++PA R
Sbjct: 383 QILKQQDKASKTEPSGTVLVFCNSASTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQS 442
Query: 244 FKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GKVT 300
F+ G LVCTD+A+RGLD + V+ VI +DFP DY+HR GR R+G++ G V
Sbjct: 443 FQK--GSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGSVI 500
Query: 301 SLVAKK-DVLLADRIEEAIRKNES 323
S V DV L +IE A R+ S
Sbjct: 501 SFVTHPWDVSLVQKIELAARRRRS 524
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 104/317 (32%), Positives = 165/317 (52%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +A+VLCPTREL++QV +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+ + ++ LVLDEAD M + GF + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAII------A 173
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS--- 180
+ P + QT+L SAT +++++ + ++ H +S R F K+ GS
Sbjct: 174 AAPAER--QTLLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAAR 230
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+ LE LL +P+ S +VFCNT + V L+++ S + HG++ +ER +
Sbjct: 231 DEALETLLLHHQPTSS-----VVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQA 285
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L +F N+ LV TD+AARGLD+D +D V +D + ++HR GRT R G+KG
Sbjct: 286 LVQFANKS--ISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLA 343
Query: 300 TSLVAKKDVLLADRIEE 316
S + + +I+E
Sbjct: 344 FSFFSDNESYRVAQIDE 360
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 368 (134.6 bits), Expect = 1.0e-33, P = 1.0e-33
Identities = 105/326 (32%), Positives = 171/326 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG---GRLRPQEDSLNNPIDMVVGT 74
PR +VL P+REL+EQV VA+ + R + GG R+R Q S + P +++V T
Sbjct: 204 PRGLVLVPSRELAEQVRAVAQPLGSSLGLRVQELGGGHGMSRVRLQL-SKHPPAEVLVAT 262
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG--QGF- 131
PG + + ++ + + +LVLDE DT+ D F ++ +++ + A P F
Sbjct: 263 PGALWKALKGQLISLAQLSFLVLDEVDTLLDESF-LELVDYILEKSHIAEGPADLKDPFN 321
Query: 132 ---QTVLVSATMTKAVQKLVDE--ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
Q VLV AT + V +L+ + + + +S LH + + F++L G+E K+
Sbjct: 322 PKAQLVLVGATFPEGVGQLLSKVASLDSLTTITSSKLHCIMPHVKQTFMRLKGAE-KVTE 380
Query: 187 LLQVLEPS-----LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
L+Q+L+ V+VFCN+ ++ + + L++++I + G++PA R
Sbjct: 381 LVQILKQHDRAHRTGSTGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIF 440
Query: 242 NKFKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GK 298
F+ D L+CTD+A+RGLD V+ VI +DFPL DY+HR GR R+G++ G
Sbjct: 441 QSFQKGSRDI--LLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSEVPGT 498
Query: 299 VTSLVAKK-DVLLADRIEEAIRKNES 323
V S V DV L +IE A R+ S
Sbjct: 499 VISFVTHPWDVSLVQKIELAARRRRS 524
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 369 (135.0 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 100/311 (32%), Positives = 156/311 (50%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR +V+ PTREL+ Q + S+ ++ +V GG Q + N +++GTPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGR 295
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF-QTVLV 136
+L I DG++ + YLVLDEAD M D GF DIR + + P G QTV
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNII----SHTPDPTRNGSRQTVFF 351
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQ-VLEP 193
SAT ++V+ L + + + ++A++++ +++ E +L +L
Sbjct: 352 SATWPESVRALAATFLKDPVKITIGS--DELAASQNITQIVEILDDPRSKERMLDNLLRK 409
Query: 194 SLSKG---NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
LS G +K+++F + V+ L + + V HG++ R++ LN FK+ G
Sbjct: 410 HLSSGGKDDKILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQALNDFKS--GK 466
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
CP LV TD+AARGLD+ V VI FPL DY+HR GRT R KG + +D
Sbjct: 467 CPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKS 526
Query: 310 LADRIEEAIRK 320
A + +R+
Sbjct: 527 HAGELVNVLRQ 537
>FB|FBgn0086130 [details] [associations]
symbol:KH1 "KH1" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016063 "rhodopsin
biosynthetic process" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
EMBL:AY058512 RefSeq:NP_608544.1 UniGene:Dm.4179 SMR:Q9VPT3
EnsemblMetazoa:FBtr0078009 GeneID:33254 KEGG:dme:Dmel_CG3561
UCSC:CG3561-RA CTD:33254 FlyBase:FBgn0086130 InParanoid:Q9VPT3
OMA:ILCSAET OrthoDB:EOG4X69R7 GenomeRNAi:33254 NextBio:782677
Uniprot:Q9VPT3
Length = 536
Score = 366 (133.9 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 95/314 (30%), Positives = 165/314 (52%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K PR ++L P REL+ Q+ V + ++ + + GG + + +D++V
Sbjct: 181 KLNTPRVLILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVA 240
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
T G + + + G +++LVLDEADT+ D F + FL + G Q
Sbjct: 241 TLGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQM 300
Query: 134 VLVSATM---TKAV-QKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM T+ + K++D + I + + LH+ ++ F++LS ++ LL
Sbjct: 301 ILASATMPTNTREILHKVIDVDT--IREVVSPHLHRLMSHVTQKFLRLSKADRPA-TLLS 357
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+++ L+K ++VF N +S V FLN + ++ +N +G++ + R+ +F+N G
Sbjct: 358 LVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQN--G 415
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVA-K 305
C L TD+ +RGLD HV+ FDFPL+ DY+HR GR R+G K VT+L++ +
Sbjct: 416 HCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNLISSR 475
Query: 306 KDVLLADRIEEAIR 319
+++ + RIE A R
Sbjct: 476 REIDVVQRIEHAAR 489
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 368 (134.6 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 99/305 (32%), Positives = 167/305 (54%)
Query: 6 EAMLGVLMKPRRPRAVVLC-PTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
E + + +KPR AV++ PTREL+ Q+F VA+ + +V GG R + L
Sbjct: 168 ELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKL 227
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
++++V TPGR+L H+++ V+ ++K LV+DEAD + + GF ++++ + L
Sbjct: 228 AKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVL----- 282
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASA---RHDFIKLSGS 180
PN + Q++L SAT T V+ L + G ++ K +++A ++ + S
Sbjct: 283 -PN-ENRQSMLFSATQTTKVEDLARISLRPGPLYINVVP-EKDVSTADGLEQGYV-VCDS 338
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+ + L L+ ++ K K++VF ++ NS + LN + ++ HG+ Q+R
Sbjct: 339 DKRFLLLFSFLKRNVKK--KIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNT 396
Query: 241 LNKFKN-EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
+F N + G LVCTD+AARGLD+ VD ++ FD P + DY+HR GRTAR G +GK
Sbjct: 397 FFEFCNAKQG---ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTAR-GTQGK 452
Query: 299 VTSLV 303
SL+
Sbjct: 453 GKSLM 457
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 368 (134.6 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 99/305 (32%), Positives = 167/305 (54%)
Query: 6 EAMLGVLMKPRRPRAVVLC-PTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
E + + +KPR AV++ PTREL+ Q+F VA+ + +V GG R + L
Sbjct: 168 ELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKL 227
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
++++V TPGR+L H+++ V+ ++K LV+DEAD + + GF ++++ + L
Sbjct: 228 AKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVL----- 282
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASA---RHDFIKLSGS 180
PN + Q++L SAT T V+ L + G ++ K +++A ++ + S
Sbjct: 283 -PN-ENRQSMLFSATQTTKVEDLARISLRPGPLYINVVP-EKDVSTADGLEQGYV-VCDS 338
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+ + L L+ ++ K K++VF ++ NS + LN + ++ HG+ Q+R
Sbjct: 339 DKRFLLLFSFLKRNVKK--KIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNT 396
Query: 241 LNKFKN-EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
+F N + G LVCTD+AARGLD+ VD ++ FD P + DY+HR GRTAR G +GK
Sbjct: 397 FFEFCNAKQG---ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTAR-GTQGK 452
Query: 299 VTSLV 303
SL+
Sbjct: 453 GKSLM 457
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 100/316 (31%), Positives = 159/316 (50%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
ML LM+ P+ +VL PTREL+ Q+ + +++ R ++ GG + Q +L
Sbjct: 104 MLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGK 163
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
++V TPGR+L H+E+ ++KYL +DEAD + D FG + K + L
Sbjct: 164 KPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRIL------ 217
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + T L SATM+ V+ L + S+ ++ +++ + +I + L
Sbjct: 218 PRTR--HTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLY 275
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L G ++F T++ ++ V L + HG++ R+ L KF+
Sbjct: 276 -LVYLLNEFA--GQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFR 332
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ D LV TD+AARGLD+ VD V FD P++S Y+HR GRTAR G G S V
Sbjct: 333 SRSRDI--LVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVT 390
Query: 305 KKDVLLADRIEEAIRK 320
+ DV + RIE A+ K
Sbjct: 391 QYDVEVWLRIEHALSK 406
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 371 (135.7 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 113/320 (35%), Positives = 162/320 (50%)
Query: 12 LMKPRR-PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
L + R P +VL PTREL+ QV S+ +S V GGG Q L +D+
Sbjct: 312 LQRARNGPGMLVLTPTRELALQVEAECSKYSYKG-LKSVCVYGGGDRDGQIKDLLKGVDI 370
Query: 71 VVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++ TPGR L ++ N VY I YLVLDEAD M D GF P I K L+ ++ P+ Q
Sbjct: 371 IIATPGR-LNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIR-----PDRQ 424
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
TV+ SAT AV++L + + TL S I ++ +E++ + +Q
Sbjct: 425 ---TVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVT-TEDEKRSHIQ 480
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAV-DHFLNE---NQISTVNYHGEVPAQERVENLNKFK 245
S+S +KV++F S +AV DH ++ IS + HG +R L FK
Sbjct: 481 TFIESMSPKDKVIIFV----SRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFK 536
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
G L+ TDLA+RGLD+ DV HV +DFP N +Y+HR GRT R G G +L+
Sbjct: 537 T--GKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLIT 594
Query: 305 KKDVLLADRIEEAI-RKNES 323
+ D +A + + R N+S
Sbjct: 595 RSDWKIAGELIHILERANQS 614
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 371 (135.7 bits), Expect = 1.8e-33, P = 1.8e-33
Identities = 98/305 (32%), Positives = 155/305 (50%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +V+ PTREL Q++ +K S+ + R+ +V GG + Q +++ D++V TPGR
Sbjct: 270 PTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGR 329
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ ++ G + +I+YLVLDEAD M D GF P IR ++V P + QT++ S
Sbjct: 330 LKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIR-YIV---EECDMPAVKDRQTLMFS 385
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + +Q L + + L + + + + E K +L +L S ++
Sbjct: 386 ATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKK-SVILDLL--SANE 442
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+VF T + + +L + HG+ ER + L FKN G P LV T
Sbjct: 443 NGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKN--GAAPILVAT 500
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK--KDVL--LAD 312
+AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ + K+V+ L +
Sbjct: 501 AVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIE 560
Query: 313 RIEEA 317
+ EA
Sbjct: 561 LLSEA 565
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 369 (135.0 bits), Expect = 2.8e-33, P = 2.8e-33
Identities = 94/292 (32%), Positives = 151/292 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R +V GG + Q L ++V TPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + P G T++ S
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRII---EQDTMPPKGVR-HTMMFS 382
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + + ++ K LL +L +
Sbjct: 383 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEAD-KRSFLLDLLNAT-GT 440
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + +++ FL + + HG+ ++R E L++F++ G P LV T
Sbjct: 441 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 498
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++
Sbjct: 499 AVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 370 (135.3 bits), Expect = 2.9e-33, P = 2.9e-33
Identities = 98/301 (32%), Positives = 158/301 (52%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ ++ R +V GG + +++ TP
Sbjct: 353 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCATP 412
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+ I G + ++YLVLDEAD M D GF P++RK + P+ + QT++
Sbjct: 413 GRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVAS----PGMPSKEERQTLM 468
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + +++ +K + LL++L +
Sbjct: 469 FSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVD-QYSKRDQLLELLRAT 527
Query: 195 LSKGN-KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
GN + MVF T S+ + FL + +IST + HG+ +ER + L+ F+ G CP
Sbjct: 528 ---GNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRL--GHCPV 582
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLV-AKKDVLL 310
LV T +AARGLD++ V HV+ FD P +SID Y+HR GRT R G G+ S + D L
Sbjct: 583 LVATSVAARGLDIEQVQHVVNFDMP-SSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPL 641
Query: 311 A 311
A
Sbjct: 642 A 642
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 367 (134.2 bits), Expect = 3.4e-33, P = 3.4e-33
Identities = 97/285 (34%), Positives = 139/285 (48%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+F A+ ++ + R +V GG + Q ++ D++V TPGR
Sbjct: 238 PSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGR 297
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E G + +IKYLVLDEAD M D GF P IR + P+ + QT++ S
Sbjct: 298 LNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIV----EECDMPSVENRQTLMFS 353
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q L + L + + + + + K ALL +L K
Sbjct: 354 ATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKK-SALLDLLSAE-HK 411
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G ++F T + + FL HG+ ER L+ FK D LV T
Sbjct: 412 G-LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADI--LVAT 468
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+AARGLD+ +V HVI +D P + DY+HR GRT R G G TS
Sbjct: 469 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATS 513
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 95/313 (30%), Positives = 159/313 (50%)
Query: 15 PRR----PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
PRR R ++L PTREL+ Q+ R A ++ +++GG PQE++L ID+
Sbjct: 67 PRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKGNIDI 126
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+V TPGR++++++ G + L++DEAD M D GF ++ + + R
Sbjct: 127 LVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK------- 179
Query: 131 FQTVLVSATMT-KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLEALL 188
Q +L SAT+ V + E + K+ A H +I L+ ++K L
Sbjct: 180 -QNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKFALLC 237
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+L+ K + +VF T + +++ L + I G++ ++R + L++F
Sbjct: 238 HLLKQEDVK--RAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK-- 293
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G+ L+ TD+AARG+D+D + HVI FD P ++ Y+HR GRT R GAKG SL D
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 308 VLLADRIEEAIRK 320
+ + +IE I +
Sbjct: 354 MRIVGKIERYIEQ 366
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 95/313 (30%), Positives = 159/313 (50%)
Query: 15 PRR----PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
PRR R ++L PTREL+ Q+ R A ++ +++GG PQE++L ID+
Sbjct: 67 PRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKGNIDI 126
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+V TPGR++++++ G + L++DEAD M D GF ++ + + R
Sbjct: 127 LVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK------- 179
Query: 131 FQTVLVSATMT-KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLEALL 188
Q +L SAT+ V + E + K+ A H +I L+ ++K L
Sbjct: 180 -QNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLADDKDHKFALLC 237
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+L+ K + +VF T + +++ L + I G++ ++R + L++F
Sbjct: 238 HLLKQEDVK--RAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK-- 293
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G+ L+ TD+AARG+D+D + HVI FD P ++ Y+HR GRT R GAKG SL D
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 308 VLLADRIEEAIRK 320
+ + +IE I +
Sbjct: 354 MRIVGKIERYIEQ 366
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 102/306 (33%), Positives = 156/306 (50%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI- 78
A+V+ PTREL+ Q+ K++ R +++ GG + Q SL + +V+ TPGRI
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIK 188
Query: 79 --LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
L++ D V+ K+LVLDEAD + D GF ++R L P + QT+L
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCL------PKSR--QTLLF 240
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATMT +Q L++ K + + FI + K L+ +L
Sbjct: 241 SATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFI-FEDKDAKELYLVHILSQMED 299
Query: 197 KG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
KG M+F +T + + + L+E ++ + H R+ L+KFK+ G P L+
Sbjct: 300 KGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKS--GKVPILL 357
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+A+RGLD+ VD VI +D P + DY+HR GRTAR G G S++ + DV L +I
Sbjct: 358 ATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKI 417
Query: 315 EEAIRK 320
EE + K
Sbjct: 418 EEEVGK 423
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 97/307 (31%), Positives = 153/307 (49%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+K + R+++L PTREL+ Q+ + S ++ +V GG + Q DS+ +D++V
Sbjct: 71 IKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILV 130
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+L IE G++ + ++ VLDEADTM D GF D++ + L P + Q
Sbjct: 131 ATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKL------PKSR--Q 182
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SATM ++ L + ++ + I L S NK+ L +L
Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKS-NKVPLLFNIL- 240
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + KV++FC T + + L + I+ + H R E L FK D
Sbjct: 241 -TKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFK--DSTLR 297
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + VI ++ P + +Y+HR GRTAR G G S + D+
Sbjct: 298 VLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQL 357
Query: 312 DRIEEAI 318
IE +I
Sbjct: 358 TNIENSI 364
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 99/300 (33%), Positives = 146/300 (48%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K RP AVV+ PTREL+ Q++ + + + GG + Q ++L + +VV
Sbjct: 143 KSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVA 201
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+ DG++ G +KYLVLDEAD M D+GF DI+ + P+ SK QT
Sbjct: 202 TPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMP--VSKR-----QT 254
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTS---TLHKKIASARHDFIKLSGSENKLEALLQV 190
V+ +AT V+ L + + + S +++ K + L+Q+
Sbjct: 255 VMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQI 314
Query: 191 LEPSLSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
L +G +KV+ FC + V+ L HG++ QER +L FK+
Sbjct: 315 LNRH-QRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKS-- 371
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G LV TD+AARGLD+ V V+ FPL DY+HR GRT R GA G +L + D
Sbjct: 372 GAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 368 (134.6 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 98/310 (31%), Positives = 154/310 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++Q++ + ++ V GG + + + ++VGT GR
Sbjct: 630 PRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGR 689
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
I E+G + ++ VLDEAD M D GFG DI + N S P + QT++
Sbjct: 690 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV----NYESMPKKENRQTLMF 745
Query: 137 SATMTKAVQKLVDEEC-QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL---- 191
SAT +VQ+ +G L + +F K SE K + LL++L
Sbjct: 746 SATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKK-DKLLEILGIDI 804
Query: 192 EPSLSKGN------KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
+ ++ N K +VF + + + L+ Q+ + HG +ER E L +F+
Sbjct: 805 DSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR 864
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
N G P L+ T +A RGLD+ VDHVI +D P N DY+HR GRT R+G G+ TS ++
Sbjct: 865 N--GSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS 922
Query: 305 KKDVLLADRI 314
+ LL++ +
Sbjct: 923 EDCNLLSELV 932
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 368 (134.6 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 98/310 (31%), Positives = 154/310 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++Q++ + ++ V GG + + + ++VGT GR
Sbjct: 630 PRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGR 689
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
I E+G + ++ VLDEAD M D GFG DI + N S P + QT++
Sbjct: 690 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV----NYESMPKKENRQTLMF 745
Query: 137 SATMTKAVQKLVDEEC-QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL---- 191
SAT +VQ+ +G L + +F K SE K + LL++L
Sbjct: 746 SATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKK-DKLLEILGIDI 804
Query: 192 EPSLSKGN------KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
+ ++ N K +VF + + + L+ Q+ + HG +ER E L +F+
Sbjct: 805 DSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR 864
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
N G P L+ T +A RGLD+ VDHVI +D P N DY+HR GRT R+G G+ TS ++
Sbjct: 865 N--GSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS 922
Query: 305 KKDVLLADRI 314
+ LL++ +
Sbjct: 923 EDCNLLSELV 932
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 100/305 (32%), Positives = 159/305 (52%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL+ QV ++ S + F + GG ++ Q L D++V TPGR+
Sbjct: 76 RVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+H+ N+ + +LVLDEAD M D GF DI+K L + + Q +L SA
Sbjct: 136 LEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR--------QNLLFSA 187
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + AV+KL +E + Q I+ + +T ++ + + K E L +++
Sbjct: 188 TFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQ----RRKRELLSELI--GK 241
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T +++ + LN + I + HGE R L +F + G LV
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVS--GKVRVLV 299
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-LLADR 313
T++AARGLD+ +++V+ FD P + DY+HR GRT R G G S V++++ LAD
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLAD- 358
Query: 314 IEEAI 318
IE+ I
Sbjct: 359 IEKLI 363
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 362 (132.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 100/305 (32%), Positives = 167/305 (54%)
Query: 8 MLGVL-MKPRRPRAV-VLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSL 64
ML L KPR V V+ PTREL+ Q+F VA+ + + H++ ++ G R R + + L
Sbjct: 189 MLSALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANR-RAEAEKL 247
Query: 65 NNPIDMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
+++++ TPGR+L H+++ V+ ++K LV+DEAD + + GF ++R+ + L
Sbjct: 248 TKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL---- 303
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTL--HKKIASARHDFIKLSGS 180
PN + QT+L SAT T V+ L + G ++ H + ++ + +
Sbjct: 304 --PN-EDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYV-ICEA 359
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+ + L L+ +L K K++VF ++ N + LN + ++ HG+ Q+R
Sbjct: 360 DKRFLLLFSFLKRNLKK--KIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNT 417
Query: 241 LNKFKN-EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
+F N + G L+CTD+AARGLD+ VD +I FD P ++ DY+HR GRTAR GA G+
Sbjct: 418 FFEFCNAKQG---VLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTAR-GANGR 473
Query: 299 VTSLV 303
SL+
Sbjct: 474 GRSLM 478
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 365 (133.5 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 105/328 (32%), Positives = 173/328 (52%)
Query: 11 VLMKPRR---PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG---GG-RLRPQEDS 63
+L KP + R +VL PTREL+ QV V K I ARF S + G GG LR QE
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQI---ARFVSGITFGLAVGGLNLRQQEQM 349
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGD-IKYLVLDEADTMFDRGFGPDIRKFLVPLKNR 122
L + D+V+ TPGR + HI + D ++ LV+DEAD M + GF ++ + + L
Sbjct: 350 LKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLL--- 406
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
P+ + Q +L SATM ++ LV + + K +F+++ ++
Sbjct: 407 ---PSNR--QNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDH 461
Query: 183 KLEALL----QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
ALL + L+P+ K +++VF ++ + + +S HG + ++R+
Sbjct: 462 LKPALLFNLIRKLDPTGQK--RIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRL 519
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+++NKFKN + P L+CTDLA+RGLD+ ++ VI +D P + YLHR GRTAR G +G
Sbjct: 520 DSVNKFKNLE--VPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREG 577
Query: 298 KVTSLVAK--KDVLLADRIEEAIRKNES 323
+ + V + +D + +++ +N+S
Sbjct: 578 RSVTFVGESSQDRSIVRAAIKSVEENKS 605
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 361 (132.1 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 94/281 (33%), Positives = 144/281 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ ++ + RST + GG PQ L +++V+ TPGR
Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 298
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + + YLVLDEAD M D GF P IRK + ++ P+ Q T+L S
Sbjct: 299 LIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR-----PDRQ---TLLWS 350
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + V+ L + + + K + + I++ + K LL +L+ L
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLK-QLMD 409
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G+K+++F T V L + + HG+ ER L +FK+ G P + T
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKS--GRSPIMTAT 467
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+AARGLD+ D+ V+ +DFP DY+HR GRT R GAKG
Sbjct: 468 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKG 508
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 364 (133.2 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 90/288 (31%), Positives = 149/288 (51%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q++ A+ S R+ ++ GG + + +++ TP
Sbjct: 349 QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATP 408
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + +KYLVLDEAD M D GFGP+++K + + P+ + QT+L
Sbjct: 409 GRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLL 464
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + + + + +++ G K L+++L +
Sbjct: 465 FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQV-GPVFKKRKLVEILR-N 522
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + +IST + HG+ +ER + L F+ G CP L
Sbjct: 523 IGD-ERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKCPVL 579
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
V T +AARGLD++ V HVI F+ P +Y+HR GRT R G G+ S
Sbjct: 580 VATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAIS 627
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 364 (133.2 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 90/288 (31%), Positives = 149/288 (51%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q++ A+ S R+ ++ GG + + +++ TP
Sbjct: 349 QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATP 408
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I + +KYLVLDEAD M D GFGP+++K + + P+ + QT+L
Sbjct: 409 GRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLL 464
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + + + + +++ G K L+++L +
Sbjct: 465 FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQV-GPVFKKRKLVEILR-N 522
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + +IST + HG+ +ER + L F+ G CP L
Sbjct: 523 IGD-ERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC--GKCPVL 579
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
V T +AARGLD++ V HVI F+ P +Y+HR GRT R G G+ S
Sbjct: 580 VATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAIS 627
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 360 (131.8 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 95/302 (31%), Positives = 147/302 (48%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P AV++ PTREL+ Q+F AK ++ + ++ +V GG + Q + D++V TPGR
Sbjct: 226 PTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGR 285
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E G + ++KYLVLDEAD M D GF P IR + ++ P G+ QT++ S
Sbjct: 286 LNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIV---EDCDMTPVGER-QTLMFS 341
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q L + L + + + + + K ALL +L S S
Sbjct: 342 ATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKK-SALLDLL--SAST 398
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
++F T + + FL HG+ ER L F++ G LV T
Sbjct: 399 DGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRS--GAATLLVAT 456
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
+AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ ++ + + E
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516
Query: 317 AI 318
+
Sbjct: 517 IL 518
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 362 (132.5 bits), Expect = 2.1e-32, P = 2.1e-32
Identities = 98/294 (33%), Positives = 145/294 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ A ++ + GG PQ + +D+VV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
+ +E + + YLVLDEAD M D GF P IRK + VP K QT++
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKR----------QTLM 411
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPS 194
+AT K V+K+ + A + + + +A+ I++ K L Q+L S
Sbjct: 412 YTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILR-S 470
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
G+K+++FC+T + L HG+ ER + LN+F++ G P L
Sbjct: 471 QEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS--GRTPVL 527
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
V TD+AARGLD+ D+ V+ +DFP DY+HR GRT R GA G + +D
Sbjct: 528 VATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 366 (133.9 bits), Expect = 2.1e-32, P = 2.1e-32
Identities = 99/294 (33%), Positives = 146/294 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ A +R T + GG PQ L D+VV TPGR
Sbjct: 508 PTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGR 567
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + + + LVLDEAD M D GF P IRK + + R QT++ +
Sbjct: 568 LNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR--------QTLMYT 619
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-ARHDFIKLSGSENKLEALLQVLEPSLS 196
AT K V+K+ + + + + A+ A ++++ K L Q+L S
Sbjct: 620 ATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR-SQE 678
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNE--NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+G+KV++FC+T R DH V HG+ ER LN+F++ G L
Sbjct: 679 RGSKVIIFCST---KRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRS--GKSCVL 733
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+ TD+AARGLD+ D+ VI +DFP DY+HR GRT R GA G + ++D
Sbjct: 734 IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 361 (132.1 bits), Expect = 3.4e-32, P = 3.4e-32
Identities = 101/313 (32%), Positives = 156/313 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++Q++ + ++ V GG + + + ++VGT GR
Sbjct: 419 PRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGR 478
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
I E+G + ++ VLDEAD M D GFG DI + N S P + QT++
Sbjct: 479 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV----NYDSMPRKENRQTLMF 534
Query: 137 SATMTKAVQK----LVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL- 191
SAT +VQ+ + E IA + +K + +F + SE K + LL++L
Sbjct: 535 SATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQ---EFERCERSEKK-DKLLELLG 590
Query: 192 --------EPSLSK-GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
E S K MVF + + + L+ Q+ + HG +ER E L
Sbjct: 591 IDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALR 650
Query: 243 KFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+F+N G P L+ T +A RGLD+ VDHVI +D P N DY+HR GRT R+G G+ TS
Sbjct: 651 QFRN--GSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATS 708
Query: 302 LVAKKDVLLADRI 314
+++ LL++ +
Sbjct: 709 FISEDCSLLSELV 721
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 361 (132.1 bits), Expect = 3.4e-32, P = 3.4e-32
Identities = 101/313 (32%), Positives = 156/313 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++Q++ + ++ V GG + + + ++VGT GR
Sbjct: 419 PRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGR 478
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
I E+G + ++ VLDEAD M D GFG DI + N S P + QT++
Sbjct: 479 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV----NYDSMPRKENRQTLMF 534
Query: 137 SATMTKAVQK----LVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL- 191
SAT +VQ+ + E IA + +K + +F + SE K + LL++L
Sbjct: 535 SATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQ---EFERCERSEKK-DKLLELLG 590
Query: 192 --------EPSLSK-GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
E S K MVF + + + L+ Q+ + HG +ER E L
Sbjct: 591 IDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALR 650
Query: 243 KFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+F+N G P L+ T +A RGLD+ VDHVI +D P N DY+HR GRT R+G G+ TS
Sbjct: 651 QFRN--GSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATS 708
Query: 302 LVAKKDVLLADRI 314
+++ LL++ +
Sbjct: 709 FISEDCSLLSELV 721
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 97/310 (31%), Positives = 154/310 (49%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ R PR ++L PTREL+ QV+ + + + ++++ V GG Q +L +V
Sbjct: 69 LSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIV 128
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGRI H+E N+ ++ L+LDEAD M D GF P ++ N A+ + Q
Sbjct: 129 ATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAI-----NEAADHKRR--Q 181
Query: 133 TVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T++ SAT+ + + ++ + H+ T H + ++K EALL L
Sbjct: 182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHK-EALLSRL 240
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S +V++F T + + L+ +T GE+ R + +++F G
Sbjct: 241 LSDESH-KQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFAR--GQQ 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+A+RGLDL +V VI FD P + +Y+HR GRT R GAKG SLV KD
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDS 357
Query: 311 ADRIEEAIRK 320
+++ +RK
Sbjct: 358 FKKVQLFLRK 367
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 100/304 (32%), Positives = 156/304 (51%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+++ PTREL+ Q+ R A ++ R +V GG Q L +D+++GT G
Sbjct: 81 QPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEAGVDILIGTCG 140
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ +++ G +I+ +VLDEAD MFD GF DIR + P ++L
Sbjct: 141 RLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKM------PPATERLSMLF 194
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ V++L + + +K S + + +E+K+ L ++E
Sbjct: 195 SATLSFRVKELAFDHMNDPTSVEVEP-EQKTNSRISEELFYPSNEDKMTLLQTLIEEDWP 253
Query: 197 KGNKVMVFCNTLNSSRAV-DHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ K +VF NT + V DH LN ++I G+VP ++R++ L +F DG LV
Sbjct: 254 E--KAIVFANTKHVCEKVFDH-LNADKIRVGLLTGDVPQKKRLKILEEFT--DGTVDILV 308
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGL + V HV +D P + DY+HR GRT R G G SL ++ V I
Sbjct: 309 ATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEI 368
Query: 315 EEAI 318
E I
Sbjct: 369 ETYI 372
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 103/307 (33%), Positives = 147/307 (47%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR +VL PTREL++QV ++ R RS + GG Q L+ P+D +V TP
Sbjct: 72 RGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFIVATP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ ++ ++ ++ LVLDEAD M D GF D+ + A+ P + QT+L
Sbjct: 132 GRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIA------AASPATR--QTLL 183
Query: 136 VSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
+ATM A+ +L E + I T T H+ I H L L L + +
Sbjct: 184 FTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHL--ITD 241
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
SL + ++F T + + L S HG++P R + K G
Sbjct: 242 ESL---RRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQ--GRIR 296
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + HVI FD P + DY+HR GRT R GA G S + +V
Sbjct: 297 LLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYL 356
Query: 312 DRIEEAI 318
RIE I
Sbjct: 357 ARIERYI 363
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 97/310 (31%), Positives = 154/310 (49%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ R PR ++L PTREL+ QV+ + + + ++++ V GG Q +L +V
Sbjct: 69 LSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIV 128
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGRI H+E N+ ++ L+LDEAD M D GF P ++ N A+ + Q
Sbjct: 129 ATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAI-----NEAADHKRR--Q 181
Query: 133 TVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T++ SAT+ + + ++ + H+ T H + ++K EALL L
Sbjct: 182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHK-EALLSRL 240
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S +V++F T + + L+ +T GE+ R + +++F G
Sbjct: 241 LSDESH-KQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFAR--GQQ 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+A+RGLDL +V VI FD P + +Y+HR GRT R GAKG SLV KD
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDS 357
Query: 311 ADRIEEAIRK 320
+++ +RK
Sbjct: 358 FKKVQLFLRK 367
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 97/303 (32%), Positives = 156/303 (51%)
Query: 6 EAMLGVLMKPRRPRAV-VLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
E + + KPR + V+ PTREL+ Q+F VA+ + +V GG R + + L
Sbjct: 102 ELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKL 161
Query: 65 NNPIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
++M++ TPGR+L H+++ V+ ++K L++DEAD + + GF ++R+ + L
Sbjct: 162 MKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL---- 217
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRT-STLHKKIASARHDFIKLSGSE 181
PN + Q++L SAT T V+ L + G + A + S+
Sbjct: 218 --PN-EDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSD 274
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ L L+ + K K++VF ++ NS + LN + + HG+ Q+R
Sbjct: 275 KRFLLLFSFLKRNQKK--KIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 332
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+F N + L+CTD+AARGLD+ VD +I FD P + DY+HR GRTAR G KGK
Sbjct: 333 FEFCNAERGI--LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGK 389
Query: 301 SLV 303
SL+
Sbjct: 390 SLM 392
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 359 (131.4 bits), Expect = 4.4e-32, P = 4.4e-32
Identities = 97/308 (31%), Positives = 156/308 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGR-LRPQEDSLNNPIDMVV 72
K + P A+VL PTRELS Q+F ++ ++ S ++ GG + Q L +++
Sbjct: 312 KKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILI 371
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR++ ++ G + +YLVLDEAD M D GF P IR+ +V NR P+ +
Sbjct: 372 ATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQ-IVEC-NRM--PSKEERI 427
Query: 133 TVLVSATMTKAVQKLVDEEC-QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T + SAT K +Q L + + L + + + + E K L+ +L
Sbjct: 428 TAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDE-KRSYLMDLL 486
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + + +VF T + + ++LN V HG++ ER ++L+ F+ G
Sbjct: 487 DAT-GDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRT--GTA 543
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P LV T +AARGLD+ +V HVI +D P + +Y+HR GRT R+G G TS K+ +
Sbjct: 544 PILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNI 603
Query: 311 ADRIEEAI 318
A + + I
Sbjct: 604 ARELMDLI 611
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 360 (131.8 bits), Expect = 5.1e-32, P = 5.1e-32
Identities = 95/303 (31%), Positives = 155/303 (51%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
+L +PR+ P R +L PTREL+ Q + VA ++ + + GG LR QE+ L
Sbjct: 360 LLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKR 419
Query: 68 IDMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR + H+ + + ++ LVLDEAD M + GF ++ + L + P
Sbjct: 420 PDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTI------P 473
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS-GSENKLE 185
+ QT+L SATMT +V KL+ L T + +F++L G E+K
Sbjct: 474 KSR--QTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRL 531
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L L + G +V+VF + V + HG + ++R++++ F+
Sbjct: 532 GYLLHLCKEVYTG-RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFR 590
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG+ L+ TDLA+RGLD+ V+ VI ++ P + Y+HR GRTAR G G+ ++ A
Sbjct: 591 --DGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAA 648
Query: 305 KKD 307
+ D
Sbjct: 649 EPD 651
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 354 (129.7 bits), Expect = 5.6e-32, P = 5.6e-32
Identities = 96/308 (31%), Positives = 153/308 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTM----VSGGGRLRPQEDSLNNPIDMVVG 73
P+A+VL PTREL+ QV A++ + + S + + GG Q L +VVG
Sbjct: 82 PQALVLVPTRELALQV---AEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVG 138
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ H+E + + +LVLDEAD M GF D+ + L + P + Q
Sbjct: 139 TPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERIL------SETPEYK--QV 190
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SATM A++KL + + + +I+++ K++AL +VLE
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA---RKMDALTRVLE- 246
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++VF T ++ + L S G+VP +R + + DGD
Sbjct: 247 -VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALR--DGDIDI 303
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD++ + HV+ +D P ++ Y+HR GRT R G G V+ +++ L
Sbjct: 304 LVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLK 363
Query: 313 RIEEAIRK 320
IE+A R+
Sbjct: 364 AIEKATRQ 371
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 359 (131.4 bits), Expect = 5.9e-32, P = 5.9e-32
Identities = 92/313 (29%), Positives = 160/313 (51%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R R ++L PTREL+ Q V ++++ + S ++ GG + QE L D+V+ TP
Sbjct: 260 RAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATP 319
Query: 76 GRILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
GR++ H+ + + + D++ L+LDEAD + D GF +I K + S P + QT+
Sbjct: 320 GRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIV------ESCPTNR--QTM 371
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE--NKLEALLQVLE 192
L SAT+ V+ L Q ++ L + ++ +F+K+ ++ LL +
Sbjct: 372 LFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCT 431
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
++G + +FC + + + + HG + ++R ++L +F+ DG
Sbjct: 432 RVFNQGGTI-IFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFR--DGQVN 488
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLL 310
L+ +D+A+RGLD+ V VI ++ P N +Y+HR GRTAR G GK S + D LL
Sbjct: 489 YLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLL 548
Query: 311 ADRIEEAIRKNES 323
D + +A K +S
Sbjct: 549 KDIVTKARNKAKS 561
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 100/306 (32%), Positives = 156/306 (50%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISH-HARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P +VL PTREL+ QV A+ + + + F+S + GGG + Q + + +D+V+ TPG
Sbjct: 128 PGMLVLAPTRELALQV--EAECLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVIATPG 185
Query: 77 RILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
R L ++ N + I YLVLDEAD M D GF P I K L+ ++ P+ Q TV+
Sbjct: 186 R-LNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVR-----PDRQ---TVM 236
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
+SAT V++L + + TL ++ +++ + +QV S
Sbjct: 237 MSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVLKYLQFD-KDIFTWKYMQVNAQSF 295
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ V+VF + + L + + HG+ +R + L+ FK G LV
Sbjct: 296 CT-DVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKK--GKVRILV 352
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TDLA+RGLD+ D+ HV FDFP N +Y+HR GRT R G GK +L+ KKD A +
Sbjct: 353 ATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASEL 412
Query: 315 EEAIRK 320
+ +++
Sbjct: 413 IDILQR 418
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 358 (131.1 bits), Expect = 6.7e-32, P = 6.7e-32
Identities = 102/285 (35%), Positives = 153/285 (53%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM-VSGGGRLRPQEDSLNNPIDMVVGT 74
R P+ +VL PTREL++QV K I A + ST+ V GG Q+ +L +D+VVGT
Sbjct: 179 RLPKFLVLAPTRELAKQV---EKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGT 235
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGRI+ IE ++ G+++YLVLDEAD M GF + L +N +K Q++
Sbjct: 236 PGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESIL---ENLPTKR-----QSM 287
Query: 135 LVSATMTKAVQKLVDEECQGIAHLR-TSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SATM V+KL + ++ +K+A + + S +K +L L
Sbjct: 288 LFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSK-RTILSDLIT 346
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+KG K +VF T + V L+ N I+T HG++ +R LN F+ G
Sbjct: 347 VYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ--GKFTV 403
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
LV TD+A+RGLD+ +VD VI ++ P + ++HR+GRT R G +G
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG 448
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 353 (129.3 bits), Expect = 7.4e-32, P = 7.4e-32
Identities = 98/305 (32%), Positives = 154/305 (50%)
Query: 22 VLC--PTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
VLC PTREL+ Q++ ++ + V GG Q + ++VV TPGR++
Sbjct: 226 VLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLV 284
Query: 80 QHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139
I DG + G + YLVLDEAD M ++GF DI+ + ++ N + QT++ +AT
Sbjct: 285 DLINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTII------SNTSNSER-QTLMFTAT 337
Query: 140 MTKAVQKLVDEECQGIAHLRTSTLHKKIASARH----DFIKLSGSENKLEALLQVLEPSL 195
K V++L + + + A+ R + I E KL LL+ +
Sbjct: 338 WPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANE 397
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
S NK+++F + +++FL N+ S HG++ Q+R L+ FK+ G L+
Sbjct: 398 SSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKS--GQSNLLL 455
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ +V VI FPL DY+HR GRT R GAKG +L + + L+ +
Sbjct: 456 ATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGAL 515
Query: 315 EEAIR 319
+R
Sbjct: 516 CNILR 520
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 95/290 (32%), Positives = 157/290 (54%)
Query: 8 MLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L L++ P+R A+VL PTREL+ Q+ +++ + ++ GG Q +L
Sbjct: 81 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 140
Query: 67 PIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+V+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +
Sbjct: 141 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI------ 194
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
P + +T L SATMTK VQKL + S+ ++ + + ++ + S+ K
Sbjct: 195 PRDR--KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIP-SKFKDT 251
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L L+ GN M+FC+T N+++ L + + HG++ +R+ +LNKFK
Sbjct: 252 YLVYILN-ELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFK 309
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMG 294
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G
Sbjct: 310 AKARSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG 357
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 353 (129.3 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 99/301 (32%), Positives = 156/301 (51%)
Query: 15 PRRPRAV-VLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
PR V V+CPTREL+ Q VA+ + HH++ S MV GG R + + + ++V+
Sbjct: 158 PRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVS-MVIGGNNRRSEAQRIASGSNLVI 216
Query: 73 GTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
TPGR+L H+++ +Y +K LV+DEAD + + F D+ K L L P +
Sbjct: 217 ATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKIL------PKTR-- 268
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-ARHDFIKLSGSENKLEALLQV 190
QT L SAT T V+ L H+ +K+ + + S+ +L L+
Sbjct: 269 QTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISF 328
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF-KNEDG 249
L+ +L+K K+MVF +T S + + + + + HG + R + F K + G
Sbjct: 329 LKKNLNK--KIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKG 386
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR-MGAKGKVTSLVAKKD 307
L+CTD+AARGLD+ VD +I +D P +Y+HR GRTAR GAKGK ++ ++
Sbjct: 387 ---ILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEE 443
Query: 308 V 308
+
Sbjct: 444 L 444
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 357 (130.7 bits), Expect = 8.3e-32, P = 8.3e-32
Identities = 101/306 (33%), Positives = 158/306 (51%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL+ QVF+V + +S + + +GG L+ QE +L + D+VV TPGR+
Sbjct: 221 RVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL 280
Query: 79 LQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ H+ + + +I+ LVLDEAD M + F + + L+ L Q QT+L S
Sbjct: 281 IDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNE-LIRLC-------AQNRQTLLFS 332
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEALLQVLEPSLS 196
ATMT+ + +L Q + + R +FI++ +G E EA++ L
Sbjct: 333 ATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTF 392
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ N + VF T + + L I + +R+E+L+KFK + D LV
Sbjct: 393 QTNTI-VFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEID--VLVS 449
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TDLA+RGLD++ V VI + P + Y+HR GRTAR G G+ SLV + + L ++
Sbjct: 450 TDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKL---LK 506
Query: 316 EAIRKN 321
E + N
Sbjct: 507 EIVNSN 512
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 353 (129.3 bits), Expect = 8.6e-32, P = 8.6e-32
Identities = 101/309 (32%), Positives = 165/309 (53%)
Query: 6 EAMLGVLMKPRRPRAVVLC-PTRELSEQVFRVAKSIS--HHARFRSTMVSGGGRLRPQED 62
E + + KPR V++ PTREL+ Q+F VAK + HH F +V GG R + D
Sbjct: 149 EMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFG--IVIGGANRRAEAD 206
Query: 63 SLNNPIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPL 119
L ++++V TPGR+L H+++ V+ +++ LV+DEAD + + GF ++R+ + +P
Sbjct: 207 KLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLH--KKIASARHDFIK 176
+NR QT+L SAT T V+ L + G ++ + + ++
Sbjct: 267 ENR---------QTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVV 317
Query: 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
+ S+ + L L+ +L K KV+VF ++ S + + LN + ++ HG+ Q
Sbjct: 318 VD-SDKRFLLLFSFLKRNLKK--KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQR 374
Query: 237 RVENLNKFKN-EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMG 294
R +F N E G L+CT++AARGLD+ VD ++ +D P + DY+HR GRTAR G
Sbjct: 375 RTNTFFEFCNAEKG---ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-G 430
Query: 295 AKGKVTSLV 303
KG SL+
Sbjct: 431 TKGTGKSLM 439
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 350 (128.3 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 99/304 (32%), Positives = 152/304 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R + +V+ PTREL+ Q++ ++ + V GG Q L +VV
Sbjct: 179 KKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVA 237
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L +++G++ + YLVLDEAD M ++GF DI+ + + ASK QT
Sbjct: 238 TPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNII--RETDASKR-----QT 290
Query: 134 VLVSATMTKAVQKLVDEECQG-----IAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
++ +AT K V++L I + T +K+I + + G E KL LL
Sbjct: 291 LMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIV-EVVDPRGKERKLLELL 349
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+ K KV++F + V+ L N + HG++ Q+R + LN+FK+
Sbjct: 350 KKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKS-- 407
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G L+ TD+AARGLD+ +V VI FPL DY+HR GRT R G G +L +++
Sbjct: 408 GKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
Query: 308 VLLA 311
LA
Sbjct: 468 KHLA 471
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 350 (128.3 bits), Expect = 9.4e-32, P = 9.4e-32
Identities = 103/310 (33%), Positives = 161/310 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+EQ+ + S ++ R+T GG Q +L + +++ PGR
Sbjct: 187 PIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGR 246
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLVLDEAD M D GF IRK + ++ P+ Q T++ S
Sbjct: 247 LIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR-----PDRQ---TLMWS 298
Query: 138 ATMTKAVQKLVDEEC--QGI-AHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT K VQ L + C Q I ++ + TL S + + L E K+ L +L+
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTL-TACRSIKQEIYLLEEHE-KIGNLKSLLQRI 356
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++++VF T ++ + L + + + HG+ +ER LN+FK G P +
Sbjct: 357 FKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKT--GKSPIM 414
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG-KVTSLVAKKDVLLAD 312
+ TD+A+RGLD+ +V +VI FDFP DY+HR GRT R G+ G T L A K L D
Sbjct: 415 IATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKD 474
Query: 313 RIEEAIRKNE 322
++ +R++E
Sbjct: 475 LVK-ILRESE 483
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 350 (128.3 bits), Expect = 9.4e-32, P = 9.4e-32
Identities = 103/310 (33%), Positives = 161/310 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+EQ+ + S ++ R+T GG Q +L + +++ PGR
Sbjct: 187 PIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGR 246
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLVLDEAD M D GF IRK + ++ P+ Q T++ S
Sbjct: 247 LIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR-----PDRQ---TLMWS 298
Query: 138 ATMTKAVQKLVDEEC--QGI-AHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT K VQ L + C Q I ++ + TL S + + L E K+ L +L+
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTL-TACRSIKQEIYLLEEHE-KIGNLKSLLQRI 356
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++++VF T ++ + L + + + HG+ +ER LN+FK G P +
Sbjct: 357 FKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKT--GKSPIM 414
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG-KVTSLVAKKDVLLAD 312
+ TD+A+RGLD+ +V +VI FDFP DY+HR GRT R G+ G T L A K L D
Sbjct: 415 IATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKD 474
Query: 313 RIEEAIRKNE 322
++ +R++E
Sbjct: 475 LVK-ILRESE 483
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 357 (130.7 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 96/303 (31%), Positives = 152/303 (50%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
+L +P++ P R V+L PTREL+ Q VA ++ H + + GG L+ QE L
Sbjct: 317 LLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLR 376
Query: 68 IDMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR + H+ + + ++ LVLDEAD M + GF ++ + L L P
Sbjct: 377 PDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTL------P 430
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS-GSENKLE 185
+ QT+L SATMT +V L+ L + K + + +F++L G E K
Sbjct: 431 KSR--QTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRM 488
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L L +L +V++F + +S HG + +R++++ F+
Sbjct: 489 GYLVYLCKNLYT-ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFR 547
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG L+ TDLA+RGLD+ VD VI ++ P + Y+HR GRTAR G G +L A
Sbjct: 548 --DGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAA 605
Query: 305 KKD 307
+ D
Sbjct: 606 EPD 608
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 354 (129.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 95/315 (30%), Positives = 159/315 (50%)
Query: 10 GVLMKPRR--PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
G+ +PR+ P ++L PTREL Q+ ++ + + R V GG +R Q ++
Sbjct: 246 GMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
Query: 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN 127
D++ TPGR++ I+ G + +IK+LVLDEAD M D GF P IR + A +
Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIV----EGADMTS 361
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
+ QT++ SAT + +Q L + + L + + + + SE K L
Sbjct: 362 VEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE-KRSYL 420
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAV-DHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L +L +L ++F T + + D+ LN N +T + HG+ +ER L F++
Sbjct: 421 LDILH-TLPPEGLTLIFVETKRMADTLTDYLLNSNFPAT-SIHGDRTQRERERALELFRS 478
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G +V T +A+RGLD+ +V HVI +D P + DY+HR GRT R G G+ + +
Sbjct: 479 --GRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNR 536
Query: 306 KDVLLADRIEEAIRK 320
+ +A + E +++
Sbjct: 537 NNKGIAKELIELLQE 551
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 354 (129.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 97/306 (31%), Positives = 157/306 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISH-HARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P +VL PTREL+ QV A+ + + + F+S + GGG + Q + + +D+V+ TPG
Sbjct: 315 PGMLVLAPTRELALQV--EAECLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVIATPG 372
Query: 77 RILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
R L ++ N + I YL +EAD M D GF P I K L+ ++ P+ Q TV+
Sbjct: 373 R-LNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVR-----PDRQ---TVM 422
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
+SAT V++L + + TL + + + E K +A ++ S+
Sbjct: 423 MSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEK-KAFMENFIDSM 481
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+K ++F +++ + L + + HG+ +R + L+ FK G LV
Sbjct: 482 KPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKK--GKVRILV 539
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TDLA+RGLD+ D+ HV FDFP N +Y+HR GRT R G GK +L+ KKD A +
Sbjct: 540 ATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASEL 599
Query: 315 EEAIRK 320
+ +++
Sbjct: 600 IDILQR 605
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 102/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++QV+ +S+ + +T+++GG Q +L +V TPGR
Sbjct: 78 PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ H++ ++ ++ LVLDEAD M D GF ++R+ K+R QT++ S
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR-------QTLMFS 190
Query: 138 ATMTKA-VQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
AT+ A V + E E + IA S HK I +H F ++K EALL +
Sbjct: 191 ATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDIT--QH-FYLCDHLDHK-EALLDRILA 246
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ +V++F T + + LN+N + V G + +R + +F E
Sbjct: 247 D-AEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQF--ERAVFKI 303
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A+RGLD+ V HVI FD P ++ +Y+HR GRT R G KG SLV KD
Sbjct: 304 LVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFK 363
Query: 313 RIEEAIRK 320
R+E +++
Sbjct: 364 RVEAFLQQ 371
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 102/308 (33%), Positives = 160/308 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++QV+ +S+ + +T+++GG Q +L +V TPGR
Sbjct: 78 PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ H++ ++ ++ LVLDEAD M D GF ++R+ K+R QT++ S
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR-------QTLMFS 190
Query: 138 ATMTKA-VQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
AT+ A V + E E + IA S HK I +H F ++K EALL +
Sbjct: 191 ATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDIT--QH-FYLCDHLDHK-EALLDRILA 246
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ +V++F T + + LN+N + V G + +R + +F E
Sbjct: 247 D-AEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQF--ERAVFKI 303
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A+RGLD+ V HVI FD P ++ +Y+HR GRT R G KG SLV KD
Sbjct: 304 LVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFK 363
Query: 313 RIEEAIRK 320
R+E +++
Sbjct: 364 RVEAFLQQ 371
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 357 (130.7 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 104/307 (33%), Positives = 153/307 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+F AK + ++ GG ++ Q +L+ D++V TPGR
Sbjct: 452 PICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGR 511
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL----VP-----LKNRASKPNG 128
+ +E G + +LVLDEAD M D GF P IR + +P + +K
Sbjct: 512 LNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEY 571
Query: 129 QGF-------QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS--- 178
+ + QT++ SAT K +Q L E L L K+ S +++IK +
Sbjct: 572 KKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFL----LVGKVGST-NEYIKQNLVF 626
Query: 179 -GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
ENK LL +L + + G ++ F T + ++ FL+ +++ V HG+ ER
Sbjct: 627 VEEENKCNYLLNLLAEN-NNGLTIL-FVETKRKADIIERFLSNQKLNAVCIHGDKSQDER 684
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L FK G LV TD+AARGLD+ ++ HVI FD P N DY+HR GRT R G
Sbjct: 685 ERALKLFKR--GIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNI 742
Query: 297 GKVTSLV 303
G TS V
Sbjct: 743 GIATSFV 749
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 357 (130.7 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 104/307 (33%), Positives = 153/307 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+F AK + ++ GG ++ Q +L+ D++V TPGR
Sbjct: 452 PICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGR 511
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL----VP-----LKNRASKPNG 128
+ +E G + +LVLDEAD M D GF P IR + +P + +K
Sbjct: 512 LNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEY 571
Query: 129 QGF-------QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS--- 178
+ + QT++ SAT K +Q L E L L K+ S +++IK +
Sbjct: 572 KKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFL----LVGKVGST-NEYIKQNLVF 626
Query: 179 -GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
ENK LL +L + + G ++ F T + ++ FL+ +++ V HG+ ER
Sbjct: 627 VEEENKCNYLLNLLAEN-NNGLTIL-FVETKRKADIIERFLSNQKLNAVCIHGDKSQDER 684
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L FK G LV TD+AARGLD+ ++ HVI FD P N DY+HR GRT R G
Sbjct: 685 ERALKLFKR--GIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNI 742
Query: 297 GKVTSLV 303
G TS V
Sbjct: 743 GIATSFV 749
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 357 (130.7 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 95/293 (32%), Positives = 150/293 (51%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPID 69
+++ P A+VL PTREL++Q+ V + H + R T + GG PQ L+ ++
Sbjct: 305 IIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVE 364
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+++ TPGR++ +E+ N YLVLDEAD M D GF P IRK + ++ P+ Q
Sbjct: 365 VIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR-----PDRQ 419
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF---IKLSGSENK--- 183
V+ SAT K VQ L + + +++ SA H+ +++ K
Sbjct: 420 ---VVMWSATWPKEVQALAGDFLNDYIQINIGSMN---LSANHNIRQIVEICTEIEKPQR 473
Query: 184 LEALLQVLEP---SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
L LL + P S + GNK++VF T + + + + HG+ ER
Sbjct: 474 LVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSV 533
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292
L F+N G L+ TD+A+RGLD+ D+ +VI +D+P +S +Y+HR GRT R
Sbjct: 534 LKDFRN--GKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGR 584
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 102/315 (32%), Positives = 159/315 (50%)
Query: 14 KPRRPR----AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
K RRP A VL PTREL+ Q+ +++ R ++ GG Q +L
Sbjct: 82 KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPH 141
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
++V TPGR+ H+ D +KYLVLDEAD + + F + + L +PL+ +
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERK---- 197
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
T L SATMTK V+KL + + ++ + + + + + + ++ K
Sbjct: 198 ------TFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY-RFVAAKYKDCY 250
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L+ +L + + M+F T + +R + L + G++ +R+ LNKFK
Sbjct: 251 LVYILS-EMPESTS-MIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKA 308
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G+C LVCTD+A+RGLD+ VD VI +D P NS DY+HR GRTAR G G SLV +
Sbjct: 309 --GECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 306 KDVLLADRIEEAIRK 320
++ +IE+ I K
Sbjct: 367 YELEWYIQIEKLIGK 381
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 353 (129.3 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 88/293 (30%), Positives = 149/293 (50%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ S+ R ++ GG ++ ++ +++ TP
Sbjct: 362 KEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATP 421
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I + ++YLVLDEAD M D GF DI L + P+ + QT++
Sbjct: 422 GRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLL----KSSGMPSKEERQTLM 477
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT ++Q L E + + + + I++ K + L+++L+
Sbjct: 478 FSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVD-EFGKKDKLMEILQEI 536
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+ + MVF T + + FL + ++ + + HG+ +ER L F+ G CP +
Sbjct: 537 GSE--RTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRT--GQCPVI 592
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
V T +AARGLD++ V +VI FD P + +Y+HR GRT R G G+ S K+
Sbjct: 593 VATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKR 645
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 347 (127.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 100/325 (30%), Positives = 169/325 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN-P-IDMVVGTP 75
PR +VL P+REL++QV VA+ + + GG +R L+ P D++V TP
Sbjct: 204 PRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATP 263
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG--QGF-- 131
G + + ++ + + +LVLDEADT+ D F ++ +++ + A P F
Sbjct: 264 GALWKALKSRLISLEQLSFLVLDEADTLLDESF-LELVDYILEKSHIAEGPADLEDPFNP 322
Query: 132 --QTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
Q VLV AT + V +L+++ + + +S LH + + F++L G++ K+ L
Sbjct: 323 KAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGAD-KVAEL 381
Query: 188 LQVLE-----PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
+ +L+ V+VFCN+ ++ + + L++++I + G++PA RV
Sbjct: 382 VHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQ 441
Query: 243 KFKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GKV 299
F+ D L+CTD+A+RGLD V+ V+ +DFP DY+HR GR R+G++ G V
Sbjct: 442 SFQKSSRDI--LLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTV 499
Query: 300 TSLVAKK-DVLLADRIEEAIRKNES 323
S V DV L +IE A R+ S
Sbjct: 500 ISFVTHPWDVSLVQKIELAARRRRS 524
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 100/311 (32%), Positives = 150/311 (48%)
Query: 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ 80
++L PTREL+ Q+ ++ + + +V GG Q +L V+ TPGR+
Sbjct: 73 LILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGRLAD 132
Query: 81 HI-EDGN-MVYG--DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
HI G + G +KYLVLDEAD + FG D+++ L P QT+L
Sbjct: 133 HILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVL------PTSDKRQTLLF 186
Query: 137 SATMTKAVQKLVDEE-CQG----IAHLRTSTLHK-KIASARHDFIKLSGSENKLEALLQV 190
+AT+T AV+ L ++ G H T+ K I S S K L +
Sbjct: 187 TATITDAVRALKEKPPTPGKPPVFMH-EVETVDKVAIPSTLQISYVFVPSYVKEAYLNSI 245
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L K + ++F N ++ + L + + H E+P ER +L++FK G
Sbjct: 246 LHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKA--GA 303
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
L+ TD+A+RGLD+ V+ VI FD P + D++HR GRTAR G KG S++ +KD+
Sbjct: 304 ARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDID 363
Query: 310 LADRIEEAIRK 320
IEE I K
Sbjct: 364 RIQSIEERINK 374
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 91/311 (29%), Positives = 153/311 (49%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
A+ V + R P+ ++L PTREL++Q+ +VA ++S + GG L L
Sbjct: 90 ALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLET 149
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
+ +V GTPGR+L I ++ IK ++LDEAD M GF I L P
Sbjct: 150 GVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYL------P 203
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
NG Q VLVSAT+T+ V + ++ + + + F+ + + K
Sbjct: 204 NGT--QIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGT 261
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L + + SL+ + ++FCNT + + + + + HG++ +ER E + F++
Sbjct: 262 LCDIYD-SLTI-TQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRS 319
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G+ L+ TD+ ARG+D+ V VI +D P++ +Y+HR GR+ R G KG + V
Sbjct: 320 --GENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKN 377
Query: 306 KDVLLADRIEE 316
D+ + IE+
Sbjct: 378 SDIRILRDIEQ 388
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 99/305 (32%), Positives = 154/305 (50%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+++ PTREL+ Q+F A+ + ++ + GG Q L + +D+++GT G
Sbjct: 84 QPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ + I+ +VLDEAD MFD GF DIR FL R +P + +L
Sbjct: 144 RIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR-FLF---RRMPEPKDR--LNMLF 197
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ VQ+L E H+ +K + + +E+K+ ALLQ L
Sbjct: 198 SATLSYRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEHKM-ALLQTLIEE-E 254
Query: 197 KGNKVMVFCNTLNSSRAV-DHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ ++F NT + + H +N ++ + G+VP ++R L +F GD L
Sbjct: 255 WPDRAIIFANTKHRCEQIWAHLAADNHRVGLLT--GDVPQKKRERILEQFTQ--GDVDIL 310
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGL + V HV +D P + DY+HR GRT R GA G S ++ +
Sbjct: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
Query: 314 IEEAI 318
IE I
Sbjct: 371 IESYI 375
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 99/305 (32%), Positives = 154/305 (50%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+++ PTREL+ Q+F A+ + ++ + GG Q L + +D+++GT G
Sbjct: 84 QPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ + I+ +VLDEAD MFD GF DIR FL R +P + +L
Sbjct: 144 RIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR-FLF---RRMPEPKDR--LNMLF 197
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ VQ+L E H+ +K + + +E+K+ ALLQ L
Sbjct: 198 SATLSYRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEHKM-ALLQTLIEE-E 254
Query: 197 KGNKVMVFCNTLNSSRAV-DHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ ++F NT + + H +N ++ + G+VP ++R L +F GD L
Sbjct: 255 WPDRAIIFANTKHRCEQIWAHLAADNHRVGLLT--GDVPQKKRERILEQFTQ--GDVDIL 310
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGL + V HV +D P + DY+HR GRT R GA G S ++ +
Sbjct: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
Query: 314 IEEAI 318
IE I
Sbjct: 371 IESYI 375
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 350 (128.3 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 103/313 (32%), Positives = 155/313 (49%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P +VL PTREL+ QV S+ +S + GGG + Q + +D+++
Sbjct: 286 KRNGPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGNRKGQIQDIMKGVDIIIA 344
Query: 74 TPGRILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR L ++ N V I YLVLDEAD M D GF I K L+ ++ P+ Q
Sbjct: 345 TPGR-LNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVR-----PDRQ--- 395
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T++ SAT +++L + + TL I ++ E K +L Q
Sbjct: 396 TIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEK-RSLFQEFL 454
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
SLS +KV+VF + + + L+ I + HG+ +R L+ FK G
Sbjct: 455 QSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKT--GKVK 512
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+ TDLA+RGLD+ DV HV ++FP N +Y+HR GRT R G G+ +L+ + D +A
Sbjct: 513 ILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVA 572
Query: 312 DRIEEAI-RKNES 323
+ E + R N+S
Sbjct: 573 GELIEILQRANQS 585
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 350 (128.3 bits), Expect = 2.8e-31, P = 2.8e-31
Identities = 103/313 (32%), Positives = 155/313 (49%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P +VL PTREL+ QV S+ +S + GGG + Q + +D+++
Sbjct: 295 KRNGPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGNRKGQIQDIMKGVDIIIA 353
Query: 74 TPGRILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR L ++ N V I YLVLDEAD M D GF I K L+ ++ P+ Q
Sbjct: 354 TPGR-LNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVR-----PDRQ--- 404
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T++ SAT +++L + + TL I ++ E K +L Q
Sbjct: 405 TIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEK-RSLFQEFL 463
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
SLS +KV+VF + + + L+ I + HG+ +R L+ FK G
Sbjct: 464 QSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKT--GKVK 521
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+ TDLA+RGLD+ DV HV ++FP N +Y+HR GRT R G G+ +L+ + D +A
Sbjct: 522 ILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVA 581
Query: 312 DRIEEAI-RKNES 323
+ E + R N+S
Sbjct: 582 GELIEILQRANQS 594
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 352 (129.0 bits), Expect = 3.1e-31, P = 3.1e-31
Identities = 99/315 (31%), Positives = 166/315 (52%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ P R +VL PTREL QV V K ++ + + + GG ++ QE +L +
Sbjct: 242 LIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSG 301
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + ++ L+LDEAD M D F +++ ++ L +R
Sbjct: 302 PDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKE-IIRLCSRHR-- 358
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT+ V+ L + + ++ R +FI++ + E E
Sbjct: 359 -----QTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 413
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + + + VM+F T + + L + HG + +R+E L +FK
Sbjct: 414 AIVSALL-TRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFK 472
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+E D LV TD+AARGLD++ V VI F P + Y+HR GRTAR G G+ SLV
Sbjct: 473 DEQIDI--LVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVG 530
Query: 305 KKDVLLADRIEEAIR 319
+++ + I +A +
Sbjct: 531 EEERKMLKEIVKAAK 545
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 352 (129.0 bits), Expect = 3.1e-31, P = 3.1e-31
Identities = 99/315 (31%), Positives = 166/315 (52%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ P R +VL PTREL QV V K ++ + + + GG ++ QE +L +
Sbjct: 243 LIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSG 302
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + ++ L+LDEAD M D F +++ ++ L +R
Sbjct: 303 PDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKE-IIRLCSRHR-- 359
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT+ V+ L + + ++ R +FI++ + E E
Sbjct: 360 -----QTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 414
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + + + VM+F T + + L + HG + +R+E L +FK
Sbjct: 415 AIVSALL-TRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFK 473
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+E D LV TD+AARGLD++ V VI F P + Y+HR GRTAR G G+ SLV
Sbjct: 474 DEQIDI--LVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVG 531
Query: 305 KKDVLLADRIEEAIR 319
+++ + I +A +
Sbjct: 532 EEERKMLKEIVKAAK 546
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 348 (127.6 bits), Expect = 3.8e-31, P = 3.8e-31
Identities = 96/314 (30%), Positives = 166/314 (52%)
Query: 6 EAMLGVLMKPRRPRAVVLC-PTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDS 63
E ++ KPR V++ PTREL+ Q++ VA+ + +H + ++ GG +P+E+
Sbjct: 179 EVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVI-GGASKKPEEER 237
Query: 64 LNNPIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLK 120
L ++++V TPGR+L H+++ + ++K L++DEAD + + GF ++ + + VP K
Sbjct: 238 LEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVP-K 296
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR---HDFIKL 177
R QT+L SAT T+ V + ++I++ ++ +
Sbjct: 297 TR---------QTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYV-V 346
Query: 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
SE + L L+ +LSK K++VF ++ N+ + LN I + HG Q+R
Sbjct: 347 CPSERRFLLLYTFLKKNLSK--KIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKR 404
Query: 238 VENLNKFKN-EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR-MG 294
+F N E G L+CTD+AARGLD+ VD +I +D P + +Y+HR GRTAR +G
Sbjct: 405 TNTFYEFVNAEKG---ILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVG 461
Query: 295 AKGKVTSLVAKKDV 308
KG+ + K++
Sbjct: 462 KKGRALLFLLPKEL 475
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 350 (128.3 bits), Expect = 4.4e-31, P = 4.4e-31
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++Q++ + S+ + V GG + + + ++VGT GR
Sbjct: 376 PRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGR 435
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
+ EDG + +YLVLDEAD M D GFGP+I + + N + P QT++
Sbjct: 436 VKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQII----NYKNMPKNDKRQTMMF 491
Query: 137 SATMTKAVQ----KLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV-L 191
SAT +VQ KL+ E+ I + +K + + + +KL LL + +
Sbjct: 492 SATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQ-EFELCDRTSKVDKLLKLLGIDI 550
Query: 192 EPSLSKGN------KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
+ ++ N K +VF + + ++ Q+ + HG +ER L F+
Sbjct: 551 DTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFR 610
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ G P L+ T + RGLD+ VDHVI +D P N DY+HR GRT R+G G+ TS ++
Sbjct: 611 S--GAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFIS 668
Query: 305 KKD 307
D
Sbjct: 669 LAD 671
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 350 (128.3 bits), Expect = 4.4e-31, P = 4.4e-31
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL++Q++ + S+ + V GG + + + ++VGT GR
Sbjct: 376 PRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGR 435
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
+ EDG + +YLVLDEAD M D GFGP+I + + N + P QT++
Sbjct: 436 VKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQII----NYKNMPKNDKRQTMMF 491
Query: 137 SATMTKAVQ----KLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV-L 191
SAT +VQ KL+ E+ I + +K + + + +KL LL + +
Sbjct: 492 SATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQ-EFELCDRTSKVDKLLKLLGIDI 550
Query: 192 EPSLSKGN------KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
+ ++ N K +VF + + ++ Q+ + HG +ER L F+
Sbjct: 551 DTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFR 610
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ G P L+ T + RGLD+ VDHVI +D P N DY+HR GRT R+G G+ TS ++
Sbjct: 611 S--GAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFIS 668
Query: 305 KKD 307
D
Sbjct: 669 LAD 671
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 344 (126.2 bits), Expect = 4.5e-31, P = 4.5e-31
Identities = 107/317 (33%), Positives = 158/317 (49%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
AV+L PTREL+ Q+F K+IS + +++GG +R Q L +VV TPGR+
Sbjct: 166 AVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLA 225
Query: 80 QHIEDG--NMVYG--DIKYLVLDEADTMFDRGFG---PDIRKFLVPLKNRASKPNGQGFQ 132
HI + V G ++ +VLDEAD + G G PD+ L L + + Q
Sbjct: 226 DHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPSQR------Q 279
Query: 133 TVLVSATMTKAVQKLVD-EECQG-----IAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
T+L +AT+T V+ L + G + + T + R ++++ + EA
Sbjct: 280 TLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPLTHR--EA 337
Query: 187 LLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L VL + S K +VF NT S+ ++ L + H +P ER NL +F+
Sbjct: 338 FLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLARFR 397
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
LV TD+A+RGLD+ V V+ F+ P N DY+HR GRTAR G G+ +LV
Sbjct: 398 ASAAR--VLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVG 455
Query: 305 KKDVLLADRIEEAI-RK 320
++DV L IEE I RK
Sbjct: 456 QRDVQLVLAIEERIGRK 472
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 349 (127.9 bits), Expect = 4.5e-31, P = 4.5e-31
Identities = 99/321 (30%), Positives = 155/321 (48%)
Query: 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISH-------HARFRSTMVSGGGRL 57
+E L ++ + P ++LCP+REL+ Q + + S ++ H + R+ + GG L
Sbjct: 287 EECKLPII-QGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDL 345
Query: 58 RPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLV 117
R QE + M++ TPGR+L + + + KYL LDEAD + D GF DIR L
Sbjct: 346 REQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLD 405
Query: 118 PLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDF 174
N+ QT+L SATM K +Q+ + R + + +F
Sbjct: 406 NFTNQR--------QTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQ-EVEF 456
Query: 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPA 234
+K E K+ LL+ L+ + V++FC + +L Q+ V+ HG+
Sbjct: 457 VK---PEAKIVYLLECLQKTPPP---VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQ 510
Query: 235 QERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 293
ER + F+ +G LV TD+A++GLD ++ HVI FD P +Y+HR GRT R
Sbjct: 511 DERESAIKAFR--EGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRR 568
Query: 294 GAKGKVTSLVAKKDV--LLAD 312
G KG T+ + K + LL D
Sbjct: 569 GNKGVATTFINKNNTESLLLD 589
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 106/310 (34%), Positives = 164/310 (52%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFR-STMV---SGGGRLRPQEDSLNNPIDMVVGT 74
+A+VLCPTREL++QV A + ARF +T + GG Q DSL + ++V T
Sbjct: 73 QALVLCPTRELADQV---AGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVAT 129
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGP---DIRKFLVPLKNRASKPNGQGF 131
PGR+L H++ G + + LV+DEAD M D GF D+ +F P AS+
Sbjct: 130 PGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRF-AP----ASR------ 178
Query: 132 QTVLVSATMTKAVQKLVDE-ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+L SAT +A+ + + +A ST + F + S S+ K+ L ++
Sbjct: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDST--DALPPIEQQFYETS-SKGKIPLLQRL 235
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L SL + + +VFCNT +AV LNE S ++ HG++ ++R + L +F N G
Sbjct: 236 L--SLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFAN--GS 291
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGLD+ ++ V+ F+ + ++HR GRTAR G G S A ++
Sbjct: 292 ARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ 351
Query: 310 LADRIEEAIR 319
A+ I + ++
Sbjct: 352 RANIISDMLQ 361
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 98/308 (31%), Positives = 151/308 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PTREL+ QV A+ ++ H ++GG + + D+VV T GR
Sbjct: 77 PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGR 136
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+LQ+I++ N ++ L+LDEAD M D GF DI + + R K QT+L S
Sbjct: 137 LLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEH--IAGETRWRK------QTLLFS 188
Query: 138 ATMT-KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
AT+ A+Q + + + + ++ + + E+K L+ +L+
Sbjct: 189 ATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQP-- 246
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ + +VF + ++L E I+ GE+ +R E + + +G LV
Sbjct: 247 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT--EGRVNVLVA 304
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR-- 313
TD+AARG+D+ DV HV FD P + YLHR GRTAR G KG SLV D LL +
Sbjct: 305 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 364
Query: 314 --IEEAIR 319
IEE I+
Sbjct: 365 RYIEEPIK 372
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 342 (125.4 bits), Expect = 7.7e-31, P = 7.7e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 342 (125.4 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 342 (125.4 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 342 (125.4 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 342 (125.4 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 342 (125.4 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 342 (125.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 92/303 (30%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL+ QV I H R R + GG + Q +L ++VGTPGRI
Sbjct: 72 QGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++ +VLDEAD M + GF DI L + P + QT+L SA
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV------P--ETHQTLLFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM ++++ + H++ + + + ++++ + K + L ++L+ +
Sbjct: 184 TMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD--IQSP 240
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T + LN + HG++ +R+ L KFK +G LV TD
Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFK--EGSIEVLVATD 298
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ V HV FD P + Y+HR GRT R G KG V ++ IE
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 318 IRK 320
++
Sbjct: 359 TKR 361
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 348 (127.6 bits), Expect = 9.1e-31, P = 9.1e-31
Identities = 99/303 (32%), Positives = 151/303 (49%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL QV++V K + + GG ++ QE L D+V+ TPGR+
Sbjct: 231 RVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRL 290
Query: 79 LQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ HI++ + I+ L+LDEAD M D F +++ + N K QT+L S
Sbjct: 291 IDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEII----NSCCKTR----QTMLFS 342
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEALLQVLEPSLS 196
ATM++ V+ L + + + + R +FI++ E E +L L +
Sbjct: 343 ATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI-CRT 401
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ MVF T + + L + HG + Q+R+E+L KFK E D L+
Sbjct: 402 FHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQID--VLIA 459
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRI 314
TD+AARGLD+ V VI F P+ + Y+HR GRTAR G G SL +K+ ++ D I
Sbjct: 460 TDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDII 519
Query: 315 EEA 317
+ A
Sbjct: 520 KNA 522
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 345 (126.5 bits), Expect = 9.8e-31, P = 9.8e-31
Identities = 95/306 (31%), Positives = 152/306 (49%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM-VSGGGRLRPQEDSLNNPIDMVVGT 74
+ P+ +VL PTREL+ QV S H R + + + GG R Q +L +VVGT
Sbjct: 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L H++ G + + LVLDEAD M GF D+ + + P +G QT
Sbjct: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI------P--EGHQTA 184
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SATM +A++++ + +R + + + G K EAL++ LE
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEAE 243
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ ++F T N++ V L N ++ +G++ R + L + K DG L
Sbjct: 244 --DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK--DGRLDIL 299
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
+ TD+AARGLD++ + V+ +D P++S Y+HR GRT R G G+ V ++ L
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 314 IEEAIR 319
IE ++
Sbjct: 360 IERTMK 365
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 100/322 (31%), Positives = 170/322 (52%)
Query: 7 AMLGVL-MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSL 64
A+L L +K R +++V+CPTREL++QV + + ++ + + GG PQ SL
Sbjct: 67 ALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSL 126
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+ ++VGTPGR+ +H+ G + ++ LVLDEAD M + GF + L + R
Sbjct: 127 EHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGF----QAALDNIVGRT- 181
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKL 184
P + QT+L SAT ++ + + ++ ++ + ++ F K+ +++L
Sbjct: 182 -PLDR--QTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQ-STISQKFFKVGNDDDRL 237
Query: 185 EALLQVLEPSLSKGNKV---MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+AL +L GN+V +FCNT ++ V L+ + S + HG++ ++R + L
Sbjct: 238 DALRLLL-----LGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTL 292
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+F N+ LV TD+AARGLD+D +D VI + +S ++HR GRT R G+ G
Sbjct: 293 LRFANKSASI--LVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAY 350
Query: 301 SLVAKKDV----LLADRIEEAI 318
SL + K+ LL D +E I
Sbjct: 351 SLFSDKESYKVGLLEDYLEAVI 372
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 100/322 (31%), Positives = 170/322 (52%)
Query: 7 AMLGVL-MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSL 64
A+L L +K R +++V+CPTREL++QV + + ++ + + GG PQ SL
Sbjct: 67 ALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSL 126
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+ ++VGTPGR+ +H+ G + ++ LVLDEAD M + GF + L + R
Sbjct: 127 EHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGF----QAALDNIVGRT- 181
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKL 184
P + QT+L SAT ++ + + ++ ++ + ++ F K+ +++L
Sbjct: 182 -PLDR--QTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQ-STISQKFFKVGNDDDRL 237
Query: 185 EALLQVLEPSLSKGNKV---MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+AL +L GN+V +FCNT ++ V L+ + S + HG++ ++R + L
Sbjct: 238 DALRLLL-----LGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTL 292
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+F N+ LV TD+AARGLD+D +D VI + +S ++HR GRT R G+ G
Sbjct: 293 LRFANKSASI--LVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAY 350
Query: 301 SLVAKKDV----LLADRIEEAI 318
SL + K+ LL D +E I
Sbjct: 351 SLFSDKESYKVGLLEDYLEAVI 372
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 348 (127.6 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 89/291 (30%), Positives = 145/291 (49%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q + K + ++ ++ GG R+ Q +L+ D+++ TPGR+
Sbjct: 168 RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRL 227
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ + ++ ++Y+V DEAD +F+ GF +++ + L P G QTVL SA
Sbjct: 228 VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARL------PGGH--QTVLFSA 279
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ K + + +R K + F L + K LL +L +
Sbjct: 280 TLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFF-LVREDTKAAVLLHLLHNVVRPQ 338
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++ +VF T + + + L ++S + + + R NL KF G C TL+ TD
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTL--GKCSTLIVTD 396
Query: 259 LAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LAARGLD+ + D+VI + FP +LHR GR AR G G SLVA ++
Sbjct: 397 LAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEI 447
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 339 (124.4 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 100/303 (33%), Positives = 152/303 (50%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
AV+L PTREL+ Q+ +I ++V GG Q L+ ++V TPGR+
Sbjct: 75 AVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLA 134
Query: 80 QHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
H+ +G + K+LVLDEAD + F +I L L P + QT+L SA
Sbjct: 135 SHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHL------PPPEKRQTLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TMTK + KL ++ + + + + ++I + + K L+ +L+ +G
Sbjct: 189 TMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMP-APTKDCYLVYILKKH--EG 245
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF N + AV LN+ I +V+ H + + R+ L FK+ G LV TD
Sbjct: 246 SSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKS--GKVKVLVATD 303
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+A+RGLD+ DV VI + +S DY+HR GRTAR G G+ S + DV L IEE
Sbjct: 304 VASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEI 363
Query: 318 IRK 320
I+K
Sbjct: 364 IKK 366
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 346 (126.9 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 93/283 (32%), Positives = 154/283 (54%)
Query: 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ 80
++L PTREL QV KS + +S V GG Q ++L D++V TPGR+L
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLD 490
Query: 81 HIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVSAT 139
+E+GN+ Y+V+DEAD + D GF +RK + + KN+ Q + ++AT
Sbjct: 491 FLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNK---------QLLFLTAT 541
Query: 140 MTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPSLSK 197
+ V+KL + C ++ ++ + ++ + +S S + + LL L+ + +
Sbjct: 542 WPEQVRKLAYDFCS-YDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENY-E 599
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
NK+++FC+T + + L +Q + ++ HG+ +ER LN +K + C LV T
Sbjct: 600 NNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDR--CNILVAT 657
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSI-DYLHRTGRTARMGAKGK 298
D+A+RGLD+ ++ VI +D P N+I DY+HR GRT R G KGK
Sbjct: 658 DVASRGLDIKNISVVINYDIP-NTIEDYIHRIGRTGRAGKKGK 699
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 341 (125.1 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 100/316 (31%), Positives = 157/316 (49%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+ + L PTREL+ Q+ +I ++ ++ GG Q +L +
Sbjct: 181 LLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHV 240
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
VVG+PGR+L H+E IKY ++DEAD +F F ++ L +P K R
Sbjct: 241 VVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIP-KER----- 294
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA--RHDFIKLSGSENKLE 185
T L SATMT V KL ++ ++ ++ + + ++ F+ + L
Sbjct: 295 ----NTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLA 350
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
+L L GN ++F +T SS + L + +G++ +R+ +LNKFK
Sbjct: 351 YILNELA-----GNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFK 405
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
G LV TD+AARGLD+ VD VI +D P NS +Y+HR GRTAR G G+ ++V
Sbjct: 406 Q--GTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVT 463
Query: 305 KKDVLLADRIEEAIRK 320
+ DV + RIE ++K
Sbjct: 464 QYDVEMYQRIEFVLKK 479
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 97/315 (30%), Positives = 152/315 (48%)
Query: 13 MKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+ P P +A+V+ PTREL+ QV I R R + GG + Q +L +
Sbjct: 65 INPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHI 124
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNG 128
+VGTPGR+L HI M + +VLDEAD M + GF DI L VP ++
Sbjct: 125 IVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH------- 177
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
QT+L SATM ++++ + H++ +++ + ++++ K + L
Sbjct: 178 ---QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVH-ERKKFDTLT 233
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
++L+ + +VF T + LN + HG++ +R+ L KFK
Sbjct: 234 RLLD--IQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQ-- 289
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA--K 305
G LV TD+AARGLD+ V HV FD P + Y+HR GRT R G G + + +
Sbjct: 290 GAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPRE 349
Query: 306 KDVLLADRIEEAIRK 320
KD+L A IE+ ++
Sbjct: 350 KDMLRA--IEQTTKR 362
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 94/322 (29%), Positives = 150/322 (46%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+ + G + RA++L PTREL+ Q+ + + S +V GG ++ PQ
Sbjct: 64 LLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQ 123
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L +D++V TPGR+L + + ++ +LDEAD M D GF DI+K + L
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTAL- 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
P + Q +L SAT + ++ L + A ++
Sbjct: 183 -----PKDR--QNLLFSATFSPEIRALAKGMVNNPLEISVDA-ENSTAEKVTQWLTAVDK 234
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+ K L +++ + +V+VF T + + + L ++ HG R +
Sbjct: 235 KRKPAVLTHLIKEN--NWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKA 292
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L FK DG LV TD+AARG+D+D+ V+ FD P DY+HR GRTAR G G+
Sbjct: 293 LAAFK--DGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQA 350
Query: 300 TSLVAKKDVLLADRIEEAIRKN 321
SLV ++ L IE I+++
Sbjct: 351 LSLVCADELDLLWGIEHVIQQH 372
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 339 (124.4 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 106/317 (33%), Positives = 159/317 (50%)
Query: 18 PRAVVLCPTRELSEQV---------FRVAKSISHHA---RFRSTMVS--GGGRLRPQEDS 63
PRA+V+ PTREL QV + A + A R R ++VS GG PQ ++
Sbjct: 85 PRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEA 144
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L D+VVGTPGR+L + G++ G + LVLDEAD M D GF PDI + L + A
Sbjct: 145 LRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP--A 202
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK-IASARHDFIKLSGSEN 182
+ Q++L SATM + L H+R H + A F+ + + +
Sbjct: 203 DR------QSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALD 256
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K+E + +VL+ + +G M+F T +++ V L E + HG++ R + L
Sbjct: 257 KVELVSRVLQ-ARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALK 314
Query: 243 KFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
F+ G LV TD+AARG+D+D V HVI + P + Y+HR GRT R G G +
Sbjct: 315 AFRT--GGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVT 372
Query: 302 LVAKKDVLLADRIEEAI 318
LV ++ I++A+
Sbjct: 373 LVDWDELPRWSMIDQAL 389
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 93/304 (30%), Positives = 153/304 (50%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV + + R + GG + Q+ N ID+++ TPGR+
Sbjct: 77 RALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ G + + LV DEAD M D GF +I+ L + A + QT+L SA
Sbjct: 137 LDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP--AQR------QTLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ ++ + + + + A + S+ K E + ++ SK
Sbjct: 189 TLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAID-SDRKTEFVSHLVR---SKN 244
Query: 199 -NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V++F T + LN+ ++T ++HG++ R + L +FK G LV T
Sbjct: 245 WQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQ--GLVQVLVAT 302
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+ ++ +VI F+ P + DY+HR GRT R G+ G +L +++D LL + +E
Sbjct: 303 DVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVET 362
Query: 317 AIRK 320
+ K
Sbjct: 363 LLDK 366
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 96/305 (31%), Positives = 153/305 (50%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM----VSGGGRLRPQEDSLNNPIDMVV 72
R +A+VLCPTREL++QV K + ARF + + GG PQ SL + +V+
Sbjct: 72 RVQALVLCPTRELADQV---GKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAHVVI 128
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGR+L H+ G++ ++ LVLDEAD M D GF DI + A+ P Q
Sbjct: 129 GTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIA-----AAPPKRQ--- 180
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT ++ + + + +H + + F ++ + ++EA+ ++L
Sbjct: 181 TLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGE-GAIEQVFYEVDSGQ-RIEAVERIL- 237
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ ++FCNT + V + L + + HG++ +ER L +F N
Sbjct: 238 -GHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSAS-- 294
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ ++ VI ++ N + HR GRT R G +G SLV ++ L
Sbjct: 295 VLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLI 354
Query: 312 DRIEE 316
I +
Sbjct: 355 AAIAD 359
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 93/304 (30%), Positives = 153/304 (50%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV + + R + GG + Q+ N ID+++ TPGR+
Sbjct: 77 RALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ G + + LV DEAD M D GF +I+ L + A + QT+L SA
Sbjct: 137 LDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP--AQR------QTLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ ++ + + + + A + S+ K E + ++ SK
Sbjct: 189 TLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAID-SDRKTEFVSHLVR---SKN 244
Query: 199 -NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V++F T + LN+ ++T ++HG++ R + L +FK G LV T
Sbjct: 245 WQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQ--GLVQVLVAT 302
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+ ++ +VI F+ P + DY+HR GRT R G+ G +L +++D LL + +E
Sbjct: 303 DVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVET 362
Query: 317 AIRK 320
+ K
Sbjct: 363 LLDK 366
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 344 (126.2 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 95/296 (32%), Positives = 146/296 (49%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P +VL PTREL+ Q+ S+ F+S + GGG Q + + +D+V+
Sbjct: 349 KRNGPGMLVLTPTRELALQIEAECNKYSYKG-FKSICIYGGGDRNAQIKVVTSGVDIVIA 407
Query: 74 TPGRILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR L ++ ++ I YLVLDEAD M D GF P I K ++ ++ P+ Q
Sbjct: 408 TPGR-LNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIR-----PDRQ--- 458
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
TV+ SAT V++L + + TL + + + K + + +
Sbjct: 459 TVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIH 518
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ +KV++F + + L I+ + HG+ +R E L FK DG
Sbjct: 519 -RMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFK--DGRVR 575
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TDLA+RGLD+ D+ HV +DFP N +Y+HR GRT R G G+ +LV ++D
Sbjct: 576 ILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTRED 631
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 337 (123.7 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 92/316 (29%), Positives = 160/316 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP P +VL PTREL++Q+ K S++ ++S + GGG Q ++ +++V+
Sbjct: 161 KPS-PFVLVLSPTRELAQQIEGEVKKYSYNG-YKSVCLYGGGSRPEQVEACRGGVEIVIA 218
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+ DG + + Y+VLDEAD M D GF IR+ L ++ P+
Sbjct: 219 TPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIR-----PDRL---V 270
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV--- 190
L SAT + V+KL D+ + +L + F + +++ + ++
Sbjct: 271 ALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNF 330
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKNE 247
L + + K+++F + S DH ++ + +N HG +R +LN ++
Sbjct: 331 LTAAHGQNYKMIIF---VKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRS- 386
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G+ LV TDLA+RG+D+ D+ HV+ +DFP++ +Y+HR GRT R G KG+ S +
Sbjct: 387 -GEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWN 445
Query: 307 DVLLADRIEEAIRKNE 322
D + + + + K+E
Sbjct: 446 DRSNFEGLIQILEKSE 461
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 336 (123.3 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 89/311 (28%), Positives = 152/311 (48%)
Query: 13 MKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+ P P +A+V+ PTREL+ QV I R + + GG + Q +L ++
Sbjct: 65 INPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNI 124
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+VGTPGR+L HI + ++ +V+DEAD M + GF DI L ++ P+
Sbjct: 125 IVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESIL------SNVPSEH- 177
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+L SATM ++++ + H++ +++ + ++++ K + L ++
Sbjct: 178 -QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQ-ERKKFDTLTRL 235
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L+ + +VF T + LN + HG++ +R+ L KFK +G
Sbjct: 236 LD--IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFK--EGA 291
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGLD+ V HV FD P + Y+HR GRT R G G + + ++
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS 351
Query: 310 LADRIEEAIRK 320
+ IE+ ++
Sbjct: 352 MLRAIEQTTKR 362
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 342 (125.4 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 98/319 (30%), Positives = 163/319 (51%)
Query: 6 EAMLGVLMKPRRPRAV-VLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDS 63
E + V PR V V+CPTREL+ Q + VAK + +H++ ++ GG + + + +
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVI-GGEKRKTEAEI 272
Query: 64 LNNPIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNR 122
L ++++V TPGR+L H+E+ N ++ ++K+LV+DEAD + ++ F D++K L N
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKIL----NL 328
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-ARHDFIKLSGSE 181
K QT L SAT + V+ L ++ K++ + + S
Sbjct: 329 LPKTR----QTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSA 384
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+L LL L+ K K+MVF +T S++ + + G + +R
Sbjct: 385 MRLLFLLTFLKRFQGK-KKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTF 443
Query: 242 NKF-KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTAR-MGAKGK 298
+F K E G L+CT++AARGLD VD ++ +D P N DY+HR GRTAR GAKGK
Sbjct: 444 LQFIKAETG---ILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGK 500
Query: 299 VTSLVAKKDVLLADRIEEA 317
++ +++ ++ A
Sbjct: 501 ALLVLTPQELKFIQYLKAA 519
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 93/308 (30%), Positives = 156/308 (50%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K +PRA+++ PTREL+ Q+ A+ ++ + + GG Q L + +D+++G
Sbjct: 81 KVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIG 140
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
T GR++ + + ++ G I+ +VLDEAD M+D GF DIR R P Q
Sbjct: 141 TTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLF-----RRMPPANQRLN- 194
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ V++L E+ ++ K + + S +E K+ L ++E
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPS-NEEKMRLLQTLIEE 253
Query: 194 SLSKGNKVMVFCNTLNSSRAV-DHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
++ ++F NT + + H + +++ + G+V ++R+ L++F GD
Sbjct: 254 EWP--DRAIIFANTKHRCEEIWGHLAADGHRVGLLT--GDVAQKKRLRILDEFTR--GDL 307
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGL + V HV +D P + DY+HR GRT R GA G SL ++ L
Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALN 367
Query: 311 ADRIEEAI 318
IE I
Sbjct: 368 LPAIETYI 375
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 96/315 (30%), Positives = 156/315 (49%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G ++ + RA++L PTREL+ Q+ H +S +V GG ++ PQ + D
Sbjct: 66 GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR++ + + ++ LVLDEAD M D GF DI K L L +
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR------ 179
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
Q +L SAT + +++L + S + A I + + K + L++
Sbjct: 180 --QNLLFSATFSTEIRELAKGLVNNPVEISVSPANST-ARTVEQCIYPADVKKKPDMLVK 236
Query: 190 VLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+++ +GN +V+VF T + + + +LNE ++ HG R L FK
Sbjct: 237 LVK----EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKA- 291
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G+ LV TD+AARG+D+ + V+ F+ P + DY+HR GRT R G GK SLV+
Sbjct: 292 -GEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAI 350
Query: 307 DV--LLA-DRIEEAI 318
+ L A +R+ +A+
Sbjct: 351 EAPELFAIERLTQAL 365
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 96/315 (30%), Positives = 156/315 (49%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G ++ + RA++L PTREL+ Q+ H +S +V GG ++ PQ + D
Sbjct: 66 GPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR++ + + ++ LVLDEAD M D GF DI K L L +
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR------ 179
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
Q +L SAT + +++L + S + A I + + K + L++
Sbjct: 180 --QNLLFSATFSTEIRELAKGLVNNPVEISVSPANST-ARTVEQCIYPADVKKKPDMLVK 236
Query: 190 VLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+++ +GN +V+VF T + + + +LNE ++ HG R L FK
Sbjct: 237 LVK----EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKA- 291
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G+ LV TD+AARG+D+ + V+ F+ P + DY+HR GRT R G GK SLV+
Sbjct: 292 -GEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAI 350
Query: 307 DV--LLA-DRIEEAI 318
+ L A +R+ +A+
Sbjct: 351 EAPELFAIERLTQAL 365
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 94/301 (31%), Positives = 148/301 (49%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL++QV ++ + + V GG ++ Q + L +D+++ TPGR+
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRL 142
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H ++ G ++ LVLDEAD M D GF PD+++ L R P Q T+ SA
Sbjct: 143 LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL-----RRLSPLRQ---TLFFSA 194
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T ++ + + ++ T A + + K E LL L S
Sbjct: 195 TFDSKIKAVAYRIMRDPIEVQV-TPSNSTAETVQQMVYPVDKKRKRE-LLSYLIGS-KNW 251
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T S A+ L + I V+ +G+ R + L+ FK G L+ TD
Sbjct: 252 QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA--GKVRALIATD 309
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ +D P + DY+HR GRT R G G SL++ + + IE
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERL 369
Query: 318 I 318
+
Sbjct: 370 L 370
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 94/301 (31%), Positives = 148/301 (49%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL++QV ++ + + V GG ++ Q + L +D+++ TPGR+
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRL 142
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H ++ G ++ LVLDEAD M D GF PD+++ L R P Q T+ SA
Sbjct: 143 LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL-----RRLSPLRQ---TLFFSA 194
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T ++ + + ++ T A + + K E LL L S
Sbjct: 195 TFDSKIKAVAYRIMRDPIEVQV-TPSNSTAETVQQMVYPVDKKRKRE-LLSYLIGS-KNW 251
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T S A+ L + I V+ +G+ R + L+ FK G L+ TD
Sbjct: 252 QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA--GKVRALIATD 309
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ +D P + DY+HR GRT R G G SL++ + + IE
Sbjct: 310 VAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERL 369
Query: 318 I 318
+
Sbjct: 370 L 370
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 90/298 (30%), Positives = 140/298 (46%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A+V+ PTREL++Q+ +V ++ + GG +R + L I +VVGTPGR+
Sbjct: 99 QALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRV 158
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
I + IK VLDEAD M RGF I + S P Q Q VL+SA
Sbjct: 159 GDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVF------RSMP--QDVQVVLLSA 210
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM V + + + + + R +I + E K + L + ++
Sbjct: 211 TMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLY--NVVNV 268
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ ++FCNT + + ENQ + HG++ ER + +F++ G L+ TD
Sbjct: 269 TQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRS--GSSRVLITTD 326
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
+ ARG+D+ V VI +D P N +Y+HR GR+ R G KG + V + D IE
Sbjct: 327 ILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIE 384
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 343 (125.8 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 99/316 (31%), Positives = 162/316 (51%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ P R +VL PTREL QV V K ++ + + GG ++ QE +L
Sbjct: 249 LIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 308
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + I+ L+LDEAD M D F +++ + +
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR--- 365
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT V+ L + + ++ R +F+++ + E E
Sbjct: 366 -----QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDRE 420
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + + + VM+F T + + L + HG + +R+E L +FK
Sbjct: 421 AIVAALL-TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 479
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLV 303
+E D LV TD+AARGLD++ V VI F P N+I Y+HR GRTAR G G+ SLV
Sbjct: 480 DEQIDI--LVATDVAARGLDIEGVKTVINFTMP-NTIKHYVHRVGRTARAGRAGRSVSLV 536
Query: 304 AKKDVLLADRIEEAIR 319
+++ + I +A +
Sbjct: 537 GEEERKMLKEIVKAAK 552
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 342 (125.4 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 93/304 (30%), Positives = 150/304 (49%)
Query: 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ 80
+VL PTREL+ Q+ K S ++ V GGG Q L ++++ TPGR+
Sbjct: 361 LVLAPTRELALQIEMEVKKYSFRG-MKAVCVYGGGNRNMQISDLERGAEIIICTPGRLND 419
Query: 81 HIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140
I + I YLVLDEAD M D GF P IRK ++ ++ P+ Q T++ SAT
Sbjct: 420 LIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIR-----PDRQ---TIMTSATW 471
Query: 141 TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE-NKLEALLQVLEPSLSKGN 199
V++L + + +L + IKL + +K + ++ ++S +
Sbjct: 472 PPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVK-NMSSTD 530
Query: 200 KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259
K+++FC + + L + T HG +R + + K+ G LV TD+
Sbjct: 531 KIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKS--GVVRILVATDV 588
Query: 260 AARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAI 318
A+RGLD+ D+ HVI +DFP N +Y+HR GRT R G +G S ++D +A + E +
Sbjct: 589 ASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEIL 648
Query: 319 RKNE 322
++ E
Sbjct: 649 QEAE 652
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 344 (126.2 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 89/291 (30%), Positives = 146/291 (50%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q + K + ++ ++ GG ++ Q +L+ D+++ TPGR+
Sbjct: 167 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ + N+ ++Y+V DEAD +F+ GF +++ + L P G QTVL SA
Sbjct: 227 VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRL------PGGH--QTVLFSA 278
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ K + + +R K + F+ L + K LL +L+ +
Sbjct: 279 TLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFL-LVREDTKAAVLLYLLQNVVRPQ 337
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++ +VF T + + + L +S + + + R NL KF + C TL+ TD
Sbjct: 338 DQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNK--CSTLIVTD 395
Query: 259 LAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LAARGLD+ + D+VI + FP +LHR GR AR G G SLVA +V
Sbjct: 396 LAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 343 (125.8 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 99/316 (31%), Positives = 162/316 (51%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ P R +VL PTREL QV V K ++ + + GG ++ QE +L
Sbjct: 270 LIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 329
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + I+ L+LDEAD M D F +++ + +
Sbjct: 330 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR--- 386
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT V+ L + + ++ R +F+++ + E E
Sbjct: 387 -----QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDRE 441
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + + + VM+F T + + L + HG + +R+E L +FK
Sbjct: 442 AIVAALL-TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 500
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLV 303
+E D LV TD+AARGLD++ V VI F P N+I Y+HR GRTAR G G+ SLV
Sbjct: 501 DEQIDI--LVATDVAARGLDIEGVKTVINFTMP-NTIKHYVHRVGRTARAGRAGRSVSLV 557
Query: 304 AKKDVLLADRIEEAIR 319
+++ + I +A +
Sbjct: 558 GEEERKMLKEIVKAAK 573
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 342 (125.4 bits), Expect = 4.5e-30, P = 4.5e-30
Identities = 89/295 (30%), Positives = 146/295 (49%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P RA++L PTREL+ Q + K + ++ +V GG ++ Q +L+ D+++ T
Sbjct: 103 PSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIAT 162
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ + N+ ++Y+V DEAD +F+ GF +++ L L P QTV
Sbjct: 163 PGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARL------PGSH--QTV 214
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT+ K + + +R K + F + G ++K LL +L
Sbjct: 215 LFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRG-DDKPAVLLHLLRCV 273
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ ++ +VF T + + + L I + + + R N+ KF + G C L
Sbjct: 274 VKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAH--GKCQVL 331
Query: 255 VCTDLAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ TD+AARGLD+ + D+VI + FP S +LHR GR AR G G SLVA ++
Sbjct: 332 LVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEM 386
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 341 (125.1 bits), Expect = 4.8e-30, P = 4.8e-30
Identities = 97/300 (32%), Positives = 150/300 (50%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R P+ +VL PTREL+ QV + K I+ + T GG PQ D++ + ID++VGTP
Sbjct: 239 RPPKVLVLAPTRELAIQVTKDFKDITR--KLSVTCFYGGSSYNPQIDAIRSGIDVLVGTP 296
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL--KNRASKPNGQGFQT 133
GRI H+++ + ++++VLDE D M D GF + + L K+ KP QT
Sbjct: 297 GRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQKP-----QT 351
Query: 134 VLVSATMTKAVQKLVDEECQG-IAH--LRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SAT V + + + H L K + H I S+ + + V
Sbjct: 352 LLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQ-RASVIGDV 410
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDG 249
++ + +VFC T A + LN + + S + HG++P ++R L F+N G
Sbjct: 411 IQVYSGSHGRTIVFCET--KKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRN--G 466
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLVAKKD 307
LV T++AARGLD+ +VD VI P N ++ Y+HR+GRT R G G +K+
Sbjct: 467 SFEVLVATNVAARGLDIPEVDLVIQSS-PPNDVESYIHRSGRTGRAGRTGICICFYQRKE 525
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 341 (125.1 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 100/316 (31%), Positives = 160/316 (50%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ P R +VL PTREL QV V K ++ + + GG ++ QE +L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 308
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + I+ L+LDEAD M D F +++ + +
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR--- 365
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT V+ L + + ++ R +FI++ + E E
Sbjct: 366 -----QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 420
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + VM+F T + + L + HG + +R+E L +FK
Sbjct: 421 AIVAALLMRTFTDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 479
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLV 303
+E D LV TD+AARGLD++ V VI F P N+I Y+HR GRTAR G G+ SLV
Sbjct: 480 DEQIDI--LVATDVAARGLDIEGVKTVINFTMP-NTIKHYVHRVGRTARAGRAGRSVSLV 536
Query: 304 AKKDVLLADRIEEAIR 319
+++ + I +A +
Sbjct: 537 GEEERKMLKEIVKAAK 552
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 333 (122.3 bits), Expect = 6.1e-30, P = 6.1e-30
Identities = 94/303 (31%), Positives = 146/303 (48%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+AV++ PTREL+ Q +V K + H + + + +GG L+ L P+ ++VGTPGRI
Sbjct: 201 QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI 260
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + G V D LV+DEAD + + F P + + L P + Q ++ SA
Sbjct: 261 LDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFL------PESR--QILMFSA 312
Query: 139 TMTKAVQKLVDEECQG--IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
T V+ D + +L K I + F++ + L L L+
Sbjct: 313 TFPVTVKDFKDRFLTNPYVINLMDELTLKGITQF-YAFVEERQKIHCLNTLFSKLQI--- 368
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
N+ ++FCN++N + + E S H ++ R + F+N G C LVC
Sbjct: 369 --NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN--GACRNLVC 424
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TDL RG+D+ V+ VI FDFP N+ YLHR GR+ R G G +L+ +D RIE
Sbjct: 425 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 484
Query: 316 EAI 318
+ +
Sbjct: 485 QEL 487
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 89/305 (29%), Positives = 151/305 (49%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R +A++L PTREL+ Q+ V ++ H + GG + L+ +V GTP
Sbjct: 88 RDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTP 147
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGP---DIRKFLVPLKNRASKPNGQGFQ 132
GR+ I N+ ++K L+LDEAD + ++GF DI ++L P G Q
Sbjct: 148 GRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPP-----------GTQ 196
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
V+VSAT+ + V ++ ++ + + + FI + E K + L + +
Sbjct: 197 VVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYD 256
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+L+ + ++FCN+ + + E + + HGE+P +ER + F+ G+
Sbjct: 257 -TLTI-TQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQ--GNSR 312
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+CTD+ ARG+D+ V VI +D P N +Y+HR GR+ R G KG + V +DV +
Sbjct: 313 VLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRIL 372
Query: 312 DRIEE 316
IE+
Sbjct: 373 RDIEQ 377
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 341 (125.1 bits), Expect = 7.2e-30, P = 7.2e-30
Identities = 89/291 (30%), Positives = 145/291 (49%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q + K + ++ ++ GG ++ Q +L+ D+++ TPGR+
Sbjct: 167 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ + N+ ++Y+V DEAD +F+ GF +++ + L P G QTVL SA
Sbjct: 227 VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRL------PGGH--QTVLFSA 278
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ K + + +R K + F L + K LL +L+ +
Sbjct: 279 TLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFF-LVREDTKTAVLLYLLQNVVRPQ 337
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++ +VF T + + + L +S + + + R NL KF + C TL+ TD
Sbjct: 338 DQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNK--CSTLIVTD 395
Query: 259 LAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LAARGLD+ + D+VI + FP +LHR GR AR G G SLVA +V
Sbjct: 396 LAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 336 (123.3 bits), Expect = 8.3e-30, P = 8.3e-30
Identities = 100/313 (31%), Positives = 157/313 (50%)
Query: 11 VLMKPRR-PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
V K R P +VL PTREL+ QV + +S + GGG + Q + +D
Sbjct: 268 VSRKQRNGPGMLVLTPTRELALQVEAECSKYLYKG-LKSVCIYGGGNRKGQIQDVTKGVD 326
Query: 70 MVVGTPGRILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128
+++ TPGR L ++ N V I YLVLDEAD M D GF I K L+ ++ P+
Sbjct: 327 IIIATPGR-LNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVR-----PDR 380
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q TV+ +A+ + ++L + + TL + I ++ E K +
Sbjct: 381 Q---TVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVK 437
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+ L+ SLS +KV+VF + + + L+ I + HG+ +R + L F+
Sbjct: 438 EFLQ-SLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRT-- 494
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G L+ TDLAARGLD+ DV HV ++FP N +Y+HR GRT R G G+ +LV + D
Sbjct: 495 GRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDD 554
Query: 308 VLLADRIEEAIRK 320
+AD + + +++
Sbjct: 555 WKIADELIKILQR 567
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 339 (124.4 bits), Expect = 8.9e-30, P = 8.9e-30
Identities = 99/316 (31%), Positives = 161/316 (50%)
Query: 11 VLMKPRR-P--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ P R +VL PTREL QV V + ++ + + GG ++ QE +L
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 339
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + I+ L+LDEAD M D F +++ + +
Sbjct: 340 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR--- 396
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT V+ L + + ++ R +FI++ + E E
Sbjct: 397 -----QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 451
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + + + VM+F T + + L + HG + +R+E L +FK
Sbjct: 452 AIVAALL-TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 510
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSLV 303
+E D LV TD+AARGLD++ V VI F P N+I Y+HR GRTAR G G+ SLV
Sbjct: 511 DEQIDI--LVATDVAARGLDIEGVKTVINFTMP-NTIKHYVHRVGRTARAGRAGRSVSLV 567
Query: 304 AKKDVLLADRIEEAIR 319
+ + + I +A +
Sbjct: 568 GEDERKMLKEIVKAAK 583
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 338 (124.0 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 107/310 (34%), Positives = 152/310 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTRELS+QV K IS F + GG QE+ L ID++ GTPGR
Sbjct: 258 PSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
I+ HIE N+ +IKY+VLDEAD M + GF DI + L S N + Q +L S
Sbjct: 318 IIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERIL-------SNINLKEAQVLLYS 370
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-SARHDFIKLSGSENKLEALLQVLEPSLS 196
AT ++ + + + + K A + +H IK + LL+ + S
Sbjct: 371 ATTPSWIKDISSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLLEDIILVKS 430
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNY---HGEVPAQERVENLNKFKNEDGDCPT 253
G +V++F T D +E ++++ HG + R + +F+ G
Sbjct: 431 NGGQVIIFTRT---KLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQ--GMFQI 485
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLN-SIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+ TD+A+RGLD+ +VD VI FP N S Y+HR GRT R KG TSLV +
Sbjct: 486 LIATDIASRGLDISNVDLVIQC-FPPNYSAVYIHRAGRTGRANKKG--TSLVLYSNEDKQ 542
Query: 312 DRIEEAIRKN 321
D I+ I KN
Sbjct: 543 DLIK--IEKN 550
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 338 (124.0 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 107/310 (34%), Positives = 152/310 (49%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTRELS+QV K IS F + GG QE+ L ID++ GTPGR
Sbjct: 258 PSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
I+ HIE N+ +IKY+VLDEAD M + GF DI + L S N + Q +L S
Sbjct: 318 IIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERIL-------SNINLKEAQVLLYS 370
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-SARHDFIKLSGSENKLEALLQVLEPSLS 196
AT ++ + + + + K A + +H IK + LL+ + S
Sbjct: 371 ATTPSWIKDISSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLLEDIILVKS 430
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNY---HGEVPAQERVENLNKFKNEDGDCPT 253
G +V++F T D +E ++++ HG + R + +F+ G
Sbjct: 431 NGGQVIIFTRT---KLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQ--GMFQI 485
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLN-SIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+ TD+A+RGLD+ +VD VI FP N S Y+HR GRT R KG TSLV +
Sbjct: 486 LIATDIASRGLDISNVDLVIQC-FPPNYSAVYIHRAGRTGRANKKG--TSLVLYSNEDKQ 542
Query: 312 DRIEEAIRKN 321
D I+ I KN
Sbjct: 543 DLIK--IEKN 550
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 338 (124.0 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 97/315 (30%), Positives = 156/315 (49%)
Query: 11 VLMKPRRP---RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR+ R +VL PTREL QV V K ++ + + GG ++ QE +L
Sbjct: 246 LIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 305
Query: 68 IDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + I+ L+LDEAD M D F +++ + +
Sbjct: 306 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR--- 362
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
QT+L SATMT V+ L + + ++ R +FI++ + E E
Sbjct: 363 -----QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 417
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + VM+F T + + L + HG + +R+E L +FK
Sbjct: 418 AIVAALLMRTFTDH-VMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFK 476
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+E D LV TD+AARGLD++ V VI F P Y+HR GRTAR G G+ SLV
Sbjct: 477 DEQIDI--LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVG 534
Query: 305 KKDVLLADRIEEAIR 319
+++ + I +A +
Sbjct: 535 EEERKMLKEIVKAAK 549
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 88/291 (30%), Positives = 144/291 (49%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q + K + ++ ++ GG ++ Q +L+ D+++ TPGR+
Sbjct: 168 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 227
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ + N+ ++Y+V DEAD +F+ GF +++ + L P G QTVL SA
Sbjct: 228 VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRL------PGGH--QTVLFSA 279
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ K + + +R K + F L + K LL +L +
Sbjct: 280 TLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFF-LVREDAKAAVLLHLLRNVVRPQ 338
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++ +VF T + + + L +S + + + R NL +F + G C L+ TD
Sbjct: 339 DQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTH--GKCSALIVTD 396
Query: 259 LAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LAARGLD+ + D+VI + FP +LHR GR AR G G SLVA +V
Sbjct: 397 LAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 447
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 90/312 (28%), Positives = 155/312 (49%)
Query: 8 MLGVL-MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
ML V+ K + +A++L PTREL+ Q+ V K + + + GG + L
Sbjct: 84 MLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQ 143
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
+V GTPGR++ I+ N+ +IK L+LDEAD +F +GF I + L P
Sbjct: 144 GQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLP-----P 198
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
+ Q V+VSAT+ + V ++ + + ++ + +++ + K +
Sbjct: 199 S---VQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDT 255
Query: 187 LLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L + + +L+ + ++FCNT L + D +N + V HG++ ER +N F+
Sbjct: 256 LCDLYD-NLTI-TQAVIFCNTKLKVNWLADQMKKQN-FTVVAMHGDMKQDERDSIMNDFR 312
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
G+ L+ TD+ ARG+D+ V VI +D P + +Y+HR GR+ R G KG +L+
Sbjct: 313 R--GNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLIT 370
Query: 305 KKDVLLADRIEE 316
K DV+ E+
Sbjct: 371 KDDVVTLKEFEK 382
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 337 (123.7 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 96/314 (30%), Positives = 159/314 (50%)
Query: 11 VLMKPRRP---RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
++ KPR R +VL PTREL QV VA+ ++ + + GG L+ QE +L
Sbjct: 263 LIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAG 322
Query: 68 IDMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ TPGR++ H+ + + I+ L+LDEAD M D F +++ + +
Sbjct: 323 PDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQR--- 379
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS-GSENKLE 185
QT+L SATM++ V+ L + + ++ R +F+++ E E
Sbjct: 380 -----QTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDRE 434
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
A++ L + + VM+F T + + L + HG + +R+E+L +FK
Sbjct: 435 AIVAALLTRTFQDH-VMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFK 493
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+E D LV TD+AARGLD++ V VI F P Y+HR GRTAR G G+ SLV
Sbjct: 494 DEQIDI--LVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVG 551
Query: 305 KKD-VLLADRIEEA 317
+ + +L + +++A
Sbjct: 552 ETERKMLKEIVKKA 565
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 335 (123.0 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 93/305 (30%), Positives = 144/305 (47%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+V+ PTREL +Q+ + ++ + H FR + GG + Q ++ ++++ TPGR
Sbjct: 490 PYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGR 549
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VP---LKNR----ASKPNG 128
+ +E +V Y+VLDEAD M D GF P + L +P LK+ A K
Sbjct: 550 LNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQES 609
Query: 129 QGFQ----TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKL 184
T+L SATM V+KL + + + K + R I + +K
Sbjct: 610 DRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKK 669
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
E L Q+++ +++F N + L E ++S H ++R L F
Sbjct: 670 EHLTQLIKDGPPP--PIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGF 727
Query: 245 KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K + L+ T +A+RG+ +D V HVI FD P N DY HR GRT R G+ G +S +
Sbjct: 728 KKRKYE--VLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFI 785
Query: 304 AKKDV 308
KDV
Sbjct: 786 TDKDV 790
WARNING: HSPs involving 611 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 323 323 0.00086 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 861
No. of states in DFA: 587 (62 KB)
Total size of DFA: 196 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.57u 0.11s 26.68t Elapsed: 00:00:01
Total cpu time: 26.62u 0.11s 26.73t Elapsed: 00:00:01
Start: Sat May 11 10:23:54 2013 End: Sat May 11 10:23:55 2013
WARNINGS ISSUED: 2