BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047490
(323 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/323 (92%), Positives = 310/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+ GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ
Sbjct: 180 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 239
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN PIDMVVGTPGR+LQHIE+GNMVYG+IKYLVLDEADTMFDRGFGPDIRKFL PLK
Sbjct: 240 EDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLK 299
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASK + QGFQTVLV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 300 NRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 359
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVPA++RVEN
Sbjct: 360 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVEN 419
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK EDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 420 LKKFKTEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 479
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKD+LLA RIEEAIRKNES
Sbjct: 480 SLVAKKDLLLATRIEEAIRKNES 502
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/323 (92%), Positives = 310/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+ GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ
Sbjct: 50 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 109
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN PIDMVVGTPGR+LQHIE+GNMVYG+IKYLVLDEADTMFDRGFGPDIRKFL PLK
Sbjct: 110 EDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLK 169
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASK + QGFQTVLV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 170 NRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 229
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVPA++RVEN
Sbjct: 230 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVEN 289
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK EDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 290 LKKFKTEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 349
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKD+LLA RIEEAIRKNES
Sbjct: 350 SLVAKKDLLLATRIEEAIRKNES 372
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/323 (90%), Positives = 309/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+LG LMKPRRPRAVVLCPTRELSEQVFRVAKSI HHARFRSTMVSGGGR+RPQ
Sbjct: 177 LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRMRPQ 236
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNNPIDMVVGTPGR+LQHI+DGNMVYGDIKYLVLDEADTMFDRGFGPDI KFL PLK
Sbjct: 237 EDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLK 296
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NR SK +GQGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 297 NRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGS 356
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRA DHFL ENQISTVNYHGEVPA++RVEN
Sbjct: 357 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVEN 416
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKFK++DGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 417 LNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 476
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVA+KD LA RIEEA+RKNES
Sbjct: 477 SLVARKDQQLAARIEEAMRKNES 499
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/323 (87%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQV+RVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 155 LLRRDEAMLGISMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 214
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 215 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 274
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRTS+ K++++ARHDFIKLSG+
Sbjct: 275 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 334
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 335 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 394
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 395 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 454
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
S+VAKKDV LA RIEEA++KNES
Sbjct: 455 SIVAKKDVALATRIEEAMKKNES 477
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 287/323 (88%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG R+RPQ
Sbjct: 171 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQ 230
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 231 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 290
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRT+T K++A+ARHDFIKLSGS
Sbjct: 291 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGS 350
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 351 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 410
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 411 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 470
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKDV LA RIEEA++KNES
Sbjct: 471 SLVAKKDVTLATRIEEAMKKNES 493
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 283/323 (87%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQV+RVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 156 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 215
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 216 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 275
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP+ QGFQTVLV+ATMTKAVQKL+DEE +GI HLRTS+ K++++ARHDFIKLSG+
Sbjct: 276 NRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 335
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL EN ISTVNYHGEVPA+ERVEN
Sbjct: 336 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVEN 395
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 396 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 455
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
S+VAKKDV LA RIEEA++KNES
Sbjct: 456 SIVAKKDVALATRIEEAMKKNES 478
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/323 (89%), Positives = 304/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DE + G LMKPRRPRAVVLCPTRELSEQVFRV+KSISHHARFRSTMVSGGGRLRPQ
Sbjct: 181 LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSL+NPIDMVVGTPGR+LQHIE GNMVYGDIKYLVLDEADTMFD GFGPDIRKF+ PLK
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+RAS + QGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQ+RVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK++D DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV KKD +LA RIEEAIRKNES
Sbjct: 481 SLVGKKDNILATRIEEAIRKNES 503
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/323 (89%), Positives = 304/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DE + G LMKPRRPRAVVLCPTRELSEQVFRV+KSISHHARFRSTMVSGGGRLRPQ
Sbjct: 181 LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSL+NPIDMVVGTPGR+LQHIE GNMVYGDIKYLVLDEADTMFD GFGPDIRKF+ PLK
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+RAS + QGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQ+RVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK++D DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV KKD +LA RIEEAIRKNES
Sbjct: 481 SLVGKKDNILATRIEEAIRKNES 503
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/323 (88%), Positives = 305/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLRHDEA LG+ +KPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 152 LLRHDEATLGMSLKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGTRLRPQ 211
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI++GN+VYGDIKYLVLDEADTMFD+GFG DIRKFL PLK
Sbjct: 212 EDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLK 271
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASKP QGFQTVLVSATMTKAVQKL+DEE +GI HLRTST K+IA+ARHDFIKLSGS
Sbjct: 272 NRASKPGDQGFQTVLVSATMTKAVQKLIDEEFEGIVHLRTSTFQKRIATARHDFIKLSGS 331
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 332 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 391
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDL+VDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 392 LNKFRNEEGDCPTLVCTDLAARGLDLEVDHVIMFDFPKNSIDYLHRTGRTARMGAKGKVT 451
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV KKDV LA RIE+A++KNES
Sbjct: 452 SLVTKKDVPLATRIEDAMKKNES 474
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 282/323 (87%), Positives = 302/323 (93%), Gaps = 5/323 (1%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG R+RPQ
Sbjct: 169 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQ 228
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 229 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 288
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRT+T K++A+ARHDFIKLSGS
Sbjct: 289 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGS 348
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 349 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 408
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKG
Sbjct: 409 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKG--- 465
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
VAKKDV LA RIEEA++KNES
Sbjct: 466 --VAKKDVTLATRIEEAMKKNES 486
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust.
Identities = 281/323 (86%), Positives = 306/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DE + G+L+KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFR TMVSGGGRLRPQ
Sbjct: 190 LLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQ 249
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNNPID+VVGTPGR+LQHIE+GNMVYGDIKYLVLDEADTMFDRGFGPDIRKF+ PLK
Sbjct: 250 EDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLK 309
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASKP+G GFQT+LV+ATMTKAVQ L+DEE GI HLRTSTLHKKI+SARHDFIKL+GS
Sbjct: 310 NRASKPDGLGFQTILVTATMTKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDFIKLAGS 369
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTL+SSRAVDHFL ENQIS VNYHGEVPA++RVEN
Sbjct: 370 ENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISAVNYHGEVPAEQRVEN 429
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK++ DCPTLVCTDLAARGLDLDVDHV+MFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 430 LRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVT 489
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKD+ LA +IE+A+RKNES
Sbjct: 490 SLVAKKDLDLASKIEDALRKNES 512
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/323 (86%), Positives = 303/323 (93%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLRHDEA LG+ MKPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG RL+PQ
Sbjct: 179 LLRHDEATLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGTRLKPQ 238
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI++GN+VYGDIKYLVLDEADTMFD+GFG DIRKFL PLK
Sbjct: 239 EDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLK 298
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NR+SKP QG QT+LVSATMTK VQKL+DEE +GI HLRTST K+IA+ARHDFIKLSGS
Sbjct: 299 NRSSKPGDQGLQTILVSATMTKGVQKLIDEEFEGIEHLRTSTFQKRIATARHDFIKLSGS 358
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL EN ISTVNYHGEVPA+ERVEN
Sbjct: 359 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVEN 418
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDL+VDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 419 LNKFRNEEGDCPTLVCTDLAARGLDLEVDHVIMFDFPKNSIDYLHRTGRTARMGAKGKVT 478
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SL+AKKDV LA RIE+A++KNES
Sbjct: 479 SLIAKKDVGLATRIEDAMKKNES 501
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 276/322 (85%), Positives = 304/322 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DE M G+++KP+RPRAVVLCPTRELSEQVFRVAK+ISHHARFR TMVSGGGRLRPQ
Sbjct: 170 LLRRDEQMNGLVLKPKRPRAVVLCPTRELSEQVFRVAKAISHHARFRCTMVSGGGRLRPQ 229
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
E+SL+NPIDMVVGTPGRILQHIE+GNMVYGDI+Y+VLDEADTMFDRGFGPDI+KFL PLK
Sbjct: 230 EESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLK 289
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+RASKP+ GFQTVLV+ATMTKAVQ LVDEE QGI HLRTS+LHKKI++ARHDFIKLSG+
Sbjct: 290 HRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGT 349
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKL++LLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA +RVEN
Sbjct: 350 ENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVEN 409
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKFK+ + DCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK+T
Sbjct: 410 LNKFKSNNDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKIT 469
Query: 301 SLVAKKDVLLADRIEEAIRKNE 322
SLV KKD LA +IEEAI+KNE
Sbjct: 470 SLVTKKDYSLATKIEEAIKKNE 491
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/308 (88%), Positives = 294/308 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+LG+LMKPRRPRA+VLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGR+RPQ
Sbjct: 182 LLRRDEALLGLLMKPRRPRAIVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRMRPQ 241
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN+PIDM+VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL PLK
Sbjct: 242 EDSLNSPIDMIVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLK 301
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASKP+G GFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 302 NRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 361
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA++RVEN
Sbjct: 362 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLAENQISTVNYHGEVPAEQRVEN 421
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK++DGDCPTLVCTDLAARGLDLDVDHV+MFDFPLNSIDYLHRTGRTARMGAK V
Sbjct: 422 LQKFKSDDGDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKDNVR 481
Query: 301 SLVAKKDV 308
+A+ +
Sbjct: 482 RDIARAQI 489
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/323 (85%), Positives = 297/323 (91%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV+RVAKSISHHARFRS +VSGG R+RPQ
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMVVGTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDITYLVLDEADTMFDRGFGPEIRKFLAPLN 292
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
RA K N QGFQTVLV+ATMT AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 293 QRALKTNDQGFQTVLVTATMTTAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDHFL+ENQISTVNYHGEVPA +RVEN
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPADQRVEN 412
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV++KD +LA RIEEA+R NES
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNES 495
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 276/323 (85%), Positives = 298/323 (92%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV+RVAKSISHHARFRS +VSGG R+RPQ
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMVVGTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
RA K N QGFQTVLV+ATMT AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPA++RVEN
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV++KD +LA RIEEA+R NES
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNES 495
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/323 (85%), Positives = 297/323 (91%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV+RVAKSISHHARFRS +VSGG R+RPQ
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMV GTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 233 EDSLNNAIDMVAGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
RA K N QGFQTVLV+ATMT AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPA++RVEN
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV++KD +LA RIEEA+R NES
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNES 495
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/297 (79%), Positives = 253/297 (85%), Gaps = 11/297 (3%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV HHARFRS +VSGG R+RPQ
Sbjct: 177 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQV--CLHQDYHHARFRSILVSGGSRIRPQ 234
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMVVGTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 235 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 294
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
V+ +AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 295 QHIK---------VVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 345
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPA++RVEN
Sbjct: 346 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 405
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKG
Sbjct: 406 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 462
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/323 (66%), Positives = 246/323 (76%), Gaps = 24/323 (7%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
LR DEA G + RRPRAVVLCPTREL+EQVFRVAKS+ HHARFR+ MV GG R++ QE
Sbjct: 243 LRRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCHHARFRAAMVGGGSRMKTQE 302
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
DSLN ID++V TPGR+L HIE GNM YGD+KY+VLDEADTMFD+GFG ++RKFL PL+N
Sbjct: 303 DSLNKAIDLIVATPGRLLMHIEQGNMAYGDLKYVVLDEADTMFDKGFGVEVRKFLNPLRN 362
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
R+ +P G+ FQTVLV+AT+TKAVQ L+DEE GI H+ TSTLHKKI
Sbjct: 363 RSRQPEGEPFQTVLVTATITKAVQSLLDEEFPGIKHIYTSTLHKKI-------------- 408
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
LEP L+KG +VMVFCNTL S RAVDHFL+E ++VNYHG +PA ERVENL
Sbjct: 409 ---------LEPELAKGKRVMVFCNTLGSCRAVDHFLSERGTTSVNYHGAIPADERVENL 459
Query: 242 NKFKNEDGDC-PTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
KFKN D D P LVCTDLAARGLDL DHVI FDFPLN IDYLHRTGRTARMG KG VT
Sbjct: 460 EKFKNADEDSLPALVCTDLAARGLDLVCDHVINFDFPLNPIDYLHRTGRTARMGRKGMVT 519
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV K+D LA ++EEA+RK ES
Sbjct: 520 SLVTKRDQTLAIQLEEAMRKGES 542
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/331 (61%), Positives = 263/331 (79%), Gaps = 17/331 (5%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQV--FRVAKSIS-----HHARFRSTMVSGG 54
LR DE G ++ R+PRA+VLCPTREL+EQV F ++S+ HHARFRS M+SGG
Sbjct: 168 LRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSFCHHARFRSAMISGG 227
Query: 55 GRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK 114
R RPQ D+LN +DMVVGTPGR+L H+E+GN+ +GDIKY+V+DEADTMFDRGFGP+++K
Sbjct: 228 FRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMFDRGFGPELKK 287
Query: 115 FLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174
+ PL+NRA + NG FQT+L +VQKL+D E GI H+ TSTLHKK+ ++RH F
Sbjct: 288 IIDPLRNRALR-NGSDFQTIL-------SVQKLLDTEFPGIRHIFTSTLHKKVDTSRHFF 339
Query: 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPA 234
K+ G+ NKLEAL+QVLEP+L+KG++ MVFC +++S RAVDH+LNE + VNYHGEVPA
Sbjct: 340 QKVPGNINKLEALVQVLEPALAKGSRCMVFCRSVDSCRAVDHYLNEMDVHCVNYHGEVPA 399
Query: 235 QERVENLNKFKNEDGD--CPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTAR 292
++R++NL KFK EDG+ P L+CTDLAARGLDL VDHVI FDFP SIDYLHR+GRTAR
Sbjct: 400 EDRIKNLAKFKIEDGEGPVPALICTDLAARGLDLQVDHVINFDFPSTSIDYLHRSGRTAR 459
Query: 293 MGAKGKVTSLVAKKDVLLADRIEEAIRKNES 323
MG KG+VTSLV K+++ LA+R+E+A+R+NE+
Sbjct: 460 MGLKGRVTSLVTKRELALANRLEDAMRRNET 490
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/303 (62%), Positives = 240/303 (79%), Gaps = 15/303 (4%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQV--FRVAKSI---SHHARFRSTMVSGGGR 56
LR DE G ++ R+PRA+VLCPTREL+EQV F ++S+ SHHARFRS M+SGG R
Sbjct: 168 LRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSHHARFRSAMISGGFR 227
Query: 57 LRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL 116
RPQ D+LN +DMVVGTPGR+L H+E+GN+ +GDIKY+V+DEADTMFDRGFGP+++K +
Sbjct: 228 PRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMFDRGFGPELKKII 287
Query: 117 VPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176
PL+NRA + NG FQT+L +VQKL+D E GI H+ TSTLHKK+ ++RH F K
Sbjct: 288 DPLRNRALR-NGSDFQTIL-------SVQKLLDTEFPGIRHIFTSTLHKKVDTSRHFFQK 339
Query: 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
+ G+ NKLEAL+QVLEP+L+KG++ MVFC +++S RAVDH+LNE + VNYHGEVPA++
Sbjct: 340 VPGNINKLEALVQVLEPALAKGSRCMVFCRSVDSCRAVDHYLNEMDVHCVNYHGEVPAED 399
Query: 237 RVENLNKFKNEDGD--CPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMG 294
R++NL KFK EDG+ P L+CTDLAARGLDL VDHVI FDFP SIDYLHR+GRTARMG
Sbjct: 400 RIKNLAKFKIEDGEGPVPALICTDLAARGLDLQVDHVINFDFPSTSIDYLHRSGRTARMG 459
Query: 295 AKG 297
KG
Sbjct: 460 LKG 462
>gi|413942754|gb|AFW75403.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 360
Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/200 (84%), Positives = 187/200 (93%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQV+RVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 156 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 215
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 216 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 275
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP+ QGFQTVLV+ATMTKAVQKL+DEE +GI HLRTS+ K++++ARHDFIKLSG+
Sbjct: 276 NRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 335
Query: 181 ENKLEALLQVLEPSLSKGNK 200
ENKLEALLQVLEPSL KG +
Sbjct: 336 ENKLEALLQVLEPSLGKGKQ 355
>gi|384253618|gb|EIE27092.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 372
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/317 (51%), Positives = 232/317 (73%), Gaps = 12/317 (3%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
V KP+RPRA++L PTREL++Q+ VAKSISH A+FRS ++GGG + Q+++L P+D+
Sbjct: 44 VQAKPKRPRAIILGPTRELTDQILSVAKSISHKAKFRSACINGGGSMGQQKEALERPLDI 103
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+VGTP +++QH E G++ +GD++Y+VLDEADTMFD+GFGP++R L PL+ SKP Q
Sbjct: 104 LVGTPQKLVQHAEKGHLYWGDVQYVVLDEADTMFDKGFGPEVRAVLGPLR---SKP--QP 158
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
T+LV AT+++AV+KL+D E + + TS+LH+ + ARH F+ + NKL+ L Q+
Sbjct: 159 ASTILVVATLSQAVRKLLDTEFPNLKRVETSSLHRGVVGARHSFLAAPPNANKLDVLSQI 218
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE--- 247
+ ++G ++MVFCNTL+S RA +H L E + T+ YHG+VP R E + +F N
Sbjct: 219 VTGEAARGKRLMVFCNTLDSCRATEHHLRERGVPTLCYHGDVPLDGRREAIAQFSNSEPG 278
Query: 248 -DGDCPTLVCTDLAARGLDLD--VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG P LVCTDLAARGLD+ VDHV+ FDFPLN +DY+HRTGRTAR GA G++TS+VA
Sbjct: 279 PDGQ-PVLVCTDLAARGLDMPAAVDHVVNFDFPLNPVDYIHRTGRTARAGASGRITSIVA 337
Query: 305 KKDVLLADRIEEAIRKN 321
K+D +LA RI+EA+ +N
Sbjct: 338 KRDAVLAGRIKEALEQN 354
>gi|307105623|gb|EFN53871.1| hypothetical protein CHLNCDRAFT_58353 [Chlorella variabilis]
Length = 572
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 177/335 (52%), Positives = 236/335 (70%), Gaps = 19/335 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+ E + G +PRRPRA+VL PTREL++Q+ RVAK++SH A+FRS++V+GGG + Q
Sbjct: 125 LLKEGEQLRGAAARPRRPRALVLGPTRELTDQILRVAKALSHTAKFRSSVVNGGGDMGGQ 184
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
++L P+D++VGTP R++QH E ++ YGD++ +VLDEADTMFDRGFGP+++ L ++
Sbjct: 185 REALERPLDVLVGTPQRVMQHAEKSHLYYGDVEVVVLDEADTMFDRGFGPEVKAILAAVR 244
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ Q + VLVSATM+KAV +L+DEE G+ + TS+LH+ +A ARH F+ + +
Sbjct: 245 GKE-----QPARCVLVSATMSKAVGRLIDEEFPGMRRVETSSLHRGVAGARHAFVPMPAA 299
Query: 181 ENKLEALLQ--------VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232
NKL+ LLQ V+E +G +VMVFCNTL S RA DHFL E + T YHG+V
Sbjct: 300 ANKLDLLLQASRRGGLGVVEGEHQRGKRVMVFCNTLASCRAADHFLTERGLQTACYHGDV 359
Query: 233 PAQERVENLNKFKNEDGDC----PTLVCTDLAARGLDLD--VDHVIMFDFPLNSIDYLHR 286
P ER + F DG P LVCTDLAARGLD+ VDHV+ FDFPLN IDYLHR
Sbjct: 360 PPDERRAAMQSFAGGDGVSGERPPLLVCTDLAARGLDMPGRVDHVVNFDFPLNPIDYLHR 419
Query: 287 TGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321
TGRTAR GA GK+TSLVAK D +LA+RIEEA+++
Sbjct: 420 TGRTARAGATGKITSLVAKGDRVLAERIEEALQRG 454
>gi|145346658|ref|XP_001417802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578030|gb|ABO96095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 436
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 218/312 (69%), Gaps = 9/312 (2%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L KP+RP+ VV CPTREL+EQV VAK++SH A+F S +V GG RL Q++ L++ ID+V
Sbjct: 57 LAKPKRPKVVVACPTRELAEQVAEVAKALSHVAKFSSYLVVGGRRLGTQKERLDSAIDVV 116
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
+GTPGR+++H++ GN+ G + +VLDEADT+F+ GFG ++++ L PLK R +G
Sbjct: 117 IGTPGRLIKHVDQGNLFLGSVDAMVLDEADTLFEAGFGDEVKRLLRPLKARP-----EGK 171
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
VLVSATM ++KLVDEE + +++T +LH+ +H F+ G +K+ L Q++
Sbjct: 172 TCVLVSATMPDRLKKLVDEELPALQYIKTDSLHRSAPGLKHRFVDCPGDVDKMTVLEQIV 231
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD- 250
P +G K+M+FCNTL S AV+ + E I TV YHG++ + R + + +F + D D
Sbjct: 232 APEHKQGKKLMIFCNTLPSCIAVERTMFEADIRTVQYHGDMTSDARADAMREFIDADADE 291
Query: 251 CPTLVCTDLAARGLD---LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
T+VCTDLAARGLD + VDHV+ FDFP+NS+DY+HR+GRTAR GA GKVT+LVAKKD
Sbjct: 292 NLTMVCTDLAARGLDFGRVKVDHVVNFDFPMNSLDYIHRSGRTARAGAGGKVTNLVAKKD 351
Query: 308 VLLADRIEEAIR 319
+LA I+ A++
Sbjct: 352 RVLASEIDNAVK 363
>gi|412989029|emb|CCO15620.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 222/319 (69%), Gaps = 11/319 (3%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L K RRPRA+++ PTREL+EQ+F V KS+SH+A+ S ++ GG Q+D+L P+D+V
Sbjct: 151 LAKSRRPRALIVSPTRELAEQIFAVTKSLSHYAKVSSRLILGGRPFALQKDNLEAPVDVV 210
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNR------ASK 125
VGTPGR+++H E+ ++ G K++VLDEADT+F+ GFG D+ + L P+KNR +
Sbjct: 211 VGTPGRLVKHCEEKSLFLGSCKFVVLDEADTLFEAGFGEDVERLLRPVKNRNRGGDDGDE 270
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
+ VLVSATM ++KL+D + +++T +LHK +H+F+ + GSE+K++
Sbjct: 271 SKKKSTTIVLVSATMPDRLKKLIDTSLPDVQYVKTQSLHKSAPGLKHNFVNVPGSEDKMK 330
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L ++ P +G +VMVFCNT++S AV+ + E ++TV YHG++ ++ERVE++ F
Sbjct: 331 FLEDIVVPMHERGKRVMVFCNTVSSCVAVEKTMAERNVNTVQYHGDMSSEERVESMKAFC 390
Query: 246 NED--GDCPTLVCTDLAARGLD---LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+ D D LVCTDLAARGLD + VD+V+ FDFPLN +DY+HR+GRTAR GAKG VT
Sbjct: 391 DADPEDDNLILVCTDLAARGLDFAGVKVDNVVNFDFPLNPVDYIHRSGRTARAGAKGMVT 450
Query: 301 SLVAKKDVLLADRIEEAIR 319
+L++K+D +LA+ I+ A+R
Sbjct: 451 NLISKRDKVLANEIDVAVR 469
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/330 (44%), Positives = 217/330 (65%), Gaps = 14/330 (4%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
++ E G KP+RPR +++ PTREL+EQV VAK++SHH +F S ++ GG + Q
Sbjct: 63 MKDAERETGARAKPKRPRVLIVGPTRELAEQVRSVAKAVSHHCKFSSELIIGGEKFATQR 122
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L+ +D+VVGTPGRI++H E+GN+ ++ +++LDEADT+F+ GFG ++R+ L PL+
Sbjct: 123 QVLDRSLDVVVGTPGRIIKHCEEGNLFLSNVTHVILDEADTLFEAGFGDEVRRLLRPLQK 182
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
N +G Q ++VSATM + V K+V E + + T +LHK + RH F+ GS
Sbjct: 183 -----NPEGKQCIVVSATMAEKVAKMVSAELPDLQRIDTPSLHKSAPNLRHRFVDCPGSV 237
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+K+ + Q++ G K MVFCNT+ S +AV+ LNE ++ V Y+G++ A+ER E++
Sbjct: 238 DKMAIVEQIVSGDFRSGKKTMVFCNTMPSCQAVEFSLNEAELPVVMYNGDMTAEERKESM 297
Query: 242 NKF---KNEDGDCPTLVCTDLAARGLDL------DVDHVIMFDFPLNSIDYLHRTGRTAR 292
+F + DG +VCTDLAARGLD VDHV+ FDFP+N IDY+HR+GRTAR
Sbjct: 298 REFVEGSHADGTAVVMVCTDLAARGLDFGGGEKGKVDHVVNFDFPMNPIDYIHRSGRTAR 357
Query: 293 MGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322
GA GKVT+LVAKKD +LA I+ A++ +
Sbjct: 358 AGATGKVTNLVAKKDRILAQEIDVAVKMGQ 387
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/315 (47%), Positives = 214/315 (67%), Gaps = 14/315 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+RPR +V+ PTREL+EQV VAKS+SHHARF S +V GG + Q L+ +D+VVG
Sbjct: 170 RPKRPRVLVVSPTRELAEQVAGVAKSLSHHARFSSALVIGGDKFATQRTQLDRSLDVVVG 229
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+++H+++GNM G + ++VLDEADT+F+ GFG DIR L PL+ KP G+
Sbjct: 230 TPGRLVKHVKEGNMYLGRVTHVVLDEADTLFEAGFGDDIRVLLGPLQK---KPEGK--SC 284
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
V+VSATM+ V K ++E+ GI + T +LH+ + +H F+ GS +K+ + Q++E
Sbjct: 285 VIVSATMSDKVVKTIEEDLPGIEKIDTPSLHRAAPNLKHKFVDCPGSIDKMAVVTQLIEG 344
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN---EDGD 250
G K MVF NT+ S +AV++ L E + V Y+G++ +++R E++ F + ED
Sbjct: 345 DFRAGKKTMVFANTMPSCQAVEYALVEAGLPVVMYNGDMTSEKRAESMEAFVSGAAEDNS 404
Query: 251 CPTLVCTDLAARGLDL------DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+VCTDLAARGLD VDHV+ FDFP+N++DYLHR+GRTAR GA GKVT+LVA
Sbjct: 405 LVVMVCTDLAARGLDFGGDSKSKVDHVVNFDFPMNAVDYLHRSGRTARAGAPGKVTNLVA 464
Query: 305 KKDVLLADRIEEAIR 319
KKD +LA I+ A++
Sbjct: 465 KKDRVLAGEIDVAVK 479
>gi|147810322|emb|CAN60389.1| hypothetical protein VITISV_010912 [Vitis vinifera]
Length = 297
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 143/181 (79%), Positives = 148/181 (81%), Gaps = 26/181 (14%)
Query: 143 AVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVM 202
AVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL+KGNKVM
Sbjct: 10 AVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNKVM 69
Query: 203 VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262
VFCNTLNSSRAVDHFL ENQI TVNYHGEVPA++RVENL KFK EDGDCPTL
Sbjct: 70 VFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVENLKKFKTEDGDCPTL-------- 121
Query: 263 GLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322
IDYLHRTGRTARMGAKGKVTSLVAKKD+LLA RIEEAIRKNE
Sbjct: 122 ------------------IDYLHRTGRTARMGAKGKVTSLVAKKDLLLATRIEEAIRKNE 163
Query: 323 S 323
S
Sbjct: 164 S 164
>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 488
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 10/308 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+RPRA+VL PTREL+ QV VAK +S +F S V GG Q L +D+VVGTP
Sbjct: 98 KRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTP 157
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF-QTV 134
GR+L+H E GN Y+V+DE DTM +GF DI K PL + PN + Q +
Sbjct: 158 GRLLKHHEAGNFFMSKANYVVVDEVDTMLTQGFAADIEKLNRPL---LANPNRRDMAQFI 214
Query: 135 LVSATMTKAVQKLVDE--ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
V+AT+TKAV+KL+ E + + + T +H + S RH I + G +K+ AL+ + +
Sbjct: 215 FVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMIDIKG-RDKMSALIDIAQ 273
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
L + +VFCNT+ S RA + L E + ++YHGEVP+ ER NL +FK G
Sbjct: 274 QHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKA--GQAK 331
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LVCTD+A+RGLD+ DVDHV+MFDFPLN IDYLHR+GRTARMGAKG+VTSL+AK+D++LA
Sbjct: 332 YLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLA 391
Query: 312 DRIEEAIR 319
IE+A++
Sbjct: 392 AAIEQAVQ 399
>gi|281202418|gb|EFA76621.1| ATP-dependent RNA helicase [Polysphondylium pallidum PN500]
Length = 637
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 209/317 (65%), Gaps = 13/317 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVS--GGGRLRPQEDSLNNPIDMVV 72
P RPRA++L PTREL +QV +V K I+HH + T ++ GG + +D PID+VV
Sbjct: 313 PARPRAIILVPTRELVKQVSQVTKQIAHHHKLSCTGIARGGGENAKHLKDFKERPIDIVV 372
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD--RGFGPDIRKFLVPLKNR---ASKPN 127
TPG ++Q IE+ + +G ++YLV+DEAD+MF +GF D++K L P++ R + P+
Sbjct: 373 STPGVLIQLIENKQIFFGYLEYLVVDEADSMFTDGKGFDEDMKKILTPIEYRLMNKNIPD 432
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
+ +V+ SAT+T+ + + I+ + T +HK + + FI + G + K EAL
Sbjct: 433 YKNIYSVICSATLTQQLMSTIKSLFPSISKISTPYIHKSLNTLEQQFITVKGGD-KHEAL 491
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L+ + PS SK K+++FCN+ +S R+ +HFLNEN S + HG++P++ R N +F
Sbjct: 492 LRSVTPSKSK--KILIFCNSPDSCRSTEHFLNENGFSVTSLHGDIPSRLRQSNWKEFSM- 548
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G+ LVCTD+A+RG+D+ V+HVI+FDFP N IDYLHR GRTAR G +G VTS++ KK
Sbjct: 549 -GEKQILVCTDIASRGIDIKSVEHVILFDFPSNPIDYLHRIGRTARAGQRGVVTSIIGKK 607
Query: 307 DVLLADRIEEAIRKNES 323
D++L++ I+EA+++ +S
Sbjct: 608 DLVLSNAIQEALKRGDS 624
>gi|302847799|ref|XP_002955433.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
gi|300259275|gb|EFJ43504.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
Length = 554
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 192/302 (63%), Gaps = 22/302 (7%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
L+ +EA G + +P+RPR +VL PTREL++Q+ VAK + H +FR+T + + Q
Sbjct: 137 LKQEEAS-GFVPRPKRPRVLVLGPTRELTDQITGVAKKLCHTVKFRATCANADTSISQQA 195
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+++ PID++V TP R L HI++GN+ Y DI++LV+DEADT+F +G+G ++ L PL+
Sbjct: 196 RAMSGPIDVLVATPTRFLHHIKEGNVAYRDIRWLVVDEADTVFGQGWGEEVAAILAPLR- 254
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
SKP+ + + +A+++LV + + L+TSTLH+ ++ + H F+ L
Sbjct: 255 --SKPD--------PAHVLLRAIRELVPDAKE----LKTSTLHRAVSGSSHQFMTLPPGG 300
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
NKL+ L ++L + KV+VFCNT++S RAV+HF E + V YHGE+P++ER E++
Sbjct: 301 NKLQLLAEILGADNRRAQKVLVFCNTVDSCRAVEHFAREEGLPCVCYHGEMPSEERQESM 360
Query: 242 NKFKNEDGD----CPTLVCTDLAARGLDL--DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
F P ++ TDLAARGLD VDHV+ FDFP S+DYLHRTGRTAR G
Sbjct: 361 ATFAAAVAGGGARLPIMIATDLAARGLDFPGTVDHVVNFDFPTTSVDYLHRTGRTARAGN 420
Query: 296 KG 297
G
Sbjct: 421 TG 422
>gi|330798542|ref|XP_003287311.1| hypothetical protein DICPUDRAFT_151404 [Dictyostelium purpureum]
gi|325082704|gb|EGC36178.1| hypothetical protein DICPUDRAFT_151404 [Dictyostelium purpureum]
Length = 1008
Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats.
Identities = 132/320 (41%), Positives = 192/320 (60%), Gaps = 12/320 (3%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVS-GGGRLRPQEDSLNN-PIDMVV 72
PRRP+A+++ PTREL+ QV VAK I+H A+F T+VS GGG L + PID+++
Sbjct: 671 PRRPKAIIIVPTRELALQVMGVAKKIAHKAKFSCTVVSSGGGDLNKYVRTFKKKPIDVLI 730
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD--RGFGPDIRKFLVPLKNRASKPNGQG 130
TPG + IE + + ++++V+DEAD+MF +GF +I + P K R +G
Sbjct: 731 STPGMLQMLIEREMIYFSKLQHIVIDEADSMFTIGKGFDQEIENIIQPFKYRLQHKQEKG 790
Query: 131 F---QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEA 186
V+ SAT+T + +D I + T T+H+ + + FI + +K A
Sbjct: 791 VLPVNAVICSATLTDQLMSTIDSIFPSIEKIATPTIHRSLNTLSQKFIDVKEKGGDKHNA 850
Query: 187 LLQVLEPSLSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
LL+ + + + K ++FCNT NS R+ ++FL EN+ + HGE+P R N F
Sbjct: 851 LLKAINEAKTPTPPRKTLIFCNTPNSVRSTEYFLTENKFKATSLHGEMPPHRRSNNWRTF 910
Query: 245 KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
N+ DC LV TD+A+RG+D+D VDHVI+FDFP N IDYLHR GRTAR G G VTSL+
Sbjct: 911 TNQ-ADCQFLVSTDIASRGIDIDCVDHVILFDFPSNPIDYLHRIGRTARAGNAGLVTSLI 969
Query: 304 AKKDVLLADRIEEAIRKNES 323
K+D +LA+ I+E+IRK S
Sbjct: 970 TKRDSILANSIKESIRKGYS 989
>gi|328870114|gb|EGG18489.1| ATP-dependent RNA helicase [Dictyostelium fasciculatum]
Length = 1703
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 129/317 (40%), Positives = 199/317 (62%), Gaps = 21/317 (6%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL--NNPIDMVV 72
P+RPRA++L PTREL QV V K ++H+ + +SGGG + + + P+D+VV
Sbjct: 1384 PKRPRAIILVPTRELVLQVTAVVKKLAHYEKVSCCGISGGGGDITKYLQMFRSKPVDIVV 1443
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD--RGFGPDIRKFLVPLKNRASKPNGQG 130
TPG ++ IE N +V+DEAD+MF +GF D++K L P++ R + +G
Sbjct: 1444 STPGILISLIEKKN--------IVVDEADSMFTQGKGFDDDMKKILAPVEYRLKNKHVEG 1495
Query: 131 FQTV---LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
++++ + SAT+T+ + V + L T T+HK + + FI + G + K EAL
Sbjct: 1496 YKSIYATICSATLTQQLLSNVQSLFPNVVKLATPTIHKSLNTLEQQFISVQGGD-KHEAL 1554
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
++ ++PS SK +V+VFCN+ NS R+ ++FL EN + + HGE+P + R +N +F N
Sbjct: 1555 MRAIKPSQSK--RVLVFCNSPNSCRSTEYFLTENGFNATSLHGEIPPKTRSKNWRQFLNN 1612
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+ LV TD+A+RG+D+ VDHVI+FDFP N IDYLHR GRTAR G KG VT ++AKK
Sbjct: 1613 EKS--ILVSTDIASRGIDVSSVDHVIIFDFPSNPIDYLHRIGRTARAGKKGTVTCIIAKK 1670
Query: 307 DVLLADRIEEAIRKNES 323
D +LA+ I+ A+++ +S
Sbjct: 1671 DQVLANAIQAALKRGDS 1687
>gi|219126769|ref|XP_002183622.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404859|gb|EEC44804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 531
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 65/386 (16%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+ E +P+RPR ++L PTREL Q+ V KS+SH + S ++GG Q
Sbjct: 92 MLKQGEVFADYERRPKRPRLLILVPTRELVVQITSVIKSVSHSIKLSSCSITGGEDYGVQ 151
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
LN PID+VV TPGR+ +H +D N+ G ++++V+DE DTM ++GF ++R+ L P+
Sbjct: 152 RRQLNRPIDVVVATPGRLTKHWKDSNLFLGSLEHIVVDEMDTMLEQGFYRELRQLLYPVL 211
Query: 121 ---------NRASKPNGQGFQTVLVSATMTKAVQKLVDE-----------------ECQG 154
N + + + VL SATMT+ +QK++ + E G
Sbjct: 212 YHKQADQEINVEQDLDAKAPRIVLTSATMTQQIQKIIGDSDNKKNLVNAKRHHRKVEDAG 271
Query: 155 IA-----------HLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKV-- 201
L+ + LHK + + F+ + G+ +KL L+ ++ S G V
Sbjct: 272 FQVKVPMVLPRTKVLKAAGLHKTVPRLQQVFVDV-GATDKLSLLVDIVS-SGGSGAAVAA 329
Query: 202 ---------MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK------- 245
M+FCNT S RA L+E +I ++ YHG++ + R ENL +F+
Sbjct: 330 SLTDQQALTMIFCNTAASCRAAQFALSEARIESLAYHGDLNSAMRSENLKRFRAAGKKNC 389
Query: 246 -NEDGDCP-TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR-----MGAKG 297
N + P LVCTDLAARGLD+ VDH++MFDFPLN++DYLHR+GRTAR G
Sbjct: 390 DNALAEEPRVLVCTDLAARGLDVPQVDHIVMFDFPLNALDYLHRSGRTARGVGGDRTGNG 449
Query: 298 KVTSLVAKKDVLLADRIEEAIRKNES 323
+VT+L++K+D +LA+ IE+A+ + ++
Sbjct: 450 RVTALISKRDKVLANAIEQAVLRGDT 475
>gi|449017358|dbj|BAM80760.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 566
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 188/320 (58%), Gaps = 25/320 (7%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDM 70
L +P PRA+V+ PTREL+EQV V K +SH+ + R+ SG G R L P+D+
Sbjct: 169 LRRPGAPRALVITPTRELAEQVLGVCKHLSHYIKIRA--ASGLGVRRIVRAQLEEQPVDI 226
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF--DRGFGPDIRKFLVPLKNRASKPNG 128
++ T GR+LQ +++ + ++ +VLDE DT+ + GF DIR+ + +N
Sbjct: 227 LITTSGRLLQLLDEQLIRLRSVQTVVLDEVDTLLLDEGGFHDDIRQIMGKARNTQ----- 281
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q + V AT A QKL E C G + T LH+ ++ R FI++SG+ K + +L
Sbjct: 282 ---QFIAVGATHPTAAQKLYREFCPGAKPI-TVDLHQTPSNLRQRFIRVSGANGKTDEIL 337
Query: 189 QVLEPSLSK------GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
+L+ K G +VMVFCNT++S R +D+FL E+ +T NYHG++P R E
Sbjct: 338 ALLKEETHKKTRLLSGGRVMVFCNTVDSCRFLDYFLQEHGFTTANYHGDIPKDRREEEFQ 397
Query: 243 KFKNEDGDCPTLVCTDLAARGLDLD--VDHVIMFDFPLNSIDYLHRTGRTAR-MGAKGKV 299
F G+ LVCTD+AARGLD D +D VI+FDFP +IDYLHR GRTAR G V
Sbjct: 398 AFVR--GERQILVCTDIAARGLDYDHKIDQVILFDFPRTAIDYLHRAGRTARGPSGTGTV 455
Query: 300 TSLVAKKDVLLADRIEEAIR 319
TSLV KKD+ LA IE+A R
Sbjct: 456 TSLVTKKDLPLASFIEDATR 475
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 7/311 (2%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RPRA+VL P+REL+ QV VAK +SH A+F S ++ G R Q+ + +D+++GTPG
Sbjct: 122 RPRALVLLPSRELALQVASVAKQLSHSAKFASCTITSGERKSIQQRNTARRLDLIIGTPG 181
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDR--GFGPDIRKFLVPLKNRASKPNGQGFQTV 134
R+ + I G+ I +V+DEADT+FD GF ++ L P++ A+K N Q Q V
Sbjct: 182 RVAKCISKGDFFVSRIDTVVVDEADTLFDAKMGFRKELDAVLGPIQASAAKRN-QPLQMV 240
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L +AT+ + +++ ++ + + +HK + R +F+++ E+K AL + L
Sbjct: 241 LAAATIRSPIDQVLKKKFGELRVVSDDKIHKTPTTIREEFVRVV-PESKHSALREALHLH 299
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ K MVFC S R+ +H L E+ V HG++P R E ++ F ED
Sbjct: 300 KRRAAKTMVFCRNSASVRSTEHMLREHGFQDAVCLHGDMPPARRHEAIHAF-TEDPHVNI 358
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LVCTDLAARGLD+D V HV+MFDFP +++DY+HR GRT R G +G VTSLV K D+ LA
Sbjct: 359 LVCTDLAARGLDIDTVKHVVMFDFPKSAVDYVHRAGRTGRAGEQGLVTSLVTKHDLALAM 418
Query: 313 RIEEAIRKNES 323
IE + R N +
Sbjct: 419 SIENSKRSNST 429
>gi|452822401|gb|EME29421.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 410
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 191/330 (57%), Gaps = 20/330 (6%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR--P 59
L+ E + + KP++PRA+V PTREL EQ+ RV K++SHH +FR+ + GGRL
Sbjct: 78 LKLQEELQSFIRKPKKPRALVFVPTRELGEQLLRVLKALSHHIKFRAVSLL-GGRLSFVQ 136
Query: 60 QEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL 119
Q+ SL +D+VV +P R+++H GN+ +GDI+++VLDE D + F D+ L L
Sbjct: 137 QKKSLEENVDIVVCSPSRLVKHAVSGNIYFGDIRFIVLDEVDALLGDDFVRDLDVLLAKL 196
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
+ K Q + V AT K V + ++ A L LH + +H F+ + G
Sbjct: 197 PKKEEK-----IQFIAVGATHPKQVFPIYEKYLPN-AKLVNDKLHLLPVNTKHVFVNIQG 250
Query: 180 SE--NKLEALLQVLE----PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233
+ +L +LLQ E P S N+++VFCNT+ S R V+H+L+E T+NYHGE+P
Sbjct: 251 DDATQELISLLQQEEEKENPRTS--NRIIVFCNTVASCRFVEHYLSERGYHTINYHGEIP 308
Query: 234 AQERVENLNKFKNEDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTAR 292
++R ++F + L+CTD+ ARGLD + V+ V+ F+FP +DY+HR GRT R
Sbjct: 309 PKKRKALFSEFLTQKH--VILICTDVGARGLDNVSVNLVLNFEFPTCVVDYIHRAGRTGR 366
Query: 293 MGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322
G GKV S + KKD+ LA IE I + +
Sbjct: 367 AGNSGKVVSFIRKKDLSLARAIESGISQKK 396
>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 470
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 187/311 (60%), Gaps = 7/311 (2%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RP A+VL P+REL+ QV VAK +SH A+F S ++ G R Q+ + + +D+++GTPG
Sbjct: 119 RPSALVLLPSRELALQVASVAKQLSHSAKFASCTITSGERKSIQQKNTSRRLDLIIGTPG 178
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDR--GFGPDIRKFLVPLKNRASKPNGQGFQTV 134
R+ + I G+ I +V+DEADT+FD GF ++ L ++ A+K N Q Q +
Sbjct: 179 RVAKCISKGDFFVSCIDTVVVDEADTLFDAKMGFRKELDAVLGTIQASAAKRN-QSLQMI 237
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L +AT+ + +++ ++ + + +HK AS R +F++++ E+K AL + L
Sbjct: 238 LAAATIRSPIDQILKKKFGELRVVSDDKIHKTPASIREEFVRVN-PESKHSALREALHLH 296
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ K M+FC S R+ +H L E+ V HG++P R + ++ F ED +
Sbjct: 297 RRRAAKTMIFCRNSASVRSTEHMLREHGFQDAVCLHGDMPPARRHDAIHAF-TEDSNVNI 355
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LVCTDLAARGLD++ V HV+MFDFP +++DY+HR GRT R G +G VTSLV K D+ LA
Sbjct: 356 LVCTDLAARGLDVEAVKHVVMFDFPKSAVDYVHRAGRTGRAGEQGLVTSLVTKHDLTLAM 415
Query: 313 RIEEAIRKNES 323
IE + R N +
Sbjct: 416 SIENSKRSNST 426
>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 494
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 180/313 (57%), Gaps = 11/313 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RPR ++ P+REL+ Q+ VAK ++HH +F S +V+ G + Q+ L PID+++GTPG
Sbjct: 118 RPRVLIAVPSRELALQLGSVAKQLAHHVKFASCVVTNGEHKKVQQQKLARPIDILIGTPG 177
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDR--GFGPDIRKFLVPLKNRASKPNGQGFQTV 134
RI+ I+ + I L+LDEADT+FD GF D++ L P++ K + Q++
Sbjct: 178 RIVTCIKKQDFYLSQIDTLILDEADTLFDAKMGFIDDLKAILAPIQASCHKRECK-LQSI 236
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
LV+AT TK+V ++ + +GI + + ++ + F++++ + K L LE
Sbjct: 237 LVAATATKSVGRVWNRMFEGIKLVSDNQFNRIPKEIKQTFVRVA-PQAKYTVLRDALEQH 295
Query: 195 LSKG----NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+G + ++FCN + S +A +H L +N T + H +VP R + F + G
Sbjct: 296 RGRGKAKFQRTIIFCNDIASCQAAEHMLRQNGFKTASLHKDVPKPIRQAAIQNF--DSGS 353
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
P LVCTDL RGLD+D ++HVIM DFP + IDY+HR GRT R G G VTS + K D
Sbjct: 354 VPVLVCTDLGGRGLDIDSIEHVIMLDFPRSVIDYIHRVGRTGRAGKAGYVTSFMTKGDTT 413
Query: 310 LADRIEEAIRKNE 322
+ +++++R E
Sbjct: 414 VYRMLQKSMRDAE 426
>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
Length = 349
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 179/297 (60%), Gaps = 16/297 (5%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
LR DE G+L + +RPRA ++ P REL+ Q+ + AKS+ HHARFRS + GG + +
Sbjct: 64 LREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQKWMR 123
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
D L +P+D++V TPG +L++ + + + D+ +LV+DEADTMFD F + L +
Sbjct: 124 DDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHTI-- 181
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKL--VDEECQGIAHLRT--STLHKKIASARHDFIKL 177
N Q ++ + T+ +++Q+L ++ + + HL T S LH+ + RH FIKL
Sbjct: 182 -----NVSQLQ-LIYNFTVYQSLQRLSCIEASEKTVKHLETCSSGLHRVLPHVRHKFIKL 235
Query: 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ E K E ++++L+ + +VFCN+ +S + L ++ +S + HG +P + R
Sbjct: 236 NQHE-KAERIVELLKKDSKSPGQTIVFCNSASSCDWLARHLEQHNLSLIRLHGNIPPKIR 294
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 293
E KF+N+ D LVCTD+A+RGLD DV HVI FDFP + +DY+HR GRT R+
Sbjct: 295 CERFEKFQNKTAD--ILVCTDIASRGLDTSDVSHVINFDFPNSMVDYIHRVGRTGRV 349
>gi|195998355|ref|XP_002109046.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
gi|190589822|gb|EDV29844.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
Length = 512
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 194/329 (58%), Gaps = 14/329 (4%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
++ +E G++ + RPRA ++ P+REL++Q +VAKS+ H +++R V GG + + E
Sbjct: 166 IKEEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSLCHVSKYRVVGVIGGKKQKLLE 225
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
+L P D+VV TPG ++++ + + D+ +LVLDEADT+FD F + L +K
Sbjct: 226 KALETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDESFYERSLEILEKIKI 285
Query: 122 RASKPNG-----QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176
R KP + Q +V AT+ K V+ +++ + + T HK + + D +K
Sbjct: 286 RGGKPMSLDTLQKDAQVTVVGATLPKRVEAILNPVIPNLKKVTTKGFHKLLPHIQQDILK 345
Query: 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
L + +K LL++L+ + ++FCNT++S + H+L + + + HG +P +E
Sbjct: 346 LKQT-SKAGTLLKLLKE--RRHGSTIIFCNTVDSCNWLGHYLAKVDLPLLRLHGGMPPEE 402
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
R+ +KF+ G+ L+ TD+A+RGLD +V+ VI FDFP++ DY+HR GRT R+G+
Sbjct: 403 RLIRYDKFQR--GEYNILIATDIASRGLDTKNVECVINFDFPISVADYIHRAGRTGRVGS 460
Query: 296 K--GKVTSLV-AKKDVLLADRIEEAIRKN 321
K G+V SLV ++K++ L +EEA +N
Sbjct: 461 KCTGRVISLVSSRKELSLTKLLEEAAARN 489
>gi|449664058|ref|XP_002155207.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Hydra
magnipapillata]
Length = 473
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 183/332 (55%), Gaps = 24/332 (7%)
Query: 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
+E G + + RPR +VL PTREL+ Q+ +V K SH+ RFRS V G + + +D +
Sbjct: 129 NEVEAGFIGRLSRPRVLVLSPTRELASQILKVFKHFSHYCRFRSVGVIGQNQKKWAKDYV 188
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+D+VVGTP IL+ + G + + D++Y+V DEADT+ D F +FL L +
Sbjct: 189 KGLVDVVVGTPSTILKWNQKGLLNFSDVRYVVFDEADTLMDDNFRNTTSEFLKLLDCESD 248
Query: 125 KPNGQGFQTVLVSATM-TKAV----QKLVD--EECQGIAHLRTSTLHKKIASARHDFIKL 177
NG Q +L +AT+ K V Q+ + + CQ S LHK + +H F+K
Sbjct: 249 SKNGTNIQFILTAATLPPKGVLGRYQEFIPDLQVCQ-------SNLHKVLPHIKHSFMK- 300
Query: 178 SGSENKLEALLQVLEPSLSKGN-KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
+ + K E L+ L LS+ + K ++FCNT S V L+E +I HG++ Q
Sbjct: 301 TRQDQKSELLINKLTLFLSQSDKKCIIFCNTSKSCNWVSAKLDELKIDHTKLHGDMNPQI 360
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
R+++ KF DG ++ TD+A+RGLD D+ V+ FD P N+ DY+HR+GRT R +
Sbjct: 361 RLQSYKKF--TDGKTRLMISTDIASRGLDSNDITLVVNFDCPFNATDYIHRSGRTGRAAS 418
Query: 296 -----KGKVTSLVAKKDVLLADRIEEAIRKNE 322
+ +T + K+ L A +++EA +KN+
Sbjct: 419 CFSKNEEVLTFVTQNKEFLFAKKVQEAAKKNK 450
>gi|452824296|gb|EME31300.1| ATP-dependent RNA helicase isoform 2 [Galdieria sulphuraria]
gi|452824297|gb|EME31301.1| ATP-dependent RNA helicase isoform 1 [Galdieria sulphuraria]
Length = 434
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 175/310 (56%), Gaps = 20/310 (6%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P RPR +V PTREL EQ+ +VAK +SH ARF T + GG + +E+SL+ P D+VV T
Sbjct: 114 PNRPRCLVFAPTRELGEQICKVAKKLSHRARFSCTEIVGGRSRKAEEESLSVPRDLVVAT 173
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQT 133
PGR L+H N++ +++++V DEAD +F R GF + ++FL+ ++ A + + Q
Sbjct: 174 PGRFLEHNRKKNIMLSELRHIVFDEADYLFSRLGFREETKEFLLNVERHAVLKDRKP-QM 232
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHK-----KIASARHDFIKLSGSENKLEALL 188
+ +A T V C + + + LH+ ++ S K+S LE L+
Sbjct: 233 IGTAALKTLEVDSFFHYYCPSTSFVLSDKLHQLPLEERVRSEPLYLAKVSEKRTALEKLV 292
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHF---LNENQ--ISTVNYHGEVPAQERVENLNK 243
+ E S ++ +K +VFCNT++S R VDH LNE + + YHGE+P +ER + +
Sbjct: 293 K--EISKNEDSKTIVFCNTVDSCRFVDHVLSGLNEKGECLPSACYHGEMPPKERRSSWIR 350
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F +D LVCTDL ARGLD+ + +IMFDFP + YLHR G R+ +G V SL
Sbjct: 351 FCEKDAG--FLVCTDLGARGLDVPSIGAIIMFDFPKTAASYLHRVG---RIRNEGVVYSL 405
Query: 303 VAKKDVLLAD 312
+ LA+
Sbjct: 406 ITHSSRKLAE 415
>gi|308804231|ref|XP_003079428.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116057883|emb|CAL54086.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 327
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 133/193 (68%), Gaps = 5/193 (2%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L KP+RP+ VV CPTREL+EQV VAK++SH A+F S +V GG RL Q++ L++P+D+V
Sbjct: 93 LAKPKRPKVVVTCPTRELAEQVAEVAKALSHVAKFSSCLVVGGKRLSTQKERLDSPVDVV 152
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
+GTPGR+++H+E GN+ G + +VLDEADT+F+ GFG ++++ L PLK R +G
Sbjct: 153 IGTPGRLIKHVEQGNLFLGSVDAMVLDEADTLFEAGFGDEVKRLLRPLKARP-----EGK 207
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
VLVSATM ++KLVDEE + +++T +LH+ +H FI G +K+ L Q++
Sbjct: 208 TCVLVSATMPDRLRKLVDEELPNLKYIKTDSLHRSAPGLKHRFIDCPGDVDKMTVLEQIV 267
Query: 192 EPSLSKGNKVMVF 204
P +G ++M+F
Sbjct: 268 VPEHRQGKRLMIF 280
>gi|365097957|ref|ZP_09331724.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363413202|gb|EHL20410.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 505
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHESSSTSPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +G
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLASSYLQNPVTIEVARPNETASTVEQRFYS-AGD 233
Query: 181 ENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ QVL+ S+G K +F N+ + L + T HG+ ER++
Sbjct: 234 DDKRRAIHQVLK---SRGIKQAFIFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKS--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ I+K
Sbjct: 349 AVTLVSGSDARLVADIEKLIKKK 371
>gi|156087551|ref|XP_001611182.1| RNA helicase family protein [Babesia bovis]
gi|154798436|gb|EDO07614.1| RNA helicase family protein [Babesia bovis]
Length = 1100
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 180/343 (52%), Gaps = 50/343 (14%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L P PRA+VL P REL++Q+ V K + H + S ++SGG Q D + +D+V
Sbjct: 551 LRHPNAPRALVLVPNRELADQILHVVKGLGHVVKISSEIISGGVYKGIQRDDMKRLVDVV 610
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
V TP R+L+ ++ ++YLVLDEADT+ + GF PD+ K L +K Q F
Sbjct: 611 VATPDRLLKM--KNHVKLHQLQYLVLDEADTLLNEGFWPDVAKVLDLIK--------QPF 660
Query: 132 QTVLVSAT-------------------------MTKAVQ-KLVDE--ECQGIAHLRTSTL 163
Q + V+A+ T+ V K +D +C+ I T+ +
Sbjct: 661 QLIQVAASSKYLLHFEKVQRELAKVPNLKGIKNTTREVNDKYLDRLTKCEQIVD--TAWV 718
Query: 164 HKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223
+ H F L G + LE + + + + KVMVFCN+++S RAV++ L + +
Sbjct: 719 DRPNRGVTHQFHYLKGEDKGLELVNLLKYDDVRRCRKVMVFCNSVSSCRAVEYILRDAGL 778
Query: 224 STVNYHGEVPAQERVENLNKF-KNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSID 282
+ HG++P +R +F ++ +G +VCTDLA+RGLDL+ D VIMFDFPLNS+D
Sbjct: 779 PATSLHGKIPIMQRRMYYKEFLRSSEG---IIVCTDLASRGLDLNADAVIMFDFPLNSMD 835
Query: 283 YLHRTGRTARM------GAKGKVTSLVAKKDVLLADRIEEAIR 319
YL R GR RM KG SLV K+D LA IE +++
Sbjct: 836 YLKRAGRVGRMINNDSIAPKGFAISLVKKRDRNLAIAIERSLK 878
>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 506
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 167/305 (54%), Gaps = 19/305 (6%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA+VL PTREL++QV + K + H RS +V GG ++PQ L ++++V T
Sbjct: 89 RHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQTLELKKGVEVLVAT 148
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQT 133
PGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L K R T
Sbjct: 149 PGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRI---------T 199
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + +++L Q + + + ++ F + +++K AL Q+L+
Sbjct: 200 LLFSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVD-ADDKRHALHQILK- 257
Query: 194 SLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
S+G K VF N+ + L + T HG+ ER++ L FK+ G+
Sbjct: 258 --SRGMKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKS--GEVD 313
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G S VAK D+ L
Sbjct: 314 LLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKSDIRLV 373
Query: 312 DRIEE 316
IE+
Sbjct: 374 ADIEK 378
>gi|347818470|ref|ZP_08871904.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 486
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 172/324 (53%), Gaps = 20/324 (6%)
Query: 1 LLRHDEAMLGVLMKPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRP 59
LL+H+ G R P RA+VL PTREL++QV R + H R RST+V GG ++P
Sbjct: 65 LLKHES---GSASPARHPVRALVLLPTRELADQVARQIALYAKHTRLRSTVVFGGMDMKP 121
Query: 60 QEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL 119
Q L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 122 QTIELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 181
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
+ + T+L SAT + +++L + + ++ A+ F +
Sbjct: 182 PKQRT--------TLLFSATFSPEIRRLAGSYLDNPVTIEVARPNETAATVEQRFYS-AN 232
Query: 180 SENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
E+K A+ QVL + G + +F N+ + L + T HG+ ER+
Sbjct: 233 DEDKRRAIHQVLR---THGLTQAFIFVNSKLGCARLARSLEREGLRTTALHGDKSQDERL 289
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L FK+ G LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 290 KALEAFKS--GAVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 298 KVTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ I+K
Sbjct: 348 LAFTLVSASDARLVADIEQLIKKK 371
>gi|118388510|ref|XP_001027352.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89309122|gb|EAS07110.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1110
Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats.
Identities = 100/309 (32%), Positives = 170/309 (55%), Gaps = 16/309 (5%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L P RP +++ PT+EL+ Q+ K + H A+F V+ ++ +L+ +D++
Sbjct: 135 LTTPNRPSIIIIVPTKELANQLEDECKKLIHFAKFTCLGVNNSKVFMREKKALDEGVDVL 194
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
+GTP RI +H E GN+ ++ Y V+DEADT D G+ I ++ + +R + +
Sbjct: 195 IGTPDRIERHREKGNLFLSNVSYFVVDEADTFLDSGYKEVIETYIKTITHRQEQIKEGNY 254
Query: 132 -----QTVLVSATMTKAVQKLVDEECQGI---AHLRTSTLHKKIASARHDFIKLSGSENK 183
+ + VSAT T ++ L + + H + H+FI G + K
Sbjct: 255 SKNIPKMIFVSATYTGQLRLLFESSFDNFKKIKLIIDKKTHMNLQHIEHEFIHCQGIDKK 314
Query: 184 LEALLQVLEPSLSKGNK----VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
E + ++L+ + K K +M+FCN++ S R++D+ L+E V++HG++P + R++
Sbjct: 315 -EPITKLLKEIMPKAQKQDGSIMIFCNSIPSCRSLDYTLSEEGYDVVSFHGDIPKRLRIQ 373
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
N ++FK+ + ++CTDLA+RGLD + HV+ +DFP+ + DYLHR GRT R G KG
Sbjct: 374 NFDRFKSRESK--IMICTDLASRGLDFPFLTHVVNYDFPITTSDYLHRAGRTGRAGRKGS 431
Query: 299 VTSLVAKKD 307
V SL KD
Sbjct: 432 VISLYHNKD 440
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 180/323 (55%), Gaps = 20/323 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+H+ A + P R A+VL PTREL++QV K+ + H RST+V GG ++PQ
Sbjct: 85 MLKHENASMSPARHPVR--ALVLAPTRELADQVAANVKAYAKHTNLRSTVVFGGIDMKPQ 142
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L +++++ TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 143 TAELKAGVEVLIATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 202
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ QT+L SAT + +++L + Q + + + + F ++
Sbjct: 203 RQR--------QTLLFSATFSPEIKRLANSYLQDPVLVEVARPNATATNVEQRFYSVT-D 253
Query: 181 ENKLEALLQVLEP-SLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
++K ++Q+L SLS+ +VF N+ L ++R F + + T HG+ ER+
Sbjct: 254 DDKRRVVMQLLRNRSLSQA---IVFVNSKLGAARLARSF-ERDGLKTSALHGDKSQDERL 309
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
++L+ FK GD LV TD+AARGLD+ D+ V FD P N+ DY+HR GRT R GA G
Sbjct: 310 KSLDAFKR--GDVELLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASG 367
Query: 298 KVTSLVAKKDVLLADRIEEAIRK 320
+LV + D L IE+ ++K
Sbjct: 368 LAVTLVTRDDARLISDIEKLLKK 390
>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
[Saccoglossus kowalevskii]
Length = 543
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 175/311 (56%), Gaps = 9/311 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA+VL P REL+EQV VA+ +S + +V GG R + + ++P+D++V TPG
Sbjct: 209 PRALVLLPARELAEQVLAVARRLSKFTELSANIVEGGRRHKTLHSTSDSPLDLMVATPGA 268
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L+ + G + +++Y+V+DE DTM D F L + R S N + Q +++
Sbjct: 269 LLKCVTSGWIHMDNVRYVVIDEIDTMLDDSFRTMTLNLLKRISIRHSADNTENAQVIMIG 328
Query: 138 ATMTKAVQKLVDE--ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
ATM K ++++D E + ++T+ LH + FI++ S++K L++++ +
Sbjct: 329 ATMPKNAEEMLDNVVEDGSLVTVKTTHLHHLMPHIPQKFIRIH-SKDKAGKTLELVKRDV 387
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
V+VFCN ++S + FL EN +S + +G + +ER +F + G LV
Sbjct: 388 KCKIPVVVFCNKIDSCNWLYQFLKENNVSALKLNGGMNHKERYGLFQQF--QKGIQNVLV 445
Query: 256 CTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GKVTSLVAKK-DVLLA 311
CTD+ +RGLD + HVI FDFP DY+HR GR R+G++ G VTSL+ K DV L
Sbjct: 446 CTDIGSRGLDTIRAQHVINFDFPHGMSDYIHRAGRVGRVGSQTSGHVTSLIVHKWDVDLV 505
Query: 312 DRIEEAIRKNE 322
+IE ++R E
Sbjct: 506 HKIERSVRMRE 516
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 170/322 (52%), Gaps = 20/322 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+H+ A P R A+VL PTREL+ QV K + H RS +V GG ++PQ
Sbjct: 65 MLKHENASTSPARHPVR--ALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L Q + + + ++ F + G
Sbjct: 183 KQRI---------TLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSV-G 232
Query: 180 SENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
+++K AL Q+L+ +G K VF N+ + L + T HG+ ER+
Sbjct: 233 ADDKRRALHQILK---ERGMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERL 289
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L+ FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 290 KALDAFKK--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 298 KVTSLVAKKDVLLADRIEEAIR 319
S VA D L IE+ I+
Sbjct: 348 LAVSFVASSDQRLVADIEKLIK 369
>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 486
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLRH+ + P R A+VL PTREL++QV R + H + RST+V GG ++PQ
Sbjct: 65 LLRHESSSASPARHPVR--ALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ T+L SAT + +++L + + + A+ F +
Sbjct: 183 KERT--------TLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYS-AND 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ QVL ++G + +F N+ + L + T HG+ ER++
Sbjct: 234 DDKRRAIHQVLR---TRGLKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ GD LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALQAFKS--GDVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ I K
Sbjct: 349 AVTLVSGSDARLVADIEKLIGKK 371
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 175/323 (54%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHESSSTSPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQRFYS-AND 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ QVL+ ++G + +F N+ + L + T HG+ ER++
Sbjct: 234 DDKRRAIHQVLK---TRGLKQAFIFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKS--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ I+K
Sbjct: 349 AVTLVSGSDARLVADIEKLIKKK 371
>gi|395003518|ref|ZP_10387653.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394318531|gb|EJE54950.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 499
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P RA+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHESSSTSPARHP--VRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQNPITIEVARPNETASTVEQRFYS-AND 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ QVL+ ++G + +F N+ + L + T HG+ ER++
Sbjct: 234 DDKRRAIHQVLK---TRGLKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKK--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ I+K
Sbjct: 349 AVTLVSGSDARLVADIEKLIKKK 371
>gi|407940452|ref|YP_006856093.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407898246|gb|AFU47455.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
Length = 490
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 173/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + H + RST+V GG ++PQ
Sbjct: 65 LLKHENSSTSPARHPVR--ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQNPITIEVARPNETASTVEQRFYS-AND 233
Query: 181 ENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL+ ++G K +F N+ + L + T HG+ ER++
Sbjct: 234 DDKRRAIHHVLK---TRGIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKK--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ I+K
Sbjct: 349 AVTLVSGSDARLVADIEKLIKKK 371
>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 484
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHENSSASPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F + G
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDG- 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL +G + +F N+ + L + + T HG+ ER++
Sbjct: 234 DDKRRAIRHVLN---ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L+ FK+ G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 291 ALDAFKS--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+L A D L IE+ I+K
Sbjct: 349 AVTLAASSDTRLVADIEKLIKKK 371
>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
Length = 506
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 169/320 (52%), Gaps = 16/320 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ A P R A+VL PTREL++QV + K + + RS +V GG ++PQ
Sbjct: 80 LLKHENASTSPARHPVR--ALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQ 137
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 138 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLP 197
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + + + F + G
Sbjct: 198 KQRT--------TLLFSATFSPEIKRLASSYLQNPITIEVARSNATATTVEQHFYSV-GE 248
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
++K AL QVL K + VF N+ + L + + T HG+ ER++
Sbjct: 249 DDKRHALRQVLRDKNLK--QAFVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKA 306
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L+ FK G+ LVCTD+AARGLD+ DV V D P N+ DY+HR GRT R GA G
Sbjct: 307 LDAFKK--GEVDLLVCTDVAARGLDIKDVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVA 364
Query: 300 TSLVAKKDVLLADRIEEAIR 319
S V+ +DV IE+ I+
Sbjct: 365 VSFVSPRDVKSVAEIEKLIK 384
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 174/322 (54%), Gaps = 18/322 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ A P R A+VL PTREL++QV K + + + RST+V GG ++PQ
Sbjct: 65 LLKHENASTSPARHPVR--ALVLLPTRELADQVAEQVKLYAKYTQLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L + Q + + + ++ F ++
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLANSYLQDPITVEVARSNATASTVEQHFYRVD-D 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K L Q+L +G + VF N+ + L + ++T HG+ ER++
Sbjct: 234 DDKRGTLRQILR---DRGLKQAFVFVNSKLGCARLARSLERDGLNTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L+ FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALDAFKQ--GNVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRK 320
S V+ +D L +E+ + K
Sbjct: 349 AVSFVSGRDARLVGELEKLLGK 370
>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 484
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 173/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHENSSASPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F + G
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDG- 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL +G + +F N+ + L + + T HG+ ER++
Sbjct: 234 DDKRRAIRHVLN---ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKS--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+L A D L IE+ I+K
Sbjct: 349 AVTLAASSDTRLVADIEKLIKKK 371
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 172/306 (56%), Gaps = 18/306 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL++QV K+ S H + R+T+V GG ++PQ L +++++ TPGR+
Sbjct: 97 RALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTAELKRGVEVLIATPGRL 156
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L HIE N ++Y+VLDEAD M D GF PD+++ L L K+R QT+L S
Sbjct: 157 LDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSR---------QTLLFS 207
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + ++KL + Q + T+ + ++ F ++ ++K A+ Q+L
Sbjct: 208 ATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFYRVE-DDDKRNAVKQLLRTRAI- 265
Query: 198 GNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +VF N+ L ++R F + + T HG+ ER++ L FK G+ LV
Sbjct: 266 -TQSIVFVNSKLGAARLARAF-ERDGLRTQALHGDKSQDERLKALAAFKA--GEVDLLVA 321
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ D+ V FD P N+ DY+HR GRT R GA G +LV++ D L IE
Sbjct: 322 TDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDARLVSDIE 381
Query: 316 EAIRKN 321
+ I+K
Sbjct: 382 KLIKKK 387
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 164/304 (53%), Gaps = 18/304 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV + + + + RST+V GG ++PQ L ++++V TPGR+
Sbjct: 81 RALVLLPTRELAVQVAQQVELYAKYTNLRSTVVFGGMDMKPQTAELKKGVEVLVATPGRL 140
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L HIE N V ++Y+VLDEAD M D GF PD+++ L L K R T+L S
Sbjct: 141 LDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRI---------TLLFS 191
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + +++L Q + + + ++ F + G+++K AL Q+L+ +
Sbjct: 192 ATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSV-GADDKRRALHQILK---ER 247
Query: 198 GNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G K VF N+ + L + T HG+ ER++ L FK G+ LVC
Sbjct: 248 GMKQAFVFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALEAFKK--GEVDLLVC 305
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G S VA D L IE
Sbjct: 306 TDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDNRLVADIE 365
Query: 316 EAIR 319
+ I+
Sbjct: 366 KLIK 369
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 22/325 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+LRH+ + P R A+VL PTREL++QV K+ + H R RS +V GG ++PQ
Sbjct: 79 MLRHENTSMSPARHPVR--ALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQ 136
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L +++++ TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 137 TAELKAGVEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLP 196
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R QT+L SAT + +++L Q + + + ++ F + G
Sbjct: 197 KTR---------QTLLFSATFSPEIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGV-G 246
Query: 180 SENKLEALLQVL-EPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQER 237
++K + Q+L + LS+ +VF N+ L ++R F + + T HG+ ER
Sbjct: 247 DDDKRATVRQILRQRELSQA---IVFVNSKLGAARLARSF-ERDGLKTQALHGDKSQDER 302
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
++ L FK G+ LV TD+AARGLD+ D+ V FD P N+ DY+HR GRT R GA
Sbjct: 303 LKALAAFKA--GEVDLLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGAS 360
Query: 297 GKVTSLVAKKDVLLADRIEEAIRKN 321
G +LV + D L IE+ I+K
Sbjct: 361 GLAVTLVTRDDTRLIGDIEKLIKKK 385
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHESSSTSPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYS-AND 233
Query: 181 ENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ QVL+ S+G K +F N+ + L + T HG+ ER++
Sbjct: 234 DDKRHAIHQVLK---SRGIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L+ FK G LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALDAFKQ--GAVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ ++K
Sbjct: 349 AVTLVSGSDARLVADIEKLLKKK 371
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 169/305 (55%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QVF K+ S + R+T + GG ++PQ L N +++VV TPGR+
Sbjct: 79 RALILAPTRELAMQVFESVKTYSKYVPLRTTCIYGGVDMKPQIQELRNGVEIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ +V ++ LVLDEAD M D GF PDIR+ L L AS+ Q++L SA
Sbjct: 139 LDHVQQKTIVLNQVEMLVLDEADRMLDMGFIPDIRRILDLLP--ASR------QSLLFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL D+ E Q I R +T+ + I H +G + L L EP
Sbjct: 191 TFSDEIKKLADQMLKEPQLIEVARRNTVSETITHVVHPVS--AGLKRNLLVHLLRHEPD- 247
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VF T + + HFL + I+ HG+ +R E L FK+ G LV
Sbjct: 248 ---TQALVFVATKLACGRLAHFLERHDIAADAIHGDKGQSQRTEALEAFKS--GKLRVLV 302
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ VI F+ P + DY+HR GRT R G KG+ SLV+ ++ L I
Sbjct: 303 ATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRKGRAVSLVSSEEKHLLADI 362
Query: 315 EEAIR 319
E+ I+
Sbjct: 363 EKLIK 367
>gi|383759970|ref|YP_005438956.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381380640|dbj|BAL97457.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 485
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 20/324 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+LRH+ + P R A+VL PTREL++QV K+ + H R RS +V GG ++PQ
Sbjct: 88 MLRHENTSMSPARHPVR--ALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQ 145
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L +++++ TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 146 TLELKAGVEVLIATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL- 204
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
P + QT+L SAT + +++L Q + + + ++ F +S
Sbjct: 205 -----PKAR--QTLLFSATFSPEIKRLAGSYLQEPVTVEVARPNATASTVEQRFYGVS-D 256
Query: 181 ENKLEALLQVL-EPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
++K + Q+L + LS+ +VF N+ L ++R F + + T HG+ ER+
Sbjct: 257 DDKRATVRQILRQRELSQA---IVFVNSKLGAARLARSF-ERDGLKTQALHGDKSQDERL 312
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L FK G+ LV TD+AARGLD+ D+ V FD P N+ DY+HR GRT R GA G
Sbjct: 313 KALAAFKA--GEVDLLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASG 370
Query: 298 KVTSLVAKKDVLLADRIEEAIRKN 321
+L+ + D L IE+ I+K
Sbjct: 371 LAVTLITRDDTRLVSDIEKLIKKK 394
>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 480
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHENSSASPARHPVR--ALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TAELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSVQ-D 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL +G + +F N+ + L + + T HG+ ER++
Sbjct: 234 DDKRRAIRHVLT---ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ GD LVCTD+AARGLD+ DV V D P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKS--GDVDLLVCTDVAARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D L IE+ I+K
Sbjct: 349 AVTLVGSGDARLVADIEKLIKKK 371
>gi|398811913|ref|ZP_10570698.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398079456|gb|EJL70309.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 487
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 19/324 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+H+ A P R A+VL PTREL++QV + K + + RST+V GG ++PQ
Sbjct: 65 MLKHENASTSPARHPVR--ALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F + G
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLASSYLQNPVTIEVARPNETASTVEQHFYSV-GD 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K AL Q+++ +G + VF N+ + L + + T HG+ ER++
Sbjct: 234 DDKRRALKQIVK---QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALAAFKA--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVA-KKDVLLADRIEEAIRKN 321
S + D L IE+ I+K
Sbjct: 349 AVSFASGGNDARLVADIEKLIKKK 372
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 168/321 (52%), Gaps = 18/321 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+++H+ A P R A+VL PTREL+ QV K + + S +V GG ++PQ
Sbjct: 65 MMKHENASTSPARHPVR--ALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L Q + + + A+ F + G
Sbjct: 183 KQRI---------TLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSV-G 232
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
+++K AL Q+L+ K + VF N+ + L + T HG+ ER++
Sbjct: 233 ADDKRRALHQILKARDLK--QAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALESFKS--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIR 319
S VA D L IE+ I+
Sbjct: 349 AVSFVAASDQRLVTDIEKLIK 369
>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 496
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 173/323 (53%), Gaps = 19/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+H+ A P R A+VL PTREL++QV + K + + RST+V GG ++PQ
Sbjct: 65 MLKHENASTSPARHPVR--ALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F +S
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVS-D 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K AL Q+++ +G + VF N+ + L + + T HG+ ER++
Sbjct: 234 DDKRRALKQIVK---QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALASFKA--GEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVA-KKDVLLADRIEEAIRK 320
S + D L IE+ I+K
Sbjct: 349 AVSFASGGNDARLVADIEKLIKK 371
>gi|328772544|gb|EGF82582.1| hypothetical protein BATDEDRAFT_23188 [Batrachochytrium
dendrobatidis JAM81]
Length = 738
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 180/357 (50%), Gaps = 42/357 (11%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
A L ++ K RRPRA+++ P+R+L QV AK +SH A+ R + + +E +L++
Sbjct: 380 AGLALIRKIRRPRAIIIVPSRDLVAQVTATAKILSHKAKLRVVGMHSRSDYKAREFALSS 439
Query: 67 -PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
PID+++ TPG + E ++V +V+DEADT+FD F D++ + +K SK
Sbjct: 440 APIDILICTPGMLTSFTESKDIVLTQTSLIVVDEADTLFDTNFQDDLKPIIQSVKT-FSK 498
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
G+ + + +AT+ K + V +E + + T LH+ A F++L S K
Sbjct: 499 NQGRTCRFLFTTATLPKTLNLAVLDEFPELRRVFTPNLHRTQAKLHQSFLRLDSSTTKPN 558
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF- 244
LL+VL ++ + +++++FCN ++ V L V + R ++L +F
Sbjct: 559 MLLEVLRRAVLETDRIIIFCNRRSTCNTVSDHLRSKSYDVVTLTSSAEIKNRTKSLEQFL 618
Query: 245 ----------------KNED----------------------GDCPTLVCTDLAARGLDL 266
NED G +V TD+A+RGLD
Sbjct: 619 NPELIKEPFEKLEAMYGNEDEKHVVSPSVVEMQVEGLSKPPLGKPMIMVATDIASRGLDT 678
Query: 267 D-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322
V HVI++DFP +IDYLHR GRTAR G G+ TS++A +D LA+ I +A++K +
Sbjct: 679 TPVGHVILYDFPQTAIDYLHRVGRTARNGRSGRATSIIAHRDASLAEFISKAVKKRD 735
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 170/323 (52%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+RH+ P RA+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LMRHENTSASPARHP--VRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L Q + + ++ ++ F +S
Sbjct: 183 KTRT---------TLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVS- 232
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K AL +L+ + + VF N+ + L + + HG+ ER++
Sbjct: 233 DDDKRYALRSLLKQRDIR--QAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKR--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGI 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D L IE+ I+K
Sbjct: 349 AVTLVTNHDARLVGEIEKLIKKK 371
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 170/323 (52%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+RH+ P RA+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LMRHENTSASPARHP--VRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L Q + + ++ ++ F +S
Sbjct: 183 KTRT---------TLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVS- 232
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K AL +L+ + + VF N+ + L + + HG+ ER++
Sbjct: 233 DDDKRYALRSLLKQRDIR--QAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKR--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGI 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D L IE+ I+K
Sbjct: 349 AVTLVTNHDARLVGEIEKLIKKK 371
>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 489
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 172/324 (53%), Gaps = 20/324 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHENSSTSPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L Q + + ++ ++ F ++
Sbjct: 183 KTRT---------TLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVN- 232
Query: 180 SENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
++K A+ VL ++G K VF N+ + L + HG+ ER+
Sbjct: 233 DDDKRRAIHHVLR---TRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERL 289
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L+ FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 290 KALDAFKR--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 298 KVTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ +K
Sbjct: 348 LAVTLVSSSDARLVADIEKLTKKK 371
>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 491
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 172/324 (53%), Gaps = 20/324 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + + + + RST+V GG ++PQ
Sbjct: 65 LLKHENSSTSPARHPVR--ALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L Q + + ++ ++ F ++
Sbjct: 183 KTRT---------TLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVN- 232
Query: 180 SENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
++K A+ VL ++G K VF N+ + L + HG+ ER+
Sbjct: 233 DDDKRRAIHHVLR---TRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERL 289
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L+ FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 290 KALDAFKR--GEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASG 347
Query: 298 KVTSLVAKKDVLLADRIEEAIRKN 321
+LV+ D L IE+ +K
Sbjct: 348 LAVTLVSSSDARLVADIEKLTKKK 371
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 173/323 (53%), Gaps = 20/323 (6%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+LRH+ A P R A+VL PTREL++QV K+ + H++ R T V GG + PQ
Sbjct: 77 MLRHENASASPARHPVR--ALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMAPQ 134
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L +++++ TPGR+L HI+ N ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 135 TAELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 194
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R QT+L SAT + ++KL Q + + + + F ++
Sbjct: 195 KTR---------QTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTD 245
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
+ + L + E S+++ +VF N+ L ++R F + + T HG+ ER+
Sbjct: 246 DDKRRTVLHILRERSITQA---IVFVNSKLGAARLARSF-ERDGLRTSALHGDKSQDERL 301
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L+ FK G+ LV TD+AARGLD+ D+ V FD P N+ DY+HR GRT R GA G
Sbjct: 302 KALDAFKR--GEVDVLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASG 359
Query: 298 KVTSLVAKKDVLLADRIEEAIRK 320
SLV+ D L IE+ I+K
Sbjct: 360 LAVSLVSHDDNRLVSDIEQLIKK 382
>gi|406973607|gb|EKD96982.1| hypothetical protein ACD_23C01154G0002, partial [uncultured
bacterium]
Length = 475
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 168/321 (52%), Gaps = 18/321 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+H+ A P R A+VL PTREL+ QV + + RS +V GG ++PQ
Sbjct: 63 MLKHENASTSPARHPVR--ALVLLPTRELAVQVAEQVELYGKYTNLRSAVVFGGMDMKPQ 120
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 121 TIELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 180
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + + ++ F + G
Sbjct: 181 KQRT--------TLLFSATFSPEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVEG- 231
Query: 181 ENKLEALLQVLEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
E+K AL Q+L +G K VF N+ + L + T HG+ ER++
Sbjct: 232 EDKRHALHQILR---QRGIKQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLK 288
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ G LVCTD+AARGLD+ DV V FD P ++ DY+HR GRT R GA+G
Sbjct: 289 ALESFKS--GGVDLLVCTDVAARGLDIKDVPAVFNFDIPFHAEDYVHRIGRTGRAGAEGL 346
Query: 299 VTSLVAKKDVLLADRIEEAIR 319
+ V+K D L IE+ ++
Sbjct: 347 AVTFVSKSDQRLVTDIEKLLK 367
>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 486
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 173/323 (53%), Gaps = 19/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+L+H+ A P R A+VL PTREL++QV + K + + RST+V GG ++PQ
Sbjct: 65 MLKHENASTSPARHPVR--ALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L Q + + ++ ++ F ++
Sbjct: 183 KQRT--------TLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVT-D 233
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K AL Q+++ +G + VF N+ + L + + T HG+ ER++
Sbjct: 234 DDKRRALKQIVK---QRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 291 ALASFKA--GEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVA-KKDVLLADRIEEAIRK 320
S + D L IE+ I+K
Sbjct: 349 AVSFASGGNDARLVADIEKLIKK 371
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 173/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+RH+ A P R A+VL PTREL++QV + + H + RST+V GG ++PQ
Sbjct: 65 LMRHENASASPARHPVR--ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N+V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K+R T+L SAT + +++L Q + + ++ ++ F K++
Sbjct: 183 KSRT---------TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVT- 232
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL+ + + +F N+ + L + + HG+ ER++
Sbjct: 233 DDDKRYAIRSVLKERDIR--QAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKA--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D IE+ I+K
Sbjct: 349 AVTLVTDHDSRNVADIEKLIKKK 371
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QVF K+ S + RST + GG ++PQ L N I++VV TPGR+
Sbjct: 79 RALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQIQDLRNGIEIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + G ++ LVLDEAD M D GF PDIR+ L L P + Q++L SA
Sbjct: 139 LDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLL------PAAR--QSLLFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL D+ E Q I R + + + I H +G + L A L EP
Sbjct: 191 TFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVS--AGLKRNLLAHLLRHEPD- 247
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VF T + + HFL + I+ HG+ +R + L FK+ G LV
Sbjct: 248 ---TQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKS--GKLRVLV 302
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ VI F+ P + DY+HR GRT R G +G SLV+ ++ I
Sbjct: 303 ATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEERHHLAEI 362
Query: 315 EEAIR 319
E+ I+
Sbjct: 363 EKLIK 367
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 173/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+RH+ A P R A+VL PTREL++QV + + H + RST+V GG ++PQ
Sbjct: 65 LMRHENASASPARHPVR--ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 122
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N+V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K+R T+L SAT + +++L Q + + ++ ++ F K+S
Sbjct: 183 KSRT---------TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVS- 232
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL+ + + +F N+ + L + + HG+ ER++
Sbjct: 233 DDDKRYAIRSVLKERDIR--QAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLK 290
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 291 ALEAFKA--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGL 348
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D IE+ I+K
Sbjct: 349 AVTLVTDHDSRNVADIEKLIKKK 371
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 165/312 (52%), Gaps = 20/312 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP RPR ++L PTREL+ QV K+ + + R RS ++ GG + PQ +L P+D++V
Sbjct: 84 KPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQALRQPVDILVA 143
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L H++ G + ++ VLDEAD M D GF DIR+ + L + Q
Sbjct: 144 TPGRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKR--------QN 195
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTS---TLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SAT + ++ L A + + T + +A + H K + ALL
Sbjct: 196 LLFSATFSPEIRSLAHGLLDNPAEVDVAPRNTASELVAQSAHLVPK-----TRKRALLSY 250
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L S + +V+VF T + + + L ++ I + HG R L++FK DG
Sbjct: 251 LIGS-RRWKQVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFK--DGS 307
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
P LV TD+AARGLD+D + HV+ ++ P DY+HR GRT R G +G SLV ++++
Sbjct: 308 LPVLVATDIAARGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMK 367
Query: 310 LADRIEEAIRKN 321
L IE I++
Sbjct: 368 LLTGIERLIKRQ 379
>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
Length = 512
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 154/287 (53%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T V GG R Q L +++V+ TPGR
Sbjct: 154 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 213
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 214 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 265
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL ++ + +L SA H+ +++ ENKL LLQ +
Sbjct: 266 ATWPKEVKKLAEDYLGDYIQINIGSLQ---LSANHNILQIVDICQEHEKENKLNVLLQEI 322
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G K ++F T + + + V HG+ QER E L +FK +G
Sbjct: 323 GQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFK--EGRA 380
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
LV TD+AARGLD+D + +VI FD+P +S DY+HR GRT R +KG
Sbjct: 381 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 427
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 164/305 (53%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QVF K+ S H RS V GG +RPQ+ L I++V+ TPGR+
Sbjct: 79 RALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQAELRRGIEIVIATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E ++ ++ LVLDEAD M D GF PDI++ L L + Q++L SA
Sbjct: 139 LDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLPKQR--------QSLLFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + +++L D+ E Q I R + + + I H SG + L A L +P
Sbjct: 191 TFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVS--SGMKRNLLAHLLRHKPD- 247
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VF +T + H+L + IS HG+ Q+R + L FK+ G LV
Sbjct: 248 ---TQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKS--GKLRVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+D + VI F+ P + DY+HR GRT R G G SLV+ ++ I
Sbjct: 303 ATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLSEI 362
Query: 315 EEAIR 319
E+ I+
Sbjct: 363 EKLIK 367
>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
Length = 539
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 154/287 (53%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T V GG R Q L +++V+ TPGR
Sbjct: 181 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 292
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL ++ + +L SA H+ +++ ENKL LLQ +
Sbjct: 293 ATWPKEVKKLAEDYLGDYIQINIGSLQ---LSANHNILQIVDICQEHEKENKLNVLLQEI 349
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G K ++F T + + + V HG+ QER E L +FK +G
Sbjct: 350 GQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFK--EGRA 407
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
LV TD+AARGLD+D + +VI FD+P +S DY+HR GRT R +KG
Sbjct: 408 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 454
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 169/304 (55%), Gaps = 16/304 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ S H RST+V GG + PQ D+L +++++ TPGR+
Sbjct: 95 RALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQSDALRRGVEILIATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + G ++ LVLDEAD M D GF PD+++ L L QT+L SA
Sbjct: 155 LDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKEC--------QTLLFSA 206
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++KL + + + + A+ R ++ S +K A+ Q++ K
Sbjct: 207 TFSAEIKKLASTYLRNPQTIEVARSNSTNANVRQIVYEVHES-DKSGAVAQLIRE--RKL 263
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VFCN+ + + L + I HG+ ER++ L+ FK G+ LV TD
Sbjct: 264 KQVIVFCNSKIGASRLARVLERDGIVATAIHGDRTQSERMQALDAFKR--GEIEALVATD 321
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLADRIEE 316
+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL A + LAD IE+
Sbjct: 322 VAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSANERKQLAD-IEK 380
Query: 317 AIRK 320
I++
Sbjct: 381 LIKR 384
>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 453
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 172/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+RH+ A P R A+VL PTREL++QV + + H + RST+V GG ++PQ
Sbjct: 45 LMRHENASASPARHPVR--ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 102
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N+V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 103 TIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 162
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K+R T+L SAT + +++L Q + + ++ ++ F K++
Sbjct: 163 KSRT---------TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVT- 212
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL+ + + +F N+ + L + + HG+ ER++
Sbjct: 213 DDDKRYAIRSVLKERDIR--QAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLK 270
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 271 ALEAFKA--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGL 328
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D IE+ +K
Sbjct: 329 AVTLVTDHDSRNVADIEKLTKKK 351
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 172/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+RH+ A P R A+VL PTREL++QV + + H + RST+V GG ++PQ
Sbjct: 56 LMRHENASASPARHPVR--ALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 113
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N+V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 114 TIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 173
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K+R T+L SAT + +++L Q + + ++ ++ F K++
Sbjct: 174 KSRT---------TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVT- 223
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K A+ VL+ + + +F N+ + L + + HG+ ER++
Sbjct: 224 DDDKRYAIRSVLKERDIR--QAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLK 281
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V +D P N+ DY+HR GRT R GA G
Sbjct: 282 ALEAFKA--GEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGL 339
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+LV D IE+ +K
Sbjct: 340 AVTLVTDHDSRNVADIEKLTKKK 362
>gi|424881770|ref|ZP_18305402.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518133|gb|EIW42865.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 520
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 159/318 (50%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 66 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 125
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 126 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 185
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + A+ F+ G +
Sbjct: 186 ----------QTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKD 235
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ +VFCN + L + S HG++ + R L
Sbjct: 236 YEKRAVLRELVRAQTELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 295
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 296 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 353
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 354 TLVTKRDTKFVDAIEKLI 371
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 18/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ S H RST+V GG + PQ D+L +++++ TPGR+
Sbjct: 95 RALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQSDALRRGVEILIATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ + G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 155 LDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 205
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + ++KL + + + + + R ++ S +K A+ Q++ K
Sbjct: 206 ATFSPEIKKLASTYLRNPQTIEVARSNSTATNVRQIVFEVHES-DKSGAVAQLIRERELK 264
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V+VFCN+ + + L ++ I HG+ ER++ L+ FK G+ LV T
Sbjct: 265 --QVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQSERMQALDAFKR--GEIEALVAT 320
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLADRIE 315
D+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL A + LAD IE
Sbjct: 321 DVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSANERKQLAD-IE 379
Query: 316 EAIRK 320
+ I++
Sbjct: 380 KLIKR 384
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 172/305 (56%), Gaps = 18/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ S H RST+V GG + PQ D+L +++++ TPGR+
Sbjct: 95 RALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQSDALRRGVEILIATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ + G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 155 LDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 205
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + ++KL + + + + A+ R ++ S +K A+ Q++ K
Sbjct: 206 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVRQIVYEVHES-DKSGAVAQLIRERELK 264
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V+VFCN+ + + L ++ I HG+ ER++ L+ FK G+ LV T
Sbjct: 265 --QVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQSERMQALDAFKR--GEIEALVAT 320
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLADRIE 315
D+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL A + LAD IE
Sbjct: 321 DVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSANERKQLAD-IE 379
Query: 316 EAIRK 320
+ I++
Sbjct: 380 KLIKR 384
>gi|345864532|ref|ZP_08816732.1| ATP-dependent RNA helicase RhlB [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124391|gb|EGW54271.1| ATP-dependent RNA helicase RhlB [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 451
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 160/293 (54%), Gaps = 12/293 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P +PRA++L PTREL+ Q+ + A+++ H F + V GG Q + L +D++VG
Sbjct: 76 RPNQPRALMLAPTRELAVQIHKDAEALCKHTDFTTAAVYGGTGYEQQRNQLQQGVDILVG 135
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ + + +I+ +VLDEAD MFD GF DIR L R P +
Sbjct: 136 TPGRLIDYFKQHVYNLNEIQVVVLDEADRMFDLGFIKDIRYLL----RRCPGPTRR--LG 189
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ VQ+L E H+ R + + +E K+ L+ +L
Sbjct: 190 MLFSATLSYRVQELAYEHMNNPQHVEVQPEQVTAEKVR-EIGYMVANEEKIPLLIGLLR- 247
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++ +VF NT + V FL NQI T G+VP ++R+ LNKF++ G+
Sbjct: 248 -RQEASRTIVFVNTKRVADKVWGFLQGNQIDTAVLSGDVPQKKRLNLLNKFQS--GELSV 304
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARGL + DV HV+ +D P ++ DY+HR GRTAR GA G S +
Sbjct: 305 LVATDVAARGLHIPDVTHVVNYDLPEDAEDYVHRIGRTARAGASGDAISFACE 357
>gi|78042906|ref|YP_359101.1| DEAD/DEAH box helicase [Carboxydothermus hydrogenoformans Z-2901]
gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 430
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 14/310 (4%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+ + ++ + +++ PTREL+ QV + + + R+ V GG + Q L ++++
Sbjct: 64 IQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVI 123
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRIL HI +IK ++LDEAD M D GF DI L L NR
Sbjct: 124 VGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ-------- 175
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+L SAT+ ++ ++ + G ++ K + + R + +L +E K+E L+ +L
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSIL 234
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L + +VFC T V LN + HG++ +ER + + FK G
Sbjct: 235 NSELP--IQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKA--GKT 290
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ DV HVI FD P N Y+HR GRT R G +GK +L+ ++ L
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 311 ADRIEEAIRK 320
IEEAI K
Sbjct: 351 LKAIEEAINK 360
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 172/323 (53%), Gaps = 18/323 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H+ + P R A+VL PTREL++QV + K + + RS +V GG ++PQ
Sbjct: 72 LLKHENSSTSPARHPVR--ALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ 129
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
L ++++V TPGR+L HIE N V G ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 130 TLELKRGVEVLVATPGRLLDHIEAKNAVLGQVEYVVLDEADRMLDIGFLPDLQRILSYLP 189
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+ + T+L SAT + +++L + + + + ++ ++ F ++
Sbjct: 190 KQRT--------TLLFSATFSPEIKRLANSYLKDPVTIEVARPNETASTVEQHFYSVT-D 240
Query: 181 ENKLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K AL Q++ +G + VF N+ + L + T HG+ ER++
Sbjct: 241 DDKRRALKQIVR---QRGITQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLK 297
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LV TD+AARGLD+ DV V FD P N+ DY+HR GRT R GA G
Sbjct: 298 ALAAFKA--GEVDLLVATDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGL 355
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
+ V+ D L +E+ ++K
Sbjct: 356 AVTFVSGSDGRLVADLEKLLKKK 378
>gi|345879568|ref|ZP_08831198.1| glycolate oxidase subunit glcD [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344223415|gb|EGV49888.1| glycolate oxidase subunit glcD [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 500
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 160/293 (54%), Gaps = 12/293 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P +PRA++L PTREL+ Q+ + A+++ H F + V GG Q + L +D++VG
Sbjct: 125 RPNQPRALMLAPTRELAVQIHKDAEALCKHTDFTTAAVYGGTGYEQQRNQLQQGVDILVG 184
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ + + +I+ +VLDEAD MFD GF DIR L R P +
Sbjct: 185 TPGRLIDYFKQHVYNLNEIQVVVLDEADRMFDLGFIKDIRYLL----RRCPGPTRR--LG 238
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ VQ+L E H+ R + + +E K+ L+ +L
Sbjct: 239 MLFSATLSYRVQELAYEHMNNPQHVEVQPEQVTAEKVR-EIGYMVANEEKIPLLIGLLR- 296
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++ +VF NT + V FL NQI T G+VP ++R+ LNKF++ G+
Sbjct: 297 -RQEASRTIVFVNTKRVADKVWGFLQGNQIDTAVLSGDVPQKKRLNLLNKFQS--GELSV 353
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARGL + DV HV+ +D P ++ DY+HR GRTAR GA G S +
Sbjct: 354 LVATDVAARGLHIPDVTHVVNYDLPEDAEDYVHRIGRTARAGASGDAISFACE 406
>gi|116252340|ref|YP_768178.1| cold-shock DEAD-box protein A [Rhizobium leguminosarum bv. viciae
3841]
gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 521
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 159/318 (50%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 66 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 125
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 126 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 185
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + A+ F+ G +
Sbjct: 186 ----------QTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKD 235
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 236 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 295
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 296 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 353
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 354 TLVTKRDTKFVDAIEKLI 371
>gi|424870828|ref|ZP_18294490.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393166529|gb|EJC66576.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 521
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 159/318 (50%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 66 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 125
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 126 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 185
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + A+ F+ G +
Sbjct: 186 ----------QTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKD 235
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 236 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 295
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 296 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 353
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 354 TLVTKRDTKFVDAIEKLI 371
>gi|357418532|ref|YP_004931552.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355336110|gb|AER57511.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 456
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 161/302 (53%), Gaps = 23/302 (7%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PRRPRA+VL PTREL+ QV + S + R S + GG + PQ D+L +D+V+
Sbjct: 74 PRRPRALVLTPTRELATQVHESLRDYSKYLRIPSATIYGGVGMGPQLDTLRRGVDLVIAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSVDLSGIEVLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTS---TLHKKIASARHDFIKLSGSENKLEALLQ 189
T+L SAT ++ L E ++ + T+H+ I H S K + LL
Sbjct: 185 TLLFSATFDDNIKLLAREFMHDPLEIQATPKNTVHENITHRVHPV----DSARKRDLLLH 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L + + +VF T + S + FL + I T HG +R+ L FK G
Sbjct: 241 LL--AEDSREQTLVFAKTKHGSDKLALFLEKAGIQTAAIHGNKSQSQRLRALRDFKA--G 296
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + VI FD P+ + DY+HR GRT R G+ G+ SLV+++D
Sbjct: 297 KVTVLVATDIAARGIDIDQLPKVINFDLPMVAEDYVHRIGRTGRNGSTGQAVSLVSQEDA 356
Query: 309 LL 310
L
Sbjct: 357 KL 358
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 169/322 (52%), Gaps = 19/322 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L++H+ A P R A+VL PTREL++QV + K + + RS +V GG ++PQ
Sbjct: 84 LMKHENASTSPARHPVR--ALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ 141
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
L ++++V TPGR+L HIE N V ++Y+VLDEAD M D GF PD+++ L L
Sbjct: 142 TLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 201
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K R T+L SAT + +++L + Q + + + ++ F +++
Sbjct: 202 KTRT---------TLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVN- 251
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++K ALLQ++ K + VF N+ + L + + HG+ ER++
Sbjct: 252 DDDKRHALLQIVRSKDIK--QAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLK 309
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK G+ LVCTD+AARGLD+ DV V D P N+ DY+HR GRT R GA G
Sbjct: 310 ALEAFKK--GEVDLLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGL 367
Query: 299 VTSLV-AKKDVLLADRIEEAIR 319
S V D L IE+ I+
Sbjct: 368 AVSFVGGGNDARLVADIEKLIK 389
>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
Length = 411
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 159/290 (54%), Gaps = 10/290 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+V+ PTREL++Q+++ A+ S R +V GG + Q ++ ++VVGTP
Sbjct: 41 KEPQAIVVAPTRELADQIYKEARKFSTGTDLRPVVVYGGVAVNHQLRQVDLGANLVVGTP 100
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L IE G + G +KYL+LDEAD M D GF P IRK + L P QT+L
Sbjct: 101 GRLLDFIERGKIGLGKVKYLILDEADRMLDMGFEPSIRKLVDGL----GMPPKSQRQTLL 156
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT +Q+L + + + + F+++ + K E L +L S
Sbjct: 157 FSATFKPDIQQLAADFMKDYLFITVGIVGGACTDVEQTFLEVDRVQ-KREYLCDILNTSG 215
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ N+V+VF ++ + +L+++ T HG+ +ER E L FK+ G P L+
Sbjct: 216 T--NRVLVFVGQKRNADFLASYLSQSGYPTTTIHGDRLQREREEALRDFKS--GKSPVLI 271
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
T++AARGLD+ DV HV+ +D P++ +Y+HR GRT R G GK TS +
Sbjct: 272 ATNVAARGLDIPDVTHVVNYDLPMDIDEYVHRIGRTGRCGNLGKATSFYS 321
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 174/318 (54%), Gaps = 28/318 (8%)
Query: 13 MKP-RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
M P R P RA+VL PTREL+ QV K+ + H R+T+V GG ++PQ + L +++
Sbjct: 110 MSPARHPVRALVLVPTRELAVQVADNVKAYARHTPLRATVVFGGMDMKPQTEILRRGVEI 169
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNG 128
V+ TPGR+L HIE N+ G ++ LV+DEAD M D GF PD+++ L+P K R
Sbjct: 170 VIATPGRLLDHIEQKNVSLGQVQMLVMDEADRMLDMGFLPDLQRIINLLP-KQR------ 222
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
Q ++ SAT + ++KL + I R++ +K+ + E K +
Sbjct: 223 ---QNLMFSATFSPEIKKLANTFLNNPLTIEVARSNATAEKVTQ----IVYKVDEEQKRD 275
Query: 186 ALLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+ ++ K +V++F NT + +SR H L + + HG+ QER+ L+ F
Sbjct: 276 VVEHLIRSRDMK--QVIIFSNTKIGASRLSSH-LEKRGVKASAIHGDKTQQERMAALDAF 332
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
KN G LV TD+AARGLD+ D+ VI +D P N+ DY+HR GRT R GA G S+
Sbjct: 333 KN--GSVEVLVATDVAARGLDISDLPAVINYDLPYNAEDYVHRIGRTGRAGASGDALSVY 390
Query: 304 AKKDVLLADRIEEAIRKN 321
+ KD L IE+ I++
Sbjct: 391 SDKDERLLADIEKLIKQT 408
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 169/313 (53%), Gaps = 22/313 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KPRR RA++L PTREL+ QV+ K+ H F + V GG + Q L D+VV
Sbjct: 72 KPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQLRRGCDIVVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR++ H++ N+ +++ LVLDEAD M D GF PDI++ L+P K
Sbjct: 132 TPGRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKKR---------- 181
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQ 189
Q++L SAT+ A++ L + + + K+ A+A + + + G E K E L
Sbjct: 182 QSLLFSATVPNAIKSLAAQLLNNPVEVEVA---KQNATAENVAERVYGIGREYKRELLSY 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ + K +V+VF T + + ++ L E+ I T HG+ R + L +FK G
Sbjct: 239 LIGSNNWK--QVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKT--G 294
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+ D+ HV+ FD P DY+HR GRT R GA G+ SLV ++
Sbjct: 295 KVSVLVATDIAARGLDIDDLPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEA 354
Query: 309 LLADRIEEAIRKN 321
+ IE+ +++
Sbjct: 355 WMLVEIEKLLKRQ 367
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 160/306 (52%), Gaps = 18/306 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+++CPTREL+ QV K+ S H RS+ + GG ++ Q L ++VV TPGR+
Sbjct: 79 RALIVCPTRELAMQVHESVKTYSKHLPLRSSCIYGGVDMKAQVAELREGREIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + G ++ LVLDEAD M D GF PDI++ L L + Q++L SA
Sbjct: 139 LDHVEGKTVNLGQVQMLVLDEADRMLDMGFIPDIKRILALLPTQR--------QSLLFSA 190
Query: 139 TMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T ++ ++KL + Q I R + + I H +++K L +L
Sbjct: 191 TFSEEIKKLAQAMLRDPQLIEVARRNATAETITHRVH----ACDTDDKRALLTHLLTQDS 246
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VF NT + + H L ++ HG+ Q+R E L FKN G LV
Sbjct: 247 YADRQALVFVNTKFGASRLAHHLVRQGVAADAIHGDKSQQQRTEALEAFKN--GSVRVLV 304
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ VI F+ P N+ DY+HR GRT R G G+ SL A ++ I
Sbjct: 305 ATDVAARGLDIEDLPFVINFELPHNAEDYVHRIGRTGRAGRSGEAISLAAPEEKGRVADI 364
Query: 315 EEAIRK 320
E+ IRK
Sbjct: 365 EKLIRK 370
>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 521
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 66 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 125
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 126 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 185
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ G +
Sbjct: 186 ----------QTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKD 235
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ +VFCN + L + S HG++ + R L
Sbjct: 236 YEKRAVLRELVRAQTELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 295
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 296 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 353
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 354 TLVTKRDTKFVDAIEKLI 371
>gi|380513114|ref|ZP_09856521.1| ATP-dependent RNA helicase, partial [Xanthomonas sacchari NCPPB
4393]
Length = 393
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 23/313 (7%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA+VL PTREL+ QV + S + R S + GG + Q D+L +D+++
Sbjct: 74 PRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLDALRRGVDLLIAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR+L H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPRQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
T+L SAT + +++L E + Q I ++T+ IA H + G+ + E LL
Sbjct: 185 TLLFSATFEEGIKQLAREFMRDPQEIQATPSNTVADTIA---HRVHPVDGARKR-ELLLH 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L K + +VF T + + + FL+++ I HG +R+ L FK G
Sbjct: 241 LLAADSRK--QTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKA--G 296
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R GA+G+ SLVA+ +
Sbjct: 297 RITVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEA 356
Query: 309 LLADRIEEAIRKN 321
L I ++++
Sbjct: 357 KLLRAIARLLKRD 369
>gi|402082038|gb|EJT77183.1| hypothetical protein GGTG_07095 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 685
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 7/291 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++L PTREL+ Q++ A+ ++ + R +V GG + Q + D++V TPGR
Sbjct: 279 PTSLILAPTRELASQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 338
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +IKYL+LDEAD M D GF P IR+ + PN QT++ S
Sbjct: 339 LVDLIERGRVSLCNIKYLILDEADRMLDMGFEPQIRRIV----EGEDMPNVNDRQTLMFS 394
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + +QKL + + L + + I++ G ++K L+ +LE
Sbjct: 395 ATFPEYIQKLARDFLKDYVFLSVGRVGSTSENITQRVIEVHGKDDKDSFLIDLLENDKET 454
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G +VF T ++ + +FL + HG+ +ER L F+ G CP LV T
Sbjct: 455 GGLTLVFVETKRNADELSYFLQNRNLPATAIHGDRTQRERERALELFRT--GRCPILVAT 512
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ +D
Sbjct: 513 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGVATAFFNPRD 563
>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 494
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 165/305 (54%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV+ K+ S H R+T + GG + PQ L I++V+ TPGR+
Sbjct: 79 RALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQIQELRRGIEIVIATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF PDI++ L L AS+ Q++L SA
Sbjct: 139 LDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLP--ASR------QSLLFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL D+ Q I R + + + I H SG + L A L +P
Sbjct: 191 TFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVS--SGMKRNLLAHLLRHQPD- 247
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VF +T + HFL + IS + HG+ Q+R E L FK G LV
Sbjct: 248 ---TQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKA--GKLRVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + +VI ++ P + DY+HR GRT R G +G SLV ++ L I
Sbjct: 303 ATDVAARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEEKHLLADI 362
Query: 315 EEAIR 319
++ I+
Sbjct: 363 QKLIK 367
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 174/321 (54%), Gaps = 34/321 (10%)
Query: 13 MKP-RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
M P R P RA++L PTREL+ QV K+ + H RST+V GG ++PQ L +++
Sbjct: 107 MSPARHPVRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVLLRGGVEI 166
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNG 128
V+ TPGR+L HIE N+ ++ LV+DEAD M D GF PD+++ L+P K R
Sbjct: 167 VIATPGRLLDHIEQKNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLP-KQR------ 219
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG-----SENK 183
Q ++ SAT + ++KL A L ++A + K++ SE++
Sbjct: 220 ---QNLMFSATFSPEIKKLA-------ATFLNDPLTIEVARSNQTADKVTQVVYKVSEDQ 269
Query: 184 LEALLQVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
AL+ L L + + +V+VF NT + + L + +S HG+ QER+ L
Sbjct: 270 KHALVAHL---LRQRDLKQVIVFSNTKIGASRLARVLEQEGMSATAIHGDKSQQERMAAL 326
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
FK G+ LV TD+AARGLD+ D+ VI FD P N+ DY+HR GRT R GA G
Sbjct: 327 EAFKK--GEIDVLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGASGDAI 384
Query: 301 SLVAKKDVLLADRIEEAIRKN 321
S+ + KD L IE+ I+++
Sbjct: 385 SIYSDKDERLLADIEKLIKQS 405
>gi|91179150|gb|ABE27759.1| vasa [Azumapecten farreri]
Length = 801
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 155/291 (53%), Gaps = 10/291 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+V+ PTREL+ Q+F A+ SH R ++ GG + Q + N +VVGTP
Sbjct: 428 QEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQLKQVENGAHIVVGTP 487
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I G + +KYL+LDEAD M D GFGPDI+K + L P QT++
Sbjct: 488 GRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHEL----GTPEKTERQTLM 543
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT + +QKL + L + + F ++ + K + L +L S
Sbjct: 544 FSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVD-RQQKRQKLCDIL--SE 600
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
S +K +VF ++ + +L+E+ T + HG+ +ER E L FK G P L+
Sbjct: 601 SGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQ--GKAPILI 658
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
T +AARGLD+ +V HVI +D P + +Y+HR GRT R G GK TS ++
Sbjct: 659 ATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFSE 709
>gi|402487889|ref|ZP_10834704.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401813057|gb|EJT05404.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 505
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ G +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDTKFVDAIEKLI 365
>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
Length = 776
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 166/313 (53%), Gaps = 15/313 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q++ AK S+ +R R ++ GG Q L+ ++V TPGR
Sbjct: 351 PLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 410
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + ++++LVLDEAD M D GF P IR ++NR P GQ QT++ S
Sbjct: 411 LDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQIRHI---IENRDMPPTGQ-RQTLMFS 466
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL------ 191
AT K +Q+L + L + + + ++ +E K LL +L
Sbjct: 467 ATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILWVNENE-KRSYLLDLLSRLREG 525
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
P S + ++F T + A++ FL +N+ + HG+ +ER + L F++ GDC
Sbjct: 526 SPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDALKCFRS--GDC 583
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-L 309
P LV T +AARGLD+ V HVI +D P + +Y+HR GRT RMG G TS +K+ +
Sbjct: 584 PILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTGRMGNLGIATSFFNEKNRNI 643
Query: 310 LADRIEEAIRKNE 322
++D +E I N+
Sbjct: 644 VSDLVELLIETNQ 656
>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 488
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 177/322 (54%), Gaps = 22/322 (6%)
Query: 1 LLRHDEAMLGVLMKP-RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR 58
LL H +A P R P RA+++ PTREL+ Q+ + + R+T+V GG +
Sbjct: 63 LLHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIE 122
Query: 59 PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVP 118
PQ L N ++++V TPGR+L +E + + + LVLDEAD M D GF PDI+K +
Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMAL 182
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS---TLHKKIASARHDFI 175
L ++ Q+++ SAT + ++KL D + + + T+++ I+ H
Sbjct: 183 LPSQR--------QSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRI- 233
Query: 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
E+K LL +++ K + +VF T + + + L+ ++I + HG+ Q
Sbjct: 234 ---KPESKFALLLHLVKQQDLK--QALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQ 288
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMG 294
+R + L++FK+ GD LV TD+AARG+D++ + HV+ ++ P N DY+HR GRT R G
Sbjct: 289 QRTQALSEFKH--GDVQILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAG 346
Query: 295 AKGKVTSLVAKKDVLLADRIEE 316
+KGK SLV++ + L IE+
Sbjct: 347 SKGKAISLVSEHETELLTSIEK 368
>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 398
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 164/308 (53%), Gaps = 16/308 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+R RA++L PTREL+ QV + F ST++ GG + PQ +L +D+V+ TP
Sbjct: 72 KRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSALRKGVDIVIATP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTV 134
GR+L H+ ++ D+++LVLDEAD M D GF DI+K L L KN+ QT+
Sbjct: 132 GRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNK---------QTL 182
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + ++KL D + +K S + + E K E L+ +++
Sbjct: 183 LFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQ-IVYPVDKERKRELLVHLIKE- 240
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VF T + + + L ++ IS+ HG R++ L +FK DGD L
Sbjct: 241 -GKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFK--DGDIRVL 297
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + HVI ++ P DY+HR GRT R G+ G SLV +
Sbjct: 298 VATDIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSS 357
Query: 314 IEEAIRKN 321
IE+ I+ +
Sbjct: 358 IEKLIKTD 365
>gi|409437511|ref|ZP_11264625.1| RNA helicase [Rhizobium mesoamericanum STM3625]
gi|408750939|emb|CCM75783.1| RNA helicase [Rhizobium mesoamericanum STM3625]
Length = 483
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 159/318 (50%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 48 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 107
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 108 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 167
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ G +
Sbjct: 168 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHGKD 217
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L S + ++FCN + L+ + S HG++ + R+ L
Sbjct: 218 YEKRAVLRDLVKSQTDLKNAIIFCNRKKDVSDLFRSLDRHGFSAGALHGDMDQRSRMTML 277
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
FK DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 278 QNFK--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 335
Query: 301 SLVAKKDVLLADRIEEAI 318
++V + D AD IE+ I
Sbjct: 336 TIVTRHDQKHADAIEKLI 353
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 20/309 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 97 RALMLTPTRELADQVYDNVARYARHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 156
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P K QT+L
Sbjct: 157 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAKR----------QTLLF 206
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + R ++ + K EA++ +L+
Sbjct: 207 SATFSPEIKKLAASYLHQPVTIEVARSNSANENVRQTVYQVQDGQ-KQEAVVHLLKQRAD 265
Query: 197 KG--NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF N+ + SR H E I+ HG+ ER++ L FK G
Sbjct: 266 QGLSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLEGFKQ--GTIDA 322
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ D+ VI FD P N+ DY+HR GRT R GA G S+ D L
Sbjct: 323 LVATDVAARGLDIADMPCVINFDLPFNAEDYVHRIGRTGRAGATGDALSIFVPGDERLLA 382
Query: 313 RIEEAIRKN 321
IE+ +++
Sbjct: 383 DIEKMLKRQ 391
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 167/312 (53%), Gaps = 24/312 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP RPRA++L PTREL+ QV + S H R RS ++ GG + PQ +L P+D++V
Sbjct: 76 KPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFHALRKPLDILVA 135
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H+ + ++ LVLDEAD M D GF DIRK L+P++
Sbjct: 136 TPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVER---------- 185
Query: 132 QTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
QT+L SAT + +++L +A +T ++ I + L+ +K + L
Sbjct: 186 QTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQ----VILAEQAHKRDLLS 241
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
++ S N+V+VFC T + + + L+++ ++ HG R L FKN
Sbjct: 242 HIIRE--SSWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKN-- 297
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G LV TD+AARGLD+D + +V+ F+ P DY+HR GRT R G++G SLV + +
Sbjct: 298 GKVVVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSE 357
Query: 308 VLLADRIEEAIR 319
+ L +IE R
Sbjct: 358 MRLLKQIERMTR 369
>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
Length = 539
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 171/310 (55%), Gaps = 27/310 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
RA++L PTREL++QV A ++ +A+F RST+V GG + PQ +L +++V+ TP
Sbjct: 98 RALILTPTRELADQV---AANVHTYAKFTPLRSTVVYGGVDINPQIQTLRRGVELVIATP 154
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L H++ ++ G ++ LVLDEAD M D GF PD+++ L+P K R Q
Sbjct: 155 GRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLP-KTR---------QN 204
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + +QKL + + + + + L E+K A+ +++
Sbjct: 205 LLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKRMAVCHLIQ- 263
Query: 194 SLSKG-NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
SK ++V+VF NT L ++R H E +S+ HG+ ER ++L FK G+
Sbjct: 264 --SKALSQVIVFSNTKLGTARLARHLEKEG-VSSTAIHGDKTQIERTKSLEAFKA--GEV 318
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ D+ VI +D P DY+HR GRT R GAKG S V K+D
Sbjct: 319 TVLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDERA 378
Query: 311 ADRIEEAIRK 320
IE+ I K
Sbjct: 379 LKDIEKLIGK 388
>gi|345566179|gb|EGX49125.1| hypothetical protein AOL_s00079g79 [Arthrobotrys oligospora ATCC
24927]
Length = 606
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 159/294 (54%), Gaps = 15/294 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++ PTREL+ Q+F + + + R +V GG +RPQ L D+VVGTPGR
Sbjct: 230 PLVLIVAPTRELATQIFLECRKFCYRSFMRPCLVYGGADIRPQRTELEKGCDLVVGTPGR 289
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I+ GN+ G ++Y V+DEAD M D GF P +RK L + + Q ++ S
Sbjct: 290 LQDFIDRGNISLGRVRYTVIDEADEMLDMGFEPQLRKLL----HSGDHNEDENLQIMMFS 345
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK---LSGSENKLEALLQVLEPS 194
AT +V+KL +E ++R + +I S + ++ + + K +A+ +L +
Sbjct: 346 ATFPASVRKLA-KEFLADDYVRINV--GRIGSVNPNVVQRIIYANFDKKRQAIFDLL--A 400
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S + ++F N+ + ++D FL + T + HG+ +ER + L F+ G CP L
Sbjct: 401 SSPAARTLIFVNSKREADSLDDFLWNKGLPTTSIHGDRTQREREDALIAFRT--GKCPIL 458
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+ TD+A+RGLD+ +V HVI +D P +Y HR GRTAR+G G T+ +D
Sbjct: 459 IATDVASRGLDVRNVLHVINYDMPKTIEEYTHRIGRTARIGTMGLATTFWNDRD 512
>gi|383785235|ref|YP_005469805.1| ATP-dependent RNA helicase [Leptospirillum ferrooxidans C2-3]
gi|383084148|dbj|BAM07675.1| putative ATP-dependent RNA helicase [Leptospirillum ferrooxidans
C2-3]
Length = 467
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 147/291 (50%), Gaps = 11/291 (3%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL+ Q F A S S + R R ++ GG LR QE SL P D+ V TPGR+
Sbjct: 99 RVLILSPTRELANQTFSAAMSYSKYTRSRQILLVGGTDLRRQEMSLRKPWDIAVVTPGRL 158
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ GN+ I +++DEAD M D GF PDI+ + L Q Q++L SA
Sbjct: 159 LDHLRRGNINLAHISMVIIDEADRMLDMGFFPDIQAIVAGLP--------QDRQSLLFSA 210
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ +Q+L + A +R ++ + + +S KL L +L+ +
Sbjct: 211 TLPPRIQELARSFQRDAAIIRLNSSEPSSPQIEQEIVTVSHGSQKLGILKTILDSVKNHT 270
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T + + L+ ST HG+ R L KF+ GD LV TD
Sbjct: 271 GQTIVFTRTKRGAEELSISLSGEGYSTDALHGDKSQHVRNRVLAKFRK--GDLKILVATD 328
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+AARGLD++ + HVI +D P + DY+HR GRT R G GK S D
Sbjct: 329 VAARGLDIEGITHVINYDLPQTAEDYVHRIGRTGRAGRTGKAISFYHPADT 379
>gi|440730386|ref|ZP_20910475.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
gi|440378920|gb|ELQ15528.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
Length = 439
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 168/308 (54%), Gaps = 17/308 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
RRPRA++L PTREL+ QV + S + R ST + GG + Q D+L +D+++ P
Sbjct: 75 RRPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQLDALRRGVDLLIACP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQT 133
GR+L H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR QT
Sbjct: 135 GRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPKQNR---------QT 185
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + +++L E ++ + + + H + G+ K E LL +L
Sbjct: 186 LLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGTR-KRELLLHLL-- 242
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF T + + + FL+++ + T HG +R+ L+ FK G
Sbjct: 243 AADSRMQTLVFARTKHGADKLTMFLDKSGLKTAAIHGNKSQGQRLRALSDFKA--GRITV 300
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R GA+G+ SLVA+ + L
Sbjct: 301 LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLR 360
Query: 313 RIEEAIRK 320
I +++
Sbjct: 361 AISRMLKR 368
>gi|357620336|gb|EHJ72566.1| DEAD box polypeptide 5 [Danaus plexippus]
Length = 592
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 153/287 (53%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + A R+T V GG R Q L +++V+ TPGR
Sbjct: 229 PVALVLAPTRELAQQIQQVATDFGNAAYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 288
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 289 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 340
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL ++ + ++ SA H+ +++ ENKL LLQ +
Sbjct: 341 ATWPKEVRKLAEDYLGDYVQINIGSMQ---LSANHNILQIVDVCQEHEKENKLNTLLQEI 397
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G+K ++F T + + V HG+ QER + L +FK G
Sbjct: 398 GQSQDPGSKTIIFVETKRKVENITRNIRRYGWPAVCMHGDKTQQERDDVLYQFK--QGRA 455
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
LV TD+AARGLD+D + +VI FD+P +S DY+HR GRT R +KG
Sbjct: 456 NILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 502
>gi|168068661|ref|XP_001786160.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662029|gb|EDQ49028.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 377
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 160/315 (50%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + K+ S A F++++V GG + Q L +++VV TPG
Sbjct: 4 PLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRAGVEIVVATPG 63
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R + H++ GN + Y+VLDEAD M D GF P IR+ + L + QT+L
Sbjct: 64 RFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKK--------HQTLLF 115
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL--EPS 194
SATM + ++ L E ++ + A+ + K++ E K+++LL +L E S
Sbjct: 116 SATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKE-KIDSLLALLVDEHS 174
Query: 195 LSKGNK-----VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
S + +VF V L E + HG ER L F+ G
Sbjct: 175 QSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK--G 232
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P DY+HR GRT R GA G+ TS ++DV
Sbjct: 233 TTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERDV 292
Query: 309 LLADRIEEAIRKNES 323
L +I AI + ES
Sbjct: 293 FLVAQIRRAITEAES 307
>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
Length = 527
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 82 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 141
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 142 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 201
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 202 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKD 251
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 252 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTML 311
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 312 QNFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 369
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 370 TLVTKRDTKFVDAIEKLI 387
>gi|427431569|ref|ZP_18920912.1| ATP-dependent RNA helicase [Caenispirillum salinarum AK4]
gi|425877717|gb|EKV26448.1| ATP-dependent RNA helicase [Caenispirillum salinarum AK4]
Length = 832
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 20/309 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR+++L PTREL+ QV K + + ++ GG + QE +L+ +D+++
Sbjct: 69 KARMPRSLILAPTRELASQVAENFKLYGKYHKLAMALLIGGESFKEQEAALDKGVDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNRASKPNGQG 130
TPGR++ + G ++ D+K LV+DEAD M D GF PD+ + FL ++
Sbjct: 129 TPGRLMDLFDRGRILLQDVKILVIDEADRMLDMGFIPDVERIVSFLPKIR---------- 178
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+ SATM ++KL D +R S A+ + + + +K AL ++
Sbjct: 179 -QTLFFSATMDAQIRKLADAFLMNPKEIRVSPKTSTAATVKQALV-IVDQHDKRRALREL 236
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L+ + +FCN + L ++ V HG++P ER L++FK GD
Sbjct: 237 LDKEDVRN--AFIFCNRKRDVGVLFRSLTKHGYDAVQLHGDMPQNERTVMLDRFKK--GD 292
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
+VC+D+AARG+D+ DV HV FD P +S DY+HR GRT R G +G +L +D
Sbjct: 293 AKLMVCSDVAARGIDISDVSHVFNFDVPSHSEDYVHRIGRTGRAGKEGHAYTLATPEDTK 352
Query: 310 LADRIEEAI 318
+ IE+ I
Sbjct: 353 YVEGIEKLI 361
>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
Length = 817
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 388 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 447
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 448 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 503
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I ++K LL +L
Sbjct: 504 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYDQDKRSYLLDLLSSI 559
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P SK N ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 560 RDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 617
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS K+
Sbjct: 618 DCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDKN 676
>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
Length = 398
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMML 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDTKFVDAIEKLI 365
>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 26/310 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + S ++ GG + PQ D L +D++V TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQVDRLRKGVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVLV 136
L H + G + +++ VLDEAD M D GF DI+K L +P K Q++L
Sbjct: 139 LDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKKVLAIIPAKK----------QSLLF 188
Query: 137 SATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
SAT + ++ L D + Q I R +T + IA IK+ G ENK + L +++
Sbjct: 189 SATFSDEIKALADRLLNKPQVIEVARRNTTAETIA---QRVIKV-GRENKKDLLAHLIKS 244
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++V+VF + + + FLN+N IS + HG R + L +FK GD
Sbjct: 245 --QNWHQVLVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKT--GDLTV 300
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLA 311
LV TD+AARG+D+D + HVI ++ P DY+HR GRT R GA+G+ SLV ++ LA
Sbjct: 301 LVATDIAARGIDIDMLPHVINYELPNVPEDYVHRIGRTGRAGAQGEALSLVCVDEEGFLA 360
Query: 312 DRIEEAIRKN 321
D IE+ I+++
Sbjct: 361 D-IEKLIKRS 369
>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
Length = 801
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 374 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 433
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 434 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 489
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I ++K LL +L
Sbjct: 490 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYDQDKRSYLLDLLSSI 545
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P SK N ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 546 RDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 603
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS K+
Sbjct: 604 DCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDKN 662
>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
Length = 552
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 155/316 (49%), Gaps = 21/316 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + S H + ++ GG + QE ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDKGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ D+K +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA----- 186
QT+ SATM ++++ + A + + + + GS EA
Sbjct: 180 QTLFFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRN 239
Query: 187 -LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L ++++ K ++FCN V L + HG++ +R L F+
Sbjct: 240 VLRKLIDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFR 299
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
GD LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G GK + +
Sbjct: 300 A--GDLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMICS 357
Query: 305 KKDVLLADRIEEAIRK 320
+D D IE+ I+K
Sbjct: 358 ARDEKNFDAIEKLIQK 373
>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 459
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 160/323 (49%), Gaps = 19/323 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + ++ GG Q
Sbjct: 59 MLTILEKGRARARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKK 118
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGRIL H G ++ +I+ LV+DEAD M D GF PDI+ L+P
Sbjct: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTR 178
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+L SATMT+ +QK+ ++ Q + +T + + H F+
Sbjct: 179 ----------QTLLFSATMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQY 228
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+K L+Q L ++FCN ++ L + S HG + + R++ L
Sbjct: 229 SKKFGLVQKLIREQDAIKNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKIL 288
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+ FK +G +V +DLAARGLD+ DV HV FD P +Y+HR GRT R G GK
Sbjct: 289 DSFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAF 346
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
+LV +DV D IE+ I K S
Sbjct: 347 TLVTSEDVKYIDAIEKLIEKKIS 369
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 179/334 (53%), Gaps = 26/334 (7%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G ++P RPRA++L P R L+ QV V+K + +F + V GG R+ Q+ ++ P+D
Sbjct: 422 GDFVRPGRPRALILVPHRLLAMQVANVSKRLGKAVKFSTFCVMGGDRISRQKSAMEKPLD 481
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNR------A 123
++V TP R+L+ +++ + D+KYLVLDEAD +F+ F +I L PL R +
Sbjct: 482 VMVATPQRLLELLQNKYVSLADVKYLVLDEADALFEEQFLAEITTVLRPLIERRKAIVAS 541
Query: 124 SKPNGQG---------FQTVLVSAT-MTKAVQKLVDEECQG-IAHLRTSTLHKKIASARH 172
++ QG Q + V AT M VQ + G IA T TLH+ +A+ H
Sbjct: 542 AEAEAQGQAPQRTFTPLQVMFVCATKMQHLVQAIRQYFPFGHIAAATTPTLHRALANLNH 601
Query: 173 DFIKLSGSENKLEALLQVLEPSLSKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
FI + G+ KL L ++ + KG K ++FC+ L S V H L+E I H
Sbjct: 602 RFIDVVGTIGKLSELKELAK----KGFKSPTLIFCDGLESVTWVHHRLSEFGIKAERLHS 657
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGR 289
++ ++R+ F G+ LVCTDLAARGLD V+HV+MFD P + +Y+HR GR
Sbjct: 658 QIQHRDRLTIWKSFLQ--GESKVLVCTDLAARGLDAPMVEHVVMFDPPRSHSEYVHRAGR 715
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEEAIRKNES 323
R G G VT+L + + L I+E I K ++
Sbjct: 716 AGRAGRTGTVTTLYSSSERRLVKDIQERIEKGQA 749
>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
Length = 609
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 160/295 (54%), Gaps = 19/295 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q F A+ ++ R+ ++ GGG +R Q L D+ V TPGR
Sbjct: 233 PVCLVLSPTRELAMQTFTEARKFIYNTGIRAVVLYGGGEVRRQLYELERGCDICVATPGR 292
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + + YLVLDEAD M D GF P IR+ + +S P +G QTV+ S
Sbjct: 293 LTDILERNRIGLHCVSYLVLDEADRMLDMGFAPQIRQVV----EHSSMPQ-EGRQTVMFS 347
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK----LSGSENKLEALLQVLEP 193
AT K +Q+L + + +L + + ++FI+ + E KL L+++L
Sbjct: 348 ATFPKEIQQLARDFLRDYLYLAVGRV-----GSTNEFIRQRLLYADQEQKLHYLVKLLRE 402
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + V++F T + ++ +L + VN HG+ Q+R E L FK G+ P
Sbjct: 403 NTN--GLVLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALRLFKT--GERPI 458
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TD+AARGLD+ ++ HVI D P N DY+HR GRT R G G TSLV++KD
Sbjct: 459 LVATDVAARGLDINNITHVINCDLPANIDDYVHRIGRTGRAGNVGVATSLVSEKD 513
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 164/303 (54%), Gaps = 16/303 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV+ KS + + FRS + GG ++PQ + ++ VV TPGR+
Sbjct: 79 RALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQIAEMKKGVEFVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H+E ++ + ++ LVLDEAD M D GF PDI++ L L K R Q++L S
Sbjct: 139 LDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNMLPKTR---------QSLLFS 189
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + +Q+L D Q + + ++ + H ++ + K + L+++L +
Sbjct: 190 ATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKK-DLLIKLLRS--GE 246
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + L I+ + HG+ ER++ L+ FKN G C LV T
Sbjct: 247 ITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKN--GGCKVLVAT 304
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+D + +VI F+ P DY+HR GRT R G +G SLV +V IE+
Sbjct: 305 DVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVGYLADIEK 364
Query: 317 AIR 319
I+
Sbjct: 365 LIK 367
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 166/312 (53%), Gaps = 24/312 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP RPRA++L PTREL+ QV + S H R RS ++ GG + PQ +L P+D++V
Sbjct: 76 KPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFHALRKPLDILVA 135
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H+ + ++ LVLDEAD M D GF DIRK L+P+
Sbjct: 136 TPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVDR---------- 185
Query: 132 QTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
QT+L SAT + +++L +A +T ++ I + L+ +K + L
Sbjct: 186 QTLLFSATFSDEIRELARGSLNNPDEVAVAARNTTNELITQQ----VILADQAHKRDLLS 241
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
++ S N+V+VFC T + + + L+++ ++ HG R L FKN
Sbjct: 242 HIIRE--SGWNQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKN-- 297
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G LV TD+AARGLD+D + +V+ F+ P DY+HR GRT R G++G SLV + +
Sbjct: 298 GKVVVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSE 357
Query: 308 VLLADRIEEAIR 319
+ L +IE R
Sbjct: 358 MRLLKQIERMTR 369
>gi|374619410|ref|ZP_09691944.1| DNA/RNA helicase, superfamily II [gamma proteobacterium HIMB55]
gi|374302637|gb|EHQ56821.1| DNA/RNA helicase, superfamily II [gamma proteobacterium HIMB55]
Length = 464
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 162/298 (54%), Gaps = 28/298 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
+A+V+CPTREL+EQV + + + S A ++ ++ GG PQ+DSL++ +VVGTPGR
Sbjct: 74 QALVMCPTRELAEQVAQTIRQLASRMANIKTVLLCGGKPFGPQKDSLSHGAHIVVGTPGR 133
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
I H++ GN+V +K VLDEAD M D GF + + + R K QT+L+S
Sbjct: 134 IEDHLKKGNLVLKGVKTFVLDEADRMLDMGFA----EVMANITQRLPKDR----QTILMS 185
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD-------FIKLSGSENKLEALLQV 190
AT ++++ + + T+ ++ HD F ++ G + ALL V
Sbjct: 186 ATFPDDIKRISRSIQRNPVQV---TIDDQLT---HDDDVLEQLFFEI-GKHERETALLAV 238
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
E + MVFCNT V FL E+ I + HG++ +ER + L +F N G
Sbjct: 239 FEH--HRPRNAMVFCNTKKQCSDVASFLCEHDIEAIALHGDLDQRERDQVLLQFAN--GS 294
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
CP LV +D+AARGLD+ ++ V+ D P ++ Y+HR GRT R G KGK SLV D
Sbjct: 295 CPVLVASDVAARGLDIPSLEMVVNVDLPRDADTYVHRIGRTGRAGEKGKAFSLVTPAD 352
>gi|424887777|ref|ZP_18311380.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173326|gb|EJC73370.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 505
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDSKFVDAIEKLI 365
>gi|298710365|emb|CBJ31982.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 613
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 166/323 (51%), Gaps = 34/323 (10%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG-GR-LRPQEDSLNNPIDMV 71
+P RPR ++L PT EL++QV+ VA+ +S FRS +GG GR + Q L +D++
Sbjct: 288 RPGRPRVLILAPTAELAQQVYGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVL 347
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFLVPLKNRASKPNGQG 130
V TPGR+ +E G + D + ++LDE D +F D F L P+ A +
Sbjct: 348 VATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQ------LAPIGTCAPEDT--- 398
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN-------- 182
Q + V+AT+ ++V ++ EE G L LH+ I SG
Sbjct: 399 -QFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPGEPRNEETG 457
Query: 183 ---KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQ 235
K +ALL LE ++ + +VFCNT+ R V++ L+ Q T+ YH + +
Sbjct: 458 LARKRDALLSQLERRMAL--RTLVFCNTIQGCRQVENMLSRASRGGQFETLVYHSAIDPK 515
Query: 236 ERVENLNKFKNEDGDCP-TLVCTDLAARGLDLD---VDHVIMFDFPLNSIDYLHRTGRTA 291
+ N+ +F + P +VCTD ++RG+D D V+HV+++DFP + I+Y+ R GRTA
Sbjct: 516 QAASNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTA 575
Query: 292 RMGAKGKVTSLVAKKDVLLADRI 314
R G KG VT L + V L I
Sbjct: 576 RAGRKGVVTVLAWGRQVPLVREI 598
>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
Length = 420
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 152/308 (49%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + R ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + + + F+ + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLREL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L + S HG++ + R L F+ DG+
Sbjct: 240 VRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFR--DGNL 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G +LV K+D
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 357
Query: 311 ADRIEEAI 318
D IE+ I
Sbjct: 358 VDAIEKLI 365
>gi|421588772|ref|ZP_16034016.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
gi|403706463|gb|EJZ21720.1| ATP dependent RNA helicase [Rhizobium sp. Pop5]
Length = 499
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 156/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + + ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTML 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QNFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDTKFVDAIEKLI 365
>gi|417104064|ref|ZP_11961294.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
Length = 499
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 156/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + + ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTML 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QNFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDTKFVDAIEKLI 365
>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 538
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 158/315 (50%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + K+ S A F++++V GG + Q L +++VV TPG
Sbjct: 184 PLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRAGVEIVVATPG 243
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R + H++ GN + Y+VLDEAD M D GF P IR+ + L + QT+L
Sbjct: 244 RFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKK--------HQTLLF 295
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL----E 192
SATM + ++ L E ++ + A+ + K++ E K+++LL +L
Sbjct: 296 SATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKE-KIDSLLALLVDEHS 354
Query: 193 PSLSKGNK---VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
SL +VF V L E + HG ER L F+ G
Sbjct: 355 QSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK--G 412
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P DY+HR GRT R GA G+ TS ++DV
Sbjct: 413 TTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERDV 472
Query: 309 LLADRIEEAIRKNES 323
L +I AI + ES
Sbjct: 473 FLVAQIRRAITEAES 487
>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
Length = 799
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 153/296 (51%), Gaps = 13/296 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 377 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 436
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 437 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 492
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE----- 192
AT K +Q+L + L + + + + ++K LL +L
Sbjct: 493 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTLLWVY-DQDKRSYLLDLLSSIRDG 551
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
P SK N ++F T + +++ FL + + HG+ +ER E L F++ GDCP
Sbjct: 552 PEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--GDCP 609
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS K+
Sbjct: 610 ILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDKN 665
>gi|399036553|ref|ZP_10733587.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398065881|gb|EJL57493.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 483
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 48 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 107
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ V+DEAD M D GF PDI + L+P
Sbjct: 108 LERGADVLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTR 167
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ G +
Sbjct: 168 ----------QTLFFSATMPPEIQKLADRFLQNPERVEVAKPASTAKTVTQRFVASHGKD 217
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + + ++FCN + L+ + S HG++ + R+ L
Sbjct: 218 YEKRAVLRDLIKAQTDLKNAIIFCNRKKDVSELFRSLDRHGFSAGALHGDMDQRSRMAML 277
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
FK DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 278 QNFK--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 335
Query: 301 SLVAKKDVLLADRIEEAI 318
++V + D AD IE+ I
Sbjct: 336 TIVTRHDQKHADAIEKLI 353
>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
Length = 408
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL++Q+ V + + + GG PQ SL + D+VV TPGR+
Sbjct: 64 RCLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRL 123
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+++G I YLVLDEAD M D GF P +R + + Q QT+++SA
Sbjct: 124 QDFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIP--------QERQTIMLSA 175
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVLE 192
T +VQKL E Q + ++ T+ + SA HD ++ + +L+ LL++
Sbjct: 176 TWPTSVQKLAQEFIQDASPVKI-TVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYH 234
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+K N+V+VF + V++FL + HG+ Q R + L+ FK DG P
Sbjct: 235 K--TKRNRVLVFVLYKKEAVRVENFLQKQGWKVTGIHGDKSQQARNQALSAFK--DGSHP 290
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+ TD+AARGLD+ DV+ VI + FPL + DY+HR GRT R G KG + D A
Sbjct: 291 LLIATDVAARGLDIPDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTADKARA 350
Query: 312 DRIEEAIRK 320
+ +R+
Sbjct: 351 GELVNILRE 359
>gi|356566895|ref|XP_003551661.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Glycine
max]
Length = 591
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 156/309 (50%), Gaps = 15/309 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 212 PLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGR 271
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 272 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPAAARQTMLFS 327
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R ++++ S + L LL + +
Sbjct: 328 ATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANG 387
Query: 196 SKGNKVM--VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + + VF T + A++H+L N HG+ QER L FK+ G+ P
Sbjct: 388 VQGKQALTLVFVETKKGADALEHWLCRNNFPATTIHGDRTQQERELALRSFKS--GNTPI 445
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV---- 308
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G KG T+ +
Sbjct: 446 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLAR 505
Query: 309 LLADRIEEA 317
LAD ++EA
Sbjct: 506 ALADLMQEA 514
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 22/307 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV +S + H RS +V GG + PQ D L +++++ TPGR+
Sbjct: 115 RALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRL 174
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 175 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 225
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + ++ +K A++Q++
Sbjct: 226 ATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVQLIRER 281
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + L + + HG+ ER++ L+ FK G+ L
Sbjct: 282 NLK--QVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKR--GEIEAL 337
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 338 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQLAD 397
Query: 314 IEEAIRK 320
IE+ I++
Sbjct: 398 IEKLIKR 404
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 22/307 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV +S + H RS +V GG + PQ D L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + ++ +K A++Q++
Sbjct: 200 ATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVQLIRER 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + L + + HG+ ER++ L+ FK G+ L
Sbjct: 256 NLK--QVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQLAD 371
Query: 314 IEEAIRK 320
IE+ I++
Sbjct: 372 IEKLIKR 378
>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase [Sinorhizobium medicae WSM419]
gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
WSM419]
Length = 499
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 154/308 (50%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + + + + G + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVLREL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S ++FCN + L+ + S HG++ + R+ L FK DG+
Sbjct: 240 IRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFK--DGNI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G G ++V K+D+
Sbjct: 298 KLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKF 357
Query: 311 ADRIEEAI 318
AD IE+ I
Sbjct: 358 ADAIEKLI 365
>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913801|ref|ZP_18337165.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392849977|gb|EJB02498.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 505
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDSKFVDAIEKLI 365
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 18/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PRA++L PTREL+ QV K + + ++ GG + Q+D LN +D+++
Sbjct: 101 RARMPRALILEPTRELAIQVADNLKQYGQYLKLSHALLMGGESIVEQKDILNRGVDIIIA 160
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQ 132
TPGR++ + G ++ IK LV+DEAD M D GF PD+ + + L K R Q
Sbjct: 161 TPGRLMDLFDKGAILLNQIKILVIDEADRMLDMGFIPDVERIISFLPKTR---------Q 211
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L+SATM+ ++KL D + T +A+ + + + K L Q+L
Sbjct: 212 TLLLSATMSPEIKKLTDSFLSNPTEI-TVAPPSSVATTIESGLIIVPEKRKRATLRQLLR 270
Query: 193 PSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
++G K ++FCN + LN + + HG++ Q R + + +FKN G+
Sbjct: 271 ---NEGVKNAIIFCNRKKDVDILTRSLNRHGFQSSALHGDLTQQHRTKTMEEFKN--GEI 325
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LVC+D+AARG+D+D + HV FD P + DY+HR GRT R G G SL + D
Sbjct: 326 QFLVCSDIAARGIDVDHLSHVFNFDLPRQAEDYVHRIGRTGRAGRTGFAYSLATEDDKET 385
Query: 311 ADRIEEAIRK 320
+ IE I+K
Sbjct: 386 IEAIEALIQK 395
>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 531
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 13/307 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q +R R+T V GG PQ +L N +++ + TPGR
Sbjct: 191 PIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQARALANGVEICIATPGR 250
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK +P+ QT+L S
Sbjct: 251 LIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI-----TSQVRPD---RQTLLWS 302
Query: 138 ATMTKAVQKLVDEEC-QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
AT K +Q L + C + H+ ++ + + ++ + K + L Q+LE +
Sbjct: 303 ATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQLLE-RIM 361
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G+K+++F +T ++ + L + ++ HG+ +ER L +FK+ G P ++
Sbjct: 362 DGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKS--GKSPIMIA 419
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+A+RGLD+ D+ HVI +DFP DY+HR GRT R GAKG S LA +
Sbjct: 420 TDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKYKLAKDLI 479
Query: 316 EAIRKNE 322
+R+ E
Sbjct: 480 GVLREAE 486
>gi|424895190|ref|ZP_18318764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179417|gb|EJC79456.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 505
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 60 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 120 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR 179
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 180 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKD 229
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + S HG++ + R L
Sbjct: 230 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTL 289
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 290 QSFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASF 347
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 348 TLVTKRDSKFVDAIEKLI 365
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 168/308 (54%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV +S + H RS +V GG + PQ + L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL-EP 193
AT + ++KL + Q I R+++ + ++ +K A++Q++ E
Sbjct: 200 ATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVQLIRER 255
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
SL +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 256 SL---KQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
Length = 722
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+++ PTREL Q+F A+ ++ R +V GG +R Q LN +++ GTP
Sbjct: 355 QEPKAIIVAPTRELINQIFLEARKFAYGTVVRPVVVYGGVSIRHQVSDLNKGCNVLCGTP 414
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ IE G + ++Y VLDEAD M D GF PD+R+ + P+ +G QT++
Sbjct: 415 GRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFEPDMRRLVA----SPGMPSREGRQTLM 470
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +QKL + + L + + FI++ G +K E LL +++
Sbjct: 471 FSATFPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEV-GKFSKREQLLDLVK-- 527
Query: 195 LSKGN-KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ GN + +VF + + FL + + T + HG+ +R + L FK G CP
Sbjct: 528 -TCGNERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADFKY--GKCPV 584
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
LV T +AARGLD+ DV HV+ FD P + +Y+HR GRT R G G+ S
Sbjct: 585 LVATSVAARGLDIPDVQHVVNFDLPGSIDEYVHRIGRTGRCGNVGRAVSF 634
>gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 481
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 158/312 (50%), Gaps = 18/312 (5%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A++L PTREL+ QV +I + R ++T V G R Q L +VVGTPG
Sbjct: 72 KPQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+E G + +KYLVLDEAD M + GF + L L + + T+L
Sbjct: 132 RVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRT--------TMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + + +L D Q + +T +IA H +IK++ + K L V +
Sbjct: 184 SATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVT-DKTKFAVLKDV--TVVE 240
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
++ M+FC T V L HG + ER+ + F+ G+ LV
Sbjct: 241 NPDRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRA--GEFRYLVA 298
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARG+D++ + HVI +D P+ Y+HRTGRT R GA GK SLV + D+ +E
Sbjct: 299 TDVAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVE 358
Query: 316 ----EAIRKNES 323
EAI + ++
Sbjct: 359 QYRGEAIERRQA 370
>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 429
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 160/304 (52%), Gaps = 13/304 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +++ PTREL+EQ++ K++S H R+ + GG + PQ+ L D+V+ PGR+
Sbjct: 72 RGLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKLRAGTDIVIACPGRL 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ G + + D++ LV+DEAD MFD GF PDIRK L L +P QT+L SA
Sbjct: 132 LDHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCL----VRPER---QTLLFSA 184
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM V+KLV E ++ T+ + + H + ++ ALL+ + +
Sbjct: 185 TMPADVRKLVQEFLTDPVTVQIGTVAPAV-TVTHALYPV--RQDLKTALLKQILRQIEDA 241
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
V+VF T + + V L + + + G + R L+ FK DG LV TD
Sbjct: 242 GSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFK--DGTFKVLVATD 299
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+A+RG+D+ DV HVI +D P + Y+HR GRT R+G G + V +D + +E+
Sbjct: 300 IASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRALEKL 359
Query: 318 IRKN 321
++
Sbjct: 360 LKTT 363
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ D L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + ++ +K A++Q++
Sbjct: 200 ATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEV----AEGDKTGAVVQLIR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -ERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKR--GEVEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|15965498|ref|NP_385851.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|334316380|ref|YP_004548999.1| DEAD/DEAH box helicase [Sinorhizobium meliloti AK83]
gi|384529564|ref|YP_005713652.1| DEAD/DEAH box helicase [Sinorhizobium meliloti BL225C]
gi|384536104|ref|YP_005720189.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407720695|ref|YP_006840357.1| ATP-dependent RNA helicase [Sinorhizobium meliloti Rm41]
gi|433613528|ref|YP_007190326.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|333811740|gb|AEG04409.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
BL225C]
gi|334095374|gb|AEG53385.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
gi|336032996|gb|AEH78928.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407318927|emb|CCM67531.1| ATP-dependent RNA helicase [Sinorhizobium meliloti Rm41]
gi|429551718|gb|AGA06727.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 499
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 154/308 (50%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q L + + F+ G + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLREL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S ++FCN + L+ + S HG++ + R+ L FK DG+
Sbjct: 240 IRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFK--DGNI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G G ++V K++
Sbjct: 298 KLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKF 357
Query: 311 ADRIEEAI 318
+D IE+ I
Sbjct: 358 SDAIEKLI 365
>gi|378826015|ref|YP_005188747.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
gi|365179067|emb|CCE95922.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
Length = 501
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 156/308 (50%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + + + F+ G + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVARPASTAITVTQRFVAAHGKDYEKRAVLRDL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L+ + S HG++ + R+ L FK DG+
Sbjct: 240 IRAQGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFK--DGNI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G G ++V K+D+
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDMKF 357
Query: 311 ADRIEEAI 318
+D IE+ I
Sbjct: 358 SDAIEKLI 365
>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 464
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR+++L PTREL+ QV + S H + ++ GG Q +L+ +D+++
Sbjct: 69 KARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALDKGVDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNRASKPNGQG 130
TPGR+L H E G ++ D+K LV+DEAD M D GF PD+ + L PL+
Sbjct: 129 TPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLR---------- 178
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+ SAT++ + K+ + + + A ++ + ++K L +
Sbjct: 179 -QTLFFSATLSDDIHKISHKFVSNPKIIEVAP-PASTADTVAQHLQWTDVKSKRAVLRDL 236
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L K ++FCN + L +++ S V HG++ R+E L+KFK G+
Sbjct: 237 LRVETVKN--AVIFCNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKK--GE 292
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
P L+ +D+AARGLD+ + HV FD P+N+ DY+HR GRT R G G+ ++ A KD
Sbjct: 293 VPLLIASDVAARGLDIAGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSGRAFTIAAGKD 350
>gi|418402468|ref|ZP_12975980.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359503602|gb|EHK76152.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 499
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 154/308 (50%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q L + + F+ G + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLREL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S ++FCN + L+ + S HG++ + R+ L FK DG+
Sbjct: 240 IRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFK--DGNI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G G ++V K++
Sbjct: 298 KLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKF 357
Query: 311 ADRIEEAI 318
+D IE+ I
Sbjct: 358 SDAIEKLI 365
>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
albilineans GPE PC73]
Length = 456
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 166/310 (53%), Gaps = 17/310 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D+L +D+++
Sbjct: 74 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLDALRRGVDLLIAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR+L H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT + +++L E ++ + + + H + G+ K E LL +L
Sbjct: 185 TLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGAR-KRELLLHLLA 243
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
K + +VF T + + + FL+++ I HG +R+ L FK
Sbjct: 244 ADSRK--QTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKAS--RIT 299
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R GA+G+ SLVA+ + L
Sbjct: 300 VLVATDIAARGIDIDQLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLL 359
Query: 312 DRIEEAIRKN 321
I ++++
Sbjct: 360 RAIARLLKRD 369
>gi|398353630|ref|YP_006399094.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
gi|390128956|gb|AFL52337.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
Length = 501
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVTENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + + + F+ G + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVARPASAAITVTQRFVAAHGKDYEKRAVLRDL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L+ + S HG++ + R+ L FK DG+
Sbjct: 240 IRAQGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLASFK--DGNI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G G ++V K+D
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKF 357
Query: 311 ADRIEEAI 318
+D IE+ I
Sbjct: 358 SDAIEKLI 365
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 166/311 (53%), Gaps = 22/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K+ + H RST+V GG ++ Q L +++V+ TPGR+
Sbjct: 143 RALILTPTRELAVQVAENVKAYAQHTPLRSTVVFGGMDMKGQTVILKAGVEIVIATPGRL 202
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ G ++ LV+DEAD M D GF PD+++ L+P K Q ++
Sbjct: 203 LDHVEQKNISLGQVQMLVMDEADRMLDMGFLPDLQRIINLLPAKR----------QNLMF 252
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + ++ K+ EN+ AL L
Sbjct: 253 SATFSPEIKKLANTFLTNPVTIEVARSNQTADKVTQVVYKV--PENQKHALTAHLL-RQR 309
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +V++F NT + + L + + V HG+ QER+ L FK G+ LV
Sbjct: 310 ELKQVIIFSNTKIGASRLAKGLEQEGMKAVAIHGDKTQQERMAALESFKK--GEIDILVA 367
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-LLAD-- 312
TD+AARGLD+ D+ VI +D P N+ DY+HR GRT R GA G S+ + KD LLAD
Sbjct: 368 TDVAARGLDITDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDALSIYSDKDERLLADIE 427
Query: 313 -RIEEAIRKNE 322
I++ IR+ E
Sbjct: 428 KLIKQTIRRGE 438
>gi|374335411|ref|YP_005092098.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372985098|gb|AEY01348.1| DEAD/DEAH box helicase-like protein [Oceanimonas sp. GK1]
Length = 459
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 169/309 (54%), Gaps = 24/309 (7%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVV 72
RRPRA++L PTREL+EQ +A +IS +A++ T + GG ++ Q + L D+V+
Sbjct: 73 RRPRALILTPTRELAEQ---LADNISGYAKYLPLSVTALYGGVKMGGQANKLQAGTDLVI 129
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+++HI GN+ D++++VLDEAD M D GF D+ K + + + P Q
Sbjct: 130 ATPGRLMEHITLGNVALSDVEFVVLDEADRMLDMGFIADVLKLM-----QLTAPK---RQ 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT + AV +L + +R + ++ + RH + S +++ E
Sbjct: 182 TLLFSATTSPAVNELAHKVLHNHQQIRVTRVNSTADTVRHAVYPVEESRK-----IELFE 236
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L++ N +V+VF +T + + L +N++ HG+ R + FK+
Sbjct: 237 QLLAEQNWFQVLVFTSTKEQADRLQAGLKKNKVEAAVCHGDKSQGNRRRAIADFKS--AK 294
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
L+ T++AARGLD+ +DHV+ F+ P DY+HR GRT R GA GK S V++++
Sbjct: 295 LQVLIATEVAARGLDIQGLDHVVNFNLPYLPEDYVHRIGRTGRAGAPGKAISFVSREEEQ 354
Query: 310 LADRIEEAI 318
RIE+ I
Sbjct: 355 TLARIEKLI 363
>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 156/315 (49%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + K S FR+ +V GG + Q L +D++V TPG
Sbjct: 189 PLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLELRAGVDVIVATPG 248
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H++ GN I ++VLDEAD M D GF P IR+ + L + QT+L
Sbjct: 249 RLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEK--------HQTLLF 300
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM ++ L E +R + A+ K+S SE K++ LL +L S
Sbjct: 301 SATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESE-KIDCLLALLVEDAS 359
Query: 197 KGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + +VF V L + V HG +R L F++ G
Sbjct: 360 QAERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSDREAALRDFRS--G 417
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P DY+HR GRT R G+ G+ TS +D+
Sbjct: 418 STSILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDQDL 477
Query: 309 LLADRIEEAIRKNES 323
L +I++AI ES
Sbjct: 478 FLVAQIKKAIADVES 492
>gi|375106422|ref|ZP_09752683.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374667153|gb|EHR71938.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 474
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ H + S ++ GG + PQ D L +D++V TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRTYGKHVKLSSMVMFGGVGMGPQIDKLRRGVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H + G + ++ VLDEAD M D GF DI+K L L + Q++L SA
Sbjct: 139 LDHHQQGTLDLSHVQIFVLDEADRMLDMGFIHDIKKVLAVLPAKK--------QSLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R + + IA H G E K E L ++
Sbjct: 191 TFSDEIKALADRLLNAPALIEVARRNATAENIAQKLHPV----GRERKKELLAHLIRE-- 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
++V+VF + + + +LN+ I + HG R + L +FK+ GD P LV
Sbjct: 245 GDWHQVLVFTRMKHGANRLAEYLNKEGIGAMAIHGNKSQGARTKALAEFKS--GDLPVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ F+ P DY+HR GRT R GA G+ SLV + + I
Sbjct: 303 ATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGANGEAISLVCLDEEIFLRDI 362
Query: 315 EEAIRKN 321
E+ I+++
Sbjct: 363 EKLIKRS 369
>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 582
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 158/315 (50%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + K+ A FR+ +V GG + Q L +++VV TPG
Sbjct: 209 PLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSELRAGVEIVVATPG 268
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R + H++ GN + Y+VLDEAD M D GF P IR+ + L + QT+L
Sbjct: 269 RFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKK--------HQTLLF 320
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM + ++ L E ++ + A+ + K++ E K+E+LL +L S
Sbjct: 321 SATMPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKE-KIESLLALLVDEHS 379
Query: 197 KG---NK----VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ N+ +VF V L E + HG ER L F+ G
Sbjct: 380 QSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRK--G 437
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P DY+HR GRT R GA G+ TS ++D+
Sbjct: 438 TTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFYTERDM 497
Query: 309 LLADRIEEAIRKNES 323
L +I AI + ES
Sbjct: 498 FLVAQIRRAITEAES 512
>gi|359786269|ref|ZP_09289405.1| ATP-dependent RNA helicase RhlB [Halomonas sp. GFAJ-1]
gi|359296383|gb|EHK60635.1| ATP-dependent RNA helicase RhlB [Halomonas sp. GFAJ-1]
Length = 424
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PRA+++ PTREL+ Q+ + AK+++ + V GG + Q +SL + ID++V
Sbjct: 116 KPGAPRALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRESLGSKIDILVA 175
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L + ++ +++ LVLDEAD M GF PD+++ + P + QT
Sbjct: 176 TPGRLLDFHQKRDIDLSEVEVLVLDEADRMLSMGFIPDVKRII------RYTPKKEERQT 229
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT T + L + AH+ + A + L ++K L+ +LE
Sbjct: 230 FLFSATFTDDILSLASQWTLDPAHVEIEVTVENQADIDQR-VYLVSDDDKERLLVNLLEQ 288
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+VMVF N + R +D L + +S G+VP +R++ L F+ +G+
Sbjct: 289 --ESFERVMVFGNRRDLVRKLDSLLKKAGVSVAMLSGDVPQNQRIKTLESFR--EGEIQV 344
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A RG+ + DV HVI + P + DY+HR GRT R GAKG S V ++D
Sbjct: 345 LVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLP 404
Query: 313 RIEEAI 318
IE I
Sbjct: 405 EIERYI 410
>gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 463
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 160/301 (53%), Gaps = 20/301 (6%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQV---FRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
+L + +K R ++VVLCPTREL+EQV R S +H+ + + + GG R PQ SL
Sbjct: 65 LLALHVKQMRIQSVVLCPTRELAEQVSAELRKLASFTHNIKIVT--LCGGARFVPQCISL 122
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRA 123
+ +VVGTPGRILQH+++ + + IK LVLDEAD M D GF DI K + + K R
Sbjct: 123 EHGAHIVVGTPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKER- 181
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
QT+L SAT + ++++ +E Q A + +K A I L E +
Sbjct: 182 --------QTLLFSATFPREIEQMC-QEVQKEALQISVEEEQKSAPLSISQIALKVEERE 232
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EA L+ + V++FC T + A+ L E + HG++ R ENL
Sbjct: 233 KEATLEAFLLN-EMPKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLL 291
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N G LV TDLAARGLD+ DV+ VI ++ P Y HR GRT RMG +GK S
Sbjct: 292 FAN--GSAQILVATDLAARGLDIKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISF 349
Query: 303 V 303
V
Sbjct: 350 V 350
>gi|431805723|ref|YP_007232624.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
gi|430799698|gb|AGA64369.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
Length = 464
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 11/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R P A++L PTREL+ QV + + + ++ GG Q L +D+++
Sbjct: 69 RARMPLALILEPTRELAAQVADSFEKYGKNHKLNVALLIGGVSFEEQNRKLERGVDVLIC 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L H E G ++ IK LV+DEAD M D GF PDI + + + QT
Sbjct: 129 TPGRMLDHFERGKLLMSGIKILVIDEADRMLDMGFIPDIENIVRIISSTR--------QT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SATM+ +QK+ + + + + +H F+ + +L+ L
Sbjct: 181 LLFSATMSLELQKISKNFLRNPKTIEVNPSSSAAKTVKHWFVAAHSESYQKRVVLRKLIR 240
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S ++FCN ++ LN + S HG++ + R++ L+ FK +G
Sbjct: 241 SQDDLKNAIIFCNQKKDVTSLFRSLNHHGFSVCAIHGDMNQRMRMKILDNFK--EGTIQL 298
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
+V +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV KD+ +D
Sbjct: 299 MVASDIAARGLDIHDVGHVFNFDVPIHAEDYIHRIGRTGRAGRHGKAFTLVTHKDIKYSD 358
Query: 313 RIEEAI 318
IE+ I
Sbjct: 359 VIEKLI 364
>gi|440781688|ref|ZP_20959916.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
gi|440220406|gb|ELP59613.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
Length = 522
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 175/314 (55%), Gaps = 31/314 (9%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R +A++L PTREL+ Q++ + +S + + RS V GG + Q S+ + ++VGTP
Sbjct: 71 RFIQALILTPTRELAIQIYEELRRLSKYDKVRSLPVYGGQSMDRQISSIKKDVSIIVGTP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L HI + ++ YLVLDEAD M + GF DI + +KN S+ QT+L
Sbjct: 131 GRVLDHIRRKTLKLNNLNYLVLDEADEMLNMGFIDDIEEI---IKNTNSER-----QTLL 182
Query: 136 VSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
SATM K ++KL + ++ + I L+ S KI ++ + +LE+L ++L
Sbjct: 183 FSATMPKPIKKLSENYLKKDVKHIQILKKSLTVSKIDQYYYEV----HNNTRLESLCRIL 238
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKN 246
+ +S+ ++FC T ++VD + + +S+ Y HG++ + R+ LNKFKN
Sbjct: 239 D--ISEPESAIIFCRT---KKSVDELV--STMSSKGYNIEGMHGDMKQKNRLSTLNKFKN 291
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G+ L TD+AARG+D++ + HVI ++ P ++ Y+HR GRT R G SL+ +
Sbjct: 292 --GNLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGRANRSGTAISLITR 349
Query: 306 KDVLLADRIEEAIR 319
KD +IE+ I+
Sbjct: 350 KDFTKLKQIEKDIK 363
>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 460
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 168/315 (53%), Gaps = 13/315 (4%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H + PR+PRA++L PTREL+ QV + S + R S ++ GG + Q
Sbjct: 59 LLQHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQ 118
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
D+L +D+++ PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L
Sbjct: 119 LDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLP 178
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
Q QT+L SAT + +++L E + ++ + + S H + G+
Sbjct: 179 R-------QDRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGA 231
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
K + LL +L + + +VF T + S + FL ++ I T HG +R+
Sbjct: 232 R-KRDLLLHLL--AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRA 288
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L+ FK G LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+
Sbjct: 289 LSDFKA--GRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEA 346
Query: 300 TSLVAKKDVLLADRI 314
SLVA+ + L +I
Sbjct: 347 ISLVAQDEAKLLRQI 361
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 132 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 191
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 192 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQR----------QTLLF 241
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK---LEALLQVLEP 193
SAT + +++L + + + + + R ++ + + + L Q E
Sbjct: 242 SATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMVYQVEDGQKQAAVVHLLRQRAEQ 301
Query: 194 SLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
LSK + +VF N+ + SR H E I+ HG+ ER++ L FKN G
Sbjct: 302 GLSK--QCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLEGFKN--GTID 356
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ D+ VI FD P ++ DY+HR GRT R GA G S+ D L
Sbjct: 357 ALVATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDERLL 416
Query: 312 DRIEEAIRKN 321
IE+ I+++
Sbjct: 417 TDIEKLIKRS 426
>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
Length = 622
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 154/315 (48%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + ++ S ++ +V GG + Q L +++ V TPG
Sbjct: 192 PLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSELRAGVEIAVATPG 251
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R + H++ GN I Y+VLDEAD M D GF P IR+ + L + QT+L
Sbjct: 252 RFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEK--------HQTLLF 303
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM ++ L E ++ + + +K+SGSE K++ LL +L S
Sbjct: 304 SATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSE-KIDRLLDLLVEEAS 362
Query: 197 KGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ K +VF V L +S V+ HG ER L F++
Sbjct: 363 QAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQNFRSSST 422
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P + DY+HR GRT R G+ G TS +D+
Sbjct: 423 SI--LVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDM 480
Query: 309 LLADRIEEAIRKNES 323
L I +AI ES
Sbjct: 481 FLVTNIRKAIADAES 495
>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase [Rhizobium etli CFN 42]
gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 527
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 82 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRK 141
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 142 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 201
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + + + F+ +
Sbjct: 202 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSKD 251
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A+L+ L + ++ ++FCN + L + + HG++ + R L
Sbjct: 252 YEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMML 311
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 312 QNFR--DGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAF 369
Query: 301 SLVAKKDVLLADRIEEAI 318
+LV K+D D IE+ I
Sbjct: 370 TLVTKRDTKFVDAIEKLI 387
>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 158/308 (51%), Gaps = 11/308 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ AK S+ + + GG + Q L +D++V TPGR
Sbjct: 203 PLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGGAPIHQQLRELERGVDILVATPGR 262
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + IKYL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 263 LVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIV----EQMDMPPPGSRQTMLFS 318
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + + R +F++ S + L LL +
Sbjct: 319 ATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQRVEFVQESDKRSHLMDLLYAQRANG 378
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF T + +++H+L N + HG+ QER + L FK+ G+ P
Sbjct: 379 VQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRSQQEREQALRSFKS--GNTPI 436
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + +A
Sbjct: 437 LVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNASMAR 496
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 497 PLSELMQE 504
>gi|379012218|ref|YP_005270030.1| putative ATP-dependent RNA helicase [Acetobacterium woodii DSM
1030]
gi|375303007|gb|AFA49141.1| putative ATP-dependent RNA helicase [Acetobacterium woodii DSM
1030]
Length = 496
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 16/301 (5%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+ +VL PTREL+ QV +I R + + + G +R QE L +VVGTPG
Sbjct: 72 KPQVLVLTPTRELALQVHEDIFNIGRFKRVKVSALYGKSPIRRQEKELKQKTHVVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVL 135
R+L HIE GN + +IKYL++DEAD M + GF + + + L KNR T+L
Sbjct: 132 RVLDHIERGNFITDEIKYLIIDEADEMLNMGFIDQVEEIINELPKNRV---------TML 182
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT+ +Q+L + + K+ A F+ +G+ +KLE L VL L
Sbjct: 183 FSATLENEIQRLSQKYMNNPKIIEIEAEAKR-TDAIEQFVYKTGNVDKLEVLNNVL--VL 239
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VFCNT A+ + L +N + HG + ER + + +FK G L+
Sbjct: 240 ENPDSCIVFCNTQERVNAIFNLLGKNNKAFEKIHGGMEQDERTQVMQRFKK--GAFRYLI 297
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+ ++ VI +D P Y+HR GRT R G GK +LV+ K+ L I
Sbjct: 298 ATDVAARGIDVHEISLVINYDVPWEKETYIHRIGRTGRRGTMGKAITLVSVKEGRLFSDI 357
Query: 315 E 315
E
Sbjct: 358 E 358
>gi|357462687|ref|XP_003601625.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355490673|gb|AES71876.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 613
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 11/308 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 224 PLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGR 283
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 284 LVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPAGVRQTMLFS 339
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R ++++ S + L LL +
Sbjct: 340 ATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANG 399
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF T + A++H+L N HG+ QER L FK+ G+ P
Sbjct: 400 VQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKS--GNTPI 457
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G KG T+ + + +A
Sbjct: 458 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMAR 517
Query: 313 RIEEAIRK 320
+++ +++
Sbjct: 518 SLQDLMQE 525
>gi|352100973|ref|ZP_08958484.1| ATP-dependent RNA helicase RhlB [Halomonas sp. HAL1]
gi|350600894|gb|EHA16951.1| ATP-dependent RNA helicase RhlB [Halomonas sp. HAL1]
Length = 424
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PRA+++ PTREL+ Q+ + AK+++ + V GG + Q +SL + ID++V
Sbjct: 116 KPGAPRALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRESLGSKIDILVA 175
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L + ++ +++ LVLDEAD M GF PD+++ + P + QT
Sbjct: 176 TPGRLLDFHQKRDIDLNEVEVLVLDEADRMLSMGFIPDVKRII------RYTPKKEERQT 229
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT T + L + AH+ + A + L ++K L+ +L+
Sbjct: 230 FLFSATFTDDILNLASQWTLEPAHVEIEVTVENQADIDQR-VYLVSDDDKQRLLVNLLQQ 288
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+VMVF N + R +D L + +S G+VP +R++ L F+ +GD
Sbjct: 289 --ESFERVMVFGNRRDLVRKLDDLLKKAGVSVAMLSGDVPQGQRIKTLESFR--EGDIQV 344
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A RG+ + DV HVI + P + DY+HR GRT R GAKG S V ++D
Sbjct: 345 LVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLP 404
Query: 313 RIEEAI 318
IE I
Sbjct: 405 EIERYI 410
>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 522
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 157/296 (53%), Gaps = 28/296 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV K S H + R + GG + PQ L D+VV TPGR+
Sbjct: 71 RALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLERA-DVVVATPGRL 129
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HIE G + GD++ LVLDEAD M D GF D+ + + P+ + QT++ SA
Sbjct: 130 LDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDEC------PSDR--QTMMFSA 181
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG------SENKLEALLQVLE 192
T++K +Q L + + K A A D KL + K L+ +L+
Sbjct: 182 TVSKDIQYLSSKYMNNPS--------KVFAKAYVDSDKLKQVYIDVPKKMKFSLLVHLLK 233
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
K VMVFCNT ++ V L +N I + HG +R L+KF + +
Sbjct: 234 S--EKSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHA- 290
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LVCTD+AARGLD+ V HV FD P + +Y+HR GRTAR G +GKV ++VA D
Sbjct: 291 -LVCTDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVADVD 345
>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CMR15]
Length = 481
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RS +V GG + PQ + L ++++V TPGR+
Sbjct: 79 RALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 139 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 188
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 189 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 245
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 246 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQ--GTVD 303
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 304 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 363
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 364 ADIEKLIKRN 373
>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|381170549|ref|ZP_09879705.1| ATP-dependent RNA helicase RhlE [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|418517745|ref|ZP_13083904.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|380689006|emb|CCG36192.1| ATP-dependent RNA helicase RhlE [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|410705589|gb|EKQ64060.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 460
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 168/315 (53%), Gaps = 13/315 (4%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H + PR+PRA++L PTREL+ QV + S + R S ++ GG + Q
Sbjct: 59 LLQHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQ 118
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
D+L +D+++ PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L
Sbjct: 119 LDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLP 178
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
Q QT+L SAT + +++L E + ++ + + S H + G+
Sbjct: 179 R-------QDRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA 231
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
K + LL +L + + +VF T + S + FL ++ I T HG +R+
Sbjct: 232 R-KRDLLLHLL--AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRA 288
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L+ FK G LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+
Sbjct: 289 LSDFKA--GRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEA 346
Query: 300 TSLVAKKDVLLADRI 314
SLVA+ + L +I
Sbjct: 347 ISLVAQDEAKLLRQI 361
>gi|67624257|ref|XP_668411.1| RNA-dependent helicase [Cryptosporidium hominis TU502]
gi|54659606|gb|EAL38175.1| similar to RNA-dependent helicase p68 (DEAD-box protein p68)
(DEAD-box protein 5) [Cryptosporidium hominis]
Length = 406
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 18/286 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL EQ+ A + R+T + GG RPQ+ S+ N +++ + PGR
Sbjct: 62 PICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRNGVEICIACPGR 121
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E+G + YLVLDEAD M D GF P IRK + + +P+ QT+L S
Sbjct: 122 LIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQI-----RPDR---QTLLWS 173
Query: 138 ATMTKAVQKLVDEECQGIA-HLRTSTLHKKIASARHDFIK----LSGSENKLEALLQVLE 192
AT K VQKL + C+ I H+ ++ AS H+ + + SE K + + +
Sbjct: 174 ATWPKEVQKLARDLCKEIPIHINVGSVDALKAS--HNIKQYVNVVEESEKKARLKMFLGQ 231
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ KV++FC T + + L + + HG+ +ER LN+F+ G P
Sbjct: 232 VMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRT--GASP 289
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
++ TD+AARGLD+ D++ VI FDFP DY+HR GRT R GA G
Sbjct: 290 IMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATG 335
>gi|390351278|ref|XP_786173.3| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Strongylocentrotus purpuratus]
Length = 428
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 171/317 (53%), Gaps = 21/317 (6%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P+R A+VL PTREL+ Q+ +++ ++ GG + Q L
Sbjct: 60 ALLETPQRLFALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPH 119
Query: 70 MVVGTPGRILQHIED--GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASK 125
+++ TPGR++ H+E+ G + G +KYLV+DEAD + + F +I K L +P + R
Sbjct: 120 VMIATPGRLVDHLENTKGFNLRG-LKYLVMDEADRILNMDFEAEIDKILKVIPKQRR--- 175
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
T L SATMTK V KL Q + ST ++ ++ + +I + ++ K
Sbjct: 176 -------TYLYSATMTKKVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIP-AKYKDC 227
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+ +L GN MVFC+T N+++ V L ++ + HG++ +R+ LNKFK
Sbjct: 228 YLVSILNEF--AGNSFMVFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFK 285
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
++ L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK + V
Sbjct: 286 SKSRS--ILIATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVT 343
Query: 305 KKDVLLADRIEEAIRKN 321
+ DV L RIE+ I K
Sbjct: 344 QYDVELYQRIEQLIDKK 360
>gi|407478595|ref|YP_006792472.1| DEAD/DEAH box helicase [Exiguobacterium antarcticum B7]
gi|407062674|gb|AFS71864.1| DEAD/DEAH box helicase domain protein [Exiguobacterium antarcticum
B7]
Length = 481
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 157/312 (50%), Gaps = 18/312 (5%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A++L PTREL+ QV +I + R ++T V G R Q L +VVGTPG
Sbjct: 72 KPQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+E G + +KYLVLDEAD M + GF + L L + + T+L
Sbjct: 132 RVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRT--------TMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + + +L D Q + T +IA H +I ++ + K L V +
Sbjct: 184 SATFPQDIHQLSDRYMQAPKEVEIMTKATEIAEIEHSYISVT-DKTKFAILKDV--TVVE 240
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
++ M+FC T V L + HG + ER+ + F+ G+ LV
Sbjct: 241 NPDRCMIFCRTKEHVDFVAQGLTAMEYPVEKIHGGMEQDERLAVMKAFRA--GEFRYLVA 298
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARG+D++ + HVI +D P+ Y+HRTGRT R GA GK SLV + D+ +E
Sbjct: 299 TDVAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVE 358
Query: 316 ----EAIRKNES 323
EAI K ++
Sbjct: 359 QYRGEAIEKRQA 370
>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 463
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 162/300 (54%), Gaps = 23/300 (7%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA+VL PTREL+ QV + S + R S ++ GG + Q DSL +DMV+
Sbjct: 74 PRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDSLRRGVDMVIAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTS---TLHKKIASARHDFIKLSGSENKLEALLQ 189
T+L SAT +++++L E + ++ + T+ + IA H + K E LL
Sbjct: 185 TLLFSATFPESIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPV----DTARKRELLLH 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L + +VF T + S + L + I HG +R+ L FK+ G
Sbjct: 241 LL--GQDARVQTLVFAKTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKS--G 296
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R GA G+ SLV+++D
Sbjct: 297 KVKVLVATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQEDA 356
>gi|418520909|ref|ZP_13086956.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410703332|gb|EKQ61826.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 460
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 168/315 (53%), Gaps = 13/315 (4%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H + PR+PRA++L PTREL+ QV + S + R S ++ GG + Q
Sbjct: 59 LLQHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQ 118
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
D+L +D+++ PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L
Sbjct: 119 LDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLP 178
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
Q QT+L SAT + +++L E + ++ + + S H + G+
Sbjct: 179 R-------QDRQTLLFSATFEENIKQLALEFMRNPMQIQVAPSNTVAESITHRVHPVDGA 231
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
K + LL +L + + +VF T + S + FL ++ I T HG +R+
Sbjct: 232 R-KRDLLLHLL--AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRA 288
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L+ FK G LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+
Sbjct: 289 LSDFKA--GRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEA 346
Query: 300 TSLVAKKDVLLADRI 314
SLVA+ + L +I
Sbjct: 347 ISLVAQDEAKLLRQI 361
>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
Length = 501
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + + + F+ G + + A+L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L+ + S HG++ + R+ L FK DG+
Sbjct: 240 IRAQGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFK--DGNI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G G ++V K+D
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKF 357
Query: 311 ADRIEEAI 318
+D IE+ I
Sbjct: 358 SDAIEKLI 365
>gi|389614656|dbj|BAM20360.1| DEAD box ATP-dependent RNA helicase [Papilio polytes]
Length = 539
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 152/287 (52%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + + R+T V GG R Q L +++V+ TPGR
Sbjct: 180 PIALVLAPTRELAQQIQQVACDFGNASYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 239
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 240 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 291
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL ++ + +L SA H+ +++ ENKL LLQ +
Sbjct: 292 ATWPKEVKKLAEDYLGDYLQINIGSLQ---LSANHNILQIVDVCQEHEKENKLNVLLQEI 348
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G K ++F T + + V HG+ QER + L +FK G
Sbjct: 349 GQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFK--QGRA 406
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
LV TD+AARGLD+D + +VI FD+P +S DY+HR GRT R +KG
Sbjct: 407 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 453
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RS +V GG + PQ + L ++++V TPGR+
Sbjct: 93 RALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 153 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 203 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 259
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 260 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQ--GTVD 317
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 318 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 377
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 378 ADIEKLIKRN 387
>gi|347758155|ref|YP_004865717.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590673|gb|AEP09715.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 489
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 160/319 (50%), Gaps = 20/319 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G K R PR++VL PTREL+ QV + + ++ GG + Q L+
Sbjct: 62 EILSGGRAKARMPRSLVLVPTRELAAQVAENFDTYGKYNALTKALLVGGESMGDQIKLLD 121
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF---LVPLKNR 122
+D+++ TPGR+L E GN++ DIK LV+DEAD M D GF PDI K + P++
Sbjct: 122 RGVDVLIATPGRLLDLFERGNILLNDIKVLVIDEADRMLDMGFIPDIEKIVSKIPPMR-- 179
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+L SATM +++L D+ + + A+ R + +
Sbjct: 180 ---------QTLLFSATMPPEIKRLADKFLSNPKTIAVAAPASTNANVRQALVWVK-ERQ 229
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K+E L +++ K +FCN + FL + + HG++ R + L
Sbjct: 230 KMELLDALIQQEDVK--NAFIFCNRKKDIAGLAKFLQNHNYAAAPLHGDMVQSARTKTLL 287
Query: 243 KFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FK +G LVC+D+AARGLD+D V HV FD P+++ DY+HR GRT R G G+ +
Sbjct: 288 DFK--EGLVSLLVCSDVAARGLDVDAVSHVFNFDVPMHADDYVHRIGRTGRAGMTGRAWT 345
Query: 302 LVAKKDVLLADRIEEAIRK 320
+ D IE+ I+K
Sbjct: 346 MATPDDTKYVAAIEQRIQK 364
>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|346726385|ref|YP_004853054.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|346651132|gb|AEO43756.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 462
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 168/315 (53%), Gaps = 13/315 (4%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H + PR+PRA++L PTREL+ QV + S + R S ++ GG + Q
Sbjct: 59 LLQHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQ 118
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
D+L +D+++ PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L
Sbjct: 119 LDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLP 178
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
Q QT+L SAT + +++L E + ++ + + S H + G+
Sbjct: 179 R-------QDRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA 231
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
K + LL +L + + +VF T + S + FL ++ I T HG +R+
Sbjct: 232 -RKRDLLLHLL--AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRA 288
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L+ FK G LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+
Sbjct: 289 LSDFKA--GRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEA 346
Query: 300 TSLVAKKDVLLADRI 314
SLVA+ + L +I
Sbjct: 347 ISLVAQDEAKLLRQI 361
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 15/308 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PRA++L PTREL++QV ++ + RS ++ GG +RPQ +L +D+VV TP
Sbjct: 73 RAPRALILLPTRELAQQVGDSVRTYGKYLSLRSAVIYGGVAIRPQTQTLRQGVDIVVATP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H+E N+ I+ LVLDE D M D GF DIRK L L + + QT++
Sbjct: 133 GRLLDHLEQKNLNLSQIEILVLDECDRMLDMGFIHDIRKILAKLPSSSR-------QTLM 185
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPS 194
SAT + +++L + + + + AS + + L + K E L + S
Sbjct: 186 FSATFSTTIRQLANTLLSSPTLIEVAA--RNTASEQVEQVVHLVDRDRKRELLSYTI--S 241
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+V+VF T + + + L ++ + T HG R++ LN FK G L
Sbjct: 242 FHNWKQVLVFTRTKHGASRLAEQLAKDGLQTAAIHGNKSQSARMKALNDFKQ--GKVRVL 299
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+A+RGLD++ + +V+ ++ P DY+HR GRT R G +G+ SLV K++ +
Sbjct: 300 VATDVASRGLDIERLPYVVNYELPNVPEDYVHRIGRTGRAGKEGRAVSLVCKEEYEYLES 359
Query: 314 IEEAIRKN 321
IE+ + +
Sbjct: 360 IEKLLNQT 367
>gi|390990131|ref|ZP_10260421.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555096|emb|CCF67396.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 460
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 168/315 (53%), Gaps = 13/315 (4%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL+H + PR+PRA++L PTREL+ QV + S + R S ++ GG + Q
Sbjct: 59 LLQHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQ 118
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
D+L +D+++ PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L
Sbjct: 119 LDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLP 178
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
Q QT+L SAT + +++L E + ++ + + S H + G+
Sbjct: 179 R-------QDRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA 231
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
K + LL +L + + +VF T + S + FL ++ I T HG +R+
Sbjct: 232 R-KRDLLLHLL--AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRA 288
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L+ FK G LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+
Sbjct: 289 LSDFKA--GRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEA 346
Query: 300 TSLVAKKDVLLADRI 314
SLVA+ + L +I
Sbjct: 347 ISLVAQDEAKLLRQI 361
>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
Length = 539
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 152/287 (52%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + + R+T V GG R Q L +++V+ TPGR
Sbjct: 181 PIALVLAPTRELAQQIQQVACDFGNASYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 240
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 241 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 292
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL ++ + +L SA H+ +++ ENKL LLQ +
Sbjct: 293 ATWPKEVKKLAEDYLGDYLQINIGSLQ---LSANHNILQIVDVCQEHEKENKLNVLLQEI 349
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G K ++F T + + V HG+ QER + L +FK G
Sbjct: 350 GQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFK--QGRA 407
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
LV TD+AARGLD+D + +VI FD+P +S DY+HR GRT R +KG
Sbjct: 408 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 454
>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
Length = 784
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 369 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 428
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 429 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 484
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I ++K LL +L
Sbjct: 485 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEQDKRSYLLDLLSSI 540
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P K N ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 541 RNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQKEREEALRCFRS--G 598
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 599 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 657
>gi|384108601|ref|ZP_10009493.1| Superfamily II DNA and RNA helicase [Treponema sp. JC4]
gi|383869842|gb|EID85449.1| Superfamily II DNA and RNA helicase [Treponema sp. JC4]
Length = 546
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 164/301 (54%), Gaps = 12/301 (3%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +VL PTREL+ QV AK + + ++ V GG Q +L +D+V+GTPGR+
Sbjct: 73 KLLVLVPTRELAVQVEEEAKVLVGTSGLKAFSVYGGVGYEKQIATLKKGVDIVIGTPGRV 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ E GN+ + + V+DEAD MFD GF PD+R+ L + P + QT+L SA
Sbjct: 133 IDLQEGGNLDLTNAAFCVIDEADRMFDMGFYPDLRQILKCI------PEAEDRQTMLFSA 186
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ V+ L E + + + ++ + + + ++ S +K++ L+ +L+
Sbjct: 187 TLNSYVKNLAWEYTRDPKEITIEAENITVSEIQQELLHVA-SSDKMKLLIGILKK--ENP 243
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VFCNT + V L N+I G++P +R++ LN FK G+ P LV TD
Sbjct: 244 ASAIVFCNTKRTCEVVAKRLQINEIKADFLIGDLPQSKRLKLLNSFKA--GEVPVLVATD 301
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+ D+ VI +D P+ + +Y+HR GRTAR G GK + +++DV IE
Sbjct: 302 VAARGIDVDDLAMVINYDLPVEAENYVHRIGRTARAGKSGKAYTFCSEQDVYNLPAIERY 361
Query: 318 I 318
+
Sbjct: 362 V 362
>gi|408823675|ref|ZP_11208565.1| ATP-dependent RNA helicase [Pseudomonas geniculata N1]
Length = 471
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + GS + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGSRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 167/308 (54%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ + L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL-EP 193
AT + ++KL Q I R+++ + ++ +K A++Q++ E
Sbjct: 200 ATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVQLIRER 255
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
SL +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 256 SL---KQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 18/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ + L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + ++KL + + + + + R +++ +K A++Q++ +
Sbjct: 200 ATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEG-DKTGAVVQLIR---ER 255
Query: 198 G-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+ LV
Sbjct: 256 GLKQVIVFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKR--GEIEALVA 313
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + IE
Sbjct: 314 TDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIE 373
Query: 316 EAIRK 320
+ I++
Sbjct: 374 KLIKR 378
>gi|407775396|ref|ZP_11122691.1| DEAD/DEAH box helicase [Thalassospira profundimaris WP0211]
gi|407281821|gb|EKF07382.1| DEAD/DEAH box helicase [Thalassospira profundimaris WP0211]
Length = 623
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 152/304 (50%), Gaps = 14/304 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + ++ GG Q L D+++ TP
Sbjct: 71 RMPRSIILEPTRELATQVAANFDTYGKYISLSKALIIGGESAAEQGKVLEKGADVIIATP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ E G ++ D K LV+DEAD M D GF PDI K + L + QT+
Sbjct: 131 GRLIDTFERGKLLLSDCKLLVIDEADRMLDMGFIPDIEKIVNMLPKQR--------QTLF 182
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM K +++L D+ + S + H + L +K EAL +++
Sbjct: 183 FSATMPKEIKRLADKFLSNPKEITVSPPSTMATTVEHKLLVLDDF-DKREALRRLIRAED 241
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ VFCN + L ++ + HG++ ER E L KFK G+ LV
Sbjct: 242 VRN--AFVFCNRKKDVDILYKSLTKHGFNAGRMHGDLAQSERTETLAKFKT--GEITLLV 297
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
C+D+AARG+D+ DV HV FD P N+ DY+HRTGRT R G GK +L +D L I
Sbjct: 298 CSDVAARGIDVADVSHVFNFDVPFNAEDYVHRTGRTGRAGRDGKAFTLAVPEDGKLVAAI 357
Query: 315 EEAI 318
++I
Sbjct: 358 NKSI 361
>gi|351066214|gb|AEQ39080.1| DEAD/DEAH box helicase domain-containing protein [Oceanimonas
doudoroffii]
Length = 458
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 24/309 (7%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRS---TMVSGGGRLRPQEDSLNNPIDMVV 72
RRPRA++L PTREL+EQ +A +I+ +A++ S T + GG ++ Q + LN D+V+
Sbjct: 73 RRPRALILTPTRELAEQ---LADNITAYAKYLSISVTALYGGVKMGGQANKLNAGTDLVI 129
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+++HI GN+ D++++VLDEAD M D GF D+ K + + Q
Sbjct: 130 ATPGRLMEHITLGNVALTDVEFVVLDEADRMLDMGFINDVIKLM--------QLTAAKRQ 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT + AV +L + +R + ++ + +H + +++ E
Sbjct: 182 TLLFSATTSPAVNELAHKVLHNHQQIRVTRVNSTADTVQHVVYPVEEGRK-----IELFE 236
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L++ N +V+VF +T + + L +N+I HG+ R + FK+ G
Sbjct: 237 QLLAENNWFQVLVFTSTKEQADRLQAGLKKNKIEAAVCHGDKSQGNRRRAIADFKS--GK 294
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
L+ T++AARGLD+ +DHV+ F+ P DY+HR GRT R GA G S V++++
Sbjct: 295 LQVLIATEVAARGLDIQGLDHVVNFNLPYLPEDYVHRIGRTGRAGAAGNAISFVSREEEQ 354
Query: 310 LADRIEEAI 318
RIE+ I
Sbjct: 355 TLARIEKLI 363
>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 506
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 150/308 (48%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + R ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ V+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + S + F+ G + + A L+ L
Sbjct: 180 QTLFFSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L + S HG++ + R L F+ DG
Sbjct: 240 IRAQTDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFR--DGQI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLDL DV HV FD P++S DY+HR GRT R G G +LV K+D
Sbjct: 298 QLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKH 357
Query: 311 ADRIEEAI 318
D IE+ I
Sbjct: 358 IDAIEKLI 365
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV +S + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ G ++ LVLDEAD M D GF PD+++ L L QT+L SA
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPTER--------QTLLFSA 200
Query: 139 TMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL-EPS 194
T + ++KL Q I R+++ + ++ +K A++Q++ E S
Sbjct: 201 TFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVQLIRERS 256
Query: 195 LSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
L +V+VFCN+ + +SR + ++T HG+ ER++ L+ FK G+
Sbjct: 257 L---KQVIVFCNSKIGASRLARQLERDGVVATA-IHGDRSQSERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. B100]
gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
Length = 462
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA-RKRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|398380059|ref|ZP_10538177.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397721375|gb|EJK81923.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 498
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 150/308 (48%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + R ++ GG Q+ L D+++
Sbjct: 62 RARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERGADVLIC 121
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ V+DEAD M D GF PDI + L+P
Sbjct: 122 TPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 171
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + S + F+ G + + A L+ L
Sbjct: 172 QTLFFSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDL 231
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L + S HG++ + R L F+ DG
Sbjct: 232 IRAQTDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFR--DGQI 289
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLDL DV HV FD P++S DY+HR GRT R G G +LV K+D
Sbjct: 290 QLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKH 349
Query: 311 ADRIEEAI 318
D IE+ I
Sbjct: 350 IDAIEKLI 357
>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 365
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 167/316 (52%), Gaps = 16/316 (5%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
GV + P +VL PTREL+ Q+ A+ + S +V GG +R Q + D
Sbjct: 46 GVRGRRTYPECLVLAPTRELASQIQDEAQKFLYCTGIASVVVYGGADVRDQLRQIERGCD 105
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR++ IE G + ++K+LVLDEAD M D GF P IR+ + + P+G
Sbjct: 106 LLVATPGRLVDLIERGRLSMENVKFLVLDEADRMLDMGFEPQIRRIV----EQEGMPHGD 161
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK---LSGSENKLEA 186
QT++ SAT +Q+L + + L ++ SA + ++ +KL+A
Sbjct: 162 DRQTMMFSATFPANIQRLAGDFMRDYIFLTVG----RVGSASENVVQSVEYVEQNDKLDA 217
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L++ L ++ +G +++F T + V+ L E + HG+ +ER ++L FK
Sbjct: 218 LMRFL-LTIQEG-LILIFVETKRNCDFVEDILCERGFPACSIHGDKSQREREDSLRAFKT 275
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G CP LV TD+AARGLD+ +V V+ +D P N DY+HR GRT R G G S V +
Sbjct: 276 --GRCPVLVATDVAARGLDIPNVTQVVNYDLPTNIDDYVHRIGRTGRAGNTGAALSFVNE 333
Query: 306 KDVLLADRIEEAIRKN 321
K+ +A + E + ++
Sbjct: 334 KNSGVARELRELLEES 349
>gi|384248412|gb|EIE21896.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 394
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 166/319 (52%), Gaps = 28/319 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR ++L PT EL QV VA+ ++ A FRS ++GG + R Q+++L+ +D+VV TPGR
Sbjct: 70 PRVIILAPTTELCAQVLMVARGLAKGAPFRSIALTGGFKWRTQKEALDEGVDVVVATPGR 129
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +HI+ GN+ + +VLDE D + F + + PL RA+ P F VLV+
Sbjct: 130 LGEHIKAGNLRLDQCRAVVLDEVDVLLGDTFA--FAQQVAPL--RAAAPEATRF--VLVT 183
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS---------ENKLEALL 188
AT+ + V + ++ GI LH+ + SG E K ALL
Sbjct: 184 ATLAENVYLQLQQDFPGITPAFGPGLHRTAPGVLEQLVDCSGGDVINEDTGFERKSAALL 243
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------QISTVNYHGEVPAQERVENL 241
+VL + +VFCN + + R V++ LN N + + YH + R + L
Sbjct: 244 RVLRE--QDCTRTIVFCNKIETCRKVENLLNRNGEDPNEEGLLVLPYHAAIEEVARSKAL 301
Query: 242 NKFKNE--DGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTAR-MGAKG 297
+F DG LVCTD A+RG+D V+HV++FDFP + +Y+ R GR +R GA G
Sbjct: 302 KEFLAPPMDGAKMVLVCTDRASRGIDSAHVEHVVLFDFPRDPSEYVRRAGRVSRGAGASG 361
Query: 298 KVTSLVAKKDVLLADRIEE 316
V+ LV + V LA ++ E
Sbjct: 362 VVSILVLGRQVSLARQLLE 380
>gi|412993972|emb|CCO14483.1| predicted protein [Bathycoccus prasinos]
Length = 575
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 157/317 (49%), Gaps = 21/317 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISH---HARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P A+VL PTREL++Q+ + K+ S RF++T+V GG + Q L N ++ VV T
Sbjct: 191 PTAIVLAPTRELAQQIEKETKAFSQAIDKRRFKTTIVVGGSSMNEQRGDLRNGVECVVAT 250
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HI N +LVLDEAD M D GF I + L N KP QT+
Sbjct: 251 PGRLIDHIHQNNTNLRRASFLVLDEADRMLDMGFEQQILEIL----NATPKPR----QTL 302
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL--- 191
L SATM V+ L E ++ T+ ++ K+ K++ L ++L
Sbjct: 303 LFSATMPPEVEVLAGEYLVKPVKVKVGTVSAPTSNVAQSLEKVPNDVAKIDRLCRMLVEE 362
Query: 192 -EPSLSKGNK---VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
S++ GN +VF + V LN ++T + HG ER L F
Sbjct: 363 KMESVAHGNAPPMSIVFVERKAKAEDVADMLNAEGVATASLHGGRTQGEREAALKDFTR- 421
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G C LV TD+AARGLD+ V HV+ D P N DY+HR GRT R G G+ TS
Sbjct: 422 -GLCSVLVATDVAARGLDVKGVQHVVNMDLPRNFEDYVHRIGRTGRNGMTGRATSFYTDS 480
Query: 307 DVLLADRIEEAIRKNES 323
D + +I+ A+++ ES
Sbjct: 481 DAFIVSQIKRALQELES 497
>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
Length = 571
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 162/315 (51%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+V+ PTREL++Q+ AK+ + ++ FR+ ++ GG + Q L + +VV TPG
Sbjct: 185 PFAIVMAPTRELAQQIETEAKTFTRSSKGFRTAIIVGGTNMSEQRSMLRGGVQIVVATPG 244
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H++ GN + ++VLDEAD M D GF P IR+ L+ L KP+ QT+L
Sbjct: 245 RLIDHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVLMNL----PKPH----QTLLF 296
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM V+ L + ++ A+ K+ +E K++ L+ +L
Sbjct: 297 SATMPVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAE-KVDRLVTMLISEQR 355
Query: 197 KGNKV-------MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ K+ +VF + + + LN +S HG ER L+ +K G
Sbjct: 356 EAQKLGHSMPMTVVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAALHDYKT--G 413
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
C LV TD+AARGLD+ V HV+ D P N DY+HR GRT R G G+ TS +D
Sbjct: 414 RCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFYTDRDS 473
Query: 309 LLADRIEEAIRKNES 323
+ +I+ A+ + E+
Sbjct: 474 FIVAQIKRALMELEA 488
>gi|302791241|ref|XP_002977387.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
gi|300154757|gb|EFJ21391.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
Length = 413
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 158/313 (50%), Gaps = 23/313 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL++Q+ V + + + GG PQ SL + D+VV TPGR+
Sbjct: 64 RCLVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRL 123
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+++G I YLVLDEAD M D GF P +R + + Q QT++ SA
Sbjct: 124 QDFVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIP--------QERQTIMFSA 175
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIA----SARHDFIKL------SGSENKLEALL 188
T +VQKL E Q + S L + SA HD ++ + +L+ LL
Sbjct: 176 TWPTSVQKLAQEFIQDASPELISFLQITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELL 235
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
++ +K N+V+VF + V++FL + + HG+ Q R + L+ FK D
Sbjct: 236 RLYHK--TKRNRVLVFVLYKKEAVRVENFLQKQGWNVTGIHGDKSQQARNQALSAFK--D 291
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G P L+ TD+AARGLD+ DV+ VI + FPL + DY+HR GRT R G KG + D
Sbjct: 292 GSHPLLIATDVAARGLDIPDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTAD 351
Query: 308 VLLADRIEEAIRK 320
A + +R+
Sbjct: 352 KARAGELVNILRE 364
>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 460
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA-RKRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
Length = 419
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 158/309 (51%), Gaps = 18/309 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQV-FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ R PR ++L PTREL+ QV AK ++H + ++ GG QE + D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVEASFAKYGANH-KLNVALLIGGMAFGDQEAKIMRGADVLI 127
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQG 130
TPGR+L + G ++ +I+ LV+DEAD M D GF PDI + LVP
Sbjct: 128 ATPGRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTR--------- 178
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+ SATM + +L + + + A+ R + G K E L ++
Sbjct: 179 -QTLFFSATMPPEITRLTEAFLHNPVRIEVARASSTAATIRQALVATHGHAEKRETLRRL 237
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L + + N + +FCN + L+++ S HG++ R+ +L+ FKN GD
Sbjct: 238 LRGAENFKNAI-IFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKN--GD 294
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LVC+D+AARGLD+ DV HV FD P +S DY+HR GRT R G G +LV +D
Sbjct: 295 VALLVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRK 354
Query: 310 LADRIEEAI 318
D+IE I
Sbjct: 355 YLDQIETLI 363
>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 460
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA-RKRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 460
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA-RKRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
Length = 802
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 380 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 439
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 440 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 495
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I ++K LL +L
Sbjct: 496 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEQDKRSYLLDLLSSI 551
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P K N ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 552 RDGPEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 609
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 610 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 668
>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 417
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV H F+ST++ GG ++ PQ +L D+V+ TPGR+
Sbjct: 80 RALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLRKGTDIVIATPGRL 139
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + +++YL+LDEAD M D GF DI+K L + N+ QT+L SA
Sbjct: 140 LDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNIIPNQR--------QTLLFSA 191
Query: 139 TMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + A++KL ++ I R +T + + A + K K E L ++
Sbjct: 192 TYSDAIKKLSNQFLNAPKLIEVARANTSSEIVKQAVYHVDK----TRKRELLTHLINE-- 245
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K +V+VF T + + + L + I+ V HG R + L FK GD LV
Sbjct: 246 GKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKK--GDVRVLV 303
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HVI ++ P S DY+HR GRT R G G+ SLV + I
Sbjct: 304 ATDIAARGIDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQNI 363
Query: 315 EEAIRKN 321
E+ I+K+
Sbjct: 364 EKLIKKD 370
>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 484
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 97 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIAC 156
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 157 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 209
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ + + LL +L +
Sbjct: 210 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKR-DLLLHLL--A 266
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 267 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 324
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 325 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 384
Query: 314 I 314
I
Sbjct: 385 I 385
>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
Length = 800
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 375 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 434
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 435 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 490
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I ++K LL +L
Sbjct: 491 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEQDKRSYLLDLLSSI 546
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P SK + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 547 RDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRS--G 604
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 605 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 663
>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
Length = 488
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 156/284 (54%), Gaps = 17/284 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 135 PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEVVIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K VQKL ++ + + ++ +A H+ +++ + E L++ L+
Sbjct: 247 ATWPKDVQKLANDFLKDFIQVNIGSME---LAANHNITQITEVCSDFEKRNKLIKHLDQI 303
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+ KV++F T + + +L ++ + HG+ +ER L +FK G P L
Sbjct: 304 SSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKA--GRSPIL 361
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ TD+A+RGLD+ D+ +VI +DFP N DY+HR GRT R GAKG
Sbjct: 362 IATDVASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKG 405
>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 394
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 20/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+V+ PTREL++Q+ AK+ + ++ FR+ ++ GG + Q +L + + +VV TPG
Sbjct: 106 PYAIVMAPTRELAQQIEAEAKTFTRSSKGFRTAIIVGGTNMSEQRGALRSGVQIVVATPG 165
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H++ GN + ++VLDEAD M D GF P IR+ L+ L KP+ QT+L
Sbjct: 166 RLIDHLQQGNTNLSRVSFVVLDEADRMLDMGFEPQIREVLMNLP----KPH----QTLLF 217
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM V+ L + ++ T A+ K+ +E K++ L+ +L
Sbjct: 218 SATMPSEVEALASDYLHKPVKVKVGTTSAPTANVSQHLEKVVDAE-KVDRLVTMLIGEQR 276
Query: 197 KGNKV-------MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ K+ ++F N + + LN + HG ER L+ +K G
Sbjct: 277 EAMKLGQDMPMTVIFVERKNRADEIAELLNAENVPAAALHGGRSQGEREAALHDYKT--G 334
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
C LV TD+AARGLD+ V HV+ D P N DY+HR GRT R G G+ TS +D
Sbjct: 335 RCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFYTDRD 393
>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
Length = 400
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 154/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q+F A+ S+ R +V GG Q ++ ++V GTP
Sbjct: 36 QEPEAIIVAPTRELINQIFLEARKFSYGTCVRPVVVYGGVSTGHQIREISRGCNVVCGTP 95
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 96 GRLLDLIGRGKIGLSKLRYLVLDEADRMLDMGFAPDMRR----LVGSPGMPSKENRQTLM 151
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT +Q++ + + L + FI+++ +K E LL++L+
Sbjct: 152 FSATYPDDIQRMAADFMKADYLFLAVGIVGGACTDVEQTFIQVT-KFSKREQLLELLK-- 208
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + ++ST + HG+ +ER + L F++ G CP L
Sbjct: 209 TTGMERTMVFVETKRQADFIAVFLCQEKVSTTSIHGDREQREREQALGDFRS--GKCPVL 266
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 267 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAISF 315
>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 429
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 155/296 (52%), Gaps = 28/296 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A++L PTREL+EQV + S + + GG + Q L N ++VVGTPGR+
Sbjct: 98 QALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKELKNA-EVVVGTPGRL 156
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + ++K LVLDEAD MFD GF D+ K + K Q QT+L SA
Sbjct: 157 LDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKII--------KECPQNRQTLLFSA 208
Query: 139 TMTKAVQKLVDEECQGIAHLRTST------LHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+TK + +L + + + T + L++ + + D KL L+ +L+
Sbjct: 209 TITKDIVRLSRKYMENPVRVSTESYIDPQKLNQVVYKVQDDM--------KLSLLVYLLQ 260
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
K N MVFCNT ++ V L ++ I+ V HG + ER L KF G+
Sbjct: 261 N--EKSNLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKF--HSGNIG 316
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LVCTD+A RGLD+ V HV +D P S Y+HR GRTAR G +GK ++++K D
Sbjct: 317 VLVCTDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKND 372
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 169/306 (55%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ + L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + ++KL + + + + + R +++ +K A++Q++ +
Sbjct: 200 ATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEG-DKTGAVVQLIR---ER 255
Query: 198 G-NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G +V+VFCN+ + +SR + I+T HG+ ER++ L+ FK G+ LV
Sbjct: 256 GLKQVIVFCNSKIGASRLARSLERDGVIATA-IHGDRSQNERMQALDAFKR--GEIEALV 312
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + I
Sbjct: 313 ATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADI 372
Query: 315 EEAIRK 320
E+ I++
Sbjct: 373 EKLIKR 378
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ + L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + ++ +K A++Q++
Sbjct: 200 ATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEV----AEGDKTGAVVQLIR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -ERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|356540089|ref|XP_003538523.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Glycine
max]
Length = 604
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 156/309 (50%), Gaps = 15/309 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 225 PLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGR 284
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 285 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPAGARQTMLFS 340
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R ++++ S + L LL + +
Sbjct: 341 ATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANG 400
Query: 196 SKGNKVM--VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + + VF T + +++H+L N HG+ QER L FK+ G+ P
Sbjct: 401 VQGKQALTLVFVETKKGADSLEHWLCRNSFPATTIHGDRTQQERELALRSFKS--GNTPI 458
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV---- 308
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G KG T+ +
Sbjct: 459 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLAR 518
Query: 309 LLADRIEEA 317
LAD ++EA
Sbjct: 519 ALADLMQEA 527
>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 586
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 163/310 (52%), Gaps = 20/310 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL EQ+ A + R+T + GG RPQ+ S+ N +++ + PGR
Sbjct: 242 PICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRNGVEICIACPGR 301
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E+G + YLVLDEAD M D GF P IRK + + +P+ QT+L S
Sbjct: 302 LIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQI-----RPDR---QTLLWS 353
Query: 138 ATMTKAVQKLVDEECQGIA-HLRTSTLHKKIAS----ARHDFIKLSGSENKLEALL-QVL 191
AT K VQKL + C+ I H+ ++ AS + ++ S + KL+ L QV+
Sbjct: 354 ATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKLKMFLGQVM 413
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ KV++FC T + + L + + HG+ +ER LN+F+ G
Sbjct: 414 ---VESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRT--GAS 468
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P ++ TD+AARGLD+ D++ VI FDFP DY+HR GRT R GA G S +
Sbjct: 469 PIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRM 528
Query: 311 ADRIEEAIRK 320
A + + +++
Sbjct: 529 ASDLIKVLKE 538
>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
Length = 793
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 374 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 433
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 434 LEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 489
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 490 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 545
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 546 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 603
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 604 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 662
>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
Length = 461
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGAR-KRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 459
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 160/308 (51%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K + H RS +V GG ++ Q SL ++++V TPGR+
Sbjct: 84 RALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTPSLMKGVEILVATPGRL 143
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + G ++ L+LDEAD M D GF PD+++ L L + Q ++ SA
Sbjct: 144 LDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKKR--------QNLMFSA 195
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL +E + I R++ K+ + K S + LL+
Sbjct: 196 TFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQKVYQLDKDSKDSFLAKLLLE------ 249
Query: 196 SKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S + +VF T L +SR + E I+ HG+ QER++ L FK G TL
Sbjct: 250 SNSEQTIVFTKTKLTASRLARQLVREG-IAADAIHGDKSQQERMQALEAFKQ--GKVTTL 306
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + VI F+ P DY+HR GRT R GA G SLV ++
Sbjct: 307 VATDVAARGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEEEKYLKE 366
Query: 314 IEEAIRKN 321
IE+ I++
Sbjct: 367 IEKLIKRE 374
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 18/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QVF K+ S H R+ GG +RPQ L ++++V TPGR+
Sbjct: 101 RALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQIAELKKGVEILVATPGRL 160
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E+ ++ + ++ LVLDEAD M D GF PD+ + L L + Q++L SA
Sbjct: 161 LDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLPAQR--------QSLLFSA 212
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS--GSENKLEALLQVLEPSLS 196
T ++ ++KL D + + + ++ + H +S G L LL+ E
Sbjct: 213 TFSEEIKKLADTMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTKLLKSGE---- 268
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +VFC T + L I HG+ ER++ L FK G+ L+
Sbjct: 269 -IRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKG--GETDALIA 325
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ D+ +VI ++ P DY+HR GRT R G KG SLV+ +V IE
Sbjct: 326 TDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVCYLVDIE 385
Query: 316 EAIRK 320
+ I++
Sbjct: 386 KLIKR 390
>gi|209878704|ref|XP_002140793.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209556399|gb|EEA06444.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 562
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 165/329 (50%), Gaps = 31/329 (9%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
+M+ + +PR P ++L PTREL EQ+ A + R R+T V GG R Q+
Sbjct: 205 SMVHISAQPRLRYGDGPICLILAPTRELVEQIREQANRFGNILRIRNTAVYGGVPKRSQQ 264
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
SL N +++ + PGR++ +E+G + YLVLDEAD M D GF P IRK + +
Sbjct: 265 ISLRNGVEICIACPGRLIDFLEEGCTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQI-- 322
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-----ARHD--- 173
+P+ QT+L SAT K VQKL + C R +H + S A H+
Sbjct: 323 ---RPDR---QTLLWSATWPKEVQKLARDLC------REEPVHINVGSIDTLKASHNIKQ 370
Query: 174 FIKLSGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232
+I + K L L + S +KV++FC T + + L + HG+
Sbjct: 371 YIDVVDEYQKKGRLRMFLNQVMNSPTSKVLIFCETKKGADILTRELRLEGWPALCIHGDK 430
Query: 233 PAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 291
+ER LN+F+N G P ++ TD+AARGLD+ D+ V+ +DFP DY+HR GRT
Sbjct: 431 KQEERTWVLNEFRN--GTSPIMIATDVAARGLDVKDITFVVNYDFPNQMEDYIHRIGRTG 488
Query: 292 RMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
R GA G S LA+ + +R+
Sbjct: 489 RAGASGVSLSFFTADKCRLANDLVRVLRE 517
>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 460
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGAR-KRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
Length = 798
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 494
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 495 ATFPKQIQELASDFLSNYTFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 550
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 551 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 608
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 609 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 667
>gi|440226777|ref|YP_007333868.1| ATP-dependent RNA helicase RhlE [Rhizobium tropici CIAT 899]
gi|440038288|gb|AGB71322.1| ATP-dependent RNA helicase RhlE [Rhizobium tropici CIAT 899]
Length = 505
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 150/308 (48%), Gaps = 15/308 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + R ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ V+DEAD M D GF PDI + L+P
Sbjct: 130 TPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + + + F+ G + + A L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVAKPASTAKTVTQRFVASHGKDYEKRATLRDL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L + S HG++ + R L F+ DG
Sbjct: 240 VRAQTDLKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFR--DGQI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLDL DV HV FD P++S DY+HR GRT R G G ++V K+D
Sbjct: 298 QLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTIVTKRDTKH 357
Query: 311 ADRIEEAI 318
D IE+ I
Sbjct: 358 VDAIEKLI 365
>gi|384420778|ref|YP_005630138.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353463691|gb|AEQ97970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 460
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGAR-KRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|384426420|ref|YP_005635777.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341935520|gb|AEL05659.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 462
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA-RKRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 170/305 (55%), Gaps = 18/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 120 RALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAELRRGVEILIATPGRL 179
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF PD+++ L L ++ QT+L SA
Sbjct: 180 LDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQR--------QTLLFSA 231
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++KL + + + + ++ R +++ +K A++Q++ K
Sbjct: 232 TFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVA-EPDKQAAVVQLIRQRELK- 289
Query: 199 NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V+VFCN+ + +SR + ++T HG+ ER++ L+ FK G+ LV T
Sbjct: 290 -QVIVFCNSKIGASRLAKQLERDGVVATA-IHGDRSQSERMQALDAFKR--GEIEALVAT 345
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIE 315
D+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + LAD IE
Sbjct: 346 DVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERKQLAD-IE 404
Query: 316 EAIRK 320
+ I++
Sbjct: 405 KLIKR 409
>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 491
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 161/305 (52%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL+ QV + S + RS V GG ++PQ + ++++V TPGR+
Sbjct: 79 RVLMLAPTRELAIQVHESVRGYSKYVPLRSACVYGGVDIKPQIAEIRLGVEVLVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L IE + +G ++ LVLDEAD M D GF PD+ + + L Q Q++L SA
Sbjct: 139 LDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLP--------QQRQSLLFSA 190
Query: 139 TMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T ++ ++KL D + I R +T+ + I H +E K L+++L
Sbjct: 191 TFSEEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPV----AAEAKRALLVKLLRS-- 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
S N+V+VF T + + L I+ + HG+ QER++ L FK DG LV
Sbjct: 245 SDFNQVLVFTRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFK--DGSVLVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+D + HVI F+ P DY+HR GRT R G G SLV+ +V I
Sbjct: 303 ATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLVSASEVPYLVDI 362
Query: 315 EEAIR 319
E+ IR
Sbjct: 363 EKLIR 367
>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
Length = 784
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 365 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 424
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 425 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 480
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 481 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 536
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 537 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 594
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 595 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 653
>gi|405382888|ref|ZP_11036664.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397320649|gb|EJJ25081.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 490
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 8 MLGVLMK----PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + R ++ GG Q+
Sbjct: 48 MLSLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEEQDRK 107
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 108 LERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 167
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+ SATM +QKL D Q + S ++ F+ +
Sbjct: 168 ----------QTLFFSATMPPEIQKLADRFLQNPERIEVSKPASASSTITQRFVASHDKD 217
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+ A L+ L + + ++FCN + L + S HG++ + R+ L
Sbjct: 218 YEKRATLRDLIRAQTDLKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRMAML 277
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
FK DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G G
Sbjct: 278 ANFK--DGNIQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASF 335
Query: 301 SLVAKKDVLLADRIEEAI 318
++V ++D AD IE+ I
Sbjct: 336 TIVTRRDQKHADAIEKLI 353
>gi|407771546|ref|ZP_11118901.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407285433|gb|EKF10934.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 653
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 152/304 (50%), Gaps = 14/304 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + ++ GG Q+ L D+++ TP
Sbjct: 71 RMPRSIILEPTRELATQVAANFDIYGKYMSLSKALIIGGESFVEQQKILEKGADVIIATP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ E G ++ D K LV+DEAD M D GF PDI K + L + QT+
Sbjct: 131 GRLIDTFERGKLLLSDCKLLVIDEADRMLDMGFIPDIEKIVNMLPKQR--------QTLF 182
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM K +++L D+ + S + H + + +K EAL +++
Sbjct: 183 FSATMPKEIRRLADKFLSNPKEITVSPPSTMATTVEHKLLVMD-EMDKREALRKLVRQED 241
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K VFCN + L ++ + HG++ ER E L+KFK G+ L+
Sbjct: 242 VKN--AFVFCNRKKDVDILFKSLTKHGFNAGRMHGDLVQSERTETLDKFKT--GEITLLI 297
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
C+D+AARG+D+ DV HV FD P N+ DY+HRTGRT R G GK L +D L I
Sbjct: 298 CSDVAARGIDVADVSHVFNFDVPFNAEDYVHRTGRTGRAGRAGKAFMLAVPEDGKLVAAI 357
Query: 315 EEAI 318
++I
Sbjct: 358 NKSI 361
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 158/302 (52%), Gaps = 20/302 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A+V+CPTREL+ QV ++ + R+ V GG + Q L + +V+GTPGRI
Sbjct: 73 QALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKKKVQIVIGTPGRI 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HIE + ++++VLDEAD M D GF DI L + + QT+L SA
Sbjct: 133 LDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENIL--------RETSEERQTMLFSA 184
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM + L + + +R + ++K+ + +K E L ++L+ SK
Sbjct: 185 TMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNA-DKSEVLSRILQLESSK- 242
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K ++FCNT + VD + + Q + HG++ Q+R LN+F+ +G L+
Sbjct: 243 -KAIIFCNT---KKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFR--EGQISMLI 296
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ DVD VI +D P+ Y+HR GRT R GA GK S +D+ RI
Sbjct: 297 ATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRI 356
Query: 315 EE 316
E+
Sbjct: 357 EK 358
>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
Length = 393
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 171/310 (55%), Gaps = 29/310 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPG 76
PRA+V+ PTREL+ Q+ + A +++ H + V GG +L Q L + +D+++ TPG
Sbjct: 89 PRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQRRKLRDEAVDLLIATPG 148
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+ ++ ++ LVLDEAD M D GF PD+++ + + + QT+L
Sbjct: 149 RLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIV--------RATPRERQTLLF 200
Query: 137 SATMTKAVQKLVDEECQ-------GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
SAT ++ ++ L + + HL T+ +++ ++ S ++ KL L+
Sbjct: 201 SATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRV------YMVESSAKRKL--LVN 252
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L+ S ++ +V+VFCN + +R++ LN + I GE+P Q+R++ L +F+ G
Sbjct: 253 LLKDSETR--RVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRR--G 308
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D LV TD+A RGL +D V HV+ ++ P + DY+HR GRT R GA G S + D
Sbjct: 309 DFRVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDS 368
Query: 309 LLADRIEEAI 318
L +E+ +
Sbjct: 369 FLIPELEKYL 378
>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 471
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + G + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
Length = 797
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 378 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 437
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 438 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 493
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 494 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 549
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 550 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 607
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 608 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 666
>gi|344344938|ref|ZP_08775796.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
gi|343803397|gb|EGV21305.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
Length = 533
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 10/303 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RPRA++L PTREL+ Q+ + A + H R + GG + Q D L +D+++GTPG
Sbjct: 87 RPRALILAPTRELAVQIHKDALVLGAHTGLRLGLAYGGTGYQKQRDELAAGVDILIGTPG 146
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ + + I+ +VLDEAD MFD GF DIR L R P + Q +L
Sbjct: 147 RLIDYFKQRVFDLRGIEVVVLDEADRMFDLGFIKDIRFLL----RRMPPPESR--QGLLF 200
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ V +L E ++ T + A ++ +E K+ L+ + L
Sbjct: 201 SATLSYRVTELAYEHMNQPRLIKIET-EQVTADRVRQCCYMTANEEKIPLLIGLARGWLE 259
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+++VF NT + V +L N I+T G+VP ++R+ L +F +G P LV
Sbjct: 260 GDARIIVFVNTKREADRVWGYLQGNGINTAVLSGDVPQKQRLRLLREFT--EGSLPVLVG 317
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + DV HV+ FD P + DY+HR GRTAR GA G V + IE
Sbjct: 318 TDVAARGLHIPDVTHVVNFDLPEDPEDYVHRVGRTARAGAAGDAVGFVCETYAFCLPDIE 377
Query: 316 EAI 318
I
Sbjct: 378 SFI 380
>gi|374704107|ref|ZP_09710977.1| DEAD/DEAH box helicase [Pseudomonas sp. S9]
Length = 443
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 155/303 (51%), Gaps = 14/303 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + ++ H RS V GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVQQSFQAYGQHLPLRSYAVYGGVSINPQMMKLRKGLDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ L + QT+L SA
Sbjct: 136 LDLYRQNAVKFNQLQVLVLDEADRMLDLGFARELDDLFSALPKKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A+++L E + + S + S + + + + K E L + + +
Sbjct: 188 TFSDAIRRLAGEMLRDPLSIEVSPRNAAAKSVKQWLVTVD-KKRKAELFLHLYK--TKRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T ++ L N IS HG+ P R+ L +FK G+ LV TD
Sbjct: 245 QQVLVFVKTRKGVDELEGELQRNGISADAIHGDKPQPTRLRALQRFKQ--GEVKVLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ D+ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIDDMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQAVSLVCADEVQLLAAIESM 362
Query: 318 IRK 320
I++
Sbjct: 363 IQQ 365
>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 564
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 156/310 (50%), Gaps = 20/310 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + K S FR+ +V GG + Q L +D++V TPG
Sbjct: 195 PLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQRSELRAGVDIMVATPG 254
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R + H++ GN I ++VLDEAD M D GF P IR+ L L R QT+L
Sbjct: 255 RFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLPER--------HQTLLF 306
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM + ++ L E ++ + A+ K+S SE K++ LL +L S
Sbjct: 307 SATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESE-KIDCLLGLLVEDAS 365
Query: 197 KGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + +VF + V L + V HG ER L+ F++ G
Sbjct: 366 QAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALHDFRS--G 423
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P DY+HR GRT R G+ G+ TS +D+
Sbjct: 424 STDILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQATSFYTDRDL 483
Query: 309 LLADRIEEAI 318
L +I++AI
Sbjct: 484 FLVAQIKKAI 493
>gi|407782169|ref|ZP_11129383.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407206339|gb|EKE76296.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 499
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 154/310 (49%), Gaps = 18/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR+++L PTREL+ QV + + + ++ GG QE ++ +D+++
Sbjct: 69 KARMPRSLILEPTRELAAQVAENFEKYGKYQKLNMALLIGGVSFADQEKKIDRGVDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H G ++ D+K LV+DEAD M D GF PDI + ++P R
Sbjct: 129 TPGRLLDHFGRGKILLQDVKILVIDEADRMLDMGFIPDIERIVGVLPKIRR--------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T+ SATM ++KL D+ + + A + + GS+ K EAL ++
Sbjct: 180 -TLFFSATMAPEIRKLADKFLMNPKEISVAK-QASTADTVAQHLVVVGSKAKREALRSLI 237
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
K +FCN + L ++ S V HG++ R E L KFKN +
Sbjct: 238 RSENVKN--AFIFCNRKRDIGTLQKSLVQHGFSAVALHGDMTQPARTETLAKFKN--NEV 293
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LVC+D+AARGLD+ V HV FD P N+ DY+HR GRT R G G+ ++ +D
Sbjct: 294 SLLVCSDVAARGLDIQAVSHVFNFDVPSNAEDYVHRIGRTGRAGMTGRAYTIATPEDAKY 353
Query: 311 ADRIEEAIRK 320
IE I K
Sbjct: 354 VAAIENLIGK 363
>gi|384251941|gb|EIE25418.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 589
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 152/287 (52%), Gaps = 22/287 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++Q+ V + A R+ GG PQ +L +D+VV TPGR
Sbjct: 247 PSMLVLAPTRELAQQIAAVLEEAGQSAGLRTLCAYGGVPKPPQTAALRQGVDVVVATPGR 306
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I DG + YLVLDEAD M D GF P IR + RA + QT++ S
Sbjct: 307 LEDLINDGACRLSGVTYLVLDEADRMLDLGFEPHIRA--IAGATRADR------QTLMFS 358
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH------DFIKLSGSENKLEALLQVL 191
AT A+QKL E IA + T+ + SA H + I + + +LE LL+
Sbjct: 359 ATWPPAIQKLASEFQASIARV---TIGSQDLSASHSVRQIVEVIDPAARDRRLEELLRKY 415
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S+ N+V+VF + V+ L++ + HG++ ++R E + +FK+ G
Sbjct: 416 HS--SRKNRVLVFVLYKKEAARVEAQLSKRGWNVRAIHGDINQRQRSEAVEQFKS--GKV 471
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
P L+ TD+AARGLD+ DV+ VI + FPL + DY+HR GRT R G G
Sbjct: 472 PLLIATDVAARGLDIPDVEAVINYSFPLTTEDYVHRIGRTGRAGKSG 518
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -SRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 91 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 150
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 151 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 200
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L+
Sbjct: 201 SATFSPEIKKLA---ASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLKQR 257
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G + +VF N+ + L I+ HG+ ER++ L FK G
Sbjct: 258 AEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQ--GTVD 315
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 316 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 375
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 376 ADIEKLIKRN 385
>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 586
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 161/329 (48%), Gaps = 24/329 (7%)
Query: 2 LRHDEAML----GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL 57
L HD+A+ G L R PRAVV+ PTREL QV R ++ T V GG
Sbjct: 107 LSHDKAVTVDEKGKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAY 166
Query: 58 RPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF-- 115
PQ +L +D+VVGTPGR+L G++V G +K LVLDEAD M D GF PD+ K
Sbjct: 167 EPQIKALQAGVDLVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLD 226
Query: 116 LVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT-STLHKKIASARHDF 174
LVP QT+L SATM + L H+R + + S F
Sbjct: 227 LVPTVK----------QTMLFSATMPGPILTLARTFMSRPMHIRAEAAAEGAMHSTTRQF 276
Query: 175 IKLSGSENKLEALLQVLEPSLSKGNKV-MVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233
+ + + +K+E L +VL+ ++G + MVF T ++ V L E + HG++
Sbjct: 277 VYRAHALDKVEMLARVLQ---ARGRGLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLG 333
Query: 234 AQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292
R + L F+ G LV TD+AARG+D+ DV HVI F P Y+HR GRT R
Sbjct: 334 QGAREQALRAFRA--GKVDVLVATDVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGR 391
Query: 293 MGAKGKVTSLVAKKDVLLADRIEEAIRKN 321
G G S + D+ I +A+ N
Sbjct: 392 AGKTGTAVSFIDWDDIPRWQLINQALELN 420
>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
Length = 460
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K+ + H RS +V GG ++ Q +L ++++V TPGR+
Sbjct: 92 RALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQTPTLMKGVEILVATPGRL 151
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + G ++ LVLDEAD M D GF PD+++ L L + Q ++ SA
Sbjct: 152 LDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLPKQR--------QNLMFSA 203
Query: 139 TMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL +E I R++ + + I L SE+K L +L
Sbjct: 204 TFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQK----ILLVESEHKQHVLADLLR--- 256
Query: 196 SKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +V+VF T L++SR H E I+ HG+ ER++ L+ FK G L
Sbjct: 257 KEATQVIVFTKTKLSASRLARHLEREG-IAAGAIHGDKSQLERIQALDAFKQ--GKITAL 313
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + V+ ++ P + DY+HR GRT R GA G SLV+ ++
Sbjct: 314 VATDVAARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLVSSEEEKFLKE 373
Query: 314 IEEAIRKN 321
IE+ I++
Sbjct: 374 IEKLIKRE 381
>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108872965|gb|EAT37190.1| AAEL010787-PA [Aedes aegypti]
gi|108872968|gb|EAT37193.1| AAEL010787-PD [Aedes aegypti]
Length = 594
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 19/305 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R P +VL PTREL++Q+ +VA + R+T + GG PQ L +++V+ TP
Sbjct: 190 RGPLVLVLAPTRELAQQIQQVATDFGSSSYIRNTCLFGGSSKGPQASDLRRGVEIVIATP 249
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ +E G + YLVLDEAD M D GF P IRK L + +P+ Q ++
Sbjct: 250 GRLIDFLETGTTTLQRVTYLVLDEADRMLDMGFEPQIRKILEQV-----RPD---RQILM 301
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD---FIKLSGSENKLEALLQVLE 192
SAT K VQ+L + + +L SA H+ ++K+ K E L ++L+
Sbjct: 302 WSATWPKEVQRLARDFLGDYVQINVGSLE---LSANHNITQYVKVIEEHEKNEQLGKLLD 358
Query: 193 PSLSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++G K+++F T + +L V HG+ QER LN+F+N +
Sbjct: 359 NLSARGPAGKILIFSTTKRKCDQITSYLRRYGQDAVGMHGDKSQQERERALNRFRNSN-S 417
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
C LV TD+AARGLD+D + VI +D+P + DY+HR GRT R A G+ + +
Sbjct: 418 C-ILVATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGEAYTFFTSNERK 476
Query: 310 LADRI 314
+A +
Sbjct: 477 MAKEL 481
>gi|344338704|ref|ZP_08769635.1| ATP-dependent RNA helicase rhlB [Thiocapsa marina 5811]
gi|343801286|gb|EGV19229.1| ATP-dependent RNA helicase rhlB [Thiocapsa marina 5811]
Length = 529
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 161/308 (52%), Gaps = 22/308 (7%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RPRA++L PTREL+ Q+ R + ++ H R +V GG + Q D + ID+++GTPG
Sbjct: 84 RPRALILAPTRELAVQIHRDTELLATHTGLRIAVVYGGAGYQEQRDRVAGGIDILIGTPG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL---VPLKNRASKPNGQGFQT 133
R++ + + I+ +VLDEAD MFD GF DIR L P +NR Q
Sbjct: 144 RLIDYFKQKVFDLQAIEAVVLDEADRMFDLGFIKDIRFLLRRMPPPENR---------QG 194
Query: 134 VLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
+L SAT++ V +L E + + T T+ A ++ +E K+ LL ++
Sbjct: 195 LLFSATLSYRVTELAYEHMNHPQLVKIETETI---TADRVRQCCYMTSNEEKIALLLGLV 251
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ ++MVF NT + V FL N I+T G+VP ++R++ L F DG
Sbjct: 252 R--GWEDARIMVFVNTKREADRVWGFLQGNGINTAVLSGDVPQKKRLKLLKDFT--DGKL 307
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P LV TD+AARGL + DV HV+ +D P + DY+HR GRTAR GA G V +
Sbjct: 308 PVLVGTDVAARGLHIPDVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAIGFVCETYAFC 367
Query: 311 ADRIEEAI 318
IE I
Sbjct: 368 LPDIEAFI 375
>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Xenopus (Silurana)
tropicalis]
gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
tropicalis]
gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
tropicalis]
Length = 609
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R RST + GG PQ L +++ + TPGR
Sbjct: 166 PILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 226 LIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ N K E L++++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYVHINIGALE---LSANHNILQIVDVCNDGEKDEKLVRLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + L + + HG+ QER LN+FK+ G P
Sbjct: 335 MSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKSPI 392
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNI 448
>gi|254491606|ref|ZP_05104785.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463084|gb|EEF79354.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 415
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
++PRA++L PTREL+ Q+ + A+ ++ A R + GG + Q D++ +D+++GTP
Sbjct: 60 KQPRALILAPTRELAIQIAKDAELLNVEAGLRIAIAHGGKDYQRQRDNITEGVDVLIGTP 119
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L + + G I +VLDEAD MFD GF D+R FL R KP + +L
Sbjct: 120 GRLLDYQKQGVFSLKFIDAMVLDEADRMFDLGFIKDVRYFL----RRIPKPEKR--LGML 173
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT++ V +L E ++ + K + +++ ++ K+ LL ++E
Sbjct: 174 FSATLSYKVSELAYEHMNNPEKVQVAP-EKMMGDRIEEWVYYPANDEKVPLLLALIE--R 230
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ + ++F NT ++ V +L N+ G+VP ++R + L F +DG+ P LV
Sbjct: 231 LQPERGIIFVNTKQAADVVWGYLEGNEHKAALLSGDVPQKKREQLLKHF--QDGEFPFLV 288
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGL + V HV +D P + DY+HRTGRTAR GA G S ++ V I
Sbjct: 289 ATDVAARGLHIPAVTHVFNYDLPQDVEDYVHRTGRTARAGASGVAISFACEEFVFSLPEI 348
Query: 315 EEAIR 319
E+ I+
Sbjct: 349 EDYIK 353
>gi|399888651|ref|ZP_10774528.1| RNA helicase [Clostridium arbusti SL206]
Length = 523
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 167/311 (53%), Gaps = 21/311 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A++L PTREL+ Q++ K +S H + RS + GG + Q +L + +VVG
Sbjct: 69 KQKSIQALILTPTRELAIQIYEELKRLSTHDKARSLPIYGGQSMDKQISALRKDVSIVVG 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L HI + GD+KYLVLDEAD M + GF DI + + N +K QT
Sbjct: 129 TPGRVLDHIRRKTLKLGDLKYLVLDEADEMLNMGFIDDIEEII----NNTNKER----QT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD-FIKLSGSENKLEALLQVL- 191
+L SATM + ++KL ++ + L L K + ++ D + + +LEAL ++L
Sbjct: 181 LLFSATMPRPIKKLAEKYLKKDVKL-IQILKKSMTVSKIDQYFYEVHNNARLEALCRILD 239
Query: 192 --EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
EP + ++FC T + + + + HG++ +R+ L+KFK+ G
Sbjct: 240 TEEPECA-----IIFCKTKKNVDELVSTMGSKGYNIEGMHGDMKQSQRLSTLSKFKH--G 292
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L TD+AARG+D++ + HVI ++ P ++ Y+HR GRT R G SL+ KK+
Sbjct: 293 KLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGRANKSGTAISLITKKEF 352
Query: 309 LLADRIEEAIR 319
+IE I+
Sbjct: 353 SKLKQIERDIK 363
>gi|440804129|gb|ELR25007.1| DEAD/DEAH box helicase domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 597
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 168/311 (54%), Gaps = 19/311 (6%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P A+VL PTREL+ Q+++ A S++ R+ +V GG + Q + ++++V TPG
Sbjct: 232 QPHALVLAPTRELASQIYKEACKFSYYGPLRAAVVYGGADIYQQLREIERGVEILVATPG 291
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ +E + +I+YL+LDEAD M D GF P IR+ + + P + QT+L
Sbjct: 292 RLVDLMERARVSLANIRYLILDEADRMLDMGFEPQIRRIV----EQEDMPRTEDRQTLLF 347
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI--KLSGSE--NKLEALLQVLE 192
SAT +Q+L + LR + + DFI KL E +K A+L++L
Sbjct: 348 SATFPVEIQRLASDFLNDWIFLRVGRV-----GSTTDFISQKLMYVEDRDKTNAVLELL- 401
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ +G ++F T + +++FL + HG+ +ER L F++ G P
Sbjct: 402 -AEVRG-LTLIFVQTKRGADQLENFLYREGFPVASIHGDRTQREREAALTSFRS--GRTP 457
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ +V HVI +D P N DY+HR GRT R G G T+ V+++D +
Sbjct: 458 ILVATDVAARGLDIPNVLHVINYDLPTNIDDYVHRIGRTGRAGNTGLTTAFVSERDANIL 517
Query: 312 DRIEEAIRKNE 322
+ + +R+ E
Sbjct: 518 PDLLDILREAE 528
>gi|17985987|ref|NP_536783.1| belle, isoform A [Drosophila melanogaster]
gi|74947986|sp|Q9VHP0.1|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
belle
gi|7299061|gb|AAF54262.1| belle, isoform A [Drosophila melanogaster]
Length = 798
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 494
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 495 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 550
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 551 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 608
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 609 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 667
>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
nagariensis]
gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
nagariensis]
Length = 481
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 162/306 (52%), Gaps = 23/306 (7%)
Query: 1 LLRHDEAML--GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR 58
+LRH A GV+ + P A+V+ PTREL+ Q+ +V + R+ V GG
Sbjct: 121 MLRHIAAQRDNGVVSG-KGPFAIVMAPTRELALQINQVLEEAGSQCSVRTVCVYGGVPKG 179
Query: 59 PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVP 118
PQ +L + +++VVGTPGR+ + DG + + Y VLDEAD M D GF P IR +
Sbjct: 180 PQVAALKSGVEVVVGTPGRMEDLLNDGVLQLKKVTYAVLDEADRMLDLGFEPHIRAIMG- 238
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH------ 172
RA + QT++ SAT AVQKL ++H T+ + +A H
Sbjct: 239 -LTRADR------QTLMFSATWPAAVQKLA---IAFLSHPVKVTIGSQDLAASHSITQRV 288
Query: 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232
D I + + +L LLQ + + N+V++F + V+ L+ V HG++
Sbjct: 289 DVIDPNARDGRLLELLQQYHGAKGRKNRVIIFVLYKKEAPRVEQLLSRKGWKAVAIHGDI 348
Query: 233 PAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 291
Q+R + ++KFK+ G P L+ TD+AARGLD+ DV+ VI + FPL + DY+HR GRT
Sbjct: 349 SQQQRTDAVDKFKS--GVVPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG 406
Query: 292 RMGAKG 297
R G G
Sbjct: 407 RAGKTG 412
>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
Length = 498
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 15/303 (4%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA+++ PTREL+ Q+ + + R+ +V GG + PQ +L ++++V T
Sbjct: 79 RHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVAT 138
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L +E + + + LVLDEAD M D GF PDI++ + L + Q++
Sbjct: 139 PGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQR--------QSL 190
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
+ SAT + ++KL D + + + + S H I ++K LL ++
Sbjct: 191 MFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISH-VIHWVKPDSKFALLLHLIRQQ 249
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K + ++F T + + + L+ ++IS V HG+ Q+R + L +FK+ GD L
Sbjct: 250 NLK--QALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKH--GDVQIL 305
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D++ + HVI ++ P N DY+HR GRT R G+KGK SLV++ + L
Sbjct: 306 VATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKELLAN 365
Query: 314 IEE 316
IE+
Sbjct: 366 IEK 368
>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
gi|74657087|sp|Q5B0J9.1|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
nidulans FGSC A4]
Length = 563
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 273
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 274 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPD---RQTCMWS 325
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + ++ SA H +++ K + +++ LE
Sbjct: 326 ATWPKEVRQLASDFLNNYIQVNIGSMD---LSANHRITQIVEVISEFEKRDRMIKHLEKI 382
Query: 195 L-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++GNK +VF T + + FL ++ ++ HG+ QER LN+FK G P
Sbjct: 383 MENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GKSPI 440
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
+V TD+A+RG+D+ D+ HVI +D+P NS DY+HR GRT R GAKG +
Sbjct: 441 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITF 490
>gi|442618017|ref|NP_001262379.1| belle, isoform B [Drosophila melanogaster]
gi|440217205|gb|AGB95761.1| belle, isoform B [Drosophila melanogaster]
Length = 801
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 494
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 495 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 550
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 551 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 608
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 609 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 667
>gi|359397178|ref|ZP_09190228.1| ATP-dependent RNA helicase rhlB [Halomonas boliviensis LC1]
gi|357968972|gb|EHJ91421.1| ATP-dependent RNA helicase rhlB [Halomonas boliviensis LC1]
Length = 424
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 158/306 (51%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PRA+++ PTREL+ Q+ + AK+++ V GG + Q +SL + ID++V
Sbjct: 116 KPGAPRALIIAPTRELALQIEKDAKALARFTPLNVASVVGGMDYQKQRESLGSKIDILVA 175
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L + ++ +++ LVLDEAD M GF PD+++ + P + QT
Sbjct: 176 TPGRLLDFHQKRDIDLNEVEVLVLDEADRMLSMGFIPDVKRII------RYTPKKEERQT 229
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT T + L + AH+ + A + L ++K L+ +L+
Sbjct: 230 FLFSATFTDDILNLASQWTLDPAHVEIEVTVENQADIDQR-VYLVSDDDKQRLLVNLLQQ 288
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+VMVF N + R +D L + +S G+VP +R++ L F+ +G+
Sbjct: 289 --ESFERVMVFGNRRDLVRKLDDLLKKAGVSAAMLSGDVPQNQRIKTLESFR--EGEIQV 344
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A RG+ + DV HVI + P + DY+HR GRT R GAKG S V ++D
Sbjct: 345 LVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLP 404
Query: 313 RIEEAI 318
IE I
Sbjct: 405 EIERYI 410
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL+ QV K+ + R V GG + PQ L ++++V TPGR+
Sbjct: 79 RTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRAGVEILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ L+LDEAD M D GF PDI++ L L ++ Q+++ SA
Sbjct: 139 LDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLPSQR--------QSLMFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL + E + R +T+ + I H ++ E K E L +++
Sbjct: 191 TFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVR----ERKRELLAHLIKS-- 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + H L + IS HG+ +R E L KFK G LV
Sbjct: 245 QDLQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQ--GVVRVLV 302
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ ++ HV+ F+ P N DY+HR GRT R G KG SLV + + L I
Sbjct: 303 ATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAELLKGI 362
Query: 315 EEAIR 319
E+ ++
Sbjct: 363 EKLLK 367
>gi|358335904|dbj|GAA39366.2| ATP-dependent RNA helicase DDX3X, partial [Clonorchis sinensis]
Length = 941
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 9/306 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q+F A+ ++ + R +V GG + Q L + D++V TPGR
Sbjct: 234 PVALVLAPTRELSCQIFDEARKFAYQSDVRPCVVYGGASIFLQVRELQHGCDLLVATPGR 293
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ I GN+ +KYLVLDEAD M D GF P IR+ +V L P GQ QT++ S
Sbjct: 294 LVDMISRGNVSLDHVKYLVLDEADRMLDMGFEPQIRR-IVELHRM--PPAGQ-RQTLMFS 349
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + L + + + ++ ++K E L+++L+ +
Sbjct: 350 ATFPKEIQTLARDFLHSYIFLAVGRVGSTNENITQEVWNVA-DKDKPELLVRLLQQKDPE 408
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G V+VF T + + FL + + HG+ P ER L+ F+ DG P L+ T
Sbjct: 409 G-LVLVFVETKRGADLLAKFLGQLNFPVTSIHGDRPQAERENALSSFR--DGLTPILIAT 465
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
+AARGLD+ +V HVI FD P + +Y+HR GRT RMG G TS + ++ + + E
Sbjct: 466 AVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSATSFFSDRNQNVVRDLVE 525
Query: 317 AIRKNE 322
+R+++
Sbjct: 526 LLRESK 531
>gi|225434327|ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [Vitis vinifera]
gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 153/310 (49%), Gaps = 20/310 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+VL PTREL++Q+ + K+ S FR+ +V GG + Q L +++VV TPG
Sbjct: 197 PLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAGVNIVVATPG 256
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R + H+++GN I ++VLDEAD M D GF P IR+ + L Q QT+L
Sbjct: 257 RFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLP--------QKHQTLLF 308
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM ++ L E ++ + A+ K+S SE K++ LL +L S
Sbjct: 309 SATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESE-KIDGLLALLVEEAS 367
Query: 197 KGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + +VF V L + V HG ER L F+N G
Sbjct: 368 QAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFRN--G 425
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ V HVI D P +Y+HR GRT R G+ G+ TS +DV
Sbjct: 426 ATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFYTDRDV 485
Query: 309 LLADRIEEAI 318
L I +AI
Sbjct: 486 FLVAHIRKAI 495
>gi|443468655|ref|ZP_21058862.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes KF707]
gi|442897874|gb|ELS24691.1| ATP-dependent RNA helicase [Pseudomonas pseudoalcaligenes KF707]
Length = 439
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 159/308 (51%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R V GG + PQ L ID++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVNESFRVYGQHLPLRHYAVYGGVSINPQMMKLRKGIDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + +G ++ LVLDEAD M D GF ++ + V L R QT+L SA
Sbjct: 136 LDLYRQNAVKFGQLQALVLDEADRMLDLGFSRELDELFVALPRRR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++++ E + + S + S I + + K E L +LE +G
Sbjct: 188 TFSDAIRQMARELLRDPLSIEVSPRNAAARSVSQWLIPVD-KKRKSELFLHLLE---DRG 243
Query: 199 -NKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+V+VF T + VD ++E Q ++ + HG+ P R+ L +FK G+ L
Sbjct: 244 WGQVLVFAKT---RKGVDQLVDELQARGLAADSIHGDKPQPSRLRALQRFKA--GEVQVL 298
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ D+ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L
Sbjct: 299 VATDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVCADEVQLLSA 358
Query: 314 IEEAIRKN 321
IE R+
Sbjct: 359 IEVLTRQT 366
>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
Length = 502
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 11/301 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+ +V+ PTREL+ Q++ A+ + R +V GG + Q + + ++VVGTP
Sbjct: 133 QEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQLRQVESGANLVVGTP 192
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L IE G + +K+L+LDEAD M D GF P IRK + L P+ QT++
Sbjct: 193 GRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESL----GMPSKSERQTLM 248
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT +Q+L + + + + F+++ + K E L +L S
Sbjct: 249 FSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQ-KREYLCDILNSSG 307
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ N+V+VF ++ + FL+++ T + HG+ +ER E L FK G P L+
Sbjct: 308 T--NRVLVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFKR--GKSPVLI 363
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLADR 313
T++AARGLD+ DV HV+ +D P + +Y+HR GRT R G GK TS ++ D LA
Sbjct: 364 ATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQDTDFALASS 423
Query: 314 I 314
+
Sbjct: 424 L 424
>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
yFS275]
gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
yFS275]
Length = 553
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 154/292 (52%), Gaps = 12/292 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + H +R R+T V GG PQ L +++ + TPGR
Sbjct: 200 PIVLVLAPTRELAVQIQQECTKFGHTSRIRNTCVYGGVPRGPQIRDLARGVEICIATPGR 259
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L ++ G + YLVLDEAD M D GF P IRK + + +P+ QTV+ S
Sbjct: 260 LLDMLDSGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTVMFS 311
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K VQ+L + + + +L + +++ +K L + LE ++
Sbjct: 312 ATWPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPADKRARLSKDLEKAMED 371
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K +KV+VF T + + FL ++ + HG+ ER LN+F+ G P +V
Sbjct: 372 KESKVLVFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT--GKSPIMVA 429
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
TD+A+RG+D+ + HV FDFP N+ DY+HR GRT R GAKG + +++
Sbjct: 430 TDVASRGIDVKGITHVFNFDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTQEN 481
>gi|452211065|ref|YP_007491179.1| ATP-dependent RNA helicase [Methanosarcina mazei Tuc01]
gi|452100967|gb|AGF97907.1| ATP-dependent RNA helicase [Methanosarcina mazei Tuc01]
Length = 389
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 155/296 (52%), Gaps = 28/296 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A++L PTREL+EQV + S + + GG + Q L N ++VVGTPGR+
Sbjct: 58 QALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKELKNA-EVVVGTPGRL 116
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI + ++K LVLDEAD MFD GF D+ K + K Q QT+L SA
Sbjct: 117 LDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKII--------KECPQNRQTLLFSA 168
Query: 139 TMTKAVQKLVDEECQGIAHLRTST------LHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+TK + +L + + + T + L++ + + D KL L+ +L+
Sbjct: 169 TITKDIVQLSRKYMKNPVRVSTESYIDPQKLNQVVYKVQDDM--------KLSLLVYLLQ 220
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
K N MVFCNT ++ V L ++ I+ V HG + ER + KF G+
Sbjct: 221 N--EKSNLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRIMEKF--HSGNIG 276
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LVCTD+A RGLD+ V HV +D P S Y+HR GRTAR G +GK ++++K D
Sbjct: 277 VLVCTDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKND 332
>gi|393762428|ref|ZP_10351055.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392606663|gb|EIW89547.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 430
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 169/312 (54%), Gaps = 30/312 (9%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVV 72
RRPRA++L PTREL+EQ +A +IS +A+F T + GG ++ Q L N +D+VV
Sbjct: 73 RRPRALILTPTRELAEQ---IANAISAYAQFLPLSVTAIYGGVKMGGQASKLQNGVDIVV 129
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+++H+ GN++ D+ ++VLDEAD M D GF D+ K + + Q
Sbjct: 130 STPGRLIEHMALGNVILSDVAFVVLDEADRMLDMGFSTDVLKLV--------EMTAASRQ 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT + AV +L + + +R + + + H + S +++ E
Sbjct: 182 TLLFSATTSPAVNELSHKILKNHQQIRVAKTNSTADTVEHVVYPVEESRK-----IELFE 236
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNY---HGEVPAQERVENLNKFKNE 247
L++ N +V+VF +T + D L + Q + VN H + R L FK+
Sbjct: 237 QLLAEHNWFQVLVFTSTKEQA---DRLLADLQKAKVNAAVCHADKSQGSRRRALADFKS- 292
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
L+ T++AARGLD+ +D+V+ F+ P DY+HR GRT R GAKG+ S V+++
Sbjct: 293 -AKLQVLIATEVAARGLDIQGLDYVVNFNLPYLPEDYVHRIGRTGRAGAKGQAISFVSRE 351
Query: 307 DVLLADRIEEAI 318
+ +RI++ I
Sbjct: 352 EEQSLERIQKLI 363
>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
Length = 1201
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 163/326 (50%), Gaps = 27/326 (8%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P ++L PTREL++Q+ VA S A R+T + GG PQ
Sbjct: 170 AIVHIIHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAAVRNTCIFGGAPKGPQA 229
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L I++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 230 HDLEKGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 287
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---- 177
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ ++
Sbjct: 288 ---RPD---RQVLMWSATWPKEVRALAEDFLTDYIHLNIGSL---TLSANHNITQIIDVC 338
Query: 178 --SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
+ KL LLQ E K NK ++F T + + V+ HG+ Q
Sbjct: 339 QEYEKDLKLYRLLQ--EIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQ 396
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
ER L +F+N G P LV TD+AARGLD+ DV +VI FDFP +S DY+HR GRT R
Sbjct: 397 ERDHVLQEFRN--GKAPILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKR 454
Query: 295 AKGKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 455 QTGTAYAFFTTHNMKHAGDLIEVLRE 480
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 148/292 (50%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL++Q+ +VA ++ R+T + GG PQ L +++ + TPGR
Sbjct: 779 PIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDLERGVEICIATPGR 838
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 839 LIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQI-----RPD---RQTLMWS 890
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L +E + +L +A H+ +++ E+KL LL+
Sbjct: 891 ATWPKEVRNLAEEFLTDYIQINIGSLQ---LAANHNILQIVDVCEEYEKESKLMKLLE-- 945
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E S NK ++F T + +N + HG+ QER LN+F+N
Sbjct: 946 EISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNS--RS 1003
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
LV TD+AARGLD+ DV VI D+P NS DY+HR GRT R G +
Sbjct: 1004 AILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAF 1055
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
Length = 679
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 11/299 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A+V+ PTREL+ Q+ A ++ R + GG ++ Q L+ +++V TPGR
Sbjct: 378 PQALVITPTRELALQIHHEALKFAYSTILRPVVCYGGTSVQHQLRELSRGCNLLVATPGR 437
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L + G + G +KYL+LDEAD M D GF P+IR+ LV N SK + QT++ S
Sbjct: 438 LLDFVGKGKVGLGKLKYLILDEADRMLDMGFEPEIRR-LVASPNMPSK---EDRQTLMFS 493
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL---EPS 194
AT + +QKL + L + +++ K E L+++L S
Sbjct: 494 ATFPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKKEKLMEILIDVISS 553
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
KV+VF T S+ V +L+++ T + HG+ +ER E L+ FK G+ P L
Sbjct: 554 FPGTEKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREEALSCFKR--GETPVL 611
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLA 311
V T +AARGLD+ V HV+ FD P N +Y+HR GRT R+G GK S +D LA
Sbjct: 612 VATSVAARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAVSFFDNDRDTALA 670
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 21/309 (6%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA++L PTREL++QV K+ H RST+V GG + PQ +L + I++V+ T
Sbjct: 102 RHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGVDIAPQTAALRSGIEIVIAT 161
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQ 132
PGR+L H++ + + LV+DEAD M D GF PD+++ L+P K R Q
Sbjct: 162 PGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP-KER---------Q 211
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
++ SAT + ++KL + + + + + ++ + K EA+ ++
Sbjct: 212 NLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTMYHVN-EQTKAEAVSYIIR 270
Query: 193 PSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
K +V+VF NT + +S+ H NE ++ HG+ ER+ L FK G+
Sbjct: 271 ERNLK--QVIVFSNTKIGASKLARHLENEG-VNASAIHGDKTQNERMAALEAFKR--GEI 325
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL A KD L
Sbjct: 326 EVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLYADKDERL 385
Query: 311 ADRIEEAIR 319
IE+ I+
Sbjct: 386 LVDIEKMIK 394
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 222 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -ERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEVEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L R Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNN--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
gi|391864909|gb|EIT74201.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 556
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 206 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 265
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 266 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 317
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 318 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 376
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++GNK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 377 -----NRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 429
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 430 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 482
>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
Length = 792
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 374 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 433
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 434 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 489
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 490 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 545
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 546 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 603
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 604 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 662
>gi|345493218|ref|XP_001605403.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nasonia
vitripennis]
Length = 574
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 151/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + ++T + GG Q L+N +++V+ TPGR
Sbjct: 183 PIALVLAPTRELAQQIQQVADDFGHSSGIKNTCLYGGAPKGSQARDLDNGVEIVIATPGR 242
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 243 LLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 294
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L +E + A + +L SA H+ +++ E KL LL+
Sbjct: 295 ATWPKEVKNLAEEFLKDYAQINVGSLQ---LSANHNILQIIDVCQEYEKEIKLSTLLK-- 349
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E K NK +VF T + + + V HG+ QER L F++ G
Sbjct: 350 EIMAEKENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 407
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 408 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 459
>gi|421472538|ref|ZP_15920727.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400222909|gb|EJO53257.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 407
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L R Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKN--NTLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
[Tribolium castaneum]
Length = 540
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 152/298 (51%), Gaps = 22/298 (7%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L++ P A+VL PTREL++Q+ +VA ++ R+T V GG PQ + L + +++V
Sbjct: 159 LLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDLMDGVEIV 218
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
+ TPGR++ +E YLVLDEAD M D GF P IRK + + +P+
Sbjct: 219 IATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR--- 270
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLE 185
QT++ SAT K VQ L E + + +L SA H+ +++ E KL
Sbjct: 271 QTLMWSATWPKEVQALAAEFLKDYIQINVGSLQ---LSANHNILQIIDVCQEYEKETKLS 327
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
LL+ E K NK ++F T + + + V HG+ QER L F+
Sbjct: 328 TLLK--EIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFR 385
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
G P LV TD+AARGLD+ DV VI FD+P NS DY+HR GRT R G +
Sbjct: 386 T--GKAPILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTF 441
>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
Length = 574
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 152/298 (51%), Gaps = 22/298 (7%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L++ P A+VL PTREL++Q+ +VA ++ R+T V GG PQ + L + +++V
Sbjct: 199 LLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQANDLMDGVEIV 258
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
+ TPGR++ +E YLVLDEAD M D GF P IRK + + +P+
Sbjct: 259 IATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR--- 310
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLE 185
QT++ SAT K VQ L E + + +L SA H+ +++ E KL
Sbjct: 311 QTLMWSATWPKEVQALAAEFLKDYIQINVGSLQ---LSANHNILQIIDVCQEYEKETKLS 367
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
LL+ E K NK ++F T + + + V HG+ QER L F+
Sbjct: 368 TLLK--EIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFR 425
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
G P LV TD+AARGLD+ DV VI FD+P NS DY+HR GRT R G +
Sbjct: 426 T--GKAPILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTF 481
>gi|91206538|sp|Q2U070.1|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 554
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 204 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 263
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 264 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 315
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 316 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 374
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++GNK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 375 -----NRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 427
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 428 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 480
>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
Hxd3]
Length = 464
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 160/310 (51%), Gaps = 15/310 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVV 72
KP PRA+VL PTREL Q+ A+ ++ H V GG + Q+D L P+D++V
Sbjct: 126 KPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDRLTREPVDIIV 185
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+L ++ ++ LV+DEAD M D GF PD+RK + + P Q
Sbjct: 186 ATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIY------ATPQKGNRQ 239
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL- 191
T+L SAT+T+A+ +L + + H + S + + S+ KL L ++
Sbjct: 240 TLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVDQ-VVYIVTSDRKLALLYNIIV 298
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ +LS +V+VFCN ++ + L I G+VP Q+R L FK+ G
Sbjct: 299 QQNLS---RVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKS--GKI 353
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+ ARG+ + D+DHV+ FD P + DY+HR GRT R GA G S ++D
Sbjct: 354 RVLVATDVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSISFADERDSFY 413
Query: 311 ADRIEEAIRK 320
IE+ + +
Sbjct: 414 IPDIEDFMER 423
>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Diplosphaera
colitermitum TAV2]
gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Diplosphaera
colitermitum TAV2]
Length = 536
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 153/304 (50%), Gaps = 14/304 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
RR R +VL PTREL+ QV + S + +T+V GG Q + L +D+V TP
Sbjct: 200 RRLRCLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRGVDVVAATP 259
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L HIE G M D++ LVLDE D M D GF PD+++ + + Q QT+
Sbjct: 260 GRLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIV--------QQCPQARQTLF 311
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT+ + +L + ++ + H F + S+ K + L+ +L S
Sbjct: 312 FSATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQ-KFDLLIDLL--SR 368
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
++ V++F T + + H L + H + +ERVE L FK+ G LV
Sbjct: 369 TEFKSVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKS--GKFEVLV 426
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V HVI +D P N DY+HR GRT R A G +LV + DV A I
Sbjct: 427 ATDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSI 486
Query: 315 EEAI 318
E I
Sbjct: 487 ERYI 490
>gi|421477647|ref|ZP_15925459.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
gi|400226180|gb|EJO56273.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
Length = 414
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L R Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKN--NTLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
gi|134034066|sp|A1DGZ7.1|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
Length = 545
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 24/298 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 193 PIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 252
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 253 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPD---RQTCMWS 304
Query: 138 ATMTKAVQKLV-----DEECQGIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L D I + S H+ +I DF K LE +++
Sbjct: 305 ATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 363
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++GNK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 364 -----NRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 416
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG + ++
Sbjct: 417 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 474
>gi|358365783|dbj|GAA82405.1| RNA helicase Dbp [Aspergillus kawachii IFO 4308]
Length = 558
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 153/293 (52%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 208 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 267
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 268 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 319
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 320 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 378
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++GNK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 379 -----NRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 431
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 432 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 484
>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 462
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 163/301 (54%), Gaps = 13/301 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S ++ GG + Q D+L +D+++
Sbjct: 73 PRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIAC 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ HIE ++ I+ L+LDEAD M D GF P I++ L L Q QT+
Sbjct: 133 PGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR-------QDRQTL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT + +++L E + ++ + + S H + G+ K + LL +L +
Sbjct: 186 LFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGA-RKRDLLLHLL--A 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + S + FL ++ I T HG +R+ L+ FK G L
Sbjct: 243 QDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKA--GRVTVL 300
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+ ++ VI +D P+ + DY+HR GRT R G+ G+ SLVA+ + L +
Sbjct: 301 VATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360
Query: 314 I 314
I
Sbjct: 361 I 361
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ + L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + ++ + +K A+++++
Sbjct: 222 ATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAE----GDKTGAVVKLIR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -ERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKR--GEVEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
Length = 441
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 157/309 (50%), Gaps = 22/309 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA++L PTREL+ Q+ + ++ S H R T V GG + Q +++ +D+V+ TPGR
Sbjct: 74 PRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQIETIQAGVDIVIATPGR 133
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
+L +V DI LV+DEAD M D GF P I + L +P+K Q +L
Sbjct: 134 LLDLYSREELVLKDINTLVMDEADKMMDMGFMPQINRILEIIPVKR----------QNLL 183
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM + VQKL ++ + + + + + + K+ L L
Sbjct: 184 FSATMPEKVQKLSEDFLEFPEFVEVTPQATTAETVEQVLFETPNIKTKINLLYHFLADE- 242
Query: 196 SKGNKVMVFCNTLNSSRAVDHFL----NENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+VM+F T ++ +V FL +E+Q+ + H R+ ++N FK+ GD
Sbjct: 243 ETFKRVMIFTRTRKNADSVYKFLARKFSEDQVRVI--HANKGQNTRINSMNAFKS--GDI 298
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+ ARG+D+ V HVI FD PL DY+HR GRT R GK S + + DV
Sbjct: 299 RILVGTDVVARGIDVTLVSHVINFDIPLIYEDYVHRIGRTGRAMQSGKAISFITEADVYH 358
Query: 311 ADRIEEAIR 319
+IE+ IR
Sbjct: 359 MKKIEQIIR 367
>gi|387130187|ref|YP_006293077.1| ATP-dependent RNA helicase RhlB [Methylophaga sp. JAM7]
gi|386271476|gb|AFJ02390.1| ATP-dependent RNA helicase RhlB [Methylophaga sp. JAM7]
Length = 462
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 171/311 (54%), Gaps = 18/311 (5%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ P++PRA++L PTREL+ Q+ + A ++ +A R + GG + Q D++ DM++
Sbjct: 103 IDPQQPRALILAPTRELAIQIAKDAALLNKYANLRIALAHGGKDYQKQRDAIAAGCDMLI 162
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGR+L + + I+ +VLDEAD MFD GF D+R FL R KP+ +
Sbjct: 163 GTPGRLLDYHKQRVFDLRQIQAVVLDEADRMFDLGFIKDVRYFL----RRIPKPSKR--L 216
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVL 191
+L SAT++ V +L E ++ + +K+A+ R + + ++ K+ LL ++
Sbjct: 217 GMLFSATLSYKVLELAYEHMNNPEKVQIAP--EKVAADRIEETVYYPANDEKIPLLLALI 274
Query: 192 EPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + N + +VF NT +++ V FL N G+VP ++R L F +DG
Sbjct: 275 K----RINPLRSIVFVNTKHTADLVWGFLEGNGHKAALLSGDVPQKKRERLLTHF--QDG 328
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ P LV TD+AARGL + +V HV +D P +S DY+HR GRTAR GA G S ++ V
Sbjct: 329 EFPFLVATDVAARGLHIPEVSHVFNYDLPQDSEDYVHRIGRTARAGASGTAISFACEEYV 388
Query: 309 LLADRIEEAIR 319
IE I+
Sbjct: 389 FSLPDIERYIK 399
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 163 RALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 222
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 223 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 273
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 274 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKHSAVVQLLR-- 327
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 328 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 384
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 385 LVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 444
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 445 DIEKLIKR 452
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -GRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 156/287 (54%), Gaps = 14/287 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL+EQ+ + + + R++++ GG Q+ L D+V+ TPGR+
Sbjct: 82 RMLVLTPTRELAEQISKNVIAYADGLPLRTSLIYGGVDFNAQKLELMRGADIVIATPGRL 141
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + +++L+LDEAD M D GF PD+ K L L +R Q++L SA
Sbjct: 142 LDHVEQRTINLNQVEFLILDEADRMLDMGFMPDLLKILAQLPSRR--------QSLLYSA 193
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++ L + + ++ + ++ + +S +E K ALL +L +
Sbjct: 194 TFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAE-KNAALLYLL--ASRNF 250
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
N V++F N + + ++ +LN +S + HG+ ER + LN FK+ C LV TD
Sbjct: 251 NNVIIFSNRKITCKNLERYLNNLDLSAQSLHGDKTQSERTKALNLFKS--AKCNILVATD 308
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+AARGLD+ DVD VI ++ P S DY+HR GRT R G KG S+ +
Sbjct: 309 VAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYS 355
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 161/320 (50%), Gaps = 19/320 (5%)
Query: 8 MLGVLMKPRR----PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
ML +L K R PR ++L PTREL+ QV + + ++ GG Q
Sbjct: 59 MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKN 121
L D+++ TPGRIL H G ++ +I+ LV+DEAD M D GF P I+ LVP
Sbjct: 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTR 178
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+L SATMT +QK+ + Q + +T + H F+
Sbjct: 179 ----------QTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY 228
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
+K ALLQ L S ++FCN + + H L + S HG + + R++ L
Sbjct: 229 SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKIL 288
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+ FK +G +V +DLAARGLD+ DV HV FD P + +Y+HR GRT R G GK
Sbjct: 289 SNFK--EGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAF 346
Query: 301 SLVAKKDVLLADRIEEAIRK 320
+LVAK+D+ D IE+ I K
Sbjct: 347 TLVAKEDIKHIDAIEKLIEK 366
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 93 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 153 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 203 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 259
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 260 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQ--GTVD 317
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 318 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 377
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 378 ADIEKLIKRN 387
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 163 RALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 222
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 223 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 273
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 274 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKHSAVVQLLR-- 327
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 328 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 384
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 385 LVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 444
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 445 DIEKLIKR 452
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 222 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 438
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 163/314 (51%), Gaps = 28/314 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K RRPRA+VL PTREL+ QV + + RSTM+ GG ++ Q + L+ +D+VV
Sbjct: 71 KRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVA 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G + IK+LVLDEAD M D GF DI K +P K
Sbjct: 131 TPGRLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKR---------- 180
Query: 132 QTVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
QT+L SAT ++++++L DE + + I R + + A + K E +L
Sbjct: 181 QTMLFSATYSQSIKQLADELLDQPRRIEVARRNIAADAVTQAVYQVEKSRKRE-----ML 235
Query: 189 QVLEPSLSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L +SKG N+V+VF T + + L + I H R L +FK
Sbjct: 236 SFL---ISKGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKR 292
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G+ LV TD+AARGLD++ + HV+ +D P DY+HR GRT R G G SLV+
Sbjct: 293 --GEFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSH 350
Query: 306 KDVLLADRIEEAIR 319
++ L IE+ ++
Sbjct: 351 EEQSLLQAIEKLLK 364
>gi|440468040|gb|ELQ37225.1| ATP-dependent RNA helicase ded-1 [Magnaporthe oryzae Y34]
gi|440487534|gb|ELQ67318.1| ATP-dependent RNA helicase ded-1 [Magnaporthe oryzae P131]
Length = 665
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 150/291 (51%), Gaps = 9/291 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++L PTREL Q++ ++ ++ + R +V GG + Q + D++V TPGR
Sbjct: 269 PTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 328
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +IKYLVLDEAD M D GF P IR+ + PN Q QT++ S
Sbjct: 329 LVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIV----EGEDMPNVQDRQTLMFS 384
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L + + L + + +++ ++K+ LL +L S
Sbjct: 385 ATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLL--STHG 442
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G ++F T ++ + FL + + HG+ +ER L F+ G CP LV T
Sbjct: 443 GGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRT--GRCPILVAT 500
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ KD
Sbjct: 501 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKD 551
>gi|384249989|gb|EIE23469.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 573
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 155/319 (48%), Gaps = 39/319 (12%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q++ A+ ++ R +V GG + Q + D++V TPGR
Sbjct: 171 PMALVLSPTRELSSQIYDEARKFTYQTGIRPVVVYGGAPVMNQLREMERGCDILVATPGR 230
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE + + YL LDEAD M D GF P IR+ + + P QT+L S
Sbjct: 231 LSDLIERARVSLSRVTYLALDEADRMLDMGFEPQIRRIV----EQEDMPRTGQRQTLLFS 286
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q+L + LH I F+ + + E ++Q +E +S
Sbjct: 287 ATFPKEIQRLAAD-----------FLHNYI------FLAVGRVGSSTELIVQHIE-YVSP 328
Query: 198 GNK--------------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
G+K +VF T + A++ FL N + HG+ QER L
Sbjct: 329 GDKRQVLLDLINTVEGLTLVFVETKRGADALEDFLAGNNFPATSIHGDRSQQEREAALRS 388
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F++ G P LV TD+AARGLD+ V HVI FD P + DY+HR GRT R G KG T+
Sbjct: 389 FRS--GRTPILVATDVAARGLDIPHVTHVINFDLPTDVDDYVHRIGRTGRAGKKGLATAF 446
Query: 303 VAKKDVLLADRIEEAIRKN 321
KD LA + E +++
Sbjct: 447 FTDKDAGLAKGLAELLQET 465
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 93 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 153 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 203 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 259
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 260 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQ--GTVD 317
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 318 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 377
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 378 ADIEKLIKRN 387
>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 471
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 161/315 (51%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+V+ PTREL++Q+ + AK S ++ F++T+V GG + Q L +++ V TPG
Sbjct: 120 PFAIVMAPTRELAQQIEKEAKVFSRSSKGFKTTIVVGGTNMSDQRSDLRQGVEVCVATPG 179
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H+ GN G + ++LDEAD M D GF P IR+ + L P+ QT+L
Sbjct: 180 RLIDHLHQGNTNLGRVSLVILDEADRMLDMGFEPQIREVMQNLPT----PH----QTLLF 231
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM V+ L + ++ + A+ KL ++ K++ L ++L +
Sbjct: 232 SATMPAEVESLAADYLNKPVKVKVGAVSVPTANVAQHLEKLVDAQ-KVDRLCELLLEEKA 290
Query: 197 KGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ K +VF + V LN +S +HG QER L+ +KN G
Sbjct: 291 EAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGGRSQQEREAALSDYKN--G 348
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
C L TD+AARGLD+ + HV+ D P DY+HR GRT R G G+ TS +D
Sbjct: 349 KCSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRVGRTGRAGMTGRATSFYTDRDS 408
Query: 309 LLADRIEEAIRKNES 323
+ +++ A+ + E+
Sbjct: 409 YIVAQVKRALAELEA 423
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 93 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 153 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 203 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 259
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 260 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQ--GTVD 317
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 318 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 377
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 378 ADIEKLIKRN 387
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 93 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 153 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 203 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 259
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 260 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQ--GTVD 317
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 318 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 377
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 378 ADIEKLIKRN 387
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 222 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKQAAVVQLLR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -GRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKR--GEIEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|389635125|ref|XP_003715215.1| ATP-dependent RNA helicase DED1 [Magnaporthe oryzae 70-15]
gi|152013501|sp|A4RHF1.2|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
gi|351647548|gb|EHA55408.1| ATP-dependent RNA helicase DED1 [Magnaporthe oryzae 70-15]
Length = 671
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 150/291 (51%), Gaps = 9/291 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++L PTREL Q++ ++ ++ + R +V GG + Q + D++V TPGR
Sbjct: 275 PTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 334
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +IKYLVLDEAD M D GF P IR+ + PN Q QT++ S
Sbjct: 335 LVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIV----EGEDMPNVQDRQTLMFS 390
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L + + L + + +++ ++K+ LL +L S
Sbjct: 391 ATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLL--STHG 448
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G ++F T ++ + FL + + HG+ +ER L F+ G CP LV T
Sbjct: 449 GGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRT--GRCPILVAT 506
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ KD
Sbjct: 507 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKD 557
>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
Length = 614
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 161/308 (52%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +S V GG PQ L+ +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N K + LL++LE
Sbjct: 280 ATWPKEVRQLAEDFLKDYVQINVGALQ---LSANHNILQIVDVCNDGEKEDKLLRLLEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+FK G P
Sbjct: 337 MSEKENKTIIFTETKRRCDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFKF--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI FD+P NS DY+HR GRTAR G + ++ A
Sbjct: 395 LIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAS 454
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 455 DLVAVLRE 462
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 222 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKHGAVVQLLR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -DRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 463
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P++PR +VL PTREL+ Q+ + + R++ T+V GG PQ +L+ +D +V T
Sbjct: 72 PKKPRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRALSRGVDCLVAT 131
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQ 132
PGR+L I+ G++ +++Y VLDEAD M D GF D+ K ++P K Q
Sbjct: 132 PGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKR----------Q 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
++ SATM+ + L + A + + + FI S+NK E LL +L
Sbjct: 182 SLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQ-FIFFVDSDNKNELLLHLL- 239
Query: 193 PSLSKGNK---VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+G V+VF T + + V LN++ I+ HG R + L FK+ G
Sbjct: 240 ----RGEHLDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKS--G 293
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
LV TD+AARG+D+ D+ HVI +D P Y+HR GRTAR GA+G S A
Sbjct: 294 QLRVLVATDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTAYSFCA 349
>gi|397169996|ref|ZP_10493423.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
gi|396088524|gb|EJI86107.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
Length = 430
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 169/312 (54%), Gaps = 30/312 (9%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVV 72
RRPRA++L PTREL+EQ +A +IS +A+F T + GG ++ Q L N +D+VV
Sbjct: 73 RRPRALILTPTRELAEQ---IANAISTYAQFLPLSVTAIYGGVKMGGQASKLQNGVDIVV 129
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+++H+ GN++ D+ ++VLDEAD M D GF D+ K + + Q
Sbjct: 130 STPGRLIEHMALGNVILSDVAFVVLDEADRMLDMGFSTDVLKLV--------EMTAASRQ 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT + AV +L + + +R + + + H + S +++ E
Sbjct: 182 TLLFSATTSPAVNELSHKILKNHQQIRVAKTNSTADTVEHVVYPVEESRK-----IELFE 236
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNY---HGEVPAQERVENLNKFKNE 247
L++ N +V+VF +T + D L + Q + VN H + R L FK+
Sbjct: 237 QLLAEHNWFQVLVFTSTKEQA---DRLLADLQKAKVNAAVCHADKSQGSRRRALADFKS- 292
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
L+ T++AARGLD+ +D+V+ F+ P DY+HR GRT R GAKG+ S V+++
Sbjct: 293 -AKLQVLIATEVAARGLDIQGLDYVVNFNLPYLPEDYVHRIGRTGRAGAKGQAISFVSRE 351
Query: 307 DVLLADRIEEAI 318
+ +RI++ I
Sbjct: 352 EEQNLERIQKLI 363
>gi|421501957|ref|ZP_15948913.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400347241|gb|EJO95595.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 448
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 14/303 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + ++ H S V GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRKGVDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L R QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFAALPKRR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++++ E + + S + S + I + + K E L +L+ +
Sbjct: 188 TFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVD-KKRKSELFLHLLQE--KRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T ++ L +S + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 GQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKA--GEVQILVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ D+ V+ D P+N+ DY+HR GRT R G+ G+ SLV +V L IE
Sbjct: 303 VAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLVCADEVELLAAIERL 362
Query: 318 IRK 320
IR+
Sbjct: 363 IRQ 365
>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
Length = 481
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 162/315 (51%), Gaps = 20/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P A+V+ PTREL++Q+ + AK S ++ F++T+V GG + Q L N +++ V TPG
Sbjct: 122 PFAIVMAPTRELAQQIEKEAKIFSRSSKGFKTTIVVGGTNMSEQRMDLKNGVEVCVATPG 181
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H+ GN + ++LDEAD M D GF P IR+ ++ L KP+ QT+L
Sbjct: 182 RLIDHLHQGNTNLARVSLVILDEADRMLDMGFEPQIREVMMNL----PKPH----QTLLF 233
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM V+ L + ++ + ++ KL S+ K++ L ++L +
Sbjct: 234 SATMPVEVEALAADYLNKPVKVKVGAVSVPTSNVAQHLEKLVDSQ-KVDRLCELLLEEKA 292
Query: 197 KGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ K +VF + + LN ++ +HG QER L F G
Sbjct: 293 EAEKFGGQLPMTVVFVERKARADEIMTLLNAEGVAAAAFHGGRSQQEREAALADFTT--G 350
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
C LV TD+AARGLD+ V HV+ D P DY+HR GRT R G G+ TS +D
Sbjct: 351 RCAVLVATDVAARGLDVKGVQHVVNLDLPRMFEDYVHRVGRTGRAGMTGRATSFYTDRDS 410
Query: 309 LLADRIEEAIRKNES 323
L +I+ A+++ E+
Sbjct: 411 FLVAQIKRALQELEN 425
>gi|387128737|ref|YP_006297342.1| ATP-dependent RNA helicase RhlB [Methylophaga sp. JAM1]
gi|386275799|gb|AFI85697.1| ATP-dependent RNA helicase RhlB [Methylophaga sp. JAM1]
Length = 438
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 165/308 (53%), Gaps = 18/308 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
++PRA++L PTREL+ Q+ + A+ ++ HA R + GG + Q D++++ D+++GTP
Sbjct: 82 KQPRALILAPTRELAIQIVKDAELLNSHAGLRIVIAHGGKDYQRQRDAIDDGCDVLIGTP 141
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L + I+ +VLDEAD MFD GF D+R FL L P+ + +L
Sbjct: 142 GRLLDFHKQRVFNLNKIEAVVLDEADRMFDLGFIKDVRFFLRRL------PSPEKRLGML 195
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK---LEALLQVLE 192
SAT++ V +L E ++ K + +++ +E K L AL++ ++
Sbjct: 196 FSATLSYKVTELAYEHMNNPEKVQVEP-EKMMGDRIEEWVYYPSNEEKIPLLLALIKRIQ 254
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
P S +VF NT + V +L N G+VP ++R L F +DG+ P
Sbjct: 255 PVRS-----IVFVNTKQVAERVWGYLEGNGYKAALLSGDVPQKKRESLLKHF--QDGEFP 307
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGL + +V HV FD P ++ DY+HRTGRTAR GA G SL ++
Sbjct: 308 YLVATDVAARGLHIPEVSHVFNFDLPQDAEDYVHRTGRTARAGASGIAISLACEEYAFSL 367
Query: 312 DRIEEAIR 319
IE I+
Sbjct: 368 PDIEHYIK 375
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 164/308 (53%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV S + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ G ++ LVLDEAD M D GF PD+++ L L + QT+L SA
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLP--------KARQTLLFSA 200
Query: 139 TMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL Q I R++ + +D +K A+++++
Sbjct: 201 TFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDI----AEGDKQAAVVKLIRDRA 256
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K +V+VFCN+ + + L + + HG+ ER++ L FK G+ LV
Sbjct: 257 LK--QVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKR--GEVEALV 312
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADR 313
TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + + LAD
Sbjct: 313 ATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD- 371
Query: 314 IEEAIRKN 321
IE+ I+++
Sbjct: 372 IEKLIKRD 379
>gi|356525235|ref|XP_003531232.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Glycine
max]
Length = 619
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 11/308 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 239 PLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 298
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 299 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPPGARQTMLFS 354
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R ++++ S + L LL +
Sbjct: 355 ATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANG 414
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF T + +++H+L N HG+ QER L FK+ G+ P
Sbjct: 415 VQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKS--GNTPI 472
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G KG T+ + LA
Sbjct: 473 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLAR 532
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 533 ALSELMQE 540
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL + Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + D+ LVLDEAD M D GF DI++ L L R Q +L SA
Sbjct: 138 LDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNN--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 674
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 155/296 (52%), Gaps = 14/296 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ A +R ST + GG PQ L +D+VV TPGR
Sbjct: 85 PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGR 144
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + + YLVLDEAD M D GF P IRK + + P+G+ QT++ +
Sbjct: 145 LNDILEMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDI------PSGR--QTLMYT 196
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-ARHDFIKLSGSENKLEALLQVLEPSLS 196
AT K V+++ DE + ++ + +A+ A +++ KL L Q+L S
Sbjct: 197 ATWPKEVRRIADELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQILR-SHD 255
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G+K+++FC T + LN Q HG+ ER + L++F++ G P LV
Sbjct: 256 SGSKILIFCTTKRMCDQLSRTLN-RQFGAAAIHGDKSQNEREKVLSQFRS--GRAPILVA 312
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
TD+AARGLD+ D+ VI +DFP DY+HR GRT R GA G + + +D A
Sbjct: 313 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDSKYA 368
>gi|387196760|gb|AFJ68778.1| hypothetical protein NGATSA_2008700, partial [Nannochloropsis
gaditana CCMP526]
Length = 339
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 159/323 (49%), Gaps = 32/323 (9%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ PR VVL PT EL+ QV VA++++ H R V+GG R Q + L +D+++GT
Sbjct: 17 PKSPRVVVLAPTAELAAQVASVARALTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGT 76
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
PGR+ +E+ ++ G+++ LVLDE D MF D F + P Q
Sbjct: 77 PGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHT----------QF 126
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN----------- 182
+ V+AT+ V + E G+ L LHK + SG
Sbjct: 127 LFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVR 186
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFL-----NENQISTVNYHGEVPAQER 237
K + L+Q L + +VFCN++ + R V++ L E + + YH V Q+R
Sbjct: 187 KRDMLVQNL--LKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDR 244
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL---DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
+NL+ F + +VCTD +RG+D DV HV++FDFP + +Y+ R GRT R G
Sbjct: 245 QKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAG 304
Query: 295 AKGKVTSLVAKKDVLLADRIEEA 317
G+VT+LV + V LA I E
Sbjct: 305 RVGRVTALVLGRQVGLARSIMEG 327
>gi|421849597|ref|ZP_16282575.1| DNA/RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371459658|dbj|GAB27778.1| DNA/RNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 636
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + ++ GG + Q++ LN +D+++ TP
Sbjct: 225 RMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATP 284
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L E G ++ LV+DEAD M D GF PDI K L+P NR QT
Sbjct: 285 GRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLP-PNR---------QT 334
Query: 134 VLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SATM ++KL D + I R S++ I + I + +K E L Q+
Sbjct: 335 LLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTG----IVVVDEYSKRETLRQL 390
Query: 191 L-EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L +P+L +VFCN + L ++ S HG++P R L KFKN+
Sbjct: 391 LKDPAL---QNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKND-- 445
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G S+ D
Sbjct: 446 ELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDK 505
Query: 309 LLADRIEE 316
LA+ IE+
Sbjct: 506 ALAEAIEK 513
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKHGAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|332286324|ref|YP_004418235.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 477
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 165/311 (53%), Gaps = 20/311 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP +PR ++L PTREL+ QV ++ S H RS ++ GG + PQ +L P+D++V
Sbjct: 76 KPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISALRKPLDILVA 135
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L H + + ++ LVLDEAD M D GF DIR+ L L + Q
Sbjct: 136 TPGRLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQ--------RQN 187
Query: 134 VLVSATMT---KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SAT + +A+ K V + I+ R +T + + + + L+ +K + L +
Sbjct: 188 LLFSATFSDEIRALSKGVLNDPIEISVARRNTASELVEQS----VVLTEQAHKRDLLSHI 243
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ S ++V+VF T + + + L ++ +S HG R L FK DG
Sbjct: 244 IRE--SGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFK--DGK 299
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARG+D+D + HV+ F+ P DY+HR GRT R G+ G SLV + ++
Sbjct: 300 VAVLVATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEIK 359
Query: 310 LADRIEEAIRK 320
L IE+ I++
Sbjct: 360 LLSAIEKLIKR 370
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 166/313 (53%), Gaps = 22/313 (7%)
Query: 13 MKP-RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
M P R P RA++L PTREL++QV K SH + R +V GG + Q D L ++
Sbjct: 86 MSPARHPVRALILAPTRELADQVAESVKRYSHSSPLRVAVVFGGVDMNAQRDQLRKGCEL 145
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNG 128
++ TPGR+L HIE N+ + LVLDEAD M D GF PD+ + L+P KP
Sbjct: 146 LIATPGRLLDHIEQKNVSLSQVSVLVLDEADRMLDMGFLPDLERIVRLLP------KPR- 198
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q++L SAT + ++KL + + + + ++ +E K L
Sbjct: 199 ---QSLLFSATFSNDIRKLARSFLNNPVEINVAPRNATAETVTQIAYPVAPNEKKAAVLY 255
Query: 189 QVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+ +LS +V+VF NT + +SR ++E I+ + HG+ ER++ L FK+
Sbjct: 256 TLKSRNLS---QVIVFVNTKIGASRVARELVSEG-INAESIHGDRSQAERIKALEGFKS- 310
Query: 248 DGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G+ LV TD+AARGLD + + VI D P N+ DY+HR GRT R GAKG+ + +
Sbjct: 311 -GEIAVLVATDVAARGLDVVGLPCVINMDLPYNAEDYVHRIGRTGRAGAKGEAIAFYTQT 369
Query: 307 DVLLADRIEEAIR 319
+ L + IE+ I+
Sbjct: 370 EERLLEDIEKLIK 382
>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Xenopus laevis]
gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
Length = 608
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R RST + GG PQ L +++ + TPGR
Sbjct: 166 PILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 226 LIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ N K + L++++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYVHINIGALE---LSANHNILQIVDVCNDGEKDDKLVRLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + L + + HG+ QER LN+FK+ G P
Sbjct: 335 MSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKSPI 392
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNI 448
>gi|334323205|ref|XP_001379329.2| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Monodelphis
domestica]
Length = 614
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 165/314 (52%), Gaps = 23/314 (7%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA++L PTREL++QV + + H RS +V GG + PQ L +++++ T
Sbjct: 85 RHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIAT 144
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQT 133
PGR+L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT
Sbjct: 145 PGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QT 195
Query: 134 VLVSATMTKAVQKLVDEEC---QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SAT + ++KL Q I R++ + +D +K A++++
Sbjct: 196 LLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKL 251
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+
Sbjct: 252 IRDRSLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GE 307
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 308 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERK 367
Query: 310 LADRIEEAIRKNES 323
IE+ I++ S
Sbjct: 368 QLADIEKLIKRTLS 381
>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
Length = 608
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R RST + GG PQ L +++ + TPGR
Sbjct: 166 PILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGVEICIATPGR 225
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 226 LIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 277
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ N K + L++++E
Sbjct: 278 ATWPKEVRQLAEDFLRDYVHINIGALE---LSANHNILQIVDVCNDGEKDDKLVRLMEEI 334
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + L + + HG+ QER LN+FK+ G P
Sbjct: 335 MSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKSPI 392
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNI 448
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 27/310 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGRIL HI + G I +L+LDEAD M + GF DI + S P + QT
Sbjct: 131 TPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIM------ESTPEEK--QT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM A++KL + E+ + IA L+ S KI A+H F +++KLEA+ +
Sbjct: 183 MLFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKI--AQHYF--AVKNKDKLEAICR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIE 315
++V +IE
Sbjct: 352 REVSSIRQIE 361
>gi|356512483|ref|XP_003524948.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Glycine
max]
Length = 614
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 11/308 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 234 PLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 293
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 294 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPPGARQTMLFS 349
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R ++++ S + L LL +
Sbjct: 350 ATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANG 409
Query: 196 SKGNKV--MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF T + +++H+L N HG+ QER L FK+ G+ P
Sbjct: 410 VQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKS--GNTPI 467
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G KG T+ + LA
Sbjct: 468 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLAR 527
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 528 ALSELMQE 535
>gi|345324427|ref|XP_001510775.2| PREDICTED: probable ATP-dependent RNA helicase DDX5
[Ornithorhynchus anatinus]
Length = 614
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL + Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 164 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 223
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 224 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 273
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 274 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 330
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L +I+ HG+ ER++ L FK G
Sbjct: 331 AEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQ--GTVD 388
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 389 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 448
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 449 ADIEKLIKRN 458
>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 405
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 156/297 (52%), Gaps = 28/297 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KPR RA++L PTREL Q+ KS HH + ST++ GG + PQ +L+ +D +V
Sbjct: 74 KPRTARALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKALSRGVDFLVA 133
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L H+ G + G Y V+DEAD M D GF D+RK + +P K
Sbjct: 134 TPGRLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKR---------- 183
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD-FIKLSGSENKLEALLQV 190
Q++L SATM K + L ++ + H+ K +A R D + L + NK L +
Sbjct: 184 QSILFSATMPKEIATLAEDILKDPVHITIPA--KTVAVERIDQRVHLVTTGNKPTMLAGL 241
Query: 191 L-EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG---EVPAQERVENLNKFKN 246
L +P ++V+VF T S+ V L + + T HG + Q+ +ENL +
Sbjct: 242 LDQPEF---DRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQ--- 295
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
G LV TD+ ARG+D+D + HVI ++ P + +Y+HR GRTAR G+ G S
Sbjct: 296 --GKARVLVATDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGSDGIAISF 350
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + D+ LVLDEAD M D GF DI++ L L R Q +L SA
Sbjct: 138 LDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNN--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 79 RALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 139 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 188
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 189 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 245
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L I+ HG+ ER++ L FK G
Sbjct: 246 AEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQ--GTVD 303
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 304 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 363
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 364 ADIEKLIKRN 373
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 91 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 150
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 151 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 200
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + +++L + H +T + + A+A + I +K AL+ +L
Sbjct: 201 SATFSPEIKRLA---ASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLRQR 257
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G + +VF N+ + L I+ HG+ ER++ L FK G
Sbjct: 258 AEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQ--GTVD 315
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 316 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 375
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 376 ADIEKLIKRN 385
>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
Length = 595
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 150/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T + GG Q L+ +++V+ TPGR
Sbjct: 203 PIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGR 262
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 263 LLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPD---RQTLMWS 314
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ + A + +L SA H+ +++ ENKL LL+
Sbjct: 315 ATWPKEVKNLAEDFLKDYAQINVGSLQ---LSANHNILQIIDVCQDYEKENKLSTLLK-- 369
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK +VF T + + + V HG+ QER L F++ G
Sbjct: 370 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 427
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 428 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 479
>gi|348618050|ref|ZP_08884583.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816755|emb|CCD29246.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 427
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + + RS V GG ++ Q L ++++V TPGR+
Sbjct: 84 RALILTPTRELADQVAANIRAYAQYTLLRSLAVFGGVDMKAQAGELRRGVEILVATPGRL 143
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E N+ G LVLDEAD M D GF PD++K L L QT+L SA
Sbjct: 144 LDHLEQKNLQLGQTGILVLDEADRMLDMGFLPDLQKILAALPRER--------QTLLFSA 195
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++ L + T + + R ++ +K +A +++ L
Sbjct: 196 TFSDEIRNLAAYYLNDPVSIEIETRNATAVNVRQLVYEID-ENDKADAAARLIR--LRGL 252
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V++FCN+ + + + L ++ HG+ +ER++ L+ FK G LV TD
Sbjct: 253 KQVIIFCNSKSGASRLTRQLARRGVNAAAIHGDKTQRERMQTLDAFKQ--GAIEALVATD 310
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL--------VAKKDVL 309
+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA+G SL +A + L
Sbjct: 311 VAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGAQGDALSLCSPSQYKQLAGIETL 370
Query: 310 LADRIEEA 317
+ R+E A
Sbjct: 371 IQRRLERA 378
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + D+ LVLDEAD M D GF DI++ L L R Q +L SA
Sbjct: 138 LDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNN--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 158/317 (49%), Gaps = 42/317 (13%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV K+ S RST+V GG + PQ +L +++V+ TPGR+
Sbjct: 94 RALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQTATLRAGVEIVIATPGRL 153
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ + + LV+DEAD M D GF PD+++ L+P K Q ++
Sbjct: 154 LDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKKR----------QNLMF 203
Query: 137 SATMTKAVQKLVDE-----------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
SAT + ++KL A T T+++ SA+ D + E L+
Sbjct: 204 SATFSPEIKKLAGSFQNNPVTIEVARSNATAERVTQTIYRVDESAKADAVSFIIRERNLK 263
Query: 186 ALLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+V+VF NT + +SR NE + HG+ ER+ L F
Sbjct: 264 --------------QVIVFSNTKIGASRLSRQLENEG-VKASAIHGDKTQNERMAALEAF 308
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K G LV TD+AARGLD+ D+ VI +D P N+ DY+HR GRT R GA G SL
Sbjct: 309 KQ--GQIEVLVATDVAARGLDITDLPCVINYDMPYNAEDYVHRIGRTGRAGASGDAISLF 366
Query: 304 AKKDVLLADRIEEAIRK 320
KD L IE+ I+K
Sbjct: 367 CDKDERLLTDIEKLIKK 383
>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 452
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 152/289 (52%), Gaps = 14/289 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ RA++L PTRELS Q+ + S H R ST+V GG + PQ +L+ +D++V T
Sbjct: 73 PKTCRALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALSKGVDVLVAT 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L ++ G + + K L+LDEAD M D GF P IRK + L N+ QT
Sbjct: 133 PGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPNKR--------QTA 184
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L+SATM K ++ L E + + + I + L E+K + LL+++ S
Sbjct: 185 LLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLP-KESKKDLLLELM--S 241
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ +VF T + + ++ L + + + HG +R++ L+ FK G L
Sbjct: 242 DRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKT--GAVKIL 299
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V TD+AARG+D+D V HV+ D P Y+HR GRTAR G G S+
Sbjct: 300 VATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAVSM 348
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 165/316 (52%), Gaps = 19/316 (6%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P+R A++L PTREL+ Q+ +++ + ++ GG + Q L
Sbjct: 75 ALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPH 134
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
+++ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +P + R
Sbjct: 135 IIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERR---- 190
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
T L SATMTK VQKL Q + +T ++ + + ++ + S+ K
Sbjct: 191 ------TFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIP-SKFKDCY 243
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L+ VL GN MVFC T N+ + V L + V HG++ +R+ LNKFK+
Sbjct: 244 LVYVLNEL--AGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKS 301
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
+ LV TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G G+ + V +
Sbjct: 302 KSRS--ILVATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQ 359
Query: 306 KDVLLADRIEEAIRKN 321
DV L RIE I K
Sbjct: 360 YDVELYQRIEHLIAKK 375
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 96 RALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 155
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 156 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 205
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + +++L + H +T + + A+A + I +K AL+ +L
Sbjct: 206 SATFSPEIKRLA---ASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHLLRQR 262
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G + +VF N+ + L I+ HG+ ER++ L FK G
Sbjct: 263 AEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQ--GTVD 320
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 321 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 380
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 381 ADIEKLIKRN 390
>gi|344941621|ref|ZP_08780909.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262813|gb|EGW23084.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 451
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ PRA++L PTREL+ Q+ + A + H + ++ GG + Q DSL + +D+++GTP
Sbjct: 104 KYPRAIILAPTRELAIQIHKDALQLGKHLNLKLALIYGGTDYQKQLDSLKSNVDIIIGTP 163
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GRI+ ++K V+DEAD MFD GF DIR L R P Q +L
Sbjct: 164 GRIIDFYRQNAFTLDNVKVTVMDEADRMFDLGFIKDIRFLL-----RRMPPPEQRL-NML 217
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT++ V +L E +R T + + A +E K+ L+ +L +
Sbjct: 218 FSATLSYKVTELAYEHMNNPVLIRIET-EEVTSKAIQQSAFCPSNEQKIPLLVGIL--NQ 274
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ + ++F NT + +D LN N T G+VP +R L+ F ++ L+
Sbjct: 275 HQPQRSIIFVNTKRCAERLDDTLNANGYKTAALSGDVPQDKRQRLLSDF--QENKITLLI 332
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGL + DV HVI +D P + DY+HR GRTAR GA G S + ++ I
Sbjct: 333 ATDVAARGLHIADVSHVINYDLPQDVEDYVHRIGRTARFGASGVAISFICEEYAYSMPDI 392
Query: 315 EEAIRK 320
EE I +
Sbjct: 393 EEYIEQ 398
>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 447
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 14/303 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + ++ H S V GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRKGVDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L R QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++++ E + + S + S + I + + K E L +L+ +
Sbjct: 188 TFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVD-KKRKSELFLHLLQE--KRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T ++ L +S + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 GQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKA--GEVQILVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ D+ V+ D P+N+ DY+HR GRT R G+ G+ SLV +V L IE
Sbjct: 303 VAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLVCADEVELLAAIERL 362
Query: 318 IRK 320
IR+
Sbjct: 363 IRQ 365
>gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
Length = 637
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + ++ GG + Q++ LN +D+++ TP
Sbjct: 223 RMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATP 282
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L E G ++ LV+DEAD M D GF PDI K L+P NR QT
Sbjct: 283 GRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLP-PNR---------QT 332
Query: 134 VLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SATM ++KL D + I R S++ I + I + +K E L Q+
Sbjct: 333 LLFSATMAPTIRKLADTFLHSPKEITVARQSSVATTITTG----IVVVDEYSKRETLRQL 388
Query: 191 L-EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L +P+L +VFCN + L ++ S HG++P R L KFKN+
Sbjct: 389 LKDPAL---QNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKND-- 443
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G S+ D
Sbjct: 444 ELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDK 503
Query: 309 LLADRIEE 316
LA+ IE+
Sbjct: 504 ALAEAIEK 511
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + RS +V GG + PQ + L ++++V TPGR+
Sbjct: 93 RALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 153 LDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT + ++KL + H +T + + A+A + I +K AL+ +L
Sbjct: 203 SATFSPEIKKLA---ASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHLLRQR 259
Query: 195 LSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G ++ +VF N+ + L I+ HG+ ER++ L FK G
Sbjct: 260 AEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQ--GTVD 317
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 318 VLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERLL 377
Query: 312 DRIEEAIRKN 321
IE+ I++N
Sbjct: 378 ADIEKLIKRN 387
>gi|339018830|ref|ZP_08644953.1| DNA/RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752044|dbj|GAA08257.1| DNA/RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 487
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR+++L PTREL+ QV + + ++ GG + Q++ LN +D+++
Sbjct: 51 RARMPRSLILEPTRELALQVAENFVQYGKYLKLTHALLIGGESMADQKEVLNRGVDVLIA 110
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L E G ++ + LV+DEAD M D GF PDI K L+P NR
Sbjct: 111 TPGRLLDLFERGGLLLNQTRILVIDEADRMLDMGFIPDIEKIVGLLP-ANR--------- 160
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM A+++L D + T + +A+ + + NK E L ++L
Sbjct: 161 QTLFFSATMAPAIRQLADAFLHTPKEI-TVSRASSVATTIEAGLVIVDEYNKRETLRRLL 219
Query: 192 -EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+P + +VFCN + L ++ + HG++P R L KFK+ G+
Sbjct: 220 RDPGM---QNAIVFCNRKRDVDVLTRSLTKHGFAVGALHGDLPQSVRFATLEKFKS--GE 274
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G SL D
Sbjct: 275 LKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSLATPYDKA 334
Query: 310 LADRIE 315
LA+ IE
Sbjct: 335 LAEAIE 340
>gi|456737831|gb|EMF62508.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia EPM1]
Length = 470
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLASFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 455
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 161/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K S + +S +V GGG++ Q L +D++V TPGR+
Sbjct: 93 RALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+H+ N+ +K+LVLDEAD M D GF DI K L+ +K++ QT++ SA
Sbjct: 153 LEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHK--------HQTLMFSA 204
Query: 139 TMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + V+ L ++ + I+ + +T KI A + E K E L +++ +
Sbjct: 205 TFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQA----VYWVTEERKRELLSELI--GV 258
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +V+VF T S+ + L + I HG+ R + L +F +G LV
Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQF--SEGKVRVLV 316
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ V+ F P DY+HR GRT R G G SLV+ KD + I
Sbjct: 317 ATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENI 376
Query: 315 EEAIRK 320
E+ I +
Sbjct: 377 EQLIER 382
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 170/311 (54%), Gaps = 23/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 151 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 210
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 211 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQR----------QTLLF 260
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + + R ++ +K A++ +L+ +
Sbjct: 261 SATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQVQDG-HKQAAVVHLLKQRAN 319
Query: 197 --KGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF N+ + SR H E I+ HG+ ER++ L+ FKN G
Sbjct: 320 EQQSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLDGFKN--GTIDA 376
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV--AKKDVLL 310
LV TD+AARGLD+ + VI FD P ++ DY+HR GRT R GA G S+ D LL
Sbjct: 377 LVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGNDDRLL 436
Query: 311 ADRIEEAIRKN 321
AD IE+ I+++
Sbjct: 437 AD-IEKLIKRS 446
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 167/315 (53%), Gaps = 19/315 (6%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R A++L PTREL+ Q+ +++ + +V GG + Q L +
Sbjct: 85 LLEHPQRLFALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHV 144
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
VV TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +P + R
Sbjct: 145 VVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERR----- 199
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
T L SATMTK V KL + + +T ++ + ++ + S+ K L
Sbjct: 200 -----TYLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIP-SKYKDVYL 253
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+ +L GN MVFC+T N+++ V L ++ V HG++ +R+ LNKFK +
Sbjct: 254 VYILNEL--AGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGK 311
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
D L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK + V +
Sbjct: 312 DRSI--LIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQY 369
Query: 307 DVLLADRIEEAIRKN 321
DV L RIE+ I K
Sbjct: 370 DVELYQRIEQLISKQ 384
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 170/311 (54%), Gaps = 23/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 93 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 153 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + + R ++ +K A++ +L+ +
Sbjct: 203 SATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQVQDG-HKQAAVVHLLKQRAN 261
Query: 197 --KGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF N+ + SR H E I+ HG+ ER++ L+ FKN G
Sbjct: 262 EQQSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLDGFKN--GTIDA 318
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV--AKKDVLL 310
LV TD+AARGLD+ + VI FD P ++ DY+HR GRT R GA G S+ D LL
Sbjct: 319 LVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGNDDRLL 378
Query: 311 ADRIEEAIRKN 321
AD IE+ I+++
Sbjct: 379 AD-IEKLIKRS 388
>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
gi|134034064|sp|A1C6C4.1|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
Length = 549
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 199 PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 259 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPD---RQTCMWS 310
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 311 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 369
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ NK+++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 370 -----DRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKA--GK 422
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 475
>gi|409048419|gb|EKM57897.1| hypothetical protein PHACADRAFT_251816 [Phanerochaete carnosa
HHB-10118-sp]
Length = 506
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 149/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 160 PIALILAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 219
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G I YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 220 LIDMLESGKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 271
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + + I++ K L++ L+ +
Sbjct: 272 ATWPKDVQKLANDFLKDFIQVNIGSTELTANHNIQQIIEVCSDFEKRSKLIKHLDQISQE 331
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L++FK G P L+ T
Sbjct: 332 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLSEFKA--GRSPILIAT 389
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +V+ +DFP N DY+HR GRT R G KG
Sbjct: 390 DVASRGLDVKDVGYVVNYDFPNNCEDYIHRIGRTGRAGMKG 430
>gi|421853143|ref|ZP_16285822.1| DNA/RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371478603|dbj|GAB31025.1| DNA/RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 636
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + ++ GG + Q++ LN +D+++ TP
Sbjct: 225 RMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATP 284
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L E G ++ LV+DEAD M D GF PDI K L+P NR QT
Sbjct: 285 GRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLP-PNR---------QT 334
Query: 134 VLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SATM ++KL D + I R S++ I + I + +K E L Q+
Sbjct: 335 LLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTG----IVVVDEYSKRETLRQL 390
Query: 191 L-EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L +P+L +VFCN + L ++ S HG++P R L KFKN+
Sbjct: 391 LKDPAL---QNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKND-- 445
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G S+ D
Sbjct: 446 ELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDK 505
Query: 309 LLADRIEE 316
LA+ IE+
Sbjct: 506 ALAEAIEK 513
>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
Length = 469
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 169/313 (53%), Gaps = 27/313 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTM----VSGGGRLRPQEDSLNNPIDMVVGT 74
+A+VLCPTREL++QV AK + ARF + + GG + PQ SL +VVGT
Sbjct: 85 QALVLCPTRELADQV---AKELRRLARFTHNIKILTLCGGVAIGPQLGSLERGAHIVVGT 141
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGRI+ H+ G++ ++ LVLDEAD M D GF DI + + QT+
Sbjct: 142 PGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDINTVIASANSER--------QTL 193
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL--- 191
L SAT +Q++ + + +LH R F +L+ +++ A++ +L
Sbjct: 194 LFSATYPANIQQMSARYQRDPVRVTVESLHTS-QQIRQHFYELAEGDSRTSAVINLLAHF 252
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+P+ ++FCNT + L +++ + HG++ +ER L +F N+ C
Sbjct: 253 QPA-----STLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANK--SC 305
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ TD+AARG+D+ D+D VI ++ +S ++HR GRT R GA+G SLVA ++++
Sbjct: 306 AVLIATDVAARGIDIKDLDAVINYELARDSEVHVHRIGRTGRAGAEGLALSLVAPREIVR 365
Query: 311 ADRIEEAIRKNES 323
+R+E+ +R+ S
Sbjct: 366 VNRLEDYLRQTIS 378
>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384042651|ref|YP_005481395.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384051168|ref|YP_005478231.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384054276|ref|YP_005487370.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384057510|ref|YP_005490177.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384060151|ref|YP_005499279.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384063443|ref|YP_005484085.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384119453|ref|YP_005502077.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
Length = 636
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + ++ GG + Q++ LN +D+++ TP
Sbjct: 225 RMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATP 284
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L E G ++ LV+DEAD M D GF PDI K L+P NR QT
Sbjct: 285 GRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLP-PNR---------QT 334
Query: 134 VLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SATM ++KL D + I R S++ I + I + +K E L Q+
Sbjct: 335 LLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTG----IVVVDEYSKRETLRQL 390
Query: 191 L-EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L +P+L +VFCN + L ++ S HG++P R L KFKN+
Sbjct: 391 LKDPAL---QNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKND-- 445
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G S+ D
Sbjct: 446 ELKVLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDK 505
Query: 309 LLADRIEE 316
LA+ IE+
Sbjct: 506 ALAEAIEK 513
>gi|333899033|ref|YP_004472906.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333114298|gb|AEF20812.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 442
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 154/303 (50%), Gaps = 14/303 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + ++ S RS V GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVQQSVQTYSQFLPLRSYAVYGGVSINPQMMKLRKGLDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQSAVKFSQLQVLVLDEADRMLDLGFARELDELFAALPKKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S + I + + K E L + K
Sbjct: 188 TFSDAIRGLAKEMLRDPLSIEVSPRNAAAKSVKQWLIPVD-KKRKAELFLHLYRS--KKW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++V+VF T ++ L I + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 SQVLVFAKTRKGVDELEQALLAEGIRADSIHGDKPQPTRLRALQRFKA--GEVDVLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ D+ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVQLLSAIEAL 362
Query: 318 IRK 320
I++
Sbjct: 363 IQQ 365
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 170/314 (54%), Gaps = 27/314 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L HI + G I +LVLDEAD M + GF DI + AS P + QT
Sbjct: 131 TPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIM------ASTPEEK--QT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM ++KL + ++ + IA L+ S KI A+H F +++KLEA+ +
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKI--AQHYF--AVKNKDKLEAICR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIEEAIR 319
++V +IE I+
Sbjct: 352 REVSSIRQIERIIK 365
>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
Length = 541
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 11/309 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 154 PLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 213
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P +R+ + + P QT+L S
Sbjct: 214 LVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV----EQMDMPPPGARQTMLFS 269
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q++ + + L + + R +F++ + + L LL S
Sbjct: 270 ATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSA 329
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G +VF T + +++H+L N + HG+ QER L FK+ G P
Sbjct: 330 TPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS--GHTPI 387
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + +A
Sbjct: 388 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMAR 447
Query: 313 RIEEAIRKN 321
+ E ++++
Sbjct: 448 SLAELMQES 456
>gi|424666934|ref|ZP_18103959.1| hypothetical protein A1OC_00492 [Stenotrophomonas maltophilia
Ab55555]
gi|401069603|gb|EJP78124.1| hypothetical protein A1OC_00492 [Stenotrophomonas maltophilia
Ab55555]
Length = 470
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLASFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|444357741|ref|ZP_21159253.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443605729|gb|ELT73559.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 403
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKN--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|405966818|gb|EKC32055.1| Putative ATP-dependent RNA helicase DDX5 [Crassostrea gigas]
Length = 677
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 154/302 (50%), Gaps = 22/302 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV VA H +R R+ V GG PQ L ++ + TPGR
Sbjct: 201 PIVLVLVPTRELAQQVQEVANDFGHASRIRNVCVYGGAPKGPQIRDLERGAEICIATPGR 260
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 261 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQI-----RPDR---QTLMWS 312
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL ++ + L L SA H+ +++ + E KL LL+
Sbjct: 313 ATWPKDVRKLAEDFLKEYIQLNIGALQ---LSANHNILQIIDVCDENEKEFKLTKLLE-- 367
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E K NK ++F T + + + + HG+ QER LN F++ G
Sbjct: 368 EIMQEKENKTLIFTETKRKADEITRRMRREGWPMMCIHGDKSQQERDWVLNGFRS--GQT 425
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P LV TD+A+RGLD+ D+ VI FD+P +S DY+HR GRTAR G G + +V
Sbjct: 426 PILVATDVASRGLDVGDIKFVINFDYPSSSEDYVHRIGRTARAGQTGTAYTFFTPDNVKQ 485
Query: 311 AD 312
A+
Sbjct: 486 AN 487
>gi|348511217|ref|XP_003443141.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Oreochromis niloticus]
Length = 628
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 160/308 (51%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 173 PICLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 232
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 233 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 284
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N K L+++LE
Sbjct: 285 ATWPKEVRQLAEDFLKEYVQINIGALQ---LSANHNILQIVDVCNDGEKENKLIRLLEEI 341
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+FK G P
Sbjct: 342 MSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKY--GKAPI 399
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI FD+P NS DY+HR GRTAR G + ++ A
Sbjct: 400 LIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAS 459
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 460 DLVSVLRE 467
>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 660
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 159/296 (53%), Gaps = 8/296 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A++L PTRELS Q++ A+ ++H R +V GG R Q L+ ++V TPGR
Sbjct: 237 PQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHELSRGCKLLVATPGR 296
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ G + + +I++L+LDEAD M D GF P IR ++ + P QT+L S
Sbjct: 297 LMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIR--MIVQGPDSDMPRAGQRQTLLYS 354
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L E + L+ + + D ++ +K +ALL +L ++
Sbjct: 355 ATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQD-VRWIEDPDKRQALLTLLRE--NE 411
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G V+VF + ++ FL ++++ V+ HG+ +ER E L FK+ G C LV T
Sbjct: 412 GKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKS--GACQVLVAT 469
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
D+A+RGLD+ +V VI +D P N DY+HR GRT R G G S +K+ + D
Sbjct: 470 DVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNIVD 525
>gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 418
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 158/304 (51%), Gaps = 12/304 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA++L PTREL+ Q+ + A + H R + GG ++ Q + L +D+++GT G
Sbjct: 84 QPRAIILAPTRELAIQIHKDAMVFAKHTNLRLGLAYGGEKVEIQRNKLEKGVDILIGTTG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ ++ G + I+ +VLDEAD MFD GF DIR + + N +L
Sbjct: 144 RIIDFVKQGTINLNSIQSVVLDEADRMFDLGFIKDIRYLFRRMPESNLRLN------MLF 197
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ VQ+L E H++ + + S +E K+ LL ++E
Sbjct: 198 SATLSHKVQELAFEHMNSPEHIQIEPERMTSENISEELFYPSNAE-KMHLLLTLMEEEWP 256
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ K +VF NT ++ V +L + + G+VP ++R + L++F DGD LV
Sbjct: 257 E--KAIVFANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQFT--DGDIDVLVA 312
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + V HV FD P + DY+HR GRT R G KG+ +L +K IE
Sbjct: 313 TDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGQKGQAITLACEKYAFNLPEIE 372
Query: 316 EAIR 319
I+
Sbjct: 373 AFIK 376
>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 539
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 164/323 (50%), Gaps = 29/323 (8%)
Query: 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPI 68
LG K P +VL PTREL+ Q+ V +S V GG RPQ +++ + +
Sbjct: 185 LGGGSKNVNPTCLVLSPTRELAVQISDVLSEAGEPCGLKSICVYGGSSKRPQINAIRSGV 244
Query: 69 DMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128
D+V+GTPGR+ IE + D+ ++VLDEAD M D GF +R F++ N+
Sbjct: 245 DIVIGTPGRLRDLIESNELRLSDVSFVVLDEADRMLDMGFEEPVR-FILSKTNKVR---- 299
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS----ARHDFIKL------S 178
Q V+ SAT V KL E + + + I S A HD +++
Sbjct: 300 ---QMVMFSATWPLDVHKLAQE------FMDPNPIKVVIGSVDLAANHDVMQIIEVLDER 350
Query: 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
+ +L ALL+ S+ N+V+VF + ++ FL + V+ HG ER
Sbjct: 351 ARDQRLVALLEKYHK--SQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERT 408
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+L+ FK +G CP LV TD+AARGLD+ DV+ VI + FPL + DY+HR GRT R G KG
Sbjct: 409 RSLSLFK--EGSCPLLVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 466
Query: 298 KVTSLVAKKDVLLADRIEEAIRK 320
+ +++ LA + +R+
Sbjct: 467 VAHTFFTQQNKGLAGELVNVLRE 489
>gi|357031714|ref|ZP_09093657.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414944|gb|EHH68588.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 573
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 158/314 (50%), Gaps = 20/314 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV K H R ++ GG + Q + LN
Sbjct: 122 EKLSGSRARARMPRSLILEPTRELALQVAENFKLYGKHLRLTHALLIGGESMTDQREVLN 181
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNR 122
D+++ TPGR+L G ++ LV+DEAD M D GF PDI K L P +
Sbjct: 182 RGADVLIATPGRLLDLFGRGGLLLTQTSLLVIDEADRMLDMGFIPDIEKIVSLLPPYR-- 239
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+ SATM +++L D + + T + +A+ + + + ++
Sbjct: 240 ---------QTLFFSATMAPEIRRLADAFLKHPVEI-TVSRPSSVATTIEERVVIVPADE 289
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K AL ++L +VFCN + +L+++ S + HG++ R L+
Sbjct: 290 KRRALKKLLR--HEDVQNAIVFCNRKRDVDMLQRYLSKHSFSAGHLHGDLAQSLRFSTLD 347
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FKN GD LVC+D+AARG+D+ + HV FD P N+ DY+HR GRT R G +G S
Sbjct: 348 SFKN--GDLKILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKEGHAFS 405
Query: 302 LVAKKDVLLADRIE 315
+ +D L + IE
Sbjct: 406 IAGPRDQKLLEAIE 419
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 509
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR ++L PTREL+ QV + + R ++ GG Q L D+++ TP
Sbjct: 72 RMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERGADVLIATP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P QT
Sbjct: 132 GRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTR----------QT 181
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+ SATM +QKL D+ Q A + + A+ + SG + + L+ L
Sbjct: 182 LFFSATMPPEIQKLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLRDLIR 241
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S + ++FCN + L ++ S HG++ + R L FK D +
Sbjct: 242 SQTDLTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFK--DNEITL 299
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV +D+AARGLD+ V HV FD P+++ DY+HR GRT R G +G +LV ++D D
Sbjct: 300 LVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLVNRRDTKYVD 359
Query: 313 RIEEAIRKN 321
I + I ++
Sbjct: 360 AITKLITRD 368
>gi|190572660|ref|YP_001970505.1| ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a]
gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
K279a]
Length = 470
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
Length = 459
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A+H F K+ GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQH-FYKVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT ++V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
Length = 566
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 165/314 (52%), Gaps = 23/314 (7%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA++L PTREL++QV + + H RS +V GG + PQ L +++++ T
Sbjct: 85 RHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIAT 144
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQT 133
PGR+L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT
Sbjct: 145 PGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QT 195
Query: 134 VLVSATMTKAVQKLVDEEC---QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SAT + ++KL Q I R++ + +D +K A++++
Sbjct: 196 LLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKL 251
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+
Sbjct: 252 IRDRSLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GE 307
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 308 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERK 367
Query: 310 LADRIEEAIRKNES 323
IE+ I++ S
Sbjct: 368 QLADIEKLIKRTLS 381
>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
Length = 496
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 161/308 (52%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 170 PICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGR 229
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 230 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 281
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N K + L+++LE
Sbjct: 282 ATWPKEVRQLAEDFLKEYIQINVGALQ---LSANHNILQIVDVCNDGEKEDKLIRLLEEI 338
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+FK G P
Sbjct: 339 MSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKY--GKAPI 396
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI FD+P NS DY+HR GRTAR G + ++ A
Sbjct: 397 LIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAH 456
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 457 DLVSVLRE 464
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 14/302 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QVF ++ + ++T+V GG ++PQ + L +D++V TPGR+
Sbjct: 88 RALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRL 147
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + G + +++ VLDEAD M D GF PDIR+ L L + Q +L SA
Sbjct: 148 LDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP--------ESRQNLLFSA 199
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T +K +++L D+ A + + + A+AR + + LL + S
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVA--RRNTAAARITHVVHPVDRQRKRELLSFMIGS-KNW 256
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T + + + L + +S+ HG R+ L +FK G LV TD
Sbjct: 257 RQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ--GKIRVLVATD 314
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+D + HVI F+ P + DY+HR GRT R G SLV+ +V L IE+
Sbjct: 315 VAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKL 374
Query: 318 IR 319
++
Sbjct: 375 LQ 376
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 14/302 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QVF ++ + ++T+V GG ++PQ + L +D++V TPGR+
Sbjct: 79 RALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + G + +++ VLDEAD M D GF PDIR+ L L + Q +L SA
Sbjct: 139 LDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP--------ESRQNLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T +K +++L D+ A + + + A+AR + + LL + S
Sbjct: 191 TFSKEIKELTDKLLHSPALIEVA--RRNTAAARITHVVHPVDRQRKRELLSFMIGS-KNW 247
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T + + + L + +S+ HG R+ L +FK G LV TD
Sbjct: 248 RQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ--GKIRVLVATD 305
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+D + HVI F+ P + DY+HR GRT R G SLV+ +V L IE+
Sbjct: 306 VAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKL 365
Query: 318 IR 319
++
Sbjct: 366 LQ 367
>gi|449542335|gb|EMD33314.1| hypothetical protein CERSUDRAFT_117934 [Ceriporiopsis subvermispora
B]
Length = 514
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 170 PIALILAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 229
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E I YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 230 LIDMLETQKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 281
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + ++ +++ K L++ LE ++
Sbjct: 282 ATWPKDVQKLANDFLKDFIQVNIGSMELTANHNIQQIVEVCSDFEKRAKLIKHLEQISAE 341
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L++FK G P L+ T
Sbjct: 342 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLSEFKA--GRSPILIAT 399
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 400 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKG 440
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 166/311 (53%), Gaps = 24/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLAD 312
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + LAD
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 313 RIEEAIRKNES 323
IE+ I++ S
Sbjct: 372 -IEKLIKRTLS 381
>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 436
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 167/321 (52%), Gaps = 27/321 (8%)
Query: 8 MLGVLMKP---RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
MLG + P RRPRA+VL PTREL+ QV + + RSTM+ GG ++ Q + L
Sbjct: 62 MLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERL 121
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNR 122
+ +D+VV TPGR+L H E G + IK+LVLDEAD M D GF I K +P+K
Sbjct: 122 HRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKR- 180
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSG 179
QT+L SAT ++++++L DE + + I R + + A + I+ S
Sbjct: 181 ---------QTLLFSATYSQSIKQLADELLNQPRRIEVARRNIAADAVTQAVYQ-IERSR 230
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
L L++ + N+V+VF T + + L + I H R
Sbjct: 231 KREMLSFLIRT-----GRWNQVLVFARTRYGADKLTEELLLDGIKASAIHSNKSQSLRTR 285
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L +FK G+ LV TD+AARGLD++ + HV+ +D P DY+HR GRT R G G
Sbjct: 286 TLAEFKR--GEFRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEDGV 343
Query: 299 VTSLVAKKDVLLADRIEEAIR 319
SLV++++ L IE+ ++
Sbjct: 344 ALSLVSREEQPLLQAIEKLLK 364
>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
Length = 425
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 161/302 (53%), Gaps = 14/302 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q+F K + R+ V GG PQ ++ + D+++ TPGR+
Sbjct: 72 RALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKAIRSGCDILIATPGRL 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L ++ G + I++LVLDEAD M D GF D+RK + + PN + T L SA
Sbjct: 132 LDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQI------PNDR--ITALFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM K +Q+L + + +R K AS ++ + +K + L+ +L K
Sbjct: 184 TMPKEIQELARDILKNPKEVRIEA-EKFTASTIDQYLIYTEKSSKKKVLVNLLNTESIK- 241
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
K +VF T + ++ +L E +I+ + HG+ +R+ L +F+ L+ TD
Sbjct: 242 -KTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRT--NQIRILIATD 298
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+ D+ HVI FD P + +Y+HR GRT R +G SLV K+++ L IE
Sbjct: 299 VAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIESY 358
Query: 318 IR 319
I+
Sbjct: 359 IQ 360
>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
SKA14]
gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
SKA14]
Length = 473
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ LVLDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
Length = 611
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 170 PICLVLAPTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 229
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK L + +P+ QT++ S
Sbjct: 230 LIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQI-----RPDR---QTLMWS 281
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N K + L+++LE
Sbjct: 282 ATWPKEVRQLAEDFLKDYVQINVGALQ---LSANHNILQIVDVCNDGEKEDKLMRLLEEI 338
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+FK G P
Sbjct: 339 MSEKENKTIIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKY--GKAPI 396
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ D+ VI +D+P NS DY+HR GRTAR G + ++ A
Sbjct: 397 LIATDVASRGLDVEDIKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAH 456
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 457 DLVSVLRE 464
>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
Length = 473
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 158/312 (50%), Gaps = 21/312 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR++VLCPTREL+ QV + + + + ++ GG + QE ++ +D+++ TPGR
Sbjct: 74 PRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDVLIATPGR 133
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVL 135
+L H E G ++ D+K +V+DEAD M D GF PDI + L P QT+
Sbjct: 134 LLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTR----------QTLF 183
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA------LLQ 189
SATM ++++ + + + + + GS EA L Q
Sbjct: 184 FSATMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQ 243
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+++ K +VFCN V L ++ + HG++ +R L+ F+ DG
Sbjct: 244 IIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFR--DG 301
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ +D+AARGLD+ V HV FD P ++ DY+HR GRT R G +GK ++V+ +D
Sbjct: 302 SIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVSPRDE 361
Query: 309 LLADRIEEAIRK 320
+ +E+ ++K
Sbjct: 362 KNFEDVEKLLQK 373
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 166/311 (53%), Gaps = 24/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLAD 312
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + LAD
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 313 RIEEAIRKNES 323
IE+ I++ S
Sbjct: 372 -IEKLIKRTLS 381
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|435852049|ref|YP_007313635.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662679|gb|AGB50105.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 422
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 162/310 (52%), Gaps = 18/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR +VL PTREL+ Q+ + RFR T+V GG PQ +L + +D+++
Sbjct: 71 KSRAPRVLVLAPTRELAAQIGDSFSTYGQFIRFRYTVVFGGVGQGPQVKALAHGVDVLIA 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L ++ G++ ++++ VLDEAD M D GF D+ + L+P+K
Sbjct: 131 TPGRLLDLLDQGHVKLNEVEFFVLDEADRMLDMGFIKDVYRIVPLLPVKR---------- 180
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
Q++ SATM+ + +L + H+ S + F+ ENK LL +L
Sbjct: 181 QSLFFSATMSPQIAELARKLLTSPVHVEVSPQATTVEKI-DQFVFFVDQENKDNLLLGLL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + + V+VF T + + V LN+N+I HG +R + ++ FK+ G+
Sbjct: 240 QHNHLRS--VLVFTRTKHRANKVALMLNKNKIEADAIHGNKSQNQRTKAMDDFKS--GNV 295
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ D+ HVI +D P +Y+HR GRTAR G+ G S A +
Sbjct: 296 RVLVATDIAARGIDIEDISHVINYDLPNEPENYVHRIGRTARAGSDGTAYSFCAADERDY 355
Query: 311 ADRIEEAIRK 320
IE+ R+
Sbjct: 356 LRSIEKLTRQ 365
>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 446
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 19/302 (6%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+VL PTREL+ QV+ + + + R S ++ GG + Q D L +D+++ PG
Sbjct: 74 KPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTV 134
R++ HIE ++ + LVLDEAD M D GF P I++ L +P +NR QT+
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNR---------QTL 184
Query: 135 LVSATMTKAVQKLVDE-ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT + +++L E C+ + S H +A + K E LL +L
Sbjct: 185 LFSATFAEPIKQLALEFMCRPREVMVAS--HNTVAETITHRVHPVDVSRKRELLLHLL-- 240
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF T + S + FL + I T HG +R+ LN FK G
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKA--GRVTV 298
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G +G+ SLV ++D L
Sbjct: 299 LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLR 358
Query: 313 RI 314
+I
Sbjct: 359 QI 360
>gi|338997140|ref|ZP_08635843.1| ATP-dependent RNA helicase RhlB [Halomonas sp. TD01]
gi|338765974|gb|EGP20903.1| ATP-dependent RNA helicase RhlB [Halomonas sp. TD01]
Length = 424
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 156/302 (51%), Gaps = 12/302 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA+++ PTREL+ Q+ + AK+++ + V GG + Q +SL ID++V TPGR
Sbjct: 120 PRALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRESLGKKIDILVATPGR 179
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L + ++ +++ LVLDEAD M GF PD+++ + P + QT L S
Sbjct: 180 LLDFHQKRDIDLSEVEVLVLDEADRMLSMGFIPDVKRII------RYTPKKEERQTFLFS 233
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT T + L + AH+ + A + L ++K L+ +L +
Sbjct: 234 ATFTDDILSLASQWTLDPAHVEIEVTVENQADIDQR-VYLVSDDDKQRLLVNLL--TQES 290
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+VMVF N + R +D L + +S G+VP +R++ L F+ +G+ LV T
Sbjct: 291 FERVMVFGNRRDLVRKLDDLLKKAGVSVAMLSGDVPQNQRIKTLESFR--EGEIQVLVAT 348
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+A RG+ + DV HVI + P + DY+HR GRT R GAKG S V ++D IE
Sbjct: 349 DVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIER 408
Query: 317 AI 318
I
Sbjct: 409 YI 410
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 165/314 (52%), Gaps = 23/314 (7%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA++L PTREL++QV + + H RS +V GG + PQ L +++++ T
Sbjct: 85 RHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIAT 144
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQT 133
PGR+L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT
Sbjct: 145 PGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QT 195
Query: 134 VLVSATMTKAVQKLVDEEC---QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SAT + ++KL Q I R++ + +D +K A++++
Sbjct: 196 LLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKL 251
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+
Sbjct: 252 IRDRSLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GE 307
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 308 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERK 367
Query: 310 LADRIEEAIRKNES 323
IE+ I++ S
Sbjct: 368 QLADIEKLIKRTLS 381
>gi|444372413|ref|ZP_21171888.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443593626|gb|ELT62346.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 416
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNS--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 173/324 (53%), Gaps = 22/324 (6%)
Query: 1 LLRHDEAMLGVLMKP-RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR 58
+LR E M P + P RA++L PTREL+ QV K+ + RST++ GG +
Sbjct: 59 MLRRLEIYANTSMSPAKHPIRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNID 118
Query: 59 PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVP 118
Q +++ + I+++V TPGR+L H++ + I+ +LDEAD M D GF PDI++ +
Sbjct: 119 AQINAVRSGIEILVATPGRLLDHLQQKTLGLSKIEIFILDEADRMLDMGFMPDIKQIIQL 178
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFI 175
L + Q ++ SAT ++ ++KL + + I + +++ + I H
Sbjct: 179 LPEKR--------QNLMFSATFSEEIKKLASKILKNPVLIEVAKQNSVSELITHVVHPV- 229
Query: 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
+ K E L+ +++ K ++V+VF T + + +LN + IS+ HG+
Sbjct: 230 ---DTTRKQELLISLIK--RQKLHQVLVFTRTKQGADHLTKWLNHSGISSAAIHGDRNQL 284
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
+R + L FK P LV TD+AARGLD+ ++ HVI F+ P N DY+HR GRT R G
Sbjct: 285 QRTQALTNFKQ--SLIPVLVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAG 342
Query: 295 AKGKVTSLVAKKDVLLADRIEEAI 318
KG SLV++++ L IE +
Sbjct: 343 TKGFAISLVSQEEKKLLIDIERVL 366
>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
Length = 540
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 151/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T + GG Q L++ +++V+ TPGR
Sbjct: 156 PIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDSGVEIVIATPGR 215
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 216 LLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPD---RQTLMWS 267
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ + A + +L +A H+ +++ ENKL LL+
Sbjct: 268 ATWPKEVKNLAEDFLKDYAQINVGSLQ---LAANHNILQIIDVCQDYEKENKLSTLLK-- 322
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK +VF T + + + V HG+ QER L F++ G
Sbjct: 323 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 380
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 381 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 432
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNS--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
gi|122206897|sp|Q2R1M8.1|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
sativa Japonica Group]
gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
Length = 623
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 11/309 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 236 PLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 295
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P +R+ + + P QT+L S
Sbjct: 296 LVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV----EQMDMPPPGARQTMLFS 351
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q++ + + L + + R +F++ + + L LL S
Sbjct: 352 ATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSA 411
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G +VF T + +++H+L N + HG+ QER L FK+ G P
Sbjct: 412 TPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS--GHTPI 469
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + +A
Sbjct: 470 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMAR 529
Query: 313 RIEEAIRKN 321
+ E ++++
Sbjct: 530 SLAELMQES 538
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 165/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D +K A++Q+L
Sbjct: 200 ATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR-- 253
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 310
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 370
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 371 DIEKLIKR 378
>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
Length = 518
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 161/308 (52%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 170 PICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPQGPQIRDLERGVEICIATPGR 229
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 230 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 281
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N K + L+++LE
Sbjct: 282 ATWPKEVRQLAEDFLKEYIQINVGALQ---LSANHNILQIVDVCNDGEKEDKLIRLLEEI 338
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+FK G P
Sbjct: 339 MSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKY--GKAPI 396
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI FD+P NS DY+HR GRTAR G + ++ A
Sbjct: 397 LIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAH 456
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 457 DLVSVLRE 464
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 173/312 (55%), Gaps = 26/312 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
RA++L PTREL++QV+ +++ +ARF RST+V GG + PQ ++L ++++V TP
Sbjct: 91 RALMLTPTRELADQVY---DNVARYARFTDLRSTVVFGGVDMNPQTEALRRGVEILVATP 147
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L H++ ++ ++ LVLDEAD M D GF PD+++ L+P + QT
Sbjct: 148 GRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQR----------QT 197
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + +++L + + + + R ++ +K A++ +L+
Sbjct: 198 LLFSATFSSEIKRLAASYLHQPVTIEVARSNSANENVRQTVFQVEDG-HKQAAVVHLLKK 256
Query: 194 SLSKG--NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++G + +VF N+ + SR H E I+ HG+ ER++ L+ FK G+
Sbjct: 257 RAAEGLSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLDGFKQ--GN 313
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGLD+ D+ VI FD P ++ DY+HR GRT R GA G S+ D
Sbjct: 314 IDALVATDVAARGLDIPDMPCVINFDLPFSAEDYIHRIGRTGRAGASGDALSIYVPADER 373
Query: 310 LADRIEEAIRKN 321
L IE+ ++++
Sbjct: 374 LLVDIEKLLKRS 385
>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 616
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 159/296 (53%), Gaps = 8/296 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A++L PTRELS Q++ A+ ++H R +V GG R Q L+ ++V TPGR
Sbjct: 195 PQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHELSRGCKLLVATPGR 254
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ G + + +I++L+LDEAD M D GF P IR ++ + P QT+L S
Sbjct: 255 LMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIR--MIVQGPDSDMPRAGQRQTLLYS 312
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L E + L+ + + D ++ +K +ALL +L ++
Sbjct: 313 ATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQD-VRWIEDPDKRQALLTLLRE--NE 369
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G V+VF + ++ FL ++++ V+ HG+ +ER E L FK+ G C LV T
Sbjct: 370 GKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKS--GACQVLVAT 427
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
D+A+RGLD+ +V VI +D P N DY+HR GRT R G G S +K+ + D
Sbjct: 428 DVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNIVD 483
>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
Length = 511
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 169/310 (54%), Gaps = 21/310 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 108 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 167
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 168 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQR----------QTLLF 217
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE--PS 194
SAT + +++L + + + + + R ++ +K A++ +L+
Sbjct: 218 SATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQVEDG-HKQAAVVHLLKQRAE 276
Query: 195 LSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S+ + +VF N+ + SR H E I+ HG+ ER++ L+ FK+ G
Sbjct: 277 QSQSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLDGFKS--GTIDA 333
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKDVLLA 311
LV TD+AARGLD+ D+ VI FD P ++ DY+HR GRT R GA G S+ V D L
Sbjct: 334 LVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDERLL 393
Query: 312 DRIEEAIRKN 321
IE+ I+++
Sbjct: 394 SDIEKLIKRS 403
>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 446
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 27/321 (8%)
Query: 8 MLGVLMKP---RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
MLG + P RRPRA+VL PTREL+ QV + + RSTM+ GG ++ Q + L
Sbjct: 62 MLGENIPPEKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERL 121
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNR 122
+ +D+VV TPGR+L H E G + IK+LVLDEAD M D GF I+K +P+K
Sbjct: 122 HRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKR- 180
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSG 179
QT+L SAT ++++++L DE + + I R++ + A + K S
Sbjct: 181 ---------QTLLFSATYSQSIKQLADELLNKPRRIEVARSNIAADAVTQAIYQVEK-SR 230
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
L L+ S K N+V+VF T + + L + I H R
Sbjct: 231 KREMLSFLI-----SRGKWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRNR 285
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L +F+ G+ LV TD+AARGLD++ + HV+ +D P DY+HR GRT R G +G
Sbjct: 286 TLAEFRR--GEFRVLVATDVAARGLDIEQLPHVVNYDLPQVPEDYVHRIGRTGRAGKEGI 343
Query: 299 VTSLVAKKDVLLADRIEEAIR 319
SLV+ ++ L IE+ ++
Sbjct: 344 ALSLVSHEEQPLLKAIEKLLK 364
>gi|403387074|ref|ZP_10929131.1| ATP-dependent RNA helicase (superfamily II) [Clostridium sp. JC122]
Length = 546
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 23/320 (7%)
Query: 7 AMLGVLMKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
A L LM+P +A++L PTREL+ QV ++ +A+++ + GG + Q L
Sbjct: 60 APLLSLMEPSNGNVQAIILAPTRELAIQVSEELSKLNKYAQYKILPIFGGQSIDKQLKPL 119
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+D+VVGTPGRIL HI + K+LVLDEAD M + GF DI + LK
Sbjct: 120 KKGVDIVVGTPGRILYHINRKTLKLDHAKFLVLDEADEMLNMGFIEDIELIISNLKKER- 178
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIA-HLRTSTLHKKIASARHDFIKLSGSENK 183
QT+L SATM KA++ L + A H+ + ++ + + ++ G ++K
Sbjct: 179 -------QTLLFSATMPKAIKSLAKNYMKSDAKHIAIAKQSLTVSKIKQFYFEV-GQKDK 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV---NYHGEVPAQERVEN 240
LEAL ++L+ K ++FC T R VD ++ Q HG++ +R+
Sbjct: 231 LEALCRILDVDAPKS--AILFCKT---KRGVDELVSALQSKGYIVEGMHGDMKQLQRLNT 285
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L KFK G+ L+ TD+AARG+D+ D+ HVI +D P ++ Y+HR GRT R +G
Sbjct: 286 LKKFKT--GNLNYLIATDVAARGIDVEDITHVINYDLPQDTESYVHRIGRTGRANKEGTA 343
Query: 300 TSLVAKKDVLLADRIEEAIR 319
S +++++ + +IE +
Sbjct: 344 YSFASRREMSMIRQIENVTK 363
>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
Length = 407
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 155/301 (51%), Gaps = 21/301 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL+ QV K+++ H R + ++GG D+L D+VV TPGR+
Sbjct: 77 RILVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYDTHADTLAQTQDIVVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+++IE I++LVLDEAD M D GFGP + + + R QT+L SA
Sbjct: 137 MEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRLSAECRWRK--------QTLLFSA 188
Query: 139 TMT-KAVQKLVDEECQGIAHLR---TSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
T+ + V+ + + A + ++ KKI H + +E+KL L +L
Sbjct: 189 TLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYH---RADNAEHKLALLKHILT-- 243
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + +VF T + L+ QI GE+P R +++F+ DG L
Sbjct: 244 -EQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFR--DGSVNIL 300
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
+ TD+AARG+DL DV HVI +D P ++ YLHR GRTAR G KG S+V D + DR
Sbjct: 301 LATDVAARGIDLPDVSHVINYDLPRSADVYLHRIGRTARAGKKGTAISIVEAHDQPMMDR 360
Query: 314 I 314
+
Sbjct: 361 V 361
>gi|407780047|ref|ZP_11127295.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407298177|gb|EKF17321.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 477
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 16/309 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + R ++ GG QE L D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLERGADVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 129 TPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTR---------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEALLQV 190
QT+ SATM + KL ++ QG + S + F+K+ S +K E L ++
Sbjct: 179 QTLFFSATMPPEITKLTEQFLQGPVRVEVSRPATTATNITQRFVKVGSKPWDKREKLRKL 238
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ ++FCN + + L ++ HG++ + R+ L F+ G+
Sbjct: 239 IDDEGETLKNAIIFCNRKSEVATLFRSLARHEYDAGALHGDMDQRARMTMLENFRK--GN 296
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV++ D
Sbjct: 297 LKLLVASDVAARGLDIPDVSHVFNFDVPIHADDYVHRIGRTGRAGRSGKAFTLVSRADQK 356
Query: 310 LADRIEEAI 318
D I + I
Sbjct: 357 YVDAIGKLI 365
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|384262623|ref|YP_005417810.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
gi|378403724|emb|CCG08840.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
Length = 506
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 152/303 (50%), Gaps = 14/303 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR+++L PTREL+ QV + + ++ GG + Q+ +L+ +D+++
Sbjct: 125 KARMPRSLILAPTRELASQVADNFTLYGKYQKLSMALLIGGESMGEQQKALDRGVDVLIA 184
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ E G+++ D+K LV+DEAD M D GF PD+ + + L QT
Sbjct: 185 TPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVSLLPKMR--------QT 236
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+ SATM K +++L D +R K + + +S +K E+L +L
Sbjct: 237 LFFSATMDKEIRRLADAFLMNPKEVRVEQTQKAADTVEQGLVVVS-HHDKRESLRHLLR- 294
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+FCN + L+++ V HG++P R E L +FK G+
Sbjct: 295 -REDVANAFIFCNRKRDVDILHRSLSKHGFDAVALHGDMPQYVRTERLEQFKK--GEARL 351
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LVC+D+AARG+D+ DV HV FD P + DY+HR GRT R G GK ++ D
Sbjct: 352 LVCSDVAARGIDISDVSHVYNFDVPTHPEDYIHRIGRTGRAGRLGKAYTIATPADAKYVR 411
Query: 313 RIE 315
IE
Sbjct: 412 AIE 414
>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
Length = 471
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 72 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 131
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + + A
Sbjct: 132 LEHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGF----QDALDAIIDAA 187
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A+H F K+ GSE +
Sbjct: 188 PKQR----QTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQH-FYKVEGSEAR 242
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT ++V L+ S ++ HG++ +ER + L +
Sbjct: 243 DEALANLL--LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQ 300
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 301 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 358
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 359 FGEKDGLRVARIEEYL 374
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + D+ LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNS--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|148230348|ref|NP_001079703.1| Probable ATP-dependent RNA helicase DDX5-like [Xenopus laevis]
gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
Length = 607
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 162/308 (52%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R R+T + GG PQ L +++ + TPGR
Sbjct: 164 PILLVLAPTRELAQQVQQVAAEYGRACRLRTTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 224 LIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN---KLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ N K + L++++E
Sbjct: 276 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCNDGEKDDKLVRLMEEI 332
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + L + + HG+ QER LN+FK+ G P
Sbjct: 333 MSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKSPI 390
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ +
Sbjct: 391 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVN 450
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 451 DLVSVLRE 458
>gi|395533175|ref|XP_003768636.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Sarcophilus
harrisii]
Length = 758
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 312 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 371
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 372 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 423
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 424 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 480
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 481 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 538
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 539 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 594
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + D+ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|428671740|gb|EKX72655.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 591
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 152/288 (52%), Gaps = 11/288 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P +VL PTREL+ Q++ A+ + R+ ++ GG +R Q L+ D+ V TPG
Sbjct: 222 QPVCLVLSPTRELAIQIYNEARKFNFGTGIRTVVLYGGSEVRRQLYDLDRGCDVCVATPG 281
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+ +E + + +KYLVLDEAD M D GF P IR + + P G QTV+
Sbjct: 282 RLTDLLERRKISFTFVKYLVLDEADRMLDMGFAPQIRAIV----DNNCMPK-IGRQTVMF 336
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT K +Q+L + +L + R I + + K + L+++L+ ++S
Sbjct: 337 SATFPKEIQQLARDFLNDYIYLAVGRVGSTNEFIRQRLI-YADQDQKPKYLVKLLKENVS 395
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
V++F T + ++ +L S VN HG+ Q+R L FK G+ P LV
Sbjct: 396 --GLVLIFVETKRRADMIEAYLQRENFSAVNIHGDRSQQDREHALRLFKT--GEAPILVA 451
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
TD+AARGLD+ ++ HVI D P N DY+HR GRT R G G TSLV
Sbjct: 452 TDVAARGLDINNITHVINCDLPTNIDDYVHRIGRTGRAGNVGVATSLV 499
>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
mellifera]
Length = 588
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 23/324 (7%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P A++L PTREL++Q+ VA A R+T + GG PQ
Sbjct: 171 AIVHIIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQA 230
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L +++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 231 HDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 288
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ I++
Sbjct: 289 ---RPD---RQVLMWSATWPKEVRALAEDFLSDYMHLNIGSL---TLSANHNIIQIVDVC 339
Query: 182 NKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ E L++ E K NK ++F T + + + ++ HG+ QER
Sbjct: 340 QEFEKDLKLYRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQER 399
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L +FK+ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 400 DHVLQEFKS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQT 457
Query: 297 GKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 458 GTAYAFFTSHNMKHAGDLIEVLRE 481
>gi|62320946|dbj|BAD93963.1| hypothetical protein [Arabidopsis thaliana]
Length = 210
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 79/84 (94%)
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
NL KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKV
Sbjct: 1 NLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKV 60
Query: 300 TSLVAKKDVLLADRIEEAIRKNES 323
TSLV++KD +LA RIEEA+R NES
Sbjct: 61 TSLVSRKDQMLAARIEEAMRNNES 84
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|350634363|gb|EHA22725.1| ATP-dependent RNA helicase of the DEAD-box protein family
[Aspergillus niger ATCC 1015]
Length = 547
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 203 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 262
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 263 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 314
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 315 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 373
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ NK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 374 -----NRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 426
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 427 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 479
>gi|449275532|gb|EMC84365.1| putative ATP-dependent RNA helicase DDX5 [Columba livia]
Length = 596
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 157 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 216
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 217 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 268
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ + +E L++++E
Sbjct: 269 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 325
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 326 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 383
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 384 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 439
>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
gallopavo]
Length = 597
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 158 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 217
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 218 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 269
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ + +E L++++E
Sbjct: 270 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 326
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 327 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 384
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 385 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 440
>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
Length = 799
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PT +L+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 374 PSGLVLAPTHKLATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 433
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 434 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 489
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I ++K LL +L
Sbjct: 490 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEQDKRSYLLDLLSSI 545
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P SK + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 546 RDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRS--G 603
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 604 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 662
>gi|432871168|ref|XP_004071866.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Oryzias
latipes]
Length = 624
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 158/310 (50%), Gaps = 22/310 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 176 PICLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 235
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 236 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 287
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V++L ++ + + L SA H+ +++ ENKL LL+
Sbjct: 288 ATWPKEVRQLAEDFLKEYVQINVGALQ---LSANHNILQIVDVCTDGEKENKLVRLLE-- 342
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E K NK ++F T + + + + HG+ QER LN+FK G
Sbjct: 343 EIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKF--GKA 400
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P L+ TD+A+RGLD+ DV VI +D+P NS DY+HR GRTAR G + ++
Sbjct: 401 PILIATDVASRGLDVEDVKFVINYDYPNNSEDYIHRIGRTARSSKTGTAYTFFTANNMRQ 460
Query: 311 ADRIEEAIRK 320
A + +R+
Sbjct: 461 ASDLIAVLRE 470
>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
Length = 435
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 161/312 (51%), Gaps = 20/312 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKN--CTLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRKNES 323
IE I++ S
Sbjct: 359 RDIERLIKREIS 370
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 372 IEKLIKRTLS 381
>gi|410943162|ref|ZP_11374903.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 841
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 160/313 (51%), Gaps = 18/313 (5%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV K H R ++ GG + Q D LN
Sbjct: 394 EKLSGSRARARMPRSLILEPTRELALQVADNFKLYGKHLRLTHALLIGGESMAEQRDVLN 453
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRA 123
+D+++ TPGR+L G ++ LV+DEAD M D GF PDI K L+P +NR
Sbjct: 454 RGVDVLIATPGRLLDLFSRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVGLLP-RNR- 511
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
QT+ SATM +++L DE + + T + +A+ + + + + K
Sbjct: 512 --------QTLFFSATMAPEIRRLADEFLRNPVEI-TVSRPSSVATTIEEGLIIVDEDEK 562
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
AL ++L +VFCN + +L ++ + + HG++ R L+
Sbjct: 563 RRALRKLLR--SQDVQSAIVFCNRKRDVDMLQRYLTKHGFAAGHLHGDLAQSLRFSTLDN 620
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
FK+ G+ LVC+D+AARG+D+ + HV FD P N+ DY+HR GRT R G G S+
Sbjct: 621 FKS--GELKILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKHGHAFSI 678
Query: 303 VAKKDVLLADRIE 315
+D L + IE
Sbjct: 679 AGPRDRRLLEAIE 691
>gi|408405797|ref|YP_006863780.1| DEAD/DEAH box helicase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366393|gb|AFU60123.1| DEAD-box ATP-dependent RNA helicase [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 454
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 15/306 (4%)
Query: 13 MKPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+KP P +A++L PTREL+ QV K + + R+ + GG + Q D L + +V
Sbjct: 65 IKPDGPLQALILAPTRELAVQVTTEIKRFAKYTGVRTVAIYGGQSINVQLDKLKQGVQIV 124
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
V TPGR++ HI+ G+++ D+K++VLDEAD M D GF DI KF++ N +
Sbjct: 125 VATPGRLIDHIKQGSIILDDVKFVVLDEADRMLDMGFIDDI-KFILFYVN-------EDR 176
Query: 132 QTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT L SATM + +L +E + I H+R + + + ++ + E K + L
Sbjct: 177 QTCLFSATMPPEILRLAEEYMKRDEIEHVRLNEEEITLDTIDQSYLVVEERE-KFKHLCN 235
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + + +VF T + + + L S V HG++ ++R ++KF+
Sbjct: 236 FIRQNKDSKAQTIVFAATKQRADRIAYNLRREGFSAVTIHGDLSQRQRDNAMHKFRKGTE 295
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D LV TD+AARG+D+ V HVI +D P + Y HR GRTAR GA+GK SLV+ +
Sbjct: 296 DI--LVATDIAARGIDVPAVGHVINYDVPDDPNVYFHRIGRTARAGAEGKAISLVSNDRI 353
Query: 309 LLADRI 314
DRI
Sbjct: 354 ADFDRI 359
>gi|391342948|ref|XP_003745777.1| PREDICTED: ATP-dependent RNA helicase p62-like [Metaseiulus
occidentalis]
Length = 541
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 157/297 (52%), Gaps = 20/297 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++Q+ +VA +R RST V GG + PQ L +++VV TPGR
Sbjct: 176 PVVLVLAPTRELAQQIQQVAVEFGRDSRIRSTCVFGGAQRGPQAGDLRRGVEIVVATPGR 235
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ ++ G YLVLDEAD M D GF P IR+ + + +P+ QT++ S
Sbjct: 236 LIDFLQSGTTNLRRCTYLVLDEADRMLDMGFEPQIRQIVGQI-----RPDR---QTLMWS 287
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQV---L 191
AT K VQ L + A + +L SA H +++ +KL L+ +
Sbjct: 288 ATWPKEVQGLASDLLTDYAQINIGSLE---LSANHRITQIVEIVEENDKLRKLMDFYGDI 344
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ S K ++F +T ++ + L + +IS HG+ +R + L +F+ G
Sbjct: 345 QKQGSGNRKTIIFTSTKRAADELADHLWKERISVQAIHGDKNQAQRDKILYQFRC--GRL 402
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TD+AARGLD+ D+ +VI +D+P NS DY+HR GRTAR G ++ KKD
Sbjct: 403 EVLVATDVAARGLDVDDIAYVINYDYPNNSEDYIHRIGRTARSNKTGTAFTMFTKKD 459
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 112 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 171
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 172 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 222
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 223 ATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKQAAVVQLLR-- 276
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 277 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 333
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 334 LVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 393
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 394 DIEKLIKR 401
>gi|384490926|gb|EIE82122.1| hypothetical protein RO3G_06827 [Rhizopus delemar RA 99-880]
Length = 816
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 24/303 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A++L PTREL+ Q++ AK + + R + GG ++ Q ++ ++V TPGR
Sbjct: 394 PQALILAPTRELASQIYEEAKKFCYRSYVRPCVAYGGADIQQQLRLIDRGCHLLVATPGR 453
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF-----LVPLKNRASKPNGQGFQ 132
++ +E + + +I+YLVLDEAD M D GF P IR+ + P+ R Q
Sbjct: 454 LVDILERRRLSFKNIQYLVLDEADRMLDMGFEPQIRRIVDGEDMPPVGKR---------Q 504
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
T+L SAT + +Q L + Q L R + I I+L E K LL+
Sbjct: 505 TLLFSATFPENIQTLARDFLQNNVFLSVGRVGATTENITQT----IELLREEEKRPRLLE 560
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
VLE SK +VF T + +V FL EN HG+ ER L+ F+ G
Sbjct: 561 VLEKHNSKEGLTLVFTETKRMADSVCEFLLENGFEATAIHGDRIQSEREAALDSFRK--G 618
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
P +V T +AARGLD+ +V HVI FD P + D++HR GRT R G G TS +++
Sbjct: 619 KTPIMVATAVAARGLDIPNVTHVISFDLPNDIDDFVHRVGRTGRAGNTGYATSFFTRQNR 678
Query: 309 LLA 311
L+
Sbjct: 679 FLS 681
>gi|440713990|ref|ZP_20894578.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
gi|436441186|gb|ELP34452.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
Length = 895
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 160/291 (54%), Gaps = 15/291 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFR-VAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
V ++ RRP+ +VL PTREL+ QV R K + + F+ + GG PQ L +
Sbjct: 330 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 389
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+VVGTPGR++ H++ G + G + LVLDEAD M + GF D++ L + + +
Sbjct: 390 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVL--------EKSPE 441
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
G Q L SAT+ K ++K+ DE A + + AS R + +S +K++AL +
Sbjct: 442 GRQVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVS-PRDKIDALTR 500
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+LE + + + V+VF T +S+ +V L++ S + +G++P + R +++ K G
Sbjct: 501 ILE--VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKR--G 556
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
LV TD+AARGLD+ + HV FD P +S Y+HR GRT R G G+
Sbjct: 557 QLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQA 607
>gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
2489]
Length = 534
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 162/304 (53%), Gaps = 12/304 (3%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A+V+ PTREL+ QV A+ ++ + GG Q SL +D+++GTPGR+
Sbjct: 73 KALVMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVASLKKGVDIMIGTPGRV 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ M + +LV+DEAD MFD GF PD+R + L P+ + QT+L SA
Sbjct: 133 IDLNHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVL------PSSEQRQTMLFSA 186
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ V+ L E + A + + + + + +S S++K++ LL ++ S K
Sbjct: 187 TLNSYVKNLAWEYTRNPAEITIAAENITVDEIAQELFHVS-SDDKMKLLLGII--SHEKP 243
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++VFCNT S V L N + G++P ++R+ ++KFK G LV TD
Sbjct: 244 ESLIVFCNTKKSCEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKA--GAIKCLVATD 301
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+ D+ VI +D P + +Y+HR GRTAR G GK + +++DV IE
Sbjct: 302 VAARGIDVNDLAMVINYDLPNEAENYVHRIGRTARAGKSGKAFTFCSEQDVYSLPPIERY 361
Query: 318 IRKN 321
I K+
Sbjct: 362 IEKS 365
>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
Length = 467
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 161/320 (50%), Gaps = 27/320 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDKGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLR-------TSTLHKKIASARHDFIKLSGSENK- 183
QT+ SATM ++++ + G A + + T+ + + + GSE +
Sbjct: 180 QTLFFSATMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRT 239
Query: 184 -LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
L AL+ L+ G ++FCN L + HG++ +R L+
Sbjct: 240 VLRALIDGEGDKLTNG---IIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLD 296
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
F+ +G LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G +GK +
Sbjct: 297 SFR--EGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAIT 354
Query: 302 LVAKKDVLLADRIEEAIRKN 321
+ +D D +E+ I+K+
Sbjct: 355 ICTPRDEKALDAVEKLIQKD 374
>gi|380027508|ref|XP_003697465.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 607
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 23/324 (7%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P A++L PTREL++Q+ VA A R+T + GG PQ
Sbjct: 171 AIVHIIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQA 230
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L +++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 231 HDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 288
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ I++
Sbjct: 289 ---RPD---RQVLMWSATWPKEVRALAEDFLSDYMHLNIGSL---TLSANHNIIQIVDVC 339
Query: 182 NKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ E L++ E K NK ++F T + + + ++ HG+ QER
Sbjct: 340 QEFEKDLKLYRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQER 399
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L +FK+ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 400 DHVLQEFKS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQT 457
Query: 297 GKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 458 GTAYAFFTSHNMKHAGDLIEVLRE 481
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 160/316 (50%), Gaps = 42/316 (13%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV K+ S H RS +V GG + PQ +L +++V+ TPGR+
Sbjct: 101 RALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAALRGGVEIVIATPGRL 160
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ + + LV+DEAD M D GF PD+++ L+P K R Q ++
Sbjct: 161 LDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLP-KQR---------QNLMF 210
Query: 137 SATMTKAVQKLVD-----------EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
SAT + ++KL A T ++K A+ D + E L+
Sbjct: 211 SATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDAVSFIIRERGLK 270
Query: 186 ALLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+V+VF NT + +SR +E + HG+ ER++ L +F
Sbjct: 271 --------------QVIVFSNTKIGASRLARQLESEG-VKASAIHGDKSQSERMQALEQF 315
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
KN G LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL
Sbjct: 316 KN--GTIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLF 373
Query: 304 AKKDVLLADRIEEAIR 319
+ KD L IE+ I+
Sbjct: 374 SDKDARLLVDIEKMIK 389
>gi|350424793|ref|XP_003493914.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 566
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 150/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T + GG Q L+ +++V+ TPGR
Sbjct: 181 PIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGR 240
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 241 LLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 292
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ + A + +L +A H+ +++ ENKL LL+
Sbjct: 293 ATWPKEVKNLAEDFLKDYAQINVGSLQ---LAANHNILQIIDVCQDYEKENKLSTLLK-- 347
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK +VF T + + + V HG+ QER L F++ G
Sbjct: 348 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 405
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 406 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 457
>gi|134034065|sp|A2QC74.1|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
Length = 565
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 211 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 270
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 271 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 322
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 323 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 381
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ NK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 382 -----NRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 434
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 487
>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
Length = 564
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 211 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 270
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 271 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 322
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 323 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 381
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ NK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 382 -----NRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 434
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 487
>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
mellifera]
Length = 566
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 150/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T + GG Q L+ +++V+ TPGR
Sbjct: 181 PIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGR 240
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 241 LLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 292
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ + A + +L +A H+ +++ ENKL LL+
Sbjct: 293 ATWPKEVKNLAEDFLKDYAQINVGSLQ---LAANHNILQIIDVCQDYEKENKLSTLLK-- 347
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK +VF T + + + V HG+ QER L F++ G
Sbjct: 348 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 405
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 406 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 457
>gi|397480288|ref|XP_003811418.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3 [Pan
paniscus]
gi|402900784|ref|XP_003913347.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
[Papio anubis]
gi|403303810|ref|XP_003942515.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
[Saimiri boliviensis boliviensis]
gi|410981522|ref|XP_003997117.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
[Felis catus]
gi|426347225|ref|XP_004041258.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
[Gorilla gorilla gorilla]
gi|441661859|ref|XP_004091549.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
[Nomascus leucogenys]
gi|194386232|dbj|BAG59680.1| unnamed protein product [Homo sapiens]
gi|296476160|tpg|DAA18275.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
taurus]
Length = 535
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 89 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 148
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 149 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 200
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 201 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 257
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 258 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 315
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 316 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 371
>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
Length = 595
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 215
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 216 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 267
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ + +E L++++E
Sbjct: 268 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 324
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 325 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 382
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 383 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 438
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 168/310 (54%), Gaps = 28/310 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTSLRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ G ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPAER----------QTLLF 198
Query: 137 SATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
SAT + ++KL Q I R+++ + ++ +K A+++++
Sbjct: 199 SATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVKLIR- 253
Query: 194 SLSKG-NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+G +V+VFCN+ + +SR + ++T HG+ ER++ L+ FK G+
Sbjct: 254 --DRGLKQVIVFCNSKIGASRLARQLERDGVVATA-IHGDRTQSERMQALDAFKR--GEI 308
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 309 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQ 368
Query: 311 ADRIEEAIRK 320
IE+ I++
Sbjct: 369 LADIEKLIKR 378
>gi|383934484|ref|ZP_09987925.1| ATP-dependent RNA helicase rhlE [Rheinheimera nanhaiensis E407-8]
gi|383704456|dbj|GAB58016.1| ATP-dependent RNA helicase rhlE [Rheinheimera nanhaiensis E407-8]
Length = 422
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 168/308 (54%), Gaps = 24/308 (7%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVVG 73
RPRA+VL PTREL+EQ +A + + +A+F ST + GG ++ Q + LN +D+V+
Sbjct: 74 RPRALVLTPTRELAEQ---IAAAFTRYAQFLPLSSTALYGGVKMGLQANKLNAGVDIVIS 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L+H+ GN++ D++++VLDEAD M D GF D+ K + S N + QT
Sbjct: 131 TPGRLLEHMALGNVILSDVEFVVLDEADRMLDMGFVTDVLKIV------GSTANSR--QT 182
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + AV +L + + +R + ++ + +H + S +++ E
Sbjct: 183 MLFSATTSPAVNELSHKLLKNHQQIRVTKVNSTADTVQHVVYPVEESRK-----IELFEQ 237
Query: 194 SLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L++ N +V+VF +T + + L + I HG+ R + FK
Sbjct: 238 LLAEHNWFQVLVFTSTKQQADQLLAGLQQRSIDAAVCHGDKSQGARRRAIADFKA--ARL 295
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ T++AARGLD+ +D+V+ F+ P DY+HR GRT R GA G S V++++
Sbjct: 296 QVLIATEVAARGLDIQGLDYVVNFNLPYLPEDYVHRIGRTGRAGASGNALSFVSREEEQS 355
Query: 311 ADRIEEAI 318
RIE+ I
Sbjct: 356 LKRIEKLI 363
>gi|417303385|ref|ZP_12090443.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
Length = 862
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 160/291 (54%), Gaps = 15/291 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFR-VAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
V ++ RRP+ +VL PTREL+ QV R K + + F+ + GG PQ L +
Sbjct: 297 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 356
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+VVGTPGR++ H++ G + G + LVLDEAD M + GF D++ L + + +
Sbjct: 357 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVL--------EKSPE 408
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
G Q L SAT+ K ++K+ DE A + + AS R + +S +K++AL +
Sbjct: 409 GRQVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVS-PRDKIDALTR 467
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+LE + + + V+VF T +S+ +V L++ S + +G++P + R +++ K G
Sbjct: 468 ILE--VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKR--G 523
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
LV TD+AARGLD+ + HV FD P +S Y+HR GRT R G G+
Sbjct: 524 QLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQA 574
>gi|291406387|ref|XP_002719528.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1
[Oryctolagus cuniculus]
Length = 535
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 89 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 148
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 149 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 200
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 201 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 257
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 258 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 315
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 316 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 371
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 222 ATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKQAAVVQLLR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|389594304|ref|XP_001685353.2| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 615
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 160/304 (52%), Gaps = 8/304 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q++ + ++ FR +V GG R Q L ++V TPGR
Sbjct: 214 PSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQIHELTRGCGLLVATPGR 273
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G Y D+++LVLDEAD M D GF P IR +V + P G+ QT+L S
Sbjct: 274 LSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRA-IVQGPDSDMPPPGER-QTLLYS 331
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q++ E L+ + + D ++ +K LL+VL+ +
Sbjct: 332 ATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDMDKRGCLLEVLKE--HQ 388
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G +V+VF + ++ +L +++I + HG+ +ER E L+ FK+ G C LV T
Sbjct: 389 GERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKS--GVCRVLVAT 446
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+A+RGLD+ +V V+ +D P N DY+HR GRT R G +G S K+ + D +
Sbjct: 447 DVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRNIVDDLIP 506
Query: 317 AIRK 320
+R+
Sbjct: 507 LLRE 510
>gi|449478651|ref|XP_004177017.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX5 [Taeniopygia guttata]
Length = 608
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ + +E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|421610904|ref|ZP_16052069.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
gi|408498358|gb|EKK02852.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
Length = 931
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 160/291 (54%), Gaps = 15/291 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFR-VAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
V ++ RRP+ +VL PTREL+ QV R K + + F+ + GG PQ L +
Sbjct: 366 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 425
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+VVGTPGR++ H++ G + G + LVLDEAD M + GF D++ L + + +
Sbjct: 426 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVL--------EKSPE 477
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
G Q L SAT+ K ++K+ DE A + + AS R + +S +K++AL +
Sbjct: 478 GRQVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVS-PRDKIDALTR 536
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+LE + + + V+VF T +S+ +V L++ S + +G++P + R +++ K G
Sbjct: 537 ILE--VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKR--G 592
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
LV TD+AARGLD+ + HV FD P +S Y+HR GRT R G G+
Sbjct: 593 QLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQA 643
>gi|380011998|ref|XP_003690078.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 566
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 150/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T + GG Q L+ +++V+ TPGR
Sbjct: 181 PIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGR 240
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 241 LLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 292
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ + A + +L +A H+ +++ ENKL LL+
Sbjct: 293 ATWPKEVKNLAEDFLKDYAQINVGSLQ---LAANHNILQIIDVCQDYEKENKLSTLLK-- 347
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK +VF T + + + V HG+ QER L F++ G
Sbjct: 348 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 405
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 406 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 457
>gi|451343566|ref|ZP_21912637.1| hypothetical protein HMPREF9943_00862 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337663|gb|EMD16820.1| hypothetical protein HMPREF9943_00862 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 519
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 168/324 (51%), Gaps = 28/324 (8%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L + R +A++L PTREL+ Q++ I H R T V GG + Q ++ +
Sbjct: 58 VLLSKIQPGERVQAIILSPTRELALQIYEELTRIGHFTGLRYTCVYGGSNIEKQIRTIKS 117
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRAS 124
+D+V+GTPGR++ + + I Y VLDEAD M + GF DI L VPL+
Sbjct: 118 GVDIVIGTPGRVMDLMRRKVLKLDGIHYFVLDEADEMLNMGFIEDIETILSSVPLER--- 174
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEEC-QGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
QT+L SATM + ++K+ + H++ ++ K + + F + + K
Sbjct: 175 -------QTILFSATMPEGIKKIASSYMKEDYEHIQIKSVQKTATTVKQYFYVVKNN-VK 226
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVEN 240
EA+ +VL+ S+ K +++FC T R+VD N+ ++ + HG++ R+
Sbjct: 227 FEAVCRVLD-SIEK-ESIIIFCRT---KRSVDELTNQLATHKFHVASIHGDIDQDARMRT 281
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L +FK + P L+ TD+AARG+D+D V HVI ++ P Y+HR GRT R G G
Sbjct: 282 LRRFKEK--QIPILIATDVAARGIDVDHVSHVINYELPQEDELYIHRIGRTGRAGQTGIA 339
Query: 300 TSLVAKKDVLLADRIEEAIRKNES 323
S V+ +++ IE RK +S
Sbjct: 340 YSFVSPREINYLRSIE---RKTKS 360
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 179 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 238
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 239 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 289
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D + +K A+++++
Sbjct: 290 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAE----GDKQAAVVKLIRDR 345
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 346 SLK--QVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKR--GEIEAL 401
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 402 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 461
Query: 314 IEEAIRKNES 323
IE+ I++ S
Sbjct: 462 IEKLIKRTLS 471
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 170/314 (54%), Gaps = 17/314 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R A+VL PTREL+ Q+ +++ +S ++ GG + Q +L +
Sbjct: 81 LLESPQRLYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPHV 140
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL-VPLKNRASKPNG 128
V+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L V ++R
Sbjct: 141 VIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR------ 194
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
+T L SATMTK VQKL + S+ ++ + + ++ + S+ K L+
Sbjct: 195 ---KTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIP-SKFKDSYLV 250
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+L GN M+FC+T N+++ V L + + HG++ +R+ +LNKFK +
Sbjct: 251 YILNEL--AGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKS 308
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK + V++ D
Sbjct: 309 RSI--LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYD 366
Query: 308 VLLADRIEEAIRKN 321
V L RIE I K
Sbjct: 367 VELFQRIEHLIGKK 380
>gi|386716961|ref|YP_006183287.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia D457]
gi|384076523|emb|CCH11104.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia D457]
Length = 477
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 159/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ L+LDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|350412504|ref|XP_003489670.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Bombus
impatiens]
Length = 605
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 23/324 (7%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P A++L PTREL++Q+ VA A R+T + GG PQ
Sbjct: 171 AIVHIIHQPRLGNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQA 230
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L +++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 231 HDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 288
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ I++
Sbjct: 289 ---RPD---RQVLMWSATWPKEVRALAEDFLTDYTHLNIGSL---TLSANHNIIQIVDVC 339
Query: 182 NKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ E L++ E K NK ++F T + + + ++ HG+ QER
Sbjct: 340 QEFEKDLKLYRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQER 399
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L +FK+ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 400 DHVLQEFKS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQT 457
Query: 297 GKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 458 GTAYAFFTTHNMKHAGDLIEVLRE 481
>gi|344205917|ref|YP_004791058.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777279|gb|AEM49832.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 473
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 159/299 (53%), Gaps = 17/299 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PR+PRA++L PTREL+ QV + S + R S + GG + Q D L +D++V
Sbjct: 74 PRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQ 132
PGR++ H+E ++ I+ L+LDEAD M D GF P I++ L +P +NR Q
Sbjct: 134 PGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQNR---------Q 184
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT +++L E + ++ + + + H + + + LL +L
Sbjct: 185 TLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKR-DLLLHLL- 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + S + FL ++ I T HG +R+ L FK G
Sbjct: 243 -AQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKA--GRVT 299
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ ++ VI FD P+ + DY+HR GRT R GA G+ SLVA+ +V L
Sbjct: 300 VLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKL 358
>gi|340725165|ref|XP_003400944.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
terrestris]
Length = 605
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 23/324 (7%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P A++L PTREL++Q+ VA A R+T + GG PQ
Sbjct: 171 AIVHIIHQPRLGNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQA 230
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L +++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 231 HDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 288
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ I++
Sbjct: 289 ---RPD---RQVLMWSATWPKEVRALAEDFLTDYTHLNIGSL---TLSANHNIIQIVDVC 339
Query: 182 NKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ E L++ E K NK ++F T + + + ++ HG+ QER
Sbjct: 340 QEFEKDLKLYRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQER 399
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L +FK+ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 400 DHVLQEFKS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQT 457
Query: 297 GKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 458 GTAYAFFTTHNMKHAGDLIEVLRE 481
>gi|212275354|ref|NP_001130628.1| uncharacterized protein LOC100191727 [Zea mays]
gi|194689682|gb|ACF78925.1| unknown [Zea mays]
gi|413943771|gb|AFW76420.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 614
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 156/310 (50%), Gaps = 21/310 (6%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+VL PTREL+ Q+ AK S R + GG + Q L +D++V TPG
Sbjct: 166 KPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMFSQLRDLEKGVDLLVATPG 225
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ +E + IKYLV+DEAD M + GF P IRK + + + P QT+L
Sbjct: 226 RLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQIRKIV----DMMNMPKKSVRQTMLF 281
Query: 137 SATMTKAVQKLVDEECQ-------GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
SAT +Q+L + G T + +KI +F+ L +LQ
Sbjct: 282 SATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKI-----EFVNGGEKRGFLLDILQ 336
Query: 190 VLEPSLSKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
LSK + +VF T + ++ + L N S + HG+ QER L FK+
Sbjct: 337 KQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDRTQQERERALKSFKS- 395
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G P LV TD+A+RGLD+ +V HVI +D P + DY+HR GRT R G GK T+L +
Sbjct: 396 -GATPILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTGRAGKAGKATALFTES 454
Query: 307 DVLLADRIEE 316
+ LA + E
Sbjct: 455 NHHLAKDLLE 464
>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 931
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 160/291 (54%), Gaps = 15/291 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFR-VAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
V ++ RRP+ +VL PTREL+ QV R K + + F+ + GG PQ L +
Sbjct: 366 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 425
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+VVGTPGR++ H++ G + G + LVLDEAD M + GF D++ L + + +
Sbjct: 426 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVL--------EKSPE 477
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
G Q L SAT+ K ++K+ DE A + + AS R + +S +K++AL +
Sbjct: 478 GRQVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVS-PRDKIDALTR 536
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+LE + + + V+VF T +S+ +V L++ S + +G++P + R +++ K G
Sbjct: 537 ILE--VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKR--G 592
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
LV TD+AARGLD+ + HV FD P +S Y+HR GRT R G G+
Sbjct: 593 QLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQA 643
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 165/309 (53%), Gaps = 26/309 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV ++ + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVQAYAKHTSLRSAVVFGGVDMNPQSAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ G ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPAER----------QTLLF 198
Query: 137 SATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
SAT + ++KL Q I R+++ + ++ +K A+++++
Sbjct: 199 SATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEV----AEGDKTGAVVKLIR- 253
Query: 194 SLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 254 --DRGLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQALDAFKR--GEIE 309
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + +
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPHERKQL 369
Query: 312 DRIEEAIRK 320
IE+ I++
Sbjct: 370 ADIEKLIKR 378
>gi|226021|prf||1406327A growth regulated nuclear 68 protein
Length = 594
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 148 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 207
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 208 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 259
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 260 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 316
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 317 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 374
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 375 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 430
>gi|397480286|ref|XP_003811417.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2 [Pan
paniscus]
gi|402900782|ref|XP_003913346.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
[Papio anubis]
gi|403303808|ref|XP_003942514.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
[Saimiri boliviensis boliviensis]
gi|426347223|ref|XP_004041257.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
[Gorilla gorilla gorilla]
gi|441661856|ref|XP_004091548.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
[Nomascus leucogenys]
gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
Length = 544
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 98 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 157
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 158 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 209
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 210 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 266
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 267 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 324
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 325 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 380
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 166/311 (53%), Gaps = 24/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 166 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 225
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 226 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 276
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 277 ATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV----AEGDKQAAVVKLIRDR 332
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 333 SLK--QVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKR--GEIEAL 388
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLAD 312
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + LAD
Sbjct: 389 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 448
Query: 313 RIEEAIRKNES 323
IE+ I++ S
Sbjct: 449 -IEKLIKRTLS 458
>gi|375264317|ref|YP_005021760.1| ATP-dependent RNA helicase DbpA [Vibrio sp. EJY3]
gi|369839641|gb|AEX20785.1| ATP-dependent RNA helicase DbpA [Vibrio sp. EJY3]
Length = 459
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F K+ GSE +
Sbjct: 176 PKKR----QTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQY-FYKVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT ++V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQSVADELHHRGFSVIDLHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
Length = 509
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 63 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 122
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 123 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 174
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 175 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 231
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 232 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 289
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 290 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 345
>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
helicase, 68kDa) [synthetic construct]
gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
Length = 615
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|351710344|gb|EHB13263.1| Putative ATP-dependent RNA helicase DDX5 [Heterocephalus glaber]
Length = 615
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 650
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 11/299 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ + + GG + Q L +D++V TPGR
Sbjct: 270 PLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGR 329
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + ++YL LDEAD M D GF P IRK + +N +P + QT+L S
Sbjct: 330 LVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIVE--QNDMPRPGAR--QTMLFS 385
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R +F++ S + L LL +
Sbjct: 386 ATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQESDKRSHLMDLLHAQRANG 445
Query: 196 SKGNKVM--VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + + VF T + +++H+L N + HG+ QER + L F++ G+ P
Sbjct: 446 VQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQALRSFRS--GNTPI 503
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + LA
Sbjct: 504 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNASLA 562
>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
[Oryctolagus cuniculus]
Length = 544
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 98 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 157
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 158 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 209
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 210 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 266
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 267 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 324
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 325 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 380
>gi|296201836|ref|XP_002748197.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 4
[Callithrix jacchus]
Length = 535
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 89 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 148
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 149 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 200
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 201 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 257
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 258 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 315
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 316 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 371
>gi|75076425|sp|Q4R6M5.1|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
Full=DEAD box protein 5
gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
Length = 614
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, partial [Rattus
norvegicus]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|194216755|ref|XP_001495197.2| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Equus
caballus]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
[Oryctolagus cuniculus]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 408
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALRRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L R Q +L
Sbjct: 135 GRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKN--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
gi|75061603|sp|Q5R4I9.1|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
Full=DEAD box protein 5
gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|410866553|ref|YP_006981164.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823194|gb|AFV89809.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 610
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 156/307 (50%), Gaps = 16/307 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
PRRP+A+V CPTREL+ QV R + + R V GG PQ ++L N +D+VVGT
Sbjct: 95 PRRPQALVTCPTRELALQVSRDIATAATVRGARVLTVYGGVGYEPQIEALENGVDVVVGT 154
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL-VPLKNRASKPNGQGFQT 133
PGR+L ++ + VLDEAD M D GF PD+ K L + KNR Q+
Sbjct: 155 PGRLLDLAHRKDLDLSGARITVLDEADEMLDLGFLPDVEKLLALTPKNR---------QS 205
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLH-KKIASARHDFIKLSGSENKLEALLQVLE 192
+L SATM A+ L H+R + F+ S +K+E + ++L+
Sbjct: 206 MLFSATMPAAIMSLARAHLNKPVHIRAEGADAQATVPDTTQFVYQSHPMDKIEVIARILQ 265
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
KVM+FC T + + + L++ HG++ R + L KF+ G+
Sbjct: 266 --ARDVEKVMIFCRTKRACQRLADDLDDRGFKARAIHGDLTQVAREKALKKFRA--GEAT 321
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+ V HVI + P + Y+HR GRT R GAKG +LV DV
Sbjct: 322 ILVATDVAARGIDVTGVSHVINHECPDDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRW 381
Query: 312 DRIEEAI 318
I +A+
Sbjct: 382 KMINKAL 388
>gi|348560357|ref|XP_003465980.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Cavia
porcellus]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
Length = 407
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 158/306 (51%), Gaps = 23/306 (7%)
Query: 1 LLRHDEAM--LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR 58
+LRH A GV+ + P AVV+ PTREL+ Q+ V + R+ V GG
Sbjct: 46 MLRHIAAQREAGVVTG-KGPFAVVMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKH 104
Query: 59 PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVP 118
PQ +L + +++VVGTPGR+ + DG + I Y VLDEAD M D GF P IR +
Sbjct: 105 PQIQALRSGVEVVVGTPGRMEDLLNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMN- 163
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH------ 172
RA + QT++ SAT AVQKL ++H T+ + +A H
Sbjct: 164 -LTRADR------QTLMFSATWPTAVQKLA---VAFLSHPVKVTIGSQDLAASHSITQHV 213
Query: 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232
+ I+ + +L LLQ + + N+V++F + V+ L HG++
Sbjct: 214 EVIEPHARDGRLLDLLQQYHGAKGRKNRVIIFVLYKKEAPRVEQLLTRKGWKAGAIHGDI 273
Query: 233 PAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 291
Q+R + + KFK+ G P L+ TD+AARGLD+ DV+ VI + FPL + DY+HR GRT
Sbjct: 274 SQQQRTDAVEKFKS--GAVPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG 331
Query: 292 RMGAKG 297
R G G
Sbjct: 332 RAGKTG 337
>gi|398406623|ref|XP_003854777.1| hypothetical protein MYCGRDRAFT_36977 [Zymoseptoria tritici IPO323]
gi|339474661|gb|EGP89753.1| hypothetical protein MYCGRDRAFT_36977 [Zymoseptoria tritici IPO323]
Length = 529
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 154/288 (53%), Gaps = 14/288 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG Q L+ +++V+ TPGR
Sbjct: 179 PIVLILAPTRELAVQIQEEVSKFGKSSRIRNTCVYGGVPKGGQIRDLSRGVEVVIATPGR 238
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 239 LIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTCMWS 290
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPSLS 196
AT K V++L + Q + + H+ A+ R H +++ K + +L+ LE +
Sbjct: 291 ATWPKEVRQLASDYQQNFIQVNIGS-HELSANHRIHQIVEVVSDFEKRDKMLKHLEAIME 349
Query: 197 -KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K NK+++F +T + + L ++ ++ HG+ ER LN+FK G P +V
Sbjct: 350 DKANKILIFTSTKRVADEITRLLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPIMV 407
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ D+ HV +D+P NS DY+HR GRT R G G +L
Sbjct: 408 ATDVASRGIDVKDITHVFNYDYPNNSEDYVHRIGRTGRAGRTGTAITL 455
>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
Length = 615
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|355754295|gb|EHH58260.1| hypothetical protein EGM_08064, partial [Macaca fascicularis]
Length = 599
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 153 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 212
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 213 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 264
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 265 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 321
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 322 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 379
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 380 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 435
>gi|343958674|dbj|BAK63192.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
gi|384475891|ref|NP_001245091.1| probable ATP-dependent RNA helicase DDX5 [Macaca mulatta]
gi|73965213|ref|XP_850467.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
[Canis lupus familiaris]
gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Ailuropoda melanoleuca]
gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
[Nomascus leucogenys]
gi|397480284|ref|XP_003811416.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1 [Pan
paniscus]
gi|402900780|ref|XP_003913345.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
[Papio anubis]
gi|403303806|ref|XP_003942513.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
[Saimiri boliviensis boliviensis]
gi|410981520|ref|XP_003997116.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
[Felis catus]
gi|426238277|ref|XP_004013081.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Ovis aries]
gi|426347221|ref|XP_004041256.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
[Gorilla gorilla gorilla]
gi|129383|sp|P17844.1|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
Full=DEAD box protein 5; AltName: Full=RNA helicase p68
gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
68kDa) [Homo sapiens]
gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
sapiens]
gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
sapiens]
gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
gi|296476161|tpg|DAA18276.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
taurus]
gi|380810156|gb|AFE76953.1| putative ATP-dependent RNA helicase DDX5 [Macaca mulatta]
gi|383416203|gb|AFH31315.1| putative ATP-dependent RNA helicase DDX5 [Macaca mulatta]
gi|384945576|gb|AFI36393.1| putative ATP-dependent RNA helicase DDX5 [Macaca mulatta]
gi|410264808|gb|JAA20370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 482
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 161/311 (51%), Gaps = 24/311 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP--T 253
+V+VF T + + + L ++ IS + HG R L++FKN C
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKN----CTLQV 299
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLR 359
Query: 313 RIEEAIRKNES 323
IE I++ S
Sbjct: 360 DIERLIKREIS 370
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 163 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRL 222
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 223 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 273
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 274 ATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKQAAVVQLLR-- 327
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 328 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 384
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 385 LVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 444
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 445 DIEKLIKR 452
>gi|340777398|ref|ZP_08697341.1| DNA/RNA helicase [Acetobacter aceti NBRC 14818]
Length = 736
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 166/319 (52%), Gaps = 30/319 (9%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV + H + ++ GG + Q++ LN
Sbjct: 296 EILSGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMADQKEVLN 355
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRA 123
+D+++ TPGR+L E G ++ + LV+DEAD M D GF PDI K L+P NR
Sbjct: 356 KGVDVLIATPGRLLDLFERGGLLLTQTRILVIDEADRMLDMGFIPDIEKIVGLLPA-NR- 413
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
QT+ SATM +++L D + I R ST+ I + + +
Sbjct: 414 --------QTLFFSATMAPEIRRLADAFLHSPKQITVSRPSTVATTIETG----LIVVDE 461
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN---ENQISTVNYHGEVPAQER 237
++K + L ++L +VFC N R VD L ++ S HG++P R
Sbjct: 462 DDKRKVLRKLLR--AENLQNAIVFC---NRKRDVDVLLKSLLKHGFSAGALHGDLPQSVR 516
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
+ L KFK+ G+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +
Sbjct: 517 FQTLEKFKS--GELKILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGKE 574
Query: 297 GKVTSLVAKKDVLLADRIE 315
GK SL D LA+ IE
Sbjct: 575 GKAYSLATPYDRKLAEAIE 593
>gi|407793557|ref|ZP_11140590.1| ATP-dependent RNA helicase RhlB [Idiomarina xiamenensis 10-D-4]
gi|407214634|gb|EKE84478.1| ATP-dependent RNA helicase RhlB [Idiomarina xiamenensis 10-D-4]
Length = 437
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 166/306 (54%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+PR PRA+++ PTREL+ Q+ A++++ H R +V GG Q L++ +D+++G
Sbjct: 80 QPRVPRALIMAPTRELAIQIANDAEALAKHCDMRLAVVYGGEGYESQRQQLSDGVDILIG 139
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
T GR++ + + G +I+ +VLDEAD MFD GF DIR FL R KP + Q
Sbjct: 140 TTGRLIDYYKQGVYSLDNIEVVVLDEADRMFDLGFIKDIR-FLF---QRMPKPAQR--QN 193
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ VQ+L E + ++K A+ + + +K++ LL ++E
Sbjct: 194 LLFSATLSYRVQELAYEHMNAPTKVEVEP-NQKTATRVSEELFYPSKPDKMKLLLTLIEE 252
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ K +VF NT + V +L + G+V ++R++ L +F DG+
Sbjct: 253 DWPE--KAIVFANTKHGCEKVYQWLANDGHRVGLLTGDVAQRKRLKILEQFA--DGELDI 308
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGL + V HV FD P + DY+HR GRT R GA G+ SL ++ V
Sbjct: 309 LVATDVAARGLHIPAVSHVYNFDLPDDCEDYVHRIGRTGRAGASGQAVSLACEEYVYNLP 368
Query: 313 RIEEAI 318
IE+ I
Sbjct: 369 AIEDYI 374
>gi|336315173|ref|ZP_08570085.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880584|gb|EGM78471.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 426
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 170/309 (55%), Gaps = 24/309 (7%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVV 72
+RPRA+ L PTREL+EQ +A+S++ +ARF T + GG ++ Q + L +D+++
Sbjct: 73 QRPRALFLTPTRELAEQ---IAESVAAYARFVPVSVTALYGGVKMGGQANKLKAGVDILI 129
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+++H+ GN++ D++++VLDEAD M D GF D+ K + + Q Q
Sbjct: 130 STPGRLIEHMALGNVILSDVEFVVLDEADRMLDMGFVTDVMKLM--------QMTSQNRQ 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT + AV +L + + +R + + + H + S +++ E
Sbjct: 182 TMLFSATTSPAVNELSHKILKNHQQIRVAKTNSTADTVHHVVYPVEESRK-----IELFE 236
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L++ N +V+VF +T + + L + +I HG+ R + FK+
Sbjct: 237 QLLAEKNWFQVLVFTSTKEQADRLLAGLQQRKIEAAVCHGDKSQGARRRAIADFKS--AK 294
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
L+ T++AARGLD+ +D+V+ F+ P DY+HR GRT R GA+G+ S V++++
Sbjct: 295 LQVLIATEVAARGLDIQGLDYVVNFNLPYLPEDYVHRIGRTGRAGAEGQAISFVSREEEQ 354
Query: 310 LADRIEEAI 318
+RI++ I
Sbjct: 355 TLERIQKLI 363
>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
[Callithrix jacchus]
Length = 544
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 98 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 157
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 158 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 209
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 210 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 266
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 267 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 324
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 325 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 380
>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
Length = 480
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 78 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 137
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L R Q +L
Sbjct: 138 GRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLL 189
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 FSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 245
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 246 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNS--TLQ 301
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 302 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 361
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 362 RDIERLIKR 370
>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
gi|354479420|ref|XP_003501908.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Cricetulus
griseus]
gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
gi|344243055|gb|EGV99158.1| putative ATP-dependent RNA helicase DDX5 [Cricetulus griseus]
Length = 615
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|383863318|ref|XP_003707128.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 566
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 150/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA H + R+T + GG Q L+ +++V+ TPGR
Sbjct: 181 PIALVLAPTRELAQQIQQVADDFGHTSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGR 240
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 241 LLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 292
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ + A + +L +A H+ +++ ENKL LL+
Sbjct: 293 ATWPKEVKNLAEDFLKDYAQINVGSLQ---LAANHNILQIIDVCQDYEKENKLSTLLK-- 347
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK +VF T + + + V HG+ QER L F++ G
Sbjct: 348 EIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRS--GKA 405
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 406 PILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 457
>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
Length = 399
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 151/300 (50%), Gaps = 18/300 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV K+ S H RS +V GG + PQ D L +D++V TPGR+
Sbjct: 63 RALVLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATPGRL 122
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L + G + + ++ LVLDEAD M D GF DIR+ L+P K QT+L
Sbjct: 123 LDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKR----------QTLLF 172
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL HL+ T + A + + K + L ++
Sbjct: 173 SATFSAPIRKLASGLLHDPVHLQV-TPENQTARSVEQVVHPCDMARKSDLLSHLIR--TG 229
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +V+VF T + + V LN+ ++ HG R L FK G LV
Sbjct: 230 EWRQVLVFSRTKHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQ--GSVRVLVA 287
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARG+D+ + HV+ D P + DY+HR GRT R G G SLVA ++ LL IE
Sbjct: 288 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIE 347
>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
Length = 615
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|440912672|gb|ELR62224.1| Putative ATP-dependent RNA helicase DDX5, partial [Bos grunniens
mutus]
Length = 671
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 225 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 284
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 285 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 336
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 337 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 393
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 394 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 451
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 452 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 507
>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
Length = 671
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 225 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 284
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 285 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 336
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 337 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 393
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 394 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 451
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 452 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 507
>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
Length = 639
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 164/326 (50%), Gaps = 27/326 (8%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P +VL PTREL++Q+ VA A R+T + GG PQ
Sbjct: 196 AIVHIIHQPRLSNGDGPIVLVLAPTRELAQQIQEVANCFGETAAVRNTCIFGGAPKGPQA 255
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L I++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 256 HDLERGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 313
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---- 177
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ ++
Sbjct: 314 ---RPD---RQVLMWSATWPKEVRALAEDFLTDYVHLNIGSL---TLSANHNITQIIDVC 364
Query: 178 --SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
++KL LLQ E K NK ++F T + + + V+ HG+ Q
Sbjct: 365 HEYEKDSKLYRLLQ--EIGTEKENKTIIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQ 422
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
ER L +F++ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 423 ERDHVLQEFRS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRR 480
Query: 295 AKGKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 481 QTGTAYAFFTSHNMKHAGDLIEVLRE 506
>gi|307545623|ref|YP_003898102.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
gi|307217647|emb|CBV42917.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
Length = 474
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 156/306 (50%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PRA+++ PTREL+ Q+ + AK+++ V GG + Q D L +D++V
Sbjct: 166 KPGAPRALIVAPTRELALQIEKDAKALARFTNLNVASVVGGMDYQKQRDGLGKKLDLLVA 225
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L + ++ ++ LVLDEAD M GF PD+++ + P + QT
Sbjct: 226 TPGRLLDFHQKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRII------RHTPKKEERQT 279
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT T + L + AH+ A + L ++K L+++L+
Sbjct: 280 FLFSATFTDDILNLAGQWTHEPAHVDIEVTVDNAADIDQR-VYLVSDDDKERLLVKLLQQ 338
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++VMVF N + R +D L + I+ G+VP +R+ L +F+ +G+
Sbjct: 339 --ESFDRVMVFGNRRDLVRKLDGLLRKADINVAMLSGDVPQNQRIRTLEQFR--EGEIQV 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A RG+ + DV HVI + P + DY+HR GRT R GAKG S V ++D
Sbjct: 395 LVATDVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLP 454
Query: 313 RIEEAI 318
IE I
Sbjct: 455 EIERFI 460
>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 157 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 216
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 217 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 268
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 269 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 325
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 326 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 383
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 384 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 439
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 160/301 (53%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q+ K+ + H + ST+V GG + PQ +L +D++V TPGR+
Sbjct: 94 RALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALARGVDILVATPGRL 153
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ + ++++LDEAD M D GF P IRK L + G+ QT++ SA
Sbjct: 154 LDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLL--------RMVGEERQTLMFSA 205
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM A+++L D+ + + K + S K +AL+ ++ P G
Sbjct: 206 TMAPAIRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASA-KPDALIDLMAP--EAG 262
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ ++F T + V L + HG+ +R L+ FK+ G+ P LV TD
Sbjct: 263 KRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKS--GEAPVLVATD 320
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+D VD V+ ++ P + +Y+HR GRTAR GA G+ +L A + ++ IE+
Sbjct: 321 IAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDERVMLKDIEKT 380
Query: 318 I 318
+
Sbjct: 381 M 381
>gi|444726978|gb|ELW67488.1| putative ATP-dependent RNA helicase DDX5 [Tupaia chinensis]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|344291256|ref|XP_003417352.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Loxodonta
africana]
Length = 616
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
Length = 745
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+V+ PTREL+ Q+F AK +H R ++ GG L Q ++ +VVGTP
Sbjct: 374 QEPQALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLGHQLRNVEQGAHIVVGTP 433
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I G + +KYL+LDEAD M D GFGP+I+K + L P + QT++
Sbjct: 434 GRLIDVIGKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHEL----GAPPKEQRQTLM 489
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + +Q+L E L R +A H+ + + K + L +L
Sbjct: 490 FSATFPEEIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEVPR----DQKRQKLCDIL- 544
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
S S +K +VF ++ + +L+++ T + HG+ QER E L FK G P
Sbjct: 545 -SESGTDKTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKT--GRAP 601
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
LV T +AARGLD+ V HVI +D P + +Y+HR GRT R G GK TS
Sbjct: 602 ILVATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNVGKSTSF 652
>gi|355568839|gb|EHH25120.1| hypothetical protein EGK_08882 [Macaca mulatta]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|392564654|gb|EIW57832.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 494
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 149/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 135 PIALILAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G I YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLESGKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + ++ + +++ K L++ L+ +
Sbjct: 247 ATWPKDVQKLANDFLKDFIQVNIGSMELTANHSITQIVEVVSDFEKRAKLIKHLDQISQE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L +FK G P L+ T
Sbjct: 307 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G G
Sbjct: 365 DVASRGLDVKDVRYVINYDFPNNCEDYIHRIGRTGRAGTTG 405
>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
[Callithrix jacchus]
Length = 614
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|91206537|sp|Q4X195.2|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
Length = 547
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 24/298 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 195 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 254
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 255 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI-----RPD---RQTCMWS 306
Query: 138 ATMTKAVQKLV-----DEECQGIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L D I + S H+ +I DF K LE +++
Sbjct: 307 ATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 365
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ NK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 366 -----NRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 418
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG + ++
Sbjct: 419 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 476
>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
112]
Length = 419
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKS--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
14]
gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
9]
Length = 414
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKS--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
Length = 614
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
Length = 411
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 21/313 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP R ++L PTREL+ Q+ A+ ++ H R ++GG + + D L D+VV
Sbjct: 72 KPGPARMLILTPTRELAMQITEQARQLAKHTRLNIFTITGGVQYQEHADILATTQDIVVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L++I I++L+LDEAD M D GFGP + + + R QT
Sbjct: 132 TPGRLLEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRWRK--------QT 183
Query: 134 VLVSATMT-KAVQKLVDEECQGIAHLRTSTL---HKKIASARHDFIKLSGSENKLEALLQ 189
+L SAT+ + V+ + A + KKIA H + ++KLE L
Sbjct: 184 LLFSATLEGRGVEGFTADLLNNPAEITAEPPRRERKKIAQWYH---RADSMKHKLELLKV 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L + + +VF T + L QI GE+P R +++F+ +G
Sbjct: 241 IL---TQQAERSIVFIKTRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFR--EG 295
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D L+ TD+AARG+D+ DV HVI FD P ++ YLHR GRTAR G KG SLV D
Sbjct: 296 DINILLATDVAARGIDIPDVSHVINFDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQ 355
Query: 309 LLADRIEEAIRKN 321
++ DR+ +++
Sbjct: 356 MMMDRVARYVKEE 368
>gi|55562721|gb|AAH86320.1| Ddx5 protein, partial [Mus musculus]
Length = 648
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 201 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 260
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 261 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 312
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 313 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 369
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 370 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 427
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 428 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 483
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 161/310 (51%), Gaps = 16/310 (5%)
Query: 11 VLMKPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
++ PR+ RA+V+ PTREL+EQ+ + R +S V GG + PQ + L N ++
Sbjct: 63 LMQGPRKQVRALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQIEKLKNGVE 122
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+VV PGR+L HI G + +++ LVLDEAD MFD GF PDIR+ L L +
Sbjct: 123 IVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILKHLPAQR------ 176
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+L SATM ++ L E + A ++ + A+ H ++ K L+Q
Sbjct: 177 --QTMLFSATMPAEIRGLAREILRDPATVQVDNV-APAATVSHALYPVA-QHLKTPLLMQ 232
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L+ + + V++F T + ++ V L + + + G + R ++ F+N G
Sbjct: 233 LLK--HTDTDSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRN--G 288
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+ V HVI +D P S Y+HR GRT R G ++V +D
Sbjct: 289 TYQILVATDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDT 348
Query: 309 LLADRIEEAI 318
L+ IE +
Sbjct: 349 LMVKAIERTL 358
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 154/304 (50%), Gaps = 18/304 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR +VL PTREL+ QV + FRS ++ GG + PQ+ L +D+VV TP
Sbjct: 73 RHPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQKLIKGVDVVVATP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQT 133
GR+L H++ ++ ++ LVLDEAD M D GF DIRK L +P K QT
Sbjct: 133 GRLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKR----------QT 182
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT +K ++ L E ++ T A + + K E L Q +
Sbjct: 183 LLFSATFSKEIKSLAAEFLHQPTEIQV-TPQNTAAELVSQIVYPVDKKRKRELLSQKI-- 239
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+V+VF T + + + L ++ I++ HG R + L FK G
Sbjct: 240 GEENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQ--GSVRV 297
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + HV+ F+ P + DY+HR GRTAR G +G SLV ++ L
Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELKLLS 357
Query: 313 RIEE 316
IE+
Sbjct: 358 DIEK 361
>gi|341940436|sp|Q61656.2|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
Full=DEAD box protein 5; AltName: Full=RNA helicase p68
Length = 614
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
7894]
Length = 416
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKS--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|395324055|gb|EJF56503.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 487
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 149/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 135 PIALILAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLESGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + ++ +++ K L++ LE +
Sbjct: 247 ATWPKDVQKLANDFLKDFIQVNIGSMELTANHNISQIVEVVSDFEKRTKLIKHLEQISQE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L++FK G P L+ T
Sbjct: 307 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLSEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G G
Sbjct: 365 DVASRGLDVKDVRYVINYDFPNNCEDYIHRIGRTGRAGMTG 405
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 154/295 (52%), Gaps = 15/295 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR++VL PTREL+ QV K + + + ++ GG PQ+ L+ D+++ TP
Sbjct: 71 RMPRSLVLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKILDQGADILIATP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H E G ++ ++ LV+DEAD M D GF PDI + L L R QT+
Sbjct: 131 GRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRR--------QTLF 182
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM ++ LVD + + T + A FI L S+N+ + L ++
Sbjct: 183 FSATMPGEIKHLVDTFLRDPERVEV-TRPAQTADTITQFI-LRVSDNQARTKREALRAAI 240
Query: 196 SKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ ++FCN V L + S HG++ +R + L +FK+ G+
Sbjct: 241 NRDGVKNGIIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKS--GELRL 298
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV +D+AARGLD+ V HV D P N+ DY+HR GRT R G KG+ +LV+ +D
Sbjct: 299 LVASDVAARGLDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLVSSED 353
>gi|424910616|ref|ZP_18333993.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846647|gb|EJA99169.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 498
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 157/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ + NK L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPVRVEVA---KPSSTAKTVAQRIVAAHNKDYEKRAVL 236
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 237 RDLVRAEEAELKNA---IIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 293
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G GK ++V
Sbjct: 294 K--DGNLKLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIV 351
Query: 304 AKKDVLLADRIEEAI 318
K D D IE+ I
Sbjct: 352 TKSDTKYLDAIEKLI 366
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 167/315 (53%), Gaps = 19/315 (6%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G+ PR A +L PTRELS Q+ + +++ R + GG + Q +L+
Sbjct: 86 GLWDDPRPLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIALSKRPH 145
Query: 70 MVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
++V TPGR+ H+E+ ++YLV+DEAD + D FGP I K L +P + R
Sbjct: 146 VIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKERR---- 201
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
T+L SATMT V KL + + T + +++ + ++ + + +K
Sbjct: 202 ------TMLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYLFMPFA-HKDTY 254
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L+ + + G+ ++VF T++ ++ + L S + HG++ R+ LNKFK
Sbjct: 255 LVHLANEQV--GHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKA 312
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G +VCTD+AARGLD+ VD V+ FD P +S DY+HR GRTAR G +G+ +LV +
Sbjct: 313 --GGRSIMVCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQ 370
Query: 306 KDVLLADRIEEAIRK 320
DV L RIE AI K
Sbjct: 371 YDVELLQRIEAAIGK 385
>gi|372489782|ref|YP_005029347.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356335|gb|AEV27506.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 473
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 163/308 (52%), Gaps = 14/308 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R+PR ++L PTREL+ QV ++ H +S + GG + PQ +L +D++V P
Sbjct: 78 RKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMNPQIAALKRGVDILVACP 137
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L HI + I+ LVLDEAD M D GF DIRK L L PNG+ Q +L
Sbjct: 138 GRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILALL-----PPNGK-RQNLL 191
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT + +++L + + + + + I + E K + LL + E
Sbjct: 192 FSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVD-REKKKDVLLHLFE--- 247
Query: 196 SKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++G N+V++F T + + A+ L++ I + HG RV L +FK +G L
Sbjct: 248 NRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFK--EGKLVAL 305
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + +V+ ++ P + DY+HR GRT R GA+G+ SLV +
Sbjct: 306 VATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDERDNLRS 365
Query: 314 IEEAIRKN 321
IE I+K+
Sbjct: 366 IERLIKKD 373
>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 443
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 161/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 77 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 137 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 189 TFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR--Q 242
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 243 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 300
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 301 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 360
Query: 315 EEAIRK 320
E+ I++
Sbjct: 361 EKLIKR 366
>gi|449135622|ref|ZP_21771069.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
gi|448885676|gb|EMB16100.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
Length = 851
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 156/286 (54%), Gaps = 15/286 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFR-VAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
RRP+ +VL PTREL+ QV R K + + F+ + GG PQ L + +VVGT
Sbjct: 292 RRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVVGT 351
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ H++ G + G + LVLDEAD M + GF D++ L + +G Q
Sbjct: 352 PGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVL--------EKTPEGRQVA 403
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT+ K ++K+ DE A + + AS R + +S +K++AL ++LE
Sbjct: 404 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVS-PRDKIDALTRILE-- 460
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + + V+VF T +S+ +V L++ S + +G++P + R +++ K G L
Sbjct: 461 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKR--GQLDVL 518
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
V TD+AARGLD+ + HV FD P +S Y+HR GRT R G G+
Sbjct: 519 VATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQA 564
>gi|441477759|dbj|BAM75192.1| vasa-like gene-1, partial [Pinctada fucata]
Length = 476
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 150/290 (51%), Gaps = 10/290 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+V+ PTREL+ Q++ A+ +H R ++ GG + Q + +++VGTP
Sbjct: 103 QEPQALVIAPTRELAVQIYMDARKFAHGTMLRPVVLYGGTSVGYQIRQVEQGTNILVGTP 162
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ I G + IKYL+LDEAD M D GFGP+I+K + + P+ QT++
Sbjct: 163 GRLMDIIGKGKISLEKIKYLILDEADRMLDMGFGPEIKKIVTEM----GMPSKTDRQTLM 218
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT K VQ++ E L + ++ E K + L +L S
Sbjct: 219 FSATFPKEVQEIAAEYLNHYLFLTVGRVGGACTDVTQTVFEVDRQE-KRQRLSDILTESG 277
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
S +K +VF ++ + FL+++ T + HG+ ER E L FK G P L+
Sbjct: 278 S--DKTLVFVEQKRNADFLASFLSQSGFPTTSIHGDRLQAEREEALKDFKT--GKAPILI 333
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
T +AARGLD+ V HVI +D P +Y+HR GRT R G GK TS +
Sbjct: 334 ATSVAARGLDIPLVKHVINYDLPNRIEEYVHRIGRTGRCGNLGKATSFYS 383
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 24/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 111 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVLIATPGRL 170
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 171 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 221
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R+++ + + +D + +K A++Q+L
Sbjct: 222 ATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAE----GDKQAAVVQLLR-- 275
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G +V+VFCN+ + + L + + HG+ ER++ L+ FK G+
Sbjct: 276 -DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKR--GEIEA 332
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLA 392
Query: 313 RIEEAIRK 320
IE+ I++
Sbjct: 393 DIEKLIKR 400
>gi|375111307|ref|ZP_09757517.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
gi|374568483|gb|EHR39656.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
Length = 421
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 167/308 (54%), Gaps = 24/308 (7%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVVG 73
RPRA++L PTREL+EQ +A +IS +A+F + T + GG ++ Q L +D++V
Sbjct: 74 RPRALILTPTRELAEQ---IANAISSYAQFLPLKVTAIYGGAKMGGQASKLQAGLDILVS 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+++H+ GN + D++++VLDEAD M D GF D+ K L + QT
Sbjct: 131 TPGRLIEHMALGNAILSDVEFVVLDEADRMLDMGFSTDVLKLL--------QMTSAARQT 182
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + AV +L + + +R + + + H + S +++ E
Sbjct: 183 LLFSATTSPAVNELSHKILKNHQQIRVAKTNSTADTVEHVVYPVEESRK-----IELFEQ 237
Query: 194 SLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L++ N +V+VF +T + + L + +I+ H + R + FK+
Sbjct: 238 LLAEQNWFQVLVFTSTKEQADRLLADLQKAKINAAVCHADKSQGSRRRAIADFKS--AKL 295
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ T++AARGLD+ +D+V+ F+ P DY+HR GRT R GAKG+ S V++++
Sbjct: 296 QVLIATEVAARGLDIQGLDYVVNFNLPYLPEDYVHRIGRTGRAGAKGQAISFVSREEEQN 355
Query: 311 ADRIEEAI 318
+RI++ I
Sbjct: 356 LERIQKLI 363
>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
Length = 690
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 243 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 302
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 303 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 354
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 355 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 411
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 412 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 469
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 470 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 525
>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
Length = 521
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 154/308 (50%), Gaps = 18/308 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR++++ PTREL+ QV + R ++ GG + QE L+ +D+++
Sbjct: 74 KARMPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLDRGVDVLIA 133
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ D+K LV+DEAD M D GF PD+ + L+P
Sbjct: 134 TPGRLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIR---------- 183
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +++L D+ + + ++ S ++K +AL +L
Sbjct: 184 QTLFFSATMAPEIKRLADKFLMNPKEVSVDAPASAAENVAQHLVRCS-VKDKRDALRSLL 242
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FCN + L I V HG++ R E L KFK G+
Sbjct: 243 KSETV--DSALIFCNRKRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKA--GEA 298
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
++C+D+AARG+D+ + HV FD P ++ DY+HR GRT R G G+ +L +D L
Sbjct: 299 RLVICSDVAARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTLATPEDSKL 358
Query: 311 ADRIEEAI 318
+E I
Sbjct: 359 LSAVERLI 366
>gi|418408565|ref|ZP_12981881.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358005479|gb|EHJ97805.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 504
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 156/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ S NK L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPTRIEVA---KPSSTAKTVTQRIVASHNKDYEKRAVL 236
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 237 RDLVRAEEAEL---KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 293
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+ DG LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV
Sbjct: 294 R--DGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLV 351
Query: 304 AKKDVLLADRIEEAI 318
K D D IE+ I
Sbjct: 352 TKSDAKYLDAIEKLI 366
>gi|430003796|emb|CCF19587.1| Putative ATP-dependent RNA helicase [Rhizobium sp.]
Length = 503
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 148/311 (47%), Gaps = 15/311 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEEQNRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM +QKL D Q + S + + + + A L+ L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVSLPSSTATTVTQRLVAAHNKDYEKRATLRDL 239
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
++FCN + L + S HG++ + R L F+ DG+
Sbjct: 240 IKEQEDLKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQSFR--DGEI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLDL DV HV FD P+++ DY+HR GRT R G GK +LV + D
Sbjct: 298 QLLVASDVAARGLDLPDVGHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTRSDAKY 357
Query: 311 ADRIEEAIRKN 321
D IE+ I K
Sbjct: 358 LDAIEKLIDKT 368
>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
NCTC 13177]
Length = 430
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKS--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|426199199|gb|EKV49124.1| hypothetical protein AGABI2DRAFT_65810 [Agaricus bisporus var.
bisporus H97]
Length = 494
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 148/281 (52%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + ++R R+T + GG PQ L +++ + TPGR
Sbjct: 135 PIALILAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIAIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G I YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLESGKTNLKRITYLVLDEADRMLDMGFEPQIRKIVGQI-----RPD---RQTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL + + + + ++ +++ K L++ L+ ++
Sbjct: 247 ATWPKDVQKLASDFLKDMIQVNIGSMDLTANHNIQQIVEVCSDFEKRSKLIKHLDQISAE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L + + HG+ +ER L +FK G P L+ T
Sbjct: 307 NAKVLIFVGTKRIADDITKYLRTDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 365 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGLKG 405
>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
B7210]
Length = 427
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKS--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|409078207|gb|EKM78570.1| hypothetical protein AGABI1DRAFT_100622 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 494
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 148/281 (52%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + ++R R+T + GG PQ L +++ + TPGR
Sbjct: 135 PIALILAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIAIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G I YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLESGKTNLKRITYLVLDEADRMLDMGFEPQIRKIVGQI-----RPD---RQTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL + + + + ++ +++ K L++ L+ ++
Sbjct: 247 ATWPKDVQKLASDFLKDMIQVNIGSMDLTANHNIQQIVEVCSDFEKRSKLIKHLDQISAE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L + + HG+ +ER L +FK G P L+ T
Sbjct: 307 NAKVLIFVGTKRIADDITKYLRTDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 365 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGLKG 405
>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
DM98]
Length = 434
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|387018192|gb|AFJ51214.1| putative ATP-dependent RNA helicase DDX5-like [Crotalus adamanteus]
Length = 600
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYGRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQI-----RPDR---QTLMWS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ + +E L++++E
Sbjct: 276 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 332
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 333 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 390
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 391 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 446
>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Stappia aggregata IAM 12614]
gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Stappia aggregata IAM 12614]
Length = 505
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 25/316 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG Q+ L+ D+++
Sbjct: 93 RARMPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLDRGTDVLIA 152
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 153 TPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTR---------- 202
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLR---TSTLHKKIASARHDFIKLSGSEN--KLEA 186
QT+ SATM +Q+L + Q A + TS+ + +A F+K + S++ K A
Sbjct: 203 QTLFFSATMPPEIQRLTETFLQNPARIEVAPTSSTAENVAQ----FLKATDSKDYEKRAA 258
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L +LE + N + VFCN V L ++ + HG++ + R+ L+ F+
Sbjct: 259 LRDLLEGAEDLQNAI-VFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRK 317
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G LV +D+AARGLD+ +V HV FD P N+ DY+HR GRT R G KG +LV
Sbjct: 318 --GTIKLLVASDVAARGLDIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLVTG 375
Query: 306 KDVLLADRIEEAIRKN 321
+D D I+ I+K+
Sbjct: 376 EDQKYLDAIQTLIKKD 391
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 21/310 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 116 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 175
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 176 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 225
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + +++L + + + + + R + L +K A++ +L+
Sbjct: 226 SATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQ-MVYLVEDGHKQAAVVHLLKQRAE 284
Query: 197 KG--NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF N+ + SR H E I+ HG+ ER++ L FK+ G
Sbjct: 285 QGLSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLEGFKS--GTIDA 341
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKDVLLA 311
LV TD+AARGLD+ D+ V+ FD P ++ DY+HR GRT R GA G S+ V D L
Sbjct: 342 LVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDERLL 401
Query: 312 DRIEEAIRKN 321
IE+ I+++
Sbjct: 402 SDIEKLIKRS 411
>gi|410692807|ref|YP_003623428.1| RNA helicase [Thiomonas sp. 3As]
gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
Length = 488
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 160/304 (52%), Gaps = 14/304 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K+ + H R V GG + PQ+ L +D++V TPGR+
Sbjct: 93 RALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTGVDLLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + G ++++VLDEAD M D GF PD+++ L L + + T+L SA
Sbjct: 153 LDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRT--------TLLFSA 204
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + +++L Q + + + + ++ ++K L+Q+L +
Sbjct: 205 TFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVE-EDDKRATLVQLLRD--NPL 261
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF N+ + + L + I HG+ ER+ L FK G+ LV TD
Sbjct: 262 PQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKR--GEIQALVATD 319
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ +D P ++ DY+HR GRT R GA G +L +D IE+
Sbjct: 320 VAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKL 379
Query: 318 IRKN 321
I++
Sbjct: 380 IKRQ 383
>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
Length = 627
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 155/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q ++ ++V GTP
Sbjct: 270 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGTP 329
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 330 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 385
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + FI+++ +K E LL +L+ +
Sbjct: 386 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLLDLLKTT 444
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 445 GSE--RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVL 500
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 501 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 549
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 21/310 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ D+L ++++V TPGR+
Sbjct: 116 RALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRL 175
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ ++ ++ LVLDEAD M D GF PD+++ L+P QT+L
Sbjct: 176 LDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAHR----------QTLLF 225
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + +++L + + + + + R + L +K A++ +L+
Sbjct: 226 SATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQ-MVYLVEDGHKQAAVVHLLKQRAE 284
Query: 197 KG--NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF N+ + SR H E I+ HG+ ER++ L FK+ G
Sbjct: 285 QGLSRQCIVFVNSKIGCSRLARHLEREG-INAAAIHGDKTQTERMQTLEGFKS--GTIDA 341
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKDVLLA 311
LV TD+AARGLD+ D+ V+ FD P ++ DY+HR GRT R GA G S+ V D L
Sbjct: 342 LVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYVPGNDERLL 401
Query: 312 DRIEEAIRKN 321
IE+ I+++
Sbjct: 402 SDIEKLIKRS 411
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 150/307 (48%), Gaps = 14/307 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R +A+VL PTREL+ QV H V GG PQ L +VVGTP
Sbjct: 80 RTTQALVLAPTRELALQVAEAFSRYGAHLHVNVLPVYGGSSYGPQLAGLKRGAQIVVGTP 139
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ H+E G + + Y+VLDEAD M GF D+ + L A P + Q L
Sbjct: 140 GRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDVERIL------ADTPEYK--QVAL 191
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM A++K+ + G + + + + +I++S K++AL ++LE +
Sbjct: 192 FSATMPPAIKKITSKYLHGPVEVTVKSKTQTAENITQRYIQVS-YPRKMDALTRLLE--V 248
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G+ ++VF T ++ V L S +G++P R +N K DG LV
Sbjct: 249 EQGDAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLK--DGSLDILV 306
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD++ + HV+ FD P + Y+HR GRT R G G V ++ L I
Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLKSI 366
Query: 315 EEAIRKN 321
E R+
Sbjct: 367 ERVTRQK 373
>gi|428296967|ref|YP_007135273.1| DEAD/DEAH box helicase [Calothrix sp. PCC 6303]
gi|428233511|gb|AFY99300.1| DEAD/DEAH box helicase domain protein [Calothrix sp. PCC 6303]
Length = 489
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 158/315 (50%), Gaps = 34/315 (10%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R RA++L PTREL+ QV + RS + GG + PQ+ L N +D++V TPG
Sbjct: 109 RIRALILTPTRELAAQVQESVHDYGKYLNLRSMAMFGGVSINPQKQRLRNGVDILVATPG 168
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVL 135
R+L H++ G + I+ LVLDEAD M D GF DIR+ L L K R Q +L
Sbjct: 169 RLLDHVQQGTVNLSGIEVLVLDEADRMLDMGFIRDIRRILSLLPKER---------QNLL 219
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTS-------TLHKKIASARHDFIKLSGSENKLEALL 188
AT + ++++L + + T+ +KI HD +L
Sbjct: 220 FFATFSDSIKELAAGLLNRPTMIEVARRNVTADTVSQKIYQVDHDKKRL----------- 268
Query: 189 QVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
+L + K N +V+VF T + + + L E++I + HG R L KFKN
Sbjct: 269 -LLAHLIKKDNWYQVLVFTRTKHGADRLVKQLGEDRIQALAIHGNKSQSARTAALAKFKN 327
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G LV TD+AARGLD+ D+ HV+ FD P DY+HR GRT R GAKG+ SLV
Sbjct: 328 --GTLQVLVATDIAARGLDISDLPHVVNFDLPNVPEDYVHRIGRTGRAGAKGEAVSLVCT 385
Query: 306 KDVLLADRIEEAIRK 320
+ L IE+ I K
Sbjct: 386 DEQPLLAEIEKLIAK 400
>gi|332297922|ref|YP_004439844.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
12168]
gi|332181025|gb|AEE16713.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
12168]
Length = 610
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 156/298 (52%), Gaps = 12/298 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A+V+ PTREL+ QV + AK + ++ GG Q L N +++++GTPGR+
Sbjct: 73 KALVMVPTRELAVQVEQEAKKLLEFTPLKAGSFYGGVGYTQQTAMLKNNVNIIIGTPGRV 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ E G M + +LV+DEAD MFD GF PD+R + L P QT+L SA
Sbjct: 133 IDLQESGAMDLSSVAFLVVDEADRMFDMGFYPDLRTLIKVL------PKTHDRQTMLFSA 186
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T+ V+ L E + + + + +S S++K++ LL +L+ K
Sbjct: 187 TLNTYVKNLAWEYTEEAKEITIEAEQLTVEEIDQVLLHVS-SDSKMKLLLGILQ--HEKP 243
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
V+VFCNT S V L N I + G++P +R++ L FK G LV TD
Sbjct: 244 ESVIVFCNTKRSCEVVAKRLQLNGIESEFIIGDLPQAKRLQVLESFKR--GSLKCLVATD 301
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
+AARG+D+ D+ V+ +D P S +Y+HR GRTAR G GK + +++DV IE
Sbjct: 302 VAARGIDVNDLAMVVNYDLPNESENYVHRIGRTARAGKSGKAYTFCSEQDVYNLPAIE 359
>gi|126440586|ref|YP_001057787.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668]
gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
668]
Length = 485
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|53718338|ref|YP_107324.1| ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243]
gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|126450332|ref|YP_001081986.1| ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247]
gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|386862863|ref|YP_006275812.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418392348|ref|ZP_12968130.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418537531|ref|ZP_13103166.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418541949|ref|ZP_13107410.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418548277|ref|ZP_13113396.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|418554393|ref|ZP_13119180.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
K96243]
gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|385349447|gb|EIF56014.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385356616|gb|EIF62709.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385358294|gb|EIF64306.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|385370257|gb|EIF75512.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385375424|gb|EIF80195.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385659991|gb|AFI67414.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 485
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|209694846|ref|YP_002262774.1| helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238]
gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
LFI1238]
Length = 434
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 162/306 (52%), Gaps = 14/306 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+EQ+ S + + + T V GG ++ QE +L+ +D++V TP
Sbjct: 73 RSARALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERALDPGVDILVATP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+ +HIE+GN+ ++++LV DEAD M D GF IR ++ + S P Q +L
Sbjct: 133 GRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVN---SAP-----QIML 184
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT + + KL + + + + + H + E K E L +++
Sbjct: 185 FSATSSAQMNKLASDILRKPKRISVDRENMTATTISHVVYPVD-EERKTELLSELI--GR 241
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF N ++ + L + I V HG+ R L +FK +G +V
Sbjct: 242 KNWQQVLVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFK--EGKARVMV 299
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ HVI +D P + DY+HR GRT R G KG S V++++ L ++
Sbjct: 300 ATDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVVQV 359
Query: 315 EEAIRK 320
E I++
Sbjct: 360 ETLIQQ 365
>gi|345872285|ref|ZP_08824222.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343919163|gb|EGV29916.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 159/307 (51%), Gaps = 22/307 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ RRPRA+VL PTREL+ QV + + RS + GG + PQ D L +D++V
Sbjct: 71 RQRRPRALVLTPTRELAAQVGESVRLYGQNLPLRSLQIFGGVGMGPQVDKLRRGVDILVA 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQ 132
TPGR+L H GN+ G I+ LVLDEAD M D GF DIR+ L L K R Q
Sbjct: 131 TPGRLLDHQGQGNVDLGGIEILVLDEADRMLDMGFIHDIRRILKSLPKQR---------Q 181
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SAT ++ +++L A + R +T + ++ H +K ++ ALL
Sbjct: 182 NLLFSATYSREIEQLATGLLSNPARIEVARRNTAAETVSQLVHPVVK-----DQKRALLS 236
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L S +V+VF T + + + L + I+ HG R L FK+ G
Sbjct: 237 HLIHSGGL-QQVLVFTRTKHGANRLAQQLITDGITAAAIHGNKSQGARTRALADFKS--G 293
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
TLV TD+AARGLD+D + +V+ ++ P S DY+HR GRT R G++G SLV +
Sbjct: 294 AVRTLVATDIAARGLDIDRLPNVVNYELPNVSEDYVHRIGRTGRAGSEGAAVSLVGPDEY 353
Query: 309 LLADRIE 315
L IE
Sbjct: 354 GLLAGIE 360
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 166/312 (53%), Gaps = 19/312 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+ A VL PTREL+ Q+ + +++ R ++ GG L Q +L +VV
Sbjct: 84 EPKGLFACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHVVVA 143
Query: 74 TPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQG 130
TPGR+LQH+E+ +K+LVLDEAD + D FGP I K L +P K R
Sbjct: 144 TPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIP-KERT------- 195
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
T L SATMT V KL + S ++ +++ ++ L ++K+ +L
Sbjct: 196 --TYLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYL-LVPLKDKV-VMLIY 251
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L SL++ N +++F T+ +R + L V HG++ +R+ L KFK+ G
Sbjct: 252 LANSLAQ-NSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKS--GG 308
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+A+RGLD+ VD VI +D P +S DY+HR GRTAR G GK +LV + DV
Sbjct: 309 RKILVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVE 368
Query: 310 LADRIEEAIRKN 321
L RIE+ I K
Sbjct: 369 LLQRIEKVIGKK 380
>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 537
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 157/308 (50%), Gaps = 20/308 (6%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PR ++L PTREL+ QV ++ H S ++ GG + PQ +L +D++V TPG
Sbjct: 79 KPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQISALKKRVDILVATPG 138
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+ + ++ LVLDEAD M D GF DIRK L L + Q +L
Sbjct: 139 RLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQR--------QNLLF 190
Query: 137 SATMTKAVQKLVDEECQGIAHLR--TSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEP 193
SAT + ++ L + G+ H + AS R + + G + K E L +++
Sbjct: 191 SATFSDEIRDLAN----GLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELLAWLIKE 246
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF T + + + +L ++ I HG R L++FK DG P
Sbjct: 247 --KQWFQALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFK--DGSLPV 302
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+D + V+ F+ P DY+HR GRT R GA G SLV ++V L
Sbjct: 303 LVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLVDGEEVKLLT 362
Query: 313 RIEEAIRK 320
IE IR+
Sbjct: 363 AIERLIRR 370
>gi|444920074|ref|ZP_21239918.1| ATP-dependent RNA helicase RhlB [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508941|gb|ELV09109.1| ATP-dependent RNA helicase RhlB [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 528
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 152/304 (50%), Gaps = 12/304 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R P A+++ PTREL+ Q++ A+ + + R + + GG Q L +D+V+GT
Sbjct: 81 RGPFAIIMAPTRELALQIYEDAQMLGRYTGLRFSCIYGGTGYEKQRHDLATDVDVVIGTV 140
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GRIL + G + +I+ +VLDEAD MFD GF DIR R P GQ Q +
Sbjct: 141 GRILDFYKQGELNLKEIEVVVLDEADRMFDLGFIADIRYLF-----RKMPPVGQR-QNMF 194
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT ++ + +L E ++ H + + + GS +KL L +L
Sbjct: 195 FSATFSQRILELAYEHMNMPEKVQIEAEHITADKIKQYLVHI-GSSDKLSLLFGILRKEQ 253
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + ++F NT + + ++L N G++P +R L FK +G +V
Sbjct: 254 PK--RTIIFVNTKRVAEEISNYLVANDYQAAVLSGDIPQNKRERLLESFK--EGKVSIMV 309
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGL + DV HVI +D P + DY+HR GRTAR G +G S ++ V I
Sbjct: 310 ATDVAARGLHISDVTHVINYDLPQDVEDYVHRIGRTARAGEEGTAISFACEEYVYSLPDI 369
Query: 315 EEAI 318
EE I
Sbjct: 370 EEYI 373
>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
SAVP1]
gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
SAVP1]
Length = 473
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 66 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 125
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 126 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 177
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 178 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 231
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 232 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 289
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 290 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 349
Query: 315 EEAIRK 320
E I++
Sbjct: 350 ERLIKR 355
>gi|297741203|emb|CBI32154.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 157/309 (50%), Gaps = 11/309 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ AK S+ R + GG + Q L +D++V TPGR
Sbjct: 17 PLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 76
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + ++YL LDEAD M D GF P IR+ + + P G QT+L S
Sbjct: 77 LVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMD---MPPRGVR-QTMLFS 132
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R +F++ S + L LL +
Sbjct: 133 ATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRENG 192
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G + +VF T + A++H+L N + HG+ QER L FK+ G P
Sbjct: 193 THGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKS--GATPI 250
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + LA
Sbjct: 251 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLAR 310
Query: 313 RIEEAIRKN 321
+ E ++++
Sbjct: 311 GLAELMQES 319
>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
Length = 485
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 160/308 (51%), Gaps = 20/308 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ + H RST+V GG + PQ L ++++V TPGR+
Sbjct: 87 RALMLTPTRELADQVYDNVAKYAKHTALRSTVVFGGVDMNPQTAELRRGVEILVATPGRL 146
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ + ++ LVLDEAD M D GF PD+++ L+P + QT+L
Sbjct: 147 LDHVQQKTVNLSQVQMLVLDEADRMLDMGFLPDLQRILNLLPAQR----------QTLLF 196
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + ++ + K A++ +L+
Sbjct: 197 SATFSGDIKKLAASYLRDPVTIEVARSNSASSNVTQQVFMVP-EARKQAAVVHLLKQRAE 255
Query: 197 KG--NKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF N+ L SR E I+ HG+ ER++ L FK G
Sbjct: 256 QGLPKQCIVFTNSKLGCSRLARQLEREG-INASAIHGDKTQSERMQTLEGFKQ--GTIDA 312
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ D+ VI FD P N+ DY+HR GRT R GA G SL A D L
Sbjct: 313 LVATDVAARGLDIADMPCVINFDLPYNAEDYVHRIGRTGRAGATGDAMSLCAPGDERLLA 372
Query: 313 RIEEAIRK 320
IE+ +++
Sbjct: 373 DIEKLLKR 380
>gi|348521007|ref|XP_003448018.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Oreochromis niloticus]
Length = 633
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 161/308 (52%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 172 PICLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 231
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 232 LIDFLECGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 283
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ N LE L+++LE
Sbjct: 284 ATWPKEVRQLAEDFLKDYVQINIGALQ---LSANHNILQIVDVCNDLEKEDKLIRLLEEI 340
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+F+ G P
Sbjct: 341 MSEKENKTIIFVETKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRY--GKAPI 398
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ A
Sbjct: 399 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAS 458
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 459 DLISVLRE 466
>gi|336370677|gb|EGN99017.1| hypothetical protein SERLA73DRAFT_137127 [Serpula lacrymans var.
lacrymans S7.3]
Length = 332
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 149/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ + +R R+T + GG PQ L +++V+ TPGR
Sbjct: 16 PIALVLAPTRELAVQIQQECTKFGSSSRIRNTAIYGGAPKGPQIRDLQRGVEVVIATPGR 75
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E I YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 76 LIDMLETQKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQI-----RPD---RQTLMFS 127
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + + ++ +++ K L++ L+ ++
Sbjct: 128 ATWPKDVQKLANDFLKDMIQVNIGSMELTANHNIQQIVEVCSDFEKRAKLIKHLDQISAE 187
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L +FK G P L+ T
Sbjct: 188 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 245
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 246 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKG 286
>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 488
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 160/304 (52%), Gaps = 14/304 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K+ + H R V GG + PQ+ L +D++V TPGR+
Sbjct: 93 RALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTGVDLLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + G ++++VLDEAD M D GF PD+++ L L + + T+L SA
Sbjct: 153 LDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRT--------TLLFSA 204
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + +++L Q + + + + ++ ++K L+Q+L +
Sbjct: 205 TFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVE-EDDKRATLVQLLRD--NPL 261
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF N+ + + L + I HG+ ER+ L FK G+ LV TD
Sbjct: 262 PQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKR--GEIQALVATD 319
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ +D P ++ DY+HR GRT R GA G +L +D IE+
Sbjct: 320 VAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKL 379
Query: 318 IRKN 321
I++
Sbjct: 380 IKRQ 383
>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
Length = 488
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|224369411|ref|YP_002603575.1| protein RhlE2 [Desulfobacterium autotrophicum HRM2]
gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
Length = 460
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 19/304 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PRA+VL PTREL+ QV K+ + R T+V GG + PQ D L +D++V TP
Sbjct: 71 RHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLKRGVDILVATP 130
Query: 76 GRILQHIE-DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQ 132
GR+L + ++ I++LV DEAD M D GF +I + LVP Q +
Sbjct: 131 GRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVP----------QDRR 180
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+L SAT T+ ++ L D+ + + T + +A + + L NK E L+ ++
Sbjct: 181 TMLFSATYTRQIRDLADKMLKTPEQIEV-TPNTTVAESIVQKVHLVEKSNKRELLIHLI- 238
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ S +V+VF T + + + L + +IS HG R L +FKN G+
Sbjct: 239 -TRSDWRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKN--GEIR 295
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + HV+ +D P + DY+HR GRT R G +G SLV+K++ +
Sbjct: 296 ILVATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVFL 355
Query: 312 DRIE 315
+E
Sbjct: 356 KSVE 359
>gi|336383448|gb|EGO24597.1| hypothetical protein SERLADRAFT_449372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 487
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 149/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ + +R R+T + GG PQ L +++V+ TPGR
Sbjct: 135 PIALVLAPTRELAVQIQQECTKFGSSSRIRNTAIYGGAPKGPQIRDLQRGVEVVIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E I YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLETQKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + + ++ +++ K L++ L+ ++
Sbjct: 247 ATWPKDVQKLANDFLKDMIQVNIGSMELTANHNIQQIVEVCSDFEKRAKLIKHLDQISAE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L +FK G P L+ T
Sbjct: 307 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 365 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKG 405
>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126454229|ref|YP_001065030.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a]
gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403517400|ref|YP_006651533.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei BPC006]
gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106a]
gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403073043|gb|AFR14623.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
BPC006]
Length = 485
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 168/314 (53%), Gaps = 27/314 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGRIL HI + G I +L+LDEAD M + GF DI + + + QT
Sbjct: 131 TPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIM--------ESTSEEKQT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM ++KL + ++ + IA L+ S KI A+H F +++KLEA+ +
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKI--AQHYF--AVKNKDKLEAICR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIEEAIR 319
++V +IE I+
Sbjct: 352 REVSSIRQIERIIK 365
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 168/314 (53%), Gaps = 27/314 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGRIL HI + G I +L+LDEAD M + GF DI + + + QT
Sbjct: 131 TPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIM--------ESTSEEKQT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM ++KL + ++ + IA L+ S KI A+H F +++KLEA+ +
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKI--AQHYF--AVKNKDKLEAICR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIEEAIR 319
++V +IE I+
Sbjct: 352 REVSSIRQIERIIK 365
>gi|338984023|ref|ZP_08633147.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium sp.
PM]
gi|338207051|gb|EGO95064.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium sp.
PM]
Length = 412
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 14/307 (4%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G + R PR+++L PTREL+ QV H + ++ GG + Q D L +D
Sbjct: 83 GSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVD 142
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+++ TPGR++ E G ++ D++ LV+DEAD M D GF PDI + + L
Sbjct: 143 VLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMR------ 196
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+ SATM +++L D + T + +A+ + + L + +K EAL +
Sbjct: 197 --QTLFFSATMAPEIRRLADAFLSNPKQI-TVSRPATVATTITEGLSLVATHDKREALRR 253
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ +VFCN + L ++ S HG++P R L +FK G
Sbjct: 254 LIR--TEDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKA--G 309
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G+ +L D
Sbjct: 310 EIRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADR 369
Query: 309 LLADRIE 315
D IE
Sbjct: 370 AAVDAIE 376
>gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
Length = 605
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
ML + RRP A++L PTREL+ QV A + + R+ GG + QE++L N
Sbjct: 74 MLAQGTESRRP-ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALKNG 132
Query: 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN 127
+D+++GTPGR++ + M + +LV+DEAD MFD GF PD+R L L +
Sbjct: 133 VDLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEER-- 190
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
QT+L SAT+ V+ L E + + + ++ ++ K+ L
Sbjct: 191 ----QTMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVA-ADQKMSLL 245
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L +L K ++FCNT ++ V L N +T G++P +R+ ++ FK
Sbjct: 246 LGILRN--EKPENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKA- 302
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G LV TD+AARG+D+ D+ VI +D P + +Y+HR GRTAR G G SL +++
Sbjct: 303 -GKLTCLVATDVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQ 361
Query: 307 DVLLADRIEEAI 318
DV IE+ I
Sbjct: 362 DVYNLPDIEKYI 373
>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 402
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 159/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RS ++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKN--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 154/317 (48%), Gaps = 21/317 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA----- 186
QT+ SATM ++++ + A + + + + GS EA
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRA 239
Query: 187 -LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ K ++FCN V L + HG++ +R L+ F+
Sbjct: 240 VLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFR 299
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+G LV +D+AARGLD+ V HV FD P + DY+HR GRT R G GK +L
Sbjct: 300 --EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCI 357
Query: 305 KKDVLLADRIEEAIRKN 321
+D D IE+ I+K+
Sbjct: 358 PRDEKALDAIEKLIQKD 374
>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|386350803|ref|YP_006049051.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|346719239|gb|AEO49254.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
Length = 799
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 150/296 (50%), Gaps = 14/296 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR+++L PTREL+ QV + + ++ GG + Q+ L+ +D+++
Sbjct: 69 KARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVLDRGVDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ E G+++ D+K LV+DEAD M D GF PD+ + + L + QT
Sbjct: 129 TPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLP--------KIRQT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+ SATM K +++L D +R K + I + SE K EAL Q+L
Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASE-KREALRQLLR- 238
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+FCN + L+ + + HG++P R E L KFK +
Sbjct: 239 -RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKR--AEVQL 295
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+VC+D+AARG+D+ +V HV FD P + DY+HR GRT R G G+ +L +D
Sbjct: 296 MVCSDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDA 351
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 22/307 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + +ST+V GG ++ Q +L ++++V TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVQTYGKYLPLKSTVVFGGVNIKEQIAALKGGVEILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E + ++ LVLDEAD M D GF PDI++ L+P K Q +L
Sbjct: 139 LDHVEQKTVNLSKVEILVLDEADRMLDMGFLPDIKRIIALLPAKR----------QNLLF 188
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH--DFIKLSGSENKLEALLQVLEPS 194
SAT ++KL D+ + + ++ A++ + I E K E L +++
Sbjct: 189 SATFAGEIKKLSDQLLTDPVLIEVA---RRNAASENVTQVIYPVDHERKRELLAHLIKS- 244
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+V+VF T + + + L ++ IS HG+ Q+R + L +FK DG L
Sbjct: 245 -ENLQQVLVFSRTKHGASRLAQQLEKDGISATAIHGDKSQQQRTQALAEFK--DGTVRVL 301
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + HV+ FD P DY+HR GRT R G+ G+ SLV ++ +
Sbjct: 302 VATDVAARGLDIDQLPHVVNFDLPNAPEDYVHRIGRTGRAGSSGEAISLVCADELRMLAE 361
Query: 314 IEEAIRK 320
IE +++
Sbjct: 362 IESMLKR 368
>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 408
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 160/312 (51%), Gaps = 20/312 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKS--STLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRKNES 323
IE I++ S
Sbjct: 359 RDIERLIKREIS 370
>gi|402218296|gb|EJT98373.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 476
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 17/304 (5%)
Query: 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ 80
VVL PTREL+ Q+ + +++ R ++ GG ++ PQ +L+ +VV TPGR+
Sbjct: 111 VVLAPTRELAYQISQQFEALGSTIGVRCAVLIGGVKMVPQAVALSKRPHIVVATPGRLQD 170
Query: 81 HIED--GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
H+E+ G + G +KYLV+DEAD + D FGP I L + + + T+L SA
Sbjct: 171 HLENTKGFSLRG-LKYLVMDEADRLLDLDFGPIIDTLLKAIPRQRN--------TMLFSA 221
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TMT V KL + + S+ ++ +++ ++ L+ + K L+ +L + G
Sbjct: 222 TMTTKVAKLQRTSLRNPVKVEVSSKYQTVSTLLQTYV-LTPAAVKEPQLVHLL--TTVSG 278
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+VF T++ + + L + HG++ +R+ +++FK E G LV TD
Sbjct: 279 LSTIVFVRTIHDATKLTLALRNLGFPAIPLHGDISQDKRLGAISRFKAEPGAI--LVATD 336
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+A+RGLD+ VD VI +D P NS DY+HR GRTAR G GK S+V + DV L RIE
Sbjct: 337 VASRGLDMPKVDAVINYDLPTNSKDYIHRVGRTARAGRAGKAISIVTQYDVELLQRIEHV 396
Query: 318 IRKN 321
I K
Sbjct: 397 IGKK 400
>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
Length = 710
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 154/290 (53%), Gaps = 13/290 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q+F A+ ++ R +V GG Q ++ ++V GTP
Sbjct: 354 QEPEAIIVAPTRELINQIFLEARKFAYGTCVRPVVVYGGVNTGFQLREISKGCNIVCGTP 413
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I+ G + ++YLVLDEAD M D GF PD+R+ + P + QT+L
Sbjct: 414 GRLLDVIQRGWIGLTKLRYLVLDEADRMLDMGFEPDMRRLVA----SPGMPPKENRQTLL 469
Query: 136 VSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +QKL + + L + + F++++ +K E LL L+
Sbjct: 470 FSATYPQDIQKLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVT-KYSKREQLLDFLK-- 526
Query: 195 LSKGN-KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ GN + MVF T + + FL + ++ T + HG+ +ER + L FK G CP
Sbjct: 527 -TIGNERTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKA--GKCPI 583
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
LV T +AARGLD+ +V HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 584 LVATSVAARGLDIPEVQHVVNFDLPKNIDEYVHRIGRTGRCGNIGRAVSF 633
>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
Length = 459
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F K+ GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQY-FYKVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT ++V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|424868021|ref|ZP_18291789.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'5-way CG']
gi|387221616|gb|EIJ76157.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
Length = 444
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 151/300 (50%), Gaps = 11/300 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R RA+VL PTREL+ Q+ + AK + + + ++ GG QE +L D+VV TPG
Sbjct: 72 RNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRNWDIVVATPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+ N+ + +++DEAD M D GF PDI + L +G Q++L
Sbjct: 132 RLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLP--------KGRQSLLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT +Q+L +R K ++I +S KL L +VL+ S
Sbjct: 184 SATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKS 243
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +V++F T S+ + LN+ + HG+ R L++F+ GD LV
Sbjct: 244 ETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRR--GDLKVLVA 301
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+D + HVI +D P + DY+HR GRT R G G+ S D + IE
Sbjct: 302 TDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIE 361
>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 533
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 156/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 99 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 158
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 159 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 208
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ S NK L
Sbjct: 209 QTLFFSATMPPEIQKLADRFLQNPTRIEVA---KPSSTAKTVTQRIVASHNKDYEKRAVL 265
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 266 RDLVRAEEAEL---KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 322
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+ DG LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV
Sbjct: 323 R--DGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLV 380
Query: 304 AKKDVLLADRIEEAI 318
K D D IE+ I
Sbjct: 381 TKSDAKYLDAIEKLI 395
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 155/304 (50%), Gaps = 14/304 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KPR+ RA++L PTREL+ QV ++ H + +V GG + Q SL D+VV
Sbjct: 72 KPRKIRALILAPTRELAAQVHDSVRAYGKHLPLFAEVVVGGVSINGQIRSLQRGCDIVVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L H+ N+ ++ LVLDEAD M D GF PDIRK + L + Q+
Sbjct: 132 TPGRLLDHLLQKNIELSHLEILVLDEADRMLDMGFLPDIRKIIGHLPRQK--------QS 183
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT + ++ L + A + + H A + E K LL L
Sbjct: 184 LLFSATFPEEIRGLAKQLLHEPAEVSVAP-HNTTADNIKELCYGIAKERK-RGLLSYLIG 241
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S + +V+VF T + + ++ L ++ I T HG+ R L+ FK G
Sbjct: 242 S-NNWKQVLVFVRTKHGADRLEKQLVKDGIRTAALHGDKSQGARTRALDYFKT--GQVAA 298
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+D + HVI FD P DY+HR GRT R GA G+ SLV ++
Sbjct: 299 LVATDIAARGLDIDELPHVINFDLPQVPEDYIHRIGRTGRAGANGEAVSLVCPEEAYQLA 358
Query: 313 RIEE 316
+IE+
Sbjct: 359 QIEK 362
>gi|343505788|ref|ZP_08743340.1| putative ATP-dependent RNA helicase [Vibrio ichthyoenteri ATCC
700023]
gi|342806221|gb|EGU41455.1| putative ATP-dependent RNA helicase [Vibrio ichthyoenteri ATCC
700023]
Length = 426
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 168/317 (52%), Gaps = 25/317 (7%)
Query: 11 VLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
+L KP+ + RAV+L PTREL Q+ + + + + +S + GG ++ Q+ +L
Sbjct: 63 ILDKPKSRNRHQARAVILAPTRELVAQIAQNVRDYTKYTELKSVAIYGGEKMASQQKALE 122
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+D++V TPGR+++H+E N+ ++++LV DEAD M D GF I K + +K +K
Sbjct: 123 QGVDILVATPGRLIEHLELKNVSLVNLEFLVFDEADRMLDMGFISAIEKIMQGVK---TK 179
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSEN 182
P QT+L SAT + + KL E + IA R +T + IA + E
Sbjct: 180 P-----QTMLFSATFSAQMNKLAGEILRAPKRIAVARENTTAETIAHVVYPV----EQER 230
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K E L +++ +V+VF N ++ + L + I V HG+ R L+
Sbjct: 231 KRELLSELI--GRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALD 288
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+FK +G ++ TD+AARGLD+ ++ HV+ FD P + DY+HR GRT R G KG S
Sbjct: 289 EFK--EGKARVMIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQKGNAIS 346
Query: 302 LVAKKDVLLADRIEEAI 318
V +++ L ++E I
Sbjct: 347 FVNREEELTLQQVETLI 363
>gi|451971154|ref|ZP_21924376.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus E0666]
gi|451932970|gb|EMD80642.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus E0666]
Length = 459
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F K+ GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQY-FYKVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT ++V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|383852804|ref|XP_003701915.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Megachile
rotundata]
Length = 609
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 164/324 (50%), Gaps = 23/324 (7%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P A++L PTREL++Q+ VA + R+T + GG PQ
Sbjct: 171 AIVHIIHQPRLSPGDGPVALILAPTRELAQQIQEVANCFGESSGVRNTCIFGGAPKGPQA 230
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L +++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 231 HDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 288
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ I++
Sbjct: 289 ---RPD---RQVLMWSATWPKEVRALAEDFLTDYMHLNIGSL---TLSANHNIIQIVDVC 339
Query: 182 NKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ E L++ E K NK ++F T + + + ++ HG+ QER
Sbjct: 340 QEFEKDLKLYRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQER 399
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
L +FK+ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 400 DHVLQEFKS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQT 457
Query: 297 GKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 458 GTAYAFFTTHNMKHAGDLIEVLRE 481
>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
Length = 510
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 14/307 (4%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G + R PR+++L PTREL+ QV H + ++ GG + Q D L +D
Sbjct: 90 GSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVD 149
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+++ TPGR++ E G ++ D++ LV+DEAD M D GF PDI + + L
Sbjct: 150 VLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMR------ 203
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+ SATM +++L D + T + +A+ + + L + +K EAL +
Sbjct: 204 --QTLFFSATMAPEIRRLADAFLSNPKQI-TVSRPATVATTITEGLSLVATHDKREALRR 260
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ +VFCN + L ++ S HG++P R L +FK G
Sbjct: 261 LIR--TEDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKA--G 316
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G+ +L D
Sbjct: 317 EIRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADR 376
Query: 309 LLADRIE 315
D IE
Sbjct: 377 AAVDAIE 383
>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
EO147]
Length = 395
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 160/312 (51%), Gaps = 20/312 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FK+
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSS--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRKNES 323
IE I++ S
Sbjct: 359 RDIERLIKREIS 370
>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 518
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 161/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 77 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 137 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 189 TFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIR--Q 242
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 243 HSWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 300
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 301 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 360
Query: 315 EEAIRK 320
E+ I++
Sbjct: 361 EKLIKR 366
>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 498
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 150/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 135 PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + + ++ +++ K L++ L+ ++
Sbjct: 247 ATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHLDQISAE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L +FK G P L+ T
Sbjct: 307 NAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 365 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKG 405
>gi|421178877|ref|ZP_15636479.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|404547823|gb|EKA56806.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
Length = 449
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K+E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKVELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|374572806|ref|ZP_09645902.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374421127|gb|EHR00660.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 505
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 156/299 (52%), Gaps = 18/299 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+ R +VL PTRELS Q+ + H R ST+ GG + Q SL ++++V
Sbjct: 78 QPKTARVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVLVA 137
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L ++ + G +++LVLDEAD M D GF DIRK + +P+K
Sbjct: 138 TPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKR---------- 187
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM K + +L D + A + + + + + I++ S K L Q+L
Sbjct: 188 QTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQVDFSA-KPAFLAQLL 246
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + N+ +VF T + + V L + I HG R L +F+ G+
Sbjct: 247 K--QEQVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRERTLAQFRT--GEI 302
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
TLV TD+AARG+D+D + HVI FD P Y+HR GRTAR GA+G SLVA + L
Sbjct: 303 RTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEEL 361
>gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
gi|409911087|ref|YP_006889552.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
Length = 443
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 12/305 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PRA++L PTREL Q+ + A+ + H F + GG Q+++L D+VVGTP
Sbjct: 73 RHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ +++ +I+ LV+DEAD MFD GF D+R L L P Q ++
Sbjct: 133 GRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRL------PPYDKRQNLM 186
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT+ + V +L E + T + A + G + K LL +L
Sbjct: 187 FSATLNQRVMELA-YEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEG 245
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ + M+F NT + +D LN N G+V ++R++ L FK+ G P ++
Sbjct: 246 ME--RTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKS--GKLPIMI 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+A+RGL +D V HVI +D P ++ DY+HR GRTAR GA+GK S+ + + I
Sbjct: 302 ATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLEAI 361
Query: 315 EEAIR 319
E I+
Sbjct: 362 HEYIK 366
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 155/287 (54%), Gaps = 14/287 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL+EQ+ + + + R++++ GG Q+ L D+V+ TPGR+
Sbjct: 82 RMLVLTPTRELAEQISKNVIAYADGLPLRTSLIYGGVDFNAQKHELMRGADIVIATPGRL 141
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E + +++L+LDEAD M D GF D+ K L L +R Q++L SA
Sbjct: 142 LDHVEQRTINLNQVEFLILDEADRMLDMGFMLDLLKILAQLPSRR--------QSLLYSA 193
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++ L + + ++ + ++ + +S +E K ALL +L +
Sbjct: 194 TFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAE-KNAALLYLL--ASRNF 250
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
N V++F N + + ++ +LN +S + HG+ ER + LN FK+ C LV TD
Sbjct: 251 NNVIIFSNRKITCKNLERYLNNLDLSAQSLHGDKTQSERTKALNLFKS--SKCNILVATD 308
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+AARGLD+ DVD VI ++ P S DY+HR GRT R G KG S+ +
Sbjct: 309 VAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYS 355
>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
gi|91206540|sp|Q4IF76.1|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
Length = 555
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 153/287 (53%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ K +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 208 PIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 267
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 268 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTLMWS 319
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + Q + ++ +++ K + +++ +E + +
Sbjct: 320 ATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHMEKVMEN 379
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER L++FK G P +V
Sbjct: 380 KENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVA 437
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GA G +L
Sbjct: 438 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITL 484
>gi|343510871|ref|ZP_08748064.1| putative ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342800061|gb|EGU35605.1| putative ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
Length = 426
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 168/317 (52%), Gaps = 25/317 (7%)
Query: 11 VLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
+L KP+ + RAV+L PTREL Q+ + + + + +S + GG ++ Q+ +L
Sbjct: 63 ILDKPKSRNRHQARAVILAPTRELVAQIAQNVRDYTKYTELKSVAIYGGEKMASQQKALE 122
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+D++V TPGR+++H+E N+ ++++LV DEAD M D GF I K + +K +K
Sbjct: 123 QGVDILVATPGRLIEHLELKNVSLVNLEFLVFDEADRMLDMGFISAIEKIMQGVK---TK 179
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSEN 182
P QT+L SAT + + KL E + IA R +T + IA + E
Sbjct: 180 P-----QTMLFSATFSAQMNKLAGEILRAPKRIAVARENTTAETIAHVVYPV----EQER 230
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K E L +++ +V+VF N ++ + L + I V HG+ R L+
Sbjct: 231 KRELLSELI--GRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALD 288
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+FK +G ++ TD+AARGLD+ ++ HV+ FD P + DY+HR GRT R G KG S
Sbjct: 289 EFK--EGKARVMIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQKGNAIS 346
Query: 302 LVAKKDVLLADRIEEAI 318
V +++ L ++E I
Sbjct: 347 FVNREEELTLQQVETLI 363
>gi|408400620|gb|EKJ79698.1| hypothetical protein FPSE_00152 [Fusarium pseudograminearum CS3096]
Length = 558
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ K +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 211 PIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 270
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 271 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTLMWS 322
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTL----HKKIASARHDFIKLSGSENKLEALLQVLEP 193
AT K V+ L + Q + ++ + +I ++ + ++ + +V+E
Sbjct: 323 ATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQVVEVVTEMEKRDRMIKHMEKVME- 381
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+K NK+++F T + + FL ++ ++ HG+ ER L++FK G P
Sbjct: 382 --NKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPI 437
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
+V TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GA G +L
Sbjct: 438 MVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITL 487
>gi|383769279|ref|YP_005448342.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
gi|381357400|dbj|BAL74230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
Length = 526
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 156/301 (51%), Gaps = 22/301 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+ R +VL PTRELS Q+ + H R ST+ GG + Q SL +D++V
Sbjct: 86 QPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVDVLVA 145
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L ++ + +++LVLDEAD M D GF DIRK + +P+K
Sbjct: 146 TPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKR---------- 195
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM K + +L D + A + + + + + I++ S K L Q+L
Sbjct: 196 QTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQVDFSA-KPAFLAQLL 254
Query: 192 --EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
EP N+ +VF T + + V L + I HG R L +F++ G
Sbjct: 255 KQEPV----NRALVFTRTKHGADKVVKALEKAGIPASAIHGNKSQNHRERTLAQFRS--G 308
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D TLV TD+AARG+D+D + HVI FD P Y+HR GRTAR GA+G SLVA +
Sbjct: 309 DIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEE 368
Query: 309 L 309
L
Sbjct: 369 L 369
>gi|386813381|ref|ZP_10100605.1| DEAD/DEAH box helicase [planctomycete KSU-1]
gi|386402878|dbj|GAB63486.1| DEAD/DEAH box helicase [planctomycete KSU-1]
Length = 441
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 149/301 (49%), Gaps = 15/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+++ PTREL+EQ+ + R RS V GG +RPQ L ++ V PGR+
Sbjct: 72 RALIIAPTRELAEQIHEAIGGLGQQTRLRSVTVYGGVNMRPQVQKLRGKAEIAVSCPGRL 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L HI G + ++ LVLDEAD MFD GF PDIRK L L + QT+ SA
Sbjct: 132 LDHIRQGTIDLSRLEVLVLDEADRMFDMGFLPDIRKILKHLPAQR--------QTLFFSA 183
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM +++L + A ++ + + + H + E L+ L + + +
Sbjct: 184 TMPDDIRRLAHDILHTPATVQVNHT-MPVTTISHALYPV---EQHLKTPLLMALLNHTDM 239
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
V+VF T + ++ V H L S+ + G + +R LN F+N G LV TD
Sbjct: 240 ESVLVFTRTKHRAKQVAHQLGRAGYSSTSLQGNLSQSQRQAALNGFRN--GSFKILVATD 297
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+ + HVI +D P S Y HR GRT R G +L+ ++D + IE
Sbjct: 298 IAARGIDVSRISHVINYDMPDTSDAYTHRIGRTGRAAKTGDAFTLITREDAQMVRAIENV 357
Query: 318 I 318
+
Sbjct: 358 L 358
>gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
Length = 498
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 159/317 (50%), Gaps = 24/317 (7%)
Query: 11 VLMKPR-RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
++ KPR RA+VL PTREL+ Q+ + ++ H V GG + PQE + + +D
Sbjct: 65 LMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHAFRSGVD 124
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR+L H ++YLVLDEAD M D GF P+I+K L L NR
Sbjct: 125 VIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKR----- 179
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEA 186
QT+ SATM + L E L R + K I A + S+ A
Sbjct: 180 --QTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPV-----SQELKSA 232
Query: 187 LLQVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
LL L L +G+ + +VF T + + + L I HG +R + L F
Sbjct: 233 LLVAL---LKRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGF 289
Query: 245 KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K DG LV TD+AARG+D++ + HV+ FD P+ + DY+HR GRTAR A G+ + V
Sbjct: 290 K--DGSYQVLVATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFV 347
Query: 304 AKKDVLLADRIEEAIRK 320
+ ++ IE AI++
Sbjct: 348 SPEEEGELKLIERAIKR 364
>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
intestinalis]
gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
intestinalis]
Length = 585
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 154/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VLCPTREL++QV VA R+T V GG PQ L ++V+ TPGR
Sbjct: 188 PIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLERGCEIVIATPGR 247
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 248 LIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQI-----RPD---RQTLMWS 299
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K VQKL ++ + H++ +++ SA H+ +++ + K E L++++E
Sbjct: 300 ATWPKEVQKLANDFLRDNVHIQIGSVN---ISANHNILQIVDVCTEDEKSEKLMRLMEEI 356
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + NK ++F T + + + + HG+ ER LN+F+ G P
Sbjct: 357 MGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRT--GKSPI 414
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+A+RGLD+ D+ VI FDFP DY+HR GRTAR G + + +
Sbjct: 415 LVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANA 470
>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 484
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L +FKN
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNS--TLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
gi|156630859|sp|A5A6J2.1|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
Full=DEAD box protein 5
gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
Length = 614
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L ++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|124267275|ref|YP_001021279.1| ATP-dependent RNA helicase 1 [Methylibium petroleiphilum PM1]
gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
PM1]
Length = 453
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV + HA+ S ++ GG ++PQ D L +D++V TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQIDRLKRGVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H + + ++ VLDEAD M D GF DI+K L + + Q++L SA
Sbjct: 139 LDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVPKQK--------QSLLFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D Q I R ++ + IA H + + K E L +++
Sbjct: 191 TFSDEIKTLADRLLNSPQVIEVARRNSTVETIAQKIHPVDR----DKKKELLAHLIKS-- 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
++V+VFC + + + +LN+ +I+ + HG R + L FK+ G LV
Sbjct: 245 QDWHQVLVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKS--GALQVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLADR 313
TD+AARG+D+D + HV+ F+ P S DY+HR GRT R GA G+ SLV +D L D
Sbjct: 303 ATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDGFLRD- 361
Query: 314 IEEAIRKN 321
IE+ I+++
Sbjct: 362 IEKLIKRS 369
>gi|408787040|ref|ZP_11198773.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|408486993|gb|EKJ95314.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 498
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 157/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ + NK L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPVRVEVA---KPSSTAKTVAQRIVAAHNKDYEKRAVL 236
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 237 RDLVRAEEAELKNA---IIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 293
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K DG+ LV +D+AARGLD+ DV HV FD P++S DY+HR GRT R G GK ++V
Sbjct: 294 K--DGNLKLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIV 351
Query: 304 AKKDVLLADRIEEAI 318
+ D D IE+ I
Sbjct: 352 TRSDTKYLDAIEKLI 366
>gi|224073176|ref|XP_002304009.1| predicted protein [Populus trichocarpa]
gi|222841441|gb|EEE78988.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 154/308 (50%), Gaps = 11/308 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ + + GG + Q L +D++V TPGR
Sbjct: 42 PLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPIHQQLRELERGVDILVATPGR 101
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + IKYL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 102 LVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIV----EQMDMPRPGLRQTMLFS 157
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R +F+ + L LL +
Sbjct: 158 ATFPKEIQRLASDFLSTYIFLAVGRVGSSTDLIVQRVEFVYEPDKRSHLMDLLHAQRANG 217
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF T + +++H+L N + HG+ QER + L FK G+ P
Sbjct: 218 VQGKQALTLVFVETKKGADSLEHWLCINGFPATSIHGDRSQQEREQALRSFKT--GNTPI 275
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + +A
Sbjct: 276 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNEGNASMAR 335
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 336 PLSELMQE 343
>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase [Acidiphilium cryptum JF-5]
gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
Length = 503
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 14/307 (4%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G + R PR+++L PTREL+ QV H + ++ GG + Q D L +D
Sbjct: 83 GSRARARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVD 142
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+++ TPGR++ E G ++ D++ LV+DEAD M D GF PDI + + L
Sbjct: 143 VLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMR------ 196
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+ SATM +++L D + T + +A+ + + L + +K EAL +
Sbjct: 197 --QTLFFSATMAPEIRRLADAFLSNPKQI-TVSRPATVATTITEGLSLVATHDKREALRR 253
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ +VFCN + L ++ S HG++P R L +FK G
Sbjct: 254 LIR--TEDVQNALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKA--G 309
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G +G+ +L D
Sbjct: 310 EIRLLVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADR 369
Query: 309 LLADRIE 315
D IE
Sbjct: 370 AAVDAIE 376
>gi|145488701|ref|XP_001430354.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397451|emb|CAK62956.1| unnamed protein product [Paramecium tetraurelia]
Length = 1133
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 169/320 (52%), Gaps = 14/320 (4%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L + +E +L + +PRA+V+ T+EL+EQV V++ + + ST+ G G + +
Sbjct: 745 LKQEEEEQNKILTEQNKPRAIVVVSTKELAEQVEDVSQEFTKAMKL-STIALGKGTFKRE 803
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
+ L +D+VV T R+ +H ++ +++ V+DE DT+ D D++K K
Sbjct: 804 QSYLQEGVDLVVTTLERLQRHRSAQSIYLSRVQHYVVDEIDTLLDASMQDDLKKLATYFK 863
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSG 179
++ + T AT + V+ ++ + + IA L H + + HDF+ +
Sbjct: 864 DKDA-------MTTYCGATYSTKVKNFIESQYKKDIALLIEKQSHMHLENLSHDFVHCT- 915
Query: 180 SENKLEALLQVLEPSLSK-GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
+ +K E + + + +K +++FCN + S ++ F +N I TV+ HG++P R
Sbjct: 916 TLDKSEPFIALYKECQTKFKGSIIIFCNEITSCHFLEFFCKKNGIKTVSLHGDLPKGMRS 975
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+N+ +F+++ C L+ TDL ARGLD VD VI FDFP ++ DYLHR GR R G KG
Sbjct: 976 QNVAEFRSQQ--CKVLITTDLGARGLDFPFVDAVINFDFPNSTSDYLHRAGRAGRAGKKG 1033
Query: 298 KVTSLVAKKDVLLADRIEEA 317
+ SL + + D + +A
Sbjct: 1034 FIYSLYHNSEQSVIDELRKA 1053
>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
carolinensis]
Length = 600
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYGRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE---ALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ + +E L++++E
Sbjct: 276 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 332
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 333 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 390
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 391 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 446
>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
Length = 444
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 151/300 (50%), Gaps = 11/300 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R RA+VL PTREL+ Q+ + AK + + + ++ GG QE +L D+VV TPG
Sbjct: 72 RNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRNWDIVVATPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+ N+ + +++DEAD M D GF PDI + L +G Q++L
Sbjct: 132 RLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLP--------KGRQSLLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT +Q+L +R K ++I +S KL L +VL+ S
Sbjct: 184 SATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKS 243
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +V++F T S+ + LN+ + HG+ R L++F+ GD LV
Sbjct: 244 ETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRR--GDLKVLVA 301
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+D + HVI +D P + DY+HR GRT R G G+ S D + IE
Sbjct: 302 TDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIE 361
>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
Length = 615
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 155/296 (52%), Gaps = 18/296 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDE D M D GF P IRK + + +P+ QT++ S
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K E L++++E
Sbjct: 280 ATWPKEVRQLAEDFLKDYIHINIGALE---LSANHNILQIVDVCHDVEKDEKLIRLMEEI 336
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 337 MSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 394
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++
Sbjct: 395 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
>gi|416864075|ref|ZP_11915427.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|334835095|gb|EGM13996.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|453044054|gb|EME91780.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
PA21_ST175]
Length = 449
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHGSVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L R QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRRR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSIRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|418299490|ref|ZP_12911323.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355534955|gb|EHH04251.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 501
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 157/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ + NK L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPTRIEVA---KPSSTAKTVTQRIVAAHNKDYEKRAVL 236
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 237 RDLVRAEEAEL---KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 293
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+ DG+ LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV
Sbjct: 294 R--DGNLSLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLV 351
Query: 304 AKKDVLLADRIEEAI 318
K D D IE+ I
Sbjct: 352 TKSDAKYLDAIEKLI 366
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 15/314 (4%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
+L + R PR ++L PTREL+EQ+FR R R+T++ GG + PQ +L
Sbjct: 63 LLTTPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALRQG 122
Query: 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN 127
+D++V PGR+L H+ GN+ + ++ LVLDEAD MFD GF PDI++ L L +
Sbjct: 123 VDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKR---- 178
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
QT+L SATM A+ L E +R L +++ H +S ++ K L
Sbjct: 179 ----QTLLFSATMPPAISGLAGETLTDPVTVRIGHL-APLSTVEHAIYPVSHNQ-KAPLL 232
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L +L + V+VF T + ++ + L + G + ++R ++ F+
Sbjct: 233 LHLL--GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRR- 289
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G LV TD+AARG+D+ V HV+ FD P + Y HR GRT R G+ + V +
Sbjct: 290 -GSFQILVATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGE 348
Query: 307 DVLLADRIEEAIRK 320
D+ + IE ++K
Sbjct: 349 DMGMVRAIESHMKK 362
>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084233|ref|YP_006000515.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559570|ref|ZP_12210477.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338177898|gb|EGO80936.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 446
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 159/302 (52%), Gaps = 19/302 (6%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+VL PTREL+ QV + + + R S ++ GG + Q D L +D+++ PG
Sbjct: 74 KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTV 134
R++ HIE ++ + LVLDEAD M D GF P I++ L +P +NR QT+
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNR---------QTL 184
Query: 135 LVSATMTKAVQKLVDE-ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT + +++L E C+ + S H +A + K E LL +L
Sbjct: 185 LFSATFAEPIKQLALEFMCRPREVMVAS--HNTVAETITHRVHPVDVSRKRELLLYLL-- 240
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF T + S + FL + I T HG +R+ LN FK G
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKA--GRVTV 298
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G +G+ SLV ++D L
Sbjct: 299 LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLR 358
Query: 313 RI 314
+I
Sbjct: 359 QI 360
>gi|410479720|ref|YP_006767357.1| DEAD/DEAH box helicase [Leptospirillum ferriphilum ML-04]
gi|406774972|gb|AFS54397.1| DEAD/DEAH box helicase domain protein [Leptospirillum ferriphilum
ML-04]
Length = 444
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 151/300 (50%), Gaps = 11/300 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R RA+VL PTREL+ Q+ + AK + + + ++ GG QE +L D+VV TPG
Sbjct: 72 RNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRNWDIVVATPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+ N+ + +++DEAD M D GF PDI + L +G Q++L
Sbjct: 132 RLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLP--------KGRQSLLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT +Q+L +R K ++I +S KL L +VL+ S
Sbjct: 184 SATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKS 243
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +V++F T S+ + LN+ + HG+ R L++F+ GD LV
Sbjct: 244 ETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRR--GDLKVLVA 301
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+D + HVI +D P + DY+HR GRT R G G+ S D + IE
Sbjct: 302 TDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIE 361
>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 412
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 153/306 (50%), Gaps = 14/306 (4%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RPR ++L PTREL+ QV + + R+ ++ GG Q D+L +D+++ TPG
Sbjct: 69 RPRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALKAGVDIIIATPG 128
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+E G + IKYLVLDEAD M D GF PD+R+ + ++ + T L
Sbjct: 129 RLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIV----DKCPRDR----HTSLF 180
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ ++ L+ + + + +H I + K + L ++LE
Sbjct: 181 SATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKH-VIYPVAEDQKSDLLRELLE--RV 237
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ V+VFC T + + + L N + H +ER + L F+N G LV
Sbjct: 238 NYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRN--GRFEVLVA 295
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ DV HVI +D P + DY+HR GRT R A G +L+ +D IE
Sbjct: 296 TDIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSIE 355
Query: 316 EAIRKN 321
I K
Sbjct: 356 RFIGKK 361
>gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
Length = 446
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 159/302 (52%), Gaps = 19/302 (6%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+VL PTREL+ QV + + + R S ++ GG + Q D L +D+++ PG
Sbjct: 74 KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTV 134
R++ HIE ++ + LVLDEAD M D GF P I++ L +P +NR QT+
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNR---------QTL 184
Query: 135 LVSATMTKAVQKLVDE-ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT + +++L E C+ + S H +A + K E LL +L
Sbjct: 185 LFSATFAEPIKQLALEFMCRPREVMVAS--HNTVAETITHRVHPVDVSRKRELLLYLL-- 240
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +VF T + S + FL + I T HG +R+ LN FK G
Sbjct: 241 AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKA--GRVTV 298
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + VI +D P+ + DY+HR GRT R G +G+ SLV ++D L
Sbjct: 299 LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLR 358
Query: 313 RI 314
+I
Sbjct: 359 QI 360
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 163/318 (51%), Gaps = 25/318 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + + + ++ GG + QE ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ D+K +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLS-----GSENK 183
QT+ SATM ++++ + + I R +T + I F K S GSE K
Sbjct: 180 QTLFFSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAV-FFKGSRKDREGSE-K 237
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
L Q+++ K +VFCN V L + + HG++ +R L
Sbjct: 238 RTVLRQLIDREGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEG 297
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F+ +G L+ +D+AARGLD+ V HV FD P ++ DY+HR GRT R G +GK ++
Sbjct: 298 FR--EGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTI 355
Query: 303 VAKKDVLLADRIEEAIRK 320
V +D + +E+ ++K
Sbjct: 356 VVPRDEKNFEDVEKLLQK 373
>gi|386391490|ref|ZP_10076271.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
gi|385732368|gb|EIG52566.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
Length = 493
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 15/303 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+EQ++R + R R+ ++ GG + PQ +L +D++V PGR+
Sbjct: 74 RALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQGVDIIVACPGRL 133
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ GN+ + ++ LVLDEAD MFD GF PDI++ L L + QT+L SA
Sbjct: 134 LDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSER--------QTLLFSA 185
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM A+ L E +R + +++ H +S ++ K LL +LE + +
Sbjct: 186 TMPPAISGLAHETLTDPITVRIGHM-APLSTVEHAIYPISHTQ-KAPLLLHLLEEAGKQ- 242
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
V+VF T + ++ + L + G + ++R ++ F+ G LV TD
Sbjct: 243 -SVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRR--GSFQVLVATD 299
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+ V HV+ FD P + Y HR GRT R +G+ + V +D+ + IE
Sbjct: 300 IAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESH 359
Query: 318 IRK 320
++K
Sbjct: 360 MKK 362
>gi|384083794|ref|ZP_09994969.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HIMB30]
Length = 412
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 158/303 (52%), Gaps = 13/303 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPG 76
PRA++L PTREL Q+ + A+++ + R + GG + Q D L +P D++V TPG
Sbjct: 98 PRALILAPTRELVVQIAKDAENLCKYTRLSVVSIVGGMDYQKQRDDLRQSPCDIMVATPG 157
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ + + I+ LVLDEAD M D GF PD+R+ + RA P + QT+L
Sbjct: 158 RLIDFLGQNEINLRKIEVLVLDEADRMLDMGFMPDVRRIV-----RAC-PRKELRQTLLF 211
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT T + +L + + H + + ++ +E K + L V+
Sbjct: 212 SATFTPQIVELSERWTFEPTRIEIEPEHVTTETVEQ-IVYITTAETKYQLLKNVIH--TR 268
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+KVMVF N + R + L +++I GEVP ++R++ L++FK +G LV
Sbjct: 269 DLHKVMVFANRRDLCRDLVDRLVKDEIDAALLSGEVPQRKRIQTLDRFK--EGKTRILVA 326
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+A RG+ +D V HVI + P + DY+HR GRT R G +G S + D L IE
Sbjct: 327 TDVAGRGIHIDGVGHVINYTLPEDPEDYVHRIGRTGRAGTEGTSISFACEDDSFLLPEIE 386
Query: 316 EAI 318
E I
Sbjct: 387 EFI 389
>gi|386057057|ref|YP_005973579.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|347303363|gb|AEO73477.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
Length = 449
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K+E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKVELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|417859722|ref|ZP_12504778.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338822786|gb|EGP56754.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 501
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 157/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ + NK L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPTRIEVA---KPSSTAKTVTQRIVAAHNKDYEKRAVL 236
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 237 RDLVRAEEAELKNA---IIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 293
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+ DG+ LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV
Sbjct: 294 R--DGNLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLV 351
Query: 304 AKKDVLLADRIEEAI 318
K D D IE+ I
Sbjct: 352 TKSDAKYLDAIEKLI 366
>gi|387789936|ref|YP_006255001.1| DNA/RNA helicase [Solitalea canadensis DSM 3403]
gi|379652769|gb|AFD05825.1| DNA/RNA helicase, superfamily II [Solitalea canadensis DSM 3403]
Length = 452
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 22/311 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA++L PTREL+ QV + ++ + R T + GG + Q +++ N +D+++ TPGR
Sbjct: 73 PRALILVPTRELALQVLEATQILAKYTDLRITAIFGGLGPKTQIETIKNGVDVLIATPGR 132
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
++ G++V + Y V+DEAD M D GF P I K L +P K Q +L
Sbjct: 133 FMEIYLKGDLVVKHLNYFVIDEADKMMDMGFIPQIHKILEVIPRKR----------QNLL 182
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM++ V+ L + + + + + + + K+ ++ +L+ +
Sbjct: 183 FSATMSQRVENLAGDFLKFPTKVEVTQQATPAETVTQVLYYVPNIKTKVNLMMHLLQ-NQ 241
Query: 196 SKGNKVMVFCNTLNSSRAVDHFL----NENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ +K++VFC T ++ ++ +L E Q+ + H R+ +N+FKN+ D
Sbjct: 242 EEVSKLIVFCKTKTTADSISKYLVRQYGEEQVRVI--HANKGQNSRINAINQFKND--DI 297
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ DV HVI FD PL DY+HR GRT R G + + +
Sbjct: 298 RILVATDVAARGLDVSDVSHVINFDVPLIYEDYVHRIGRTGRANKTGDAITFCTDAEKMH 357
Query: 311 ADRIEEAIRKN 321
++I++ IR+
Sbjct: 358 IEKIQKLIRQQ 368
>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
Length = 529
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 157/317 (49%), Gaps = 27/317 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR++VLCPTREL+ QV + S H + ++ GG + Q+ ++ +D+++ TP
Sbjct: 72 RMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGVDVLIATP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L H E G ++ D+K +V+DEAD M D GF PDI + L P QT
Sbjct: 132 GRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTR----------QT 181
Query: 134 VLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA---- 186
+ SATM ++++ + + I R +T + I + S EA
Sbjct: 182 LFFSATMAPEIERITNTFLSNPERIEVARQATTSENITQG---VVMFKASRKDREATEKR 238
Query: 187 --LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L +++ K ++FCN V L ++ HG++ +R + L+ F
Sbjct: 239 KLLRMLIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGF 298
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+N G+ L+ +D+AARGLD+ V HV FD P ++ DY+HR GRT R G GK +
Sbjct: 299 RN--GELRFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMIC 356
Query: 304 AKKDVLLADRIEEAIRK 320
+D + +E ++K
Sbjct: 357 VPRDEKNFEDVERLVQK 373
>gi|393759582|ref|ZP_10348395.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393162143|gb|EJC62204.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 414
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 18/303 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL++QV S RST+V GG + PQ+++L +++V+ TPGR+
Sbjct: 46 RALVLTPTRELADQVAESIALYSKSVPLRSTVVFGGVDIGPQKEALRRGVEIVIATPGRL 105
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L HI+ + + LVLDEAD M D GF PD+ + L+P KNR Q +L
Sbjct: 106 LDHIDQRTINLSQVSILVLDEADRMLDMGFLPDLDRIVSLLP-KNR---------QGLLF 155
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT +K ++KL + + + ++ +S +E+K A++ +++
Sbjct: 156 SATFSKEIRKLARTFLNDPVEIEVAARNATASTVTQVVYPMS-AEDKRRAVVHLVK--TK 212
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K + +VF NT + + +L I + HG ER++ L+ FK+ G LV
Sbjct: 213 KLTQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKVLDAFKS--GTVDVLVA 270
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ + VI D P N+ DY+HR GRT R GA G+ +L+A + L IE
Sbjct: 271 TDVAARGLDVAGMPCVINVDLPYNAEDYVHRIGRTGRAGASGEAIALMAPDEEHLLQEIE 330
Query: 316 EAI 318
+ I
Sbjct: 331 KLI 333
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 158/305 (51%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV K+ S H RS +V GG + PQ +L + +++V+ TPGR+
Sbjct: 114 RALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTAALRSGVEIVIATPGRL 173
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L HI+ + + LV+DEAD M D GF PD+++ L+P K R Q ++
Sbjct: 174 LDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP-KQR---------QNLMF 223
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + + K+ + + E L
Sbjct: 224 SATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYIIRERGL- 282
Query: 197 KGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF NT + +SR NE + HG+ ER+ L FKN G LV
Sbjct: 283 --KQVIVFSNTKIGASRLARQLENEG-VKASAIHGDKSQAERMAALEAFKN--GTIEVLV 337
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ ++ VI +D P N+ DY+HR GRT R GA G SL + KD L I
Sbjct: 338 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLLVDI 397
Query: 315 EEAIR 319
E+ I+
Sbjct: 398 EKMIK 402
>gi|104782944|ref|YP_609442.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
entomophila L48]
Length = 454
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 160/305 (52%), Gaps = 14/305 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++Q + + S +S +V+GG + Q L D+++GTPGR+
Sbjct: 86 RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTPGRL 145
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+ + GN+ +K L+LDEAD M D GF D+ + +NR QT+L SA
Sbjct: 146 LEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENRE--------QTLLFSA 197
Query: 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
T A++ ++ + + HL +++ + R I ++K E ++Q L + +
Sbjct: 198 TTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHK-EQIVQWLLANETY 256
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
K ++F NT + + L ++ HGE ++R +++FK DG LV T
Sbjct: 257 -QKAIIFTNTRALADRIYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFK--DGGSKVLVAT 313
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+D +D VI FD P + +Y+HR GRT R G +G SL+ D L IE
Sbjct: 314 DVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIER 373
Query: 317 AIRKN 321
+++
Sbjct: 374 YLKQQ 378
>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
Length = 546
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 159/306 (51%), Gaps = 15/306 (4%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G + + P+ +++ PTREL+ Q++ A+ +H +R + GG + Q L +
Sbjct: 163 GSQAETQSPQVLIISPTRELTLQIYNEARKFTHGTMYRPVVAYGGTAVGYQLKQLEGGCN 222
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++VGTPGR+L + G + I L+LDEAD M D GF P+IRK + + S P
Sbjct: 223 ILVGTPGRLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIV----SNYSMPETG 278
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS--GSENKLEAL 187
QT++ SAT + +Q++ +E L + + I++ G KL +
Sbjct: 279 KRQTLMFSATFPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEVDEFGKREKLSEI 338
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L S + ++ +VF T ++ + +L++ T + HG+ +ER E L F++
Sbjct: 339 L-----SATGVDRTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRS- 392
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK- 305
G P LV T +AARGLD+ DV HV+ +D P N +Y+HR GRT R+G +G T+ K
Sbjct: 393 -GLAPVLVATSVAARGLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLATAFFHKE 451
Query: 306 KDVLLA 311
KD LA
Sbjct: 452 KDAPLA 457
>gi|154342919|ref|XP_001567405.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 604
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 160/304 (52%), Gaps = 8/304 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q++ + ++ R +V GG R Q L ++V TPGR
Sbjct: 204 PSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTRGCGLLVATPGR 263
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G Y D+++LVLDEAD M D GF P IR +V + P G+ QT+L S
Sbjct: 264 LSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRA-IVQGPDSDMPPPGE-RQTLLYS 321
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q++ E L+ + + D ++ +K LL+VL+ +
Sbjct: 322 ATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQD-VRWVEDMDKRGCLLEVLKE--HQ 378
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G +V+VF + ++ +L +++I + HG+ +ER E L+ FK+ G C LV T
Sbjct: 379 GERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKS--GVCRVLVAT 436
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+A+RGLD+ +V V+ +D P N DY+HR GRT R G +G S +K+ + D +
Sbjct: 437 DVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNEKNRNVVDDLIP 496
Query: 317 AIRK 320
+R+
Sbjct: 497 LLRE 500
>gi|424902243|ref|ZP_18325759.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
gi|390932618|gb|EIP90018.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 482
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 158/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RS ++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FKN LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|390950810|ref|YP_006414569.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390427379|gb|AFL74444.1| DNA/RNA helicase, superfamily II [Thiocystis violascens DSM 198]
Length = 576
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 160/303 (52%), Gaps = 14/303 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA++L PTREL+ Q+ R ++ H R+ +V GG + Q D L +D+++GTPGR
Sbjct: 85 PRALILAPTRELAVQIHRDTLLLATHTGLRAGLVYGGTGYQQQRDDLAAGVDILIGTPGR 144
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +++ I+ +VLDEAD MFD GF DIR L R P + +L S
Sbjct: 145 LIDYLKQNVFDLKAIEAVVLDEADRMFDLGFIKDIRFLL----RRMPPPESR--LGMLFS 198
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPSLS 196
AT++ V +L E ++ T KI + R ++ +E K+ L+ ++
Sbjct: 199 ATLSYRVTELAYEHMNRPQLIKIET--DKITADRVRQCCYMTSNEEKIPLLIGLVR--GW 254
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K ++MVF NT + V +L N I+T G+VP +R++ L F +G+ P LV
Sbjct: 255 KDARIMVFVNTKREADRVWGYLQGNGINTAVLSGDVPQNKRLKLLRDFT--EGNLPVLVG 312
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + DV HV+ +D P + DY+HR GRTAR GA G V + IE
Sbjct: 313 TDVAARGLHIPDVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAIGFVCETYAFCLPDIE 372
Query: 316 EAI 318
I
Sbjct: 373 TFI 375
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QVF K S RS +V GG + PQ+++L +++V TPGR+
Sbjct: 95 RALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEILVATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 155 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 204
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + K+S S+ K A++ +++ S
Sbjct: 205 SATFSNEIRKLGRSYLNQPVEIEVAARNATATTITQIAYKMS-SDAKRAAVVHLVK---S 260
Query: 197 KG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G +V+VF NT + + L + + + HG+ +R++ L FK GD LV
Sbjct: 261 RGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKA--GDLEVLV 318
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L + I
Sbjct: 319 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFLLDI 378
Query: 315 EEAIRKN 321
E+ I++
Sbjct: 379 EKLIKRE 385
>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
Length = 449
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 HQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
Length = 781
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 13/309 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P+ ++L PTREL+ Q+ ++ S + RS +V GG Q + ++V
Sbjct: 258 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVA 317
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ IE + KY+VLDEAD M D GF P IRK + ++ P+G QT
Sbjct: 318 TPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII----EESNMPSGINRQT 373
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
++ SAT K +QKL + + + S + + I ++ E KL L +
Sbjct: 374 LMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVE-KLNYLKNIFN- 431
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + +++F T + ++ FL + HG+ ER L+ F+N G CP
Sbjct: 432 TTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRN--GQCPI 489
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD----V 308
LV T +AARGLD+ +V HVI +D P + +Y+HR GRT R+G G+ TS K+ +
Sbjct: 490 LVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAI 549
Query: 309 LLADRIEEA 317
L D ++EA
Sbjct: 550 DLVDLLKEA 558
>gi|440801541|gb|ELR22559.1| ATPdependent RNA helicase dbp2, putative [Acanthamoeba castellanii
str. Neff]
Length = 706
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 154/299 (51%), Gaps = 13/299 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ VA + ++ ++T V GG PQ L+ +++V+ TPGR
Sbjct: 275 PIVLILAPTRELAVQIQEVANTFGLTSKIKNTCVYGGVPKGPQIRDLSRGVEIVIATPGR 334
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 335 LIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIMEQI-----RPD---RQTLMWS 386
Query: 138 ATMTKAVQKLVDEE-CQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
AT K V+ L E Q + + ++ + + K L+++LE ++
Sbjct: 387 ATWPKEVKALASEFLSQDMIQINIGSMELAANHRVTQIVDIVQEYEKRPKLMKLLE-TIM 445
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G ++++F T + + L + HG+ QER L +F++ G P +V
Sbjct: 446 DGGRILIFTQTKKGADQLQRALRGEGWPALAIHGDKTQQERDATLAEFRS--GRSPIMVA 503
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ DV +VI +DF + DY+HR GRT R GA G S D LA R+
Sbjct: 504 TDVAARGLDVKDVRYVINYDFASTAEDYVHRIGRTGRAGATGTAYSFFTSGDFKLAKRL 562
>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 678
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 157/311 (50%), Gaps = 26/311 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL++Q+ VA R R++ + GG PQ L + +++V+ TPGR
Sbjct: 201 PIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDLESGVEIVIATPGR 260
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ Q ++ S
Sbjct: 261 LIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQI-----RPDR---QVLMWS 312
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L ++ L +L SA H+ +++ ENKL LL
Sbjct: 313 ATWPKEVRALAEDYLTDYIQLNIGSLQ---LSANHNILQIVDVCQEHEKENKLRQLLH-- 367
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E K NK ++F T + L ++ ++ HG+ QER L +F+N G
Sbjct: 368 EIGSEKENKTIIFVETKRKVDNITQILRKDGWPALSIHGDKNQQERDHVLTQFRN--GRA 425
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-- 308
LV TD+AARGLD+ DV VI+FD+P + DY+HR GRT R G + +V
Sbjct: 426 SILVATDVAARGLDVEDVKFVIIFDYPSSLEDYIHRIGRTGRSEQTGTAYAFFTPHNVKH 485
Query: 309 --LLADRIEEA 317
L + +EEA
Sbjct: 486 ANALINVLEEA 496
>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
Length = 627
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 166/326 (50%), Gaps = 27/326 (8%)
Query: 7 AMLGVLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61
A++ ++ +PR P A++L PTREL++Q+ VA A R+T + GG PQ
Sbjct: 183 AIVHIIHQPRLSNGDGPIALILAPTRELAQQIQEVANCFGESAAVRNTCIFGGAPKGPQA 242
Query: 62 DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121
L+ +++ + TPGR++ +E G YLVLDEAD M D GF P IRK + +
Sbjct: 243 HDLDRGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 300
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG-- 179
+P+ Q ++ SAT K V+ L ++ HL +L SA H+ ++
Sbjct: 301 ---RPD---RQVLMWSATWPKEVRALAEDFLTDYTHLNIGSL---TLSANHNITQIIDVC 351
Query: 180 ----SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
++KL LLQ E K NK ++F T + + + ++ HG+ Q
Sbjct: 352 QEFEKDSKLFRLLQ--EIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQ 409
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
ER L +F++ G P LV TD+AARGLD+ DV +VI FD+P +S DY+HR GRT R
Sbjct: 410 ERDHVLQEFRS--GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRR 467
Query: 295 AKGKVTSLVAKKDVLLADRIEEAIRK 320
G + ++ A + E +R+
Sbjct: 468 QTGTAYAFFTSHNMKHAGDLIEVLRE 493
>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|335036272|ref|ZP_08529599.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|333792163|gb|EGL63533.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 503
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 156/315 (49%), Gaps = 28/315 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK-------L 184
QT+ SATM +QKL D Q + + K ++A+ ++ + NK L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPTRIEVA---KPSSTAKTVTQRIVAAHNKDYEKRAVL 236
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L++ E L ++FCN + L+ + S HG++ + R L F
Sbjct: 237 RDLVRAEEAEL---KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNF 293
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+ DG LV +D+AARGLD+ DV HV FD P+++ DY+HR GRT R G GK +LV
Sbjct: 294 R--DGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLV 351
Query: 304 AKKDVLLADRIEEAI 318
K D D IE+ I
Sbjct: 352 TKSDAKYLDAIEKLI 366
>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
1251]
gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 457
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 165/298 (55%), Gaps = 24/298 (8%)
Query: 13 MKPRRPRAVVLCPTRELSEQV---FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+K R +A++LCPTRELS+QV RV SH+ + + + GG PQ SL +
Sbjct: 69 VKKFRVQALILCPTRELSDQVARELRVLARFSHNIKILT--LCGGVAFGPQLGSLRHGAH 126
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
++VGTPGRIL+H++ + D+ LVLDEAD M D GF +I + L VP KNR
Sbjct: 127 IIVGTPGRILKHLKKDTLSLEDVDTLVLDEADRMLDMGFSEEINEVLEFVP-KNR----- 180
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
QT+L SAT T + + G H++T++ +IA+ + + +K++ +
Sbjct: 181 ----QTLLFSATYTDEILDISKSIQNGAIHVKTTS--TEIANKIEERFYEVNNADKIKTV 234
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+ +L S + V++F NT + L E+++ + HG++ +R + L +F N+
Sbjct: 235 IDIL--SNFRPQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANK 292
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
CP LV TD+AARGLD+ ++ VI +D P + Y HR GRTAR GA+G +L +
Sbjct: 293 --SCPVLVATDVAARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLAFTLYS 348
>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
Length = 712
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 147/292 (50%), Gaps = 16/292 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ P A+++ PTREL Q++ A+ + R +V GG + Q L +VVGT
Sbjct: 347 PQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEKGAHVVVGT 406
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L I G + +KYL+LDEAD M D GF P+IRK + P QT+
Sbjct: 407 PGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTF----DMPEKGQRQTL 462
Query: 135 LVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
+ SAT +Q+L E E + R + I H K K E L+++L
Sbjct: 463 MFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKY----EKREKLVEIL 518
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++ +VF T S+ + +L++ Q + HG+ +ER E L FK G
Sbjct: 519 NQAGT--DRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKT--GRA 574
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P L+ T +AARGLD+ V HVI +D P +Y+HR GRT R G GK TS
Sbjct: 575 PILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSF 626
>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 466
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K+ + H RS +V GG ++ Q L ++++V TPGR+
Sbjct: 88 RALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQTPHLKTGVEVLVATPGRL 147
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L HIE + ++ LVLDEAD M D GF PD+++ L L K R Q ++ S
Sbjct: 148 LDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLPKQR---------QNLMFS 198
Query: 138 ATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL DE + Q I R++ + + ++ +K L+Q+L+
Sbjct: 199 ATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQKVYEV----AQSDKETLLIQLLK-- 252
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ ++V++F T ++ + L I+ HG+ QER++ L+ FK G L
Sbjct: 253 AANASQVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKA--GTITAL 310
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI ++ P DY+HR GRT R GA G S V+ ++
Sbjct: 311 VATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPEEDKYIVE 370
Query: 314 IEEAIRKN 321
IE+ I++
Sbjct: 371 IEKLIKRQ 378
>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 152/302 (50%), Gaps = 16/302 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ Q+ ++ S ++ GG RPQ ++L +D++V TPGR+
Sbjct: 77 RALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEALRRGVDVLVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF-LVPLKNRASKPNGQGFQTVLVS 137
H++ G ++ LVLDEAD M DRGF P +++ V KNR QT+ S
Sbjct: 137 QDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSKNR---------QTLFFS 187
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
ATM + K+ E + A + + + I + S+ ++ + +P +
Sbjct: 188 ATMPAEIAKIAAEMLKDPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEMLRQPGI-- 245
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF T + + V LN + I+ HG+ +R L +F+ G P LV T
Sbjct: 246 -GRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRT--GRAPILVAT 302
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+A+RG+D+D V HV FD P Y+HR GRTAR GA G+ + A +V +E+
Sbjct: 303 DIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAKLKAVEK 362
Query: 317 AI 318
I
Sbjct: 363 LI 364
>gi|357407275|ref|YP_004919199.1| ATP-dependent RNA helicase rhlB [Methylomicrobium alcaliphilum 20Z]
gi|351719940|emb|CCE25616.1| ATP-dependent RNA helicase rhlB [Methylomicrobium alcaliphilum 20Z]
Length = 438
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + PRAV+L PTREL+ Q+ + A + + + ++ GG + Q D++ + +D+++G
Sbjct: 78 KIKNPRAVILAPTRELAIQIHKDALQLGKYLNLKLALIYGGTDYKKQMDTIKSNVDIIIG 137
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGRI+ G +++ +VLDEAD MFD GF DIR L + P
Sbjct: 138 TPGRIIDFYRQGAFTLDNVQVMVLDEADRMFDLGFIKDIRFLLRRM------PPADKRLN 191
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ V +L E ++ T + + A +E K+ LL VL+
Sbjct: 192 MLFSATLSYKVTELAYEHMNQPVLIKIET-EEVTSKAIQQSAFCPSNEQKIPLLLGVLKK 250
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + ++F NT + ++ +LN N T G+VP ++R L F ++
Sbjct: 251 YAPQ--RSIIFVNTKRCAERLNDYLNANGFVTAVLSGDVPQEKRQRLLTDF--QENKIRL 306
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
++ TD+AARGL + DV HVI +D P DY+HR GRTAR GA G+ S + ++
Sbjct: 307 MIATDVAARGLHIADVSHVINYDLPQEVEDYVHRIGRTARFGASGEAISFICEEYAYSMP 366
Query: 313 RIEEAI 318
IE I
Sbjct: 367 DIETYI 372
>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
Length = 629
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 155/302 (51%), Gaps = 23/302 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++ PTRELS Q++ ++ ++H R+ + GG ++ Q L D++V TPGR
Sbjct: 237 PSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGGAAIQYQLKQLERGCDILVATPGR 296
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ I+ G++ +++YLVLDEAD M D GF P IR + + P T++ S
Sbjct: 297 LVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIV----EKTGMPAPGQRITLMFS 352
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENK---LEALLQVL 191
AT K +Q L + +L R + H+ I F+ E + LEA+ V
Sbjct: 353 ATFPKNIQTLARDFLHNNLNLTVGRVGSTHENIL---QKFVYCKDDEKRDLMLEAIASVE 409
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+L VF T + +++FL +N + + HG+ +ER L F+ G
Sbjct: 410 TLTL-------VFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERETALENFRR--GIT 460
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P LV TD+A+RGLD+ DV HVI +D P N DY+HR GRT R G G TS K+ +
Sbjct: 461 PILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGISTSFFTDKNNQI 520
Query: 311 AD 312
AD
Sbjct: 521 AD 522
>gi|293335017|ref|NP_001168055.1| uncharacterized protein LOC100381785 [Zea mays]
gi|223945729|gb|ACN26948.1| unknown [Zea mays]
Length = 388
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 155/312 (49%), Gaps = 10/312 (3%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
M+ P A++L PTRELS Q+ A+ S+ R + GG + Q L +D++V
Sbjct: 3 MRTAYPSALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRELERGVDILV 62
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR++ +E + I+YL LDEAD M D GF P +R+ + + P Q
Sbjct: 63 ATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV----EQMDMPLPGARQ 118
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQV 190
T+L SAT K +QK+ + L + + + R +F++ + + L LL
Sbjct: 119 TMLFSATFPKEIQKMASDFLDNYIFLAVGRVGSSTDLIAQRVEFVQEADKRSHLMDLLHA 178
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ K +VF T + +++ +L N + HG+ QER L FK+ G
Sbjct: 179 -QRDTGKQTLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKS--GQ 235
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
P LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ +
Sbjct: 236 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSS 295
Query: 310 LADRIEEAIRKN 321
LA + + ++++
Sbjct: 296 LARSLADLMQES 307
>gi|413920524|gb|AFW60456.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 608
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 157/315 (49%), Gaps = 10/315 (3%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G+ M+ P A++L PTRELS Q+ A+ S+ R + GG + Q L +D
Sbjct: 220 GMGMRTAYPSALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRELERGVD 279
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR++ +E + I+YL LDEAD M D GF P +R+ + + P
Sbjct: 280 ILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV----EQMDMPLPG 335
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEAL 187
QT+L SAT K +QK+ + L + + + R +F++ + + L L
Sbjct: 336 ARQTMLFSATFPKEIQKMASDFLDNYIFLAVGRVGSSTDLIAQRVEFVQEADKRSHLMDL 395
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L + K +VF T + +++ +L N + HG+ QER L FK+
Sbjct: 396 LHA-QRDTGKQTLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKS- 453
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
G P LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+
Sbjct: 454 -GQTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDN 512
Query: 307 DVLLADRIEEAIRKN 321
+ LA + + ++++
Sbjct: 513 NSSLARSLADLMQES 527
>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
Length = 411
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 21/313 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP R ++L PTREL+ QV A++++ H ++GG + + D L D+VV
Sbjct: 72 KPGPARVLILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQEHADILATTQDIVVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++++IE I++L+LDEAD M D GFGP + + + R QT
Sbjct: 132 TPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRK--------QT 183
Query: 134 VLVSATMT-KAVQKLVDEECQGIAHLRTSTL---HKKIASARHDFIKLSGSENKLEALLQ 189
+L SAT+ K V+ + + A + KKIA H + +KLE L +
Sbjct: 184 LLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYH---RADDMTHKLELLKK 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L + + +VF T + L + QI GE+P R + +F+ DG
Sbjct: 241 IL---TEQAERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFR--DG 295
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+AARG+DL DV HVI +D P ++ YLHR GRTAR G KG SLV D
Sbjct: 296 TVNVLLATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQ 355
Query: 309 LLADRIEEAIRKN 321
+ DR+ ++++
Sbjct: 356 PMIDRVARYVKED 368
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 16/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 93 RALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEALRQGCEVLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E N+ + LVLDEAD M D GF PD+ + + R P QG L SA
Sbjct: 153 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERII-----RLLPPQRQGL---LFSA 204
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++KL + + + + +++G E K A++ +++ S+G
Sbjct: 205 TFSNEIRKLGRSYLNQPVEIEVAARNATADTVTQIAYQMTG-EAKRAAVVHLVK---SRG 260
Query: 199 -NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V+VF NT + + L + + + HG+ +R++ L FK G+ LV T
Sbjct: 261 LKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKA--GELEVLVAT 318
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L ++ IE+
Sbjct: 319 DVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERYLLDIEK 378
Query: 317 AIRKN 321
I++
Sbjct: 379 LIKRQ 383
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 154/307 (50%), Gaps = 15/307 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R P+++VL PTREL+ QV IS + R + GG + Q +L N +++G
Sbjct: 69 KDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNGAQVIIG 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ HI+ G + I LVLDEAD M D GF DI + +KN + QT
Sbjct: 129 TPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKN-------ENIQT 181
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SATM + L + + + S + + + +++KLEAL ++LE
Sbjct: 182 LLFSATMPDPIMALTKKYMKNPKVVSISKEQLTVPLTDQFYCE---AKDKLEALCRILET 238
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+K ++FC T + LN S HG++ +R + + F+ + +
Sbjct: 239 --EDMDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFR--ERNLEV 294
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ DV HVI FD P + Y+HR GRT R G G + + ++
Sbjct: 295 LVATDVAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLR 354
Query: 313 RIEEAIR 319
IE+ IR
Sbjct: 355 LIEKVIR 361
>gi|297739789|emb|CBI29971.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 154/309 (49%), Gaps = 15/309 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ + + GG + Q L +D++V TPGR
Sbjct: 17 PLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGR 76
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 77 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPPGVRQTMLFS 132
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R +F+ S + L LL +
Sbjct: 133 ATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANG 192
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G + +VF T + +++H+L N HG+ QER L FK+ G+ P
Sbjct: 193 AHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFKS--GNTPI 250
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL--- 309
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + +
Sbjct: 251 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLAR 310
Query: 310 -LADRIEEA 317
LAD ++EA
Sbjct: 311 PLADLMQEA 319
>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 441
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 156/310 (50%), Gaps = 18/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP RPRA++L PTREL+ QV ++ H +S + GG + PQ +L P+D+VV
Sbjct: 76 KPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKALRGPMDIVVA 135
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H + ++ LVLDEAD M D GF DIR+ L+P K R
Sbjct: 136 TPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMP-KQR--------- 185
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
Q ++ SAT + ++ L A + + A + L S K E L ++
Sbjct: 186 QNLMFSATFSGEIRTLASSLLNKPAEVDVAP-RNTAAETVQQTVHLVESSRKRELLSHLI 244
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ +V+VF T + + + L ++ + + HG R + L +FK G
Sbjct: 245 RS--NDWGQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKT--GAV 300
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
P LV TD+AARGLD+D + V+ F+ P DY+HR GRT R G+ G SLV +++ L
Sbjct: 301 PVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKL 360
Query: 311 ADRIEEAIRK 320
IE I++
Sbjct: 361 LKGIERLIQR 370
>gi|452751054|ref|ZP_21950800.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
gi|451961204|gb|EMD83614.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
Length = 481
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++++ PTREL++QV + + +++ ++ GG Q+ +L +D+++
Sbjct: 81 RARMPRSLIIAPTRELADQVAQNFEKYGKNSKLSMALLIGGVSFGDQDKALAKGVDVLIA 140
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L E G ++ + LV+DEAD M D GF PD+ + L G+ QT
Sbjct: 141 TPGRLLDQFERGKILLSGVDILVIDEADRMLDMGFIPDVERICGLL--------GRNRQT 192
Query: 134 VLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
+L SATM ++KL D+ + I R S+ +K I + ++ G K AL ++
Sbjct: 193 LLFSATMPPPIKKLADKFMSSPKQIEVERQSSTNKNIEQS----VQHVGPRGKRGALRKI 248
Query: 191 LEPSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L S+G + +VFCN + + L + HG++ ++R+ + FK +
Sbjct: 249 LG---SEGMRSAIVFCNRKRDVKTLTDVLKDAGFRAGQIHGDMDQKDRMATMADFKAD-- 303
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV +D+AARGLD+ V HV+ +D PL++ DY+HR GRT R GA G +LV D
Sbjct: 304 AINVLVASDVAARGLDVKGVSHVVNYDVPLHAEDYVHRIGRTGRAGATGVAVTLVTDSDT 363
Query: 309 LLADRIEEAI 318
L + IE I
Sbjct: 364 ELLENIESLI 373
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 159/310 (51%), Gaps = 24/310 (7%)
Query: 15 PR-RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
PR R RA+V+ PTREL+EQ+ + + H RS V GG +RPQ L +D+VV
Sbjct: 67 PRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKRGVDIVVA 126
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
PGR++ HI + +I+ LVLDEAD MFD GF P +R+ L VP +
Sbjct: 127 CPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQR---------- 176
Query: 132 QTVLVSATMTKAVQKLVDEECQG--IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
QT+L SATM A+++L E + +T + ++ A + + K LL+
Sbjct: 177 QTLLFSATMPAAIRRLSGEVLTSPMTVQVGNTTPAETVSHALYPVAQ----HQKTAMLLE 232
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L S+ V+VF T + ++ + L + + G + R E L F+ DG
Sbjct: 233 LLSAVDSR--SVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFR--DG 288
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+ V HVI +D P + Y+HR GRT R KG+ +LV +D
Sbjct: 289 KYEILVATDIAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDN 348
Query: 309 LLADRIEEAI 318
+ IE+ +
Sbjct: 349 AMVRAIEKVL 358
>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
lyrata]
gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 157/307 (51%), Gaps = 13/307 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P AV+L PTREL+ Q+ AK S+ + + GG + Q L +D++V TPGR
Sbjct: 228 PLAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 287
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + IK+L LDEAD M D GF P IRK + + P G+ QT+L S
Sbjct: 288 LNDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVEQMD---MPPRGER-QTMLFS 343
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT + +Q+L + L + + + R +F++ S + L LL +
Sbjct: 344 ATFPREIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKRSHLMDLLHAQRETQ 403
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + +VF T + ++++L N+ + HG+ QER L FK+ G P LV
Sbjct: 404 DKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKS--GRTPILV 461
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV----LL 310
TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + LL
Sbjct: 462 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQMARLL 521
Query: 311 ADRIEEA 317
A+ ++EA
Sbjct: 522 AELMQEA 528
>gi|357125045|ref|XP_003564206.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like
[Brachypodium distachyon]
Length = 637
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 156/310 (50%), Gaps = 19/310 (6%)
Query: 15 PRRPR--------AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
P+RPR A++L PTRELS Q+ AK ++ R+ + GG + Q L
Sbjct: 244 PQRPRGSRTAYPLALILSPTRELSVQIHEEAKKFAYQTGVRAVVAYGGAPIHQQLRELER 303
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
++++V TPGR++ +E + + YL LDEAD M D GF P IRK + + P
Sbjct: 304 GVEILVATPGRLMDLLERARVSLQMVNYLALDEADRMLDMGFEPQIRKIV----EQMDMP 359
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKL 184
QT+L SAT K +Q+L + L + + + R +F+ + + L
Sbjct: 360 PRGVRQTMLFSATFPKEIQRLASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYL 419
Query: 185 EALLQVLEPSLSKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
L+ + + G + +VF T + A++++L N + HG+ QER L
Sbjct: 420 MDLIHAQKANTVPGKQSLTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALR 479
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FK+ G P LV TD+AARGLD+ DV HVI FD P + DY+HR GRT R G G T+
Sbjct: 480 SFKS--GATPILVATDVAARGLDIPDVAHVINFDLPNDIDDYVHRIGRTGRAGKSGVATA 537
Query: 302 LVAKKDVLLA 311
+ ++ LA
Sbjct: 538 FFNEGNMSLA 547
>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 713
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 13/292 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ R ++ ++ + + GG Q L +D+V+ TPGR
Sbjct: 175 PIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQGVDVVIATPGR 234
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLVLDEAD M D GF IRK L + +P+ QT++ S
Sbjct: 235 LIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQI-----RPDR---QTLMFS 286
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPSLS 196
AT K VQ L + C+ H+ + R + ++ K+ L++ L+ L+
Sbjct: 287 ATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLD-CLT 345
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +KV++F T ++ LN+ + HG+ ++R +NKFK+ G+C L+
Sbjct: 346 QKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKS--GECRILIA 403
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
TD+A+RGLD+ DV HV +DFP DY+HR GRT R GA G S + +D
Sbjct: 404 TDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFED 455
>gi|429859673|gb|ELA34444.1| RNA helicase [Colletotrichum gloeosporioides Nara gc5]
Length = 522
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 153/287 (53%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 176 PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 235
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 236 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTLMWS 287
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + + ++ +++ K + +++ LE + +
Sbjct: 288 ATWPKEVRALASDFLTDFIQVNIGSMELAANHRITQIVEVVSESEKRDRMIKHLEKVMDN 347
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER L++FK G P +V
Sbjct: 348 KENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVA 405
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GAKG +L
Sbjct: 406 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITL 452
>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
Length = 627
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 155/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q ++ ++V GTP
Sbjct: 269 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGTP 328
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 329 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 384
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + FI+++ +K E LL +L+ +
Sbjct: 385 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLLDLLKTT 443
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 444 GTE--RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVL 499
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 500 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 548
>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|418587191|ref|ZP_13151225.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592075|ref|ZP_13155953.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421152185|ref|ZP_15611773.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|421518498|ref|ZP_15965172.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|375042196|gb|EHS34856.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049103|gb|EHS41612.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404347980|gb|EJZ74329.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404525815|gb|EKA36064.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 449
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
Length = 496
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 158/306 (51%), Gaps = 15/306 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR ++L PTREL+EQ+FR R R+T++ GG + PQ +L +D++V P
Sbjct: 71 RSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALRQGVDVIVACP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H+ GN+ + ++ LVLDEAD MFD GF PDI++ L L + QT+L
Sbjct: 131 GRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKR--------QTLL 182
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM A+ L E +R L +++ H +S ++ K LL +L
Sbjct: 183 FSATMPPAISGLAAETLTDPVTVRIGHL-APLSTVEHAIYPVSHNQ-KAPLLLHLL--GE 238
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ V+VF T + ++ + L + G + ++R ++ F+ G LV
Sbjct: 239 AGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRR--GSFQILV 296
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+ V HV+ FD P + Y HR GRT R G+ + V +D+ + I
Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAI 356
Query: 315 EEAIRK 320
E ++K
Sbjct: 357 ESHMKK 362
>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 448
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 165/315 (52%), Gaps = 31/315 (9%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+RP RA+VL PTREL+ QV ++ + S ++ GG + PQ L + +D++V T
Sbjct: 76 QRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQIKMLKHGVDILVAT 135
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQT 133
PGR+L H++ G + I+ LVLDEAD M D GF DIR+ L L KNR Q
Sbjct: 136 PGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAALPKNR---------QN 186
Query: 134 VLVSATMTKAVQKLVDEECQGIAHL----RTST---LHKKIASARHDFIKLSGSENKLEA 186
+L SAT + ++ L D A + R ST + +KI D K
Sbjct: 187 LLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRD---------KKHP 237
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
+L L S + ++V+VF T + + + L ++ IS + HG R L++FK
Sbjct: 238 MLAHLIKS-NNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFK- 295
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
DG LV TD+AARG+D+D + HV+ +D P DY+HR GRT R GA G+ SLV
Sbjct: 296 -DGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCV 354
Query: 306 KDVLLADRIEEAIRK 320
++ + IE+ I++
Sbjct: 355 DELEMLKDIEKLIKR 369
>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
2210633]
gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
Peru-466]
gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
gi|417321185|ref|ZP_12107725.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
gi|433656616|ref|YP_007273995.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus BB22OP]
gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
2210633]
gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
Peru-466]
gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
gi|432507304|gb|AGB08821.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus BB22OP]
Length = 459
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 171/316 (54%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +A+VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M + GF + L + N A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGF----QDALDAIINAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++K+ + ++ + H + A++ F K+ G+E +
Sbjct: 176 PKQR----QTLLFSATFPEKIEKIAQRIMKSPEMIKVESTHDTSSIAQY-FYKVEGTEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT + V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTYQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|380488521|emb|CCF37316.1| ATP-dependent RNA helicase DBP3, partial [Colletotrichum
higginsianum]
Length = 521
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 154/312 (49%), Gaps = 29/312 (9%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+K R +AVV+ PTREL+ Q + +S +S + GG Q L D++V
Sbjct: 166 IKKRCIKAVVVSPTRELAMQTQEQMEHVSSLLGLKSICIYGGASKDEQRGLLRRGADVIV 225
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+ + DG + GD+++ VLDEAD M D+GF DI+ L + R + Q
Sbjct: 226 ATPGRLKDFMMDGTISLGDVRFAVLDEADRMLDKGFEEDIKMILGDMPPREER------Q 279
Query: 133 TVLVSATMTKAVQKLVD----------------EECQGIAHLRTSTLHKKIASARHDFIK 176
TV+ +AT +V+KL + E G L+ +T + R + +
Sbjct: 280 TVMFTATWPASVRKLAESFMVDPIKITIGSSGKETANGAVELQANTR----ITQRVEVVD 335
Query: 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
E +L LL+ + K ++++VFC + V+ FL + I HG++ ++
Sbjct: 336 PRAKEQRLLQLLKQWQTGAQKDDRILVFCLYKKEATRVETFLQQRGIRVGGIHGDLRQEQ 395
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
R +L FK G P LV TD+AARGLD+ +V VI FPL DY+HR GRT R G
Sbjct: 396 RTRSLEAFKA--GTTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGK 453
Query: 296 KGKVTSLVAKKD 307
G+ +L + D
Sbjct: 454 TGEAITLFTEHD 465
>gi|346992915|ref|ZP_08860987.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. TW15]
Length = 455
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 21/317 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 75 RARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDRGVDVLIA 134
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 135 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 184
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA----- 186
QT+ SATM ++++ D + + + + G EA
Sbjct: 185 QTLFFSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRK 244
Query: 187 -LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ K ++FCN L + + HG++ +R++ L+ F+
Sbjct: 245 TLRALIDSEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAAIHGDLDQSQRMKTLDGFR 304
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G +GK ++ +
Sbjct: 305 --DGSLRLLVASDVAARGLDIPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICS 362
Query: 305 KKDVLLADRIEEAIRKN 321
+D IE I+K+
Sbjct: 363 GRDEKALAAIESLIQKD 379
>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
Length = 449
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K+E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKVELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ +V TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLMVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|384254251|gb|EIE27725.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 491
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 156/307 (50%), Gaps = 14/307 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A+++ PTREL+ Q++ ++ ++ R +V GG + Q L +D++V TPGR
Sbjct: 132 PKALIMGPTRELTNQIYEESRKFTYQTGLRPVVVYGGAPVLDQIRQLERGVDILVATPGR 191
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G + KYLVLDEAD M D GF P IR + + P QT++ S
Sbjct: 192 LSSFIERGRVSLSRTKYLVLDEADRMLDMGFEPQIRSIV----DATDMPKPGSRQTLMFS 247
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS-GSENKLEALLQVLEPSLS 196
AT K +Q+L + L + F ++ G + KL L P L+
Sbjct: 248 ATFPKEIQELAADFMSNYLFLAVGRVGSSTNLIIQHFEEVEPGDKQKLLVSLVRAVPGLT 307
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+VF T + ++HFL +N+ HG++ +ER +L +F+ G P LV
Sbjct: 308 -----LVFVETKVWADRLEHFLVQNKFPATTIHGDLSQEEREYSLEQFRC--GAKPILVA 360
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLADRI 314
TD+A+RGLD+ V HVI +D P + Y+HR GRT R G KG T+ + KD LA +
Sbjct: 361 TDVASRGLDIPHVTHVINYDLPRDIESYVHRIGRTGRAGKKGITTAFFSPGKDSNLAQAL 420
Query: 315 EEAIRKN 321
+ +++
Sbjct: 421 VDLLKET 427
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
ortholog [Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 31/316 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A++L PTREL+ Q+ +S +AR R + GG + Q ++ +D++V TPGRI
Sbjct: 76 QAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKRGVDVIVATPGRI 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ HI+ + +K+LVLDEAD M D GF DI +KN + QT+L SA
Sbjct: 136 MDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGI---IKNISGDR-----QTMLFSA 187
Query: 139 TMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
TM ++KL + +E + IA ++ S ++I F +++K EAL ++++
Sbjct: 188 TMPAPIKKLASNYMKKEVKHIAIIKNSLTVERI----QQFYFEVKNKDKFEALCRIID-- 241
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKNEDGDC 251
+ + ++FC T R VD + Q N HG++ +R+ L KFK + D
Sbjct: 242 VEEPETTIIFCRT---KRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDF 298
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+ +V HVI +D P + Y+HR GRT R A+G SLV ++ ++
Sbjct: 299 --LVATDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVM 356
Query: 311 ADRIEE----AIRKNE 322
+IE+ IR+ E
Sbjct: 357 IKQIEKFTKSKIRRKE 372
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 22/307 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVLIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 ALK--QVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRK 320
IE+ I++
Sbjct: 372 IEKLIKR 378
>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|355639459|ref|ZP_09051174.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|392982323|ref|YP_006480910.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|419756955|ref|ZP_14283300.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421172786|ref|ZP_15630547.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831879|gb|EHF15883.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|384396710|gb|EIE43128.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317828|gb|AFM63208.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404537189|gb|EKA46803.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 449
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|384918672|ref|ZP_10018741.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
gi|384467385|gb|EIE51861.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
Length = 487
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 164/318 (51%), Gaps = 23/318 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + + + ++ GG + QE ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQETLIDKGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ D+K +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLS----GSENKL 184
QT+ SATM ++++ + + I R ++ + I F K S + K
Sbjct: 180 QTLFFSATMAPEIERITNTFLSNPERIEVARQASASETITQGAV-FFKASRRDREATEKR 238
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+ L ++++ +VFCN V L ++ + HG++ +R L+ F
Sbjct: 239 DILRKLIDMEGDACTNAIVFCNRKVDVDVVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGF 298
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
+ DG L+ +D+AARGLD+ V HV FD P + DY+HR GRT R G +GK ++V
Sbjct: 299 R--DGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAFTIV 356
Query: 304 AKKDVLLADRIEEAIRKN 321
+ +D D +E+ ++K+
Sbjct: 357 SGRDEKNFDAVEKLLQKD 374
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 174/338 (51%), Gaps = 35/338 (10%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQ 60
LR +EAM PR PR ++L PT ELS QV + +SIS A FRS + +GG R + Q
Sbjct: 312 LRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQ 371
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFLV-- 117
+SL +D+++ TPGR L +++G + +++ +V DE D +F + GF + + +
Sbjct: 372 LESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGFEQVLHQLITVA 431
Query: 118 PLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177
P+ Q + V+AT+ + V E + ++H+ A +
Sbjct: 432 PVTT----------QYLFVTATLPLDIYNKVVETFPDCEVIMGPSIHRTSARLEEILVDC 481
Query: 178 SGSE-----------NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-----N 221
SG + NK AL++++E S + K +VFCN + + R V++ L +
Sbjct: 482 SGDDNDEKNPETAFSNKKLALVKIIEESPVR--KTIVFCNKIETCRKVENVLTRLDRKAS 539
Query: 222 QISTVNYHGEVPAQERVENLNKFKN-EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLN 279
QI + +H + ++R+ N+ F N + D LVCTD A+RG+D +V+HV++FD+P +
Sbjct: 540 QIKVLPFHAALDQEKRIANMKAFLNKQSSDSMFLVCTDRASRGIDFTNVNHVVLFDYPRD 599
Query: 280 SIDYLHRTGRTAR-MGAKGKVTSLVAKKDVLLADRIEE 316
+Y+ R GRTAR GK K V LA R+ E
Sbjct: 600 PSEYVRRVGRTARGASGDGKAFVFAVGKQVSLARRVME 637
>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 515
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 164/318 (51%), Gaps = 28/318 (8%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
V +KP +PR ++L PTREL+ QV ++ H + S ++ GG + PQ + L P+D+
Sbjct: 79 VKVKPGQPRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIERLKKPLDI 138
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+V TPGR+L H + I+ LVLDEAD M D GF DI++ L L +
Sbjct: 139 LVATPGRLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKR------- 191
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAH-------LRTSTLHKKIASARHDFIKLSGSENK 183
Q +L SAT + +++L D G+ H R +T + + A H L +K
Sbjct: 192 -QNLLFSATFSDEIKELAD----GLLHNPGFVEVARRNTASELVEQAVH----LVSQGHK 242
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
+ + ++ K +V++F T + + + L+++ I+ HG R + L +
Sbjct: 243 RDLVAHLIRHHDWK--QVLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAE 300
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
FKN G P LV TD+AARGLD+D + V+ F+ P DY+HR GRT R G G SL
Sbjct: 301 FKN--GTLPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSL 358
Query: 303 VAKKDVLLADRIEEAIRK 320
V +++ L IE I++
Sbjct: 359 VDGEEIKLLKGIERLIKR 376
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 15/313 (4%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P+R A+VL PTREL+ Q+ +++ +S ++ GG Q +L
Sbjct: 78 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 137
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128
+++ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L K N
Sbjct: 138 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL--------KVNP 189
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
+ +T L SATMTK VQKL + S+ ++ + + +I + S+ K L+
Sbjct: 190 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIP-SKFKDTYLV 248
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+L GN M+FC+T N+++ L + + HG++ +R+ +LNKFK +
Sbjct: 249 YILNEL--AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKA 306
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V + D
Sbjct: 307 RSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD 364
Query: 308 VLLADRIEEAIRK 320
V L RIE I K
Sbjct: 365 VELFQRIEHLIGK 377
>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|386068049|ref|YP_005983353.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|348036608|dbj|BAK91968.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
Length = 449
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 22/307 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVLIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H++ G ++ LVLDEAD M D GF PD+++ L L K R QT+L S
Sbjct: 149 LDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFS 199
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL Q I R++ + +D +K A+++++
Sbjct: 200 ATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDV----AEGDKQAAVVKLIRDR 255
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + + + + I HG+ ER++ L+ FK G+ L
Sbjct: 256 ALK--QVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKR--GEIEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ ++ VI FD P ++ DY+HR GRT R GA G SL + +
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 314 IEEAIRK 320
IE+ I++
Sbjct: 372 IEKLIKR 378
>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase [Dinoroseobacter shibae DFL 12]
gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
12]
Length = 493
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 23/315 (7%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR++VL PTREL+ QV + H + ++ GG + Q+ ++ +D+++ TP
Sbjct: 72 RMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDKGVDVLIATP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L H E G ++ D+K +V+DEAD M D GF PDI K L P QT
Sbjct: 132 GRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTR----------QT 181
Query: 134 VLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFI-----KLSGSENKLE 185
+ SATM ++++ + A + R ST + I F + + + K E
Sbjct: 182 LFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKRE 241
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L ++E ++FCN V L ++ HG++ +R + L++F+
Sbjct: 242 MLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFR 301
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG LV +D+AARGLD+ +V HV FD P ++ DY+HR GRT R G KG L
Sbjct: 302 --DGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAV 359
Query: 305 KKDVLLADRIEEAIR 319
D L IE+ ++
Sbjct: 360 PADDKLLAAIEDLVK 374
>gi|407772394|ref|ZP_11119696.1| DEAD/DEAH box helicase [Thalassospira profundimaris WP0211]
gi|407284347|gb|EKF09863.1| DEAD/DEAH box helicase [Thalassospira profundimaris WP0211]
Length = 599
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 163/317 (51%), Gaps = 30/317 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP +PRAV+L PTREL+ Q+ + + R S++V GG + PQ L +D++V
Sbjct: 72 KPGQPRAVILAPTRELATQIGQCLRDFKKGIRLFSSVVFGGSPMGPQIQELRRGVDILVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L H+ + + D++ +LDEAD M D GF D+ L N QT
Sbjct: 132 TPGRLLDHMSRNTVRFDDVEVFILDEADRMLDMGFSEDVLTVAELLPN--------AHQT 183
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRT---STLHKKIASA-----RHDFIKLSGSENKLE 185
V+ SATM V+ L D + + T S++ +++ RHD KL
Sbjct: 184 VMFSATMPPEVKHLTDRLLKDPVKVETAPQSSVTERVTQVGMFVKRHDKTKL-------- 235
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L+Q+L+ S+ +V+VF T + + L + I + HG+ + R + L F+
Sbjct: 236 -LVQLLKRDESE--RVLVFTKTKADADELSFQLRDEGIDSDAIHGDKQQRIRQKILRNFR 292
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
N G P L+ TD+AARG+D+ + HV+ +D P ++ Y+HR GRT R A+G S
Sbjct: 293 N--GSFPVLIATDVAARGIDVPGITHVVNYDLPQDAESYVHRIGRTGRGSAEGIAISFCE 350
Query: 305 KKDVLLADRIEEAIRKN 321
+D+ L IE I+++
Sbjct: 351 PRDIRLLRNIERLIKQD 367
>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
Length = 644
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 154/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q + ++V GTP
Sbjct: 284 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREIERGCNVVCGTP 343
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 344 GRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 399
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + FI+++ +K E LL +L+ +
Sbjct: 400 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLLDLLKTT 458
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 459 GTE--RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVL 514
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 515 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 563
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 168/314 (53%), Gaps = 17/314 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R A+VL PTREL+ Q+ +++ +S ++ GG + Q +L +
Sbjct: 81 LLESPQRLYALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPHI 140
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL-VPLKNRASKPNG 128
V+ TPGR++ H+E+ IKYLV+DEAD + + F ++ K L V ++R
Sbjct: 141 VIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDR------ 194
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
+T L SATMTK V KL + S+ ++ + + ++ + S+ K L+
Sbjct: 195 ---KTFLFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIP-SKFKDSYLV 250
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+L GN M+FC+T N+++ V L + + HG++ +R+ LNKFK +
Sbjct: 251 YILNEL--AGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKS 308
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK + V++ D
Sbjct: 309 RSI--LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYD 366
Query: 308 VLLADRIEEAIRKN 321
V L RIE I K
Sbjct: 367 VELFQRIEHLIGKK 380
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 158/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L Q +L SA
Sbjct: 138 LDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPER--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|340379503|ref|XP_003388266.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like
[Amphimedon queenslandica]
Length = 793
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 164/300 (54%), Gaps = 19/300 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++ PTREL+ Q++ A+ +H++ +R +V GG + Q + +M+V TPGR
Sbjct: 403 PEVLIISPTRELTLQIYNEARKFTHNSIYRPVVVYGGTSVGHQLRQVEGGCNMLVCTPGR 462
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK----FLVPLKNRASKPNGQGFQT 133
++ ++ ++ +IK +LDEAD M D GFGP+IR+ F +P K + QT
Sbjct: 463 LIDFLQRKKVLLDNIKIFILDEADRMLDMGFGPEIRRVVQDFDMPEKGKR--------QT 514
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
++ SAT + +Q+L + + L + + + I++ G + + L+++L
Sbjct: 515 LMFSATFPEEIQQLAADFLEDYLFLTVGRVGGATSDIQQKVIEI-GEYERRDKLIEIL-- 571
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S + +V+VF T S+ + L+++ + HG+ +ER E L F+N G P
Sbjct: 572 SSAGQERVLVFVETKRSADFLATSLSQSGYPATSIHGDRFQREREEALRDFRN--GRAPV 629
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLA 311
L+ T +AARGLD+ +V HVI +D P +Y+HR GRT R+G KG T+ K KD+ LA
Sbjct: 630 LIATSVAARGLDIPEVKHVINYDLPQQIDEYVHRIGRTGRIGNKGLATAFFQKDKDMALA 689
>gi|390449448|ref|ZP_10235054.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
gi|389664141|gb|EIM75649.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
Length = 470
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 150/309 (48%), Gaps = 16/309 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + R ++ GG QE L D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLERGADVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 129 TPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTR---------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEALLQV 190
QT+ SATM + KL ++ Q + S + F+K S K E L +
Sbjct: 179 QTLFFSATMPPEITKLTEQFLQAPVRVEVSRPATTATNITQRFVKCGSKPWEKRERLRSL 238
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ ++FCN + + L ++ HG++ + R+ L F+ G+
Sbjct: 239 IDSQGDTLKNAIIFCNRKSEVATLFRSLVRHEYDAGALHGDMDQRARMTMLENFRK--GN 296
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV +D+AARGLD+ DV HV FD P ++ DY+HR GRT R G KG +L+ K D
Sbjct: 297 LKLLVASDVAARGLDIPDVSHVFNFDIPTHADDYVHRIGRTGRAGRKGAAFTLITKADRK 356
Query: 310 LADRIEEAI 318
D IE+ I
Sbjct: 357 YMDSIEKLI 365
>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
Length = 543
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 190 PIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 249
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 250 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 301
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + ++ SA H +++ K + +++ LE
Sbjct: 302 ATWPKEVRQLASDFLNDFIQVNIGSMD---LSANHRITQIVEVVSDFEKRDKMIKHLEKI 358
Query: 195 L-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + NK ++F T + + FL ++ ++ HG+ ER L +FKN G P
Sbjct: 359 MDDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKN--GKSPI 416
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
+V TD+A+RG+D+ D+ HVI +D+P NS DY+HR GRT R GAKG +
Sbjct: 417 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITF 466
>gi|429843833|gb|AGA16734.1| Vasa protein [Kryptolebias marmoratus]
Length = 641
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 153/289 (52%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q+F A+ + R +V GG Q + +++ GTP
Sbjct: 277 QEPEAIIVAPTRELINQIFLEARKFAFGTCVRPVVVYGGVSTGYQIREILRGCNVLCGTP 336
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 337 GRLLDVIGKGKIGLSKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 392
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + F++++ K E LL +L+ +
Sbjct: 393 FSATYPEDIQRMASDFLKTDYLFLAVGVVGGACSDVEQTFVQVA-KFAKREQLLDILKTT 451
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 452 GSE--RTMVFVETKRMADFIAAFLCQEKVPTTSIHGDREQREREQALTDFRS--GKCPVL 507
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 508 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 556
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 174/338 (51%), Gaps = 35/338 (10%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQ 60
LR +EAM PR PR ++L PT ELS QV + +SIS A FRS + +GG R + Q
Sbjct: 323 LRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQ 382
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFLV-- 117
+SL +D+++ TPGR L +++G + +++ +V DE D +F + GF + + +
Sbjct: 383 LESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGFEQVLHQLITVA 442
Query: 118 PLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177
P+ Q + V+AT+ + V E + ++H+ A +
Sbjct: 443 PVTT----------QYLFVTATLPLDIYNKVVETFPDCEVIMGPSIHRTSARLEEILVDC 492
Query: 178 SGSE-----------NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-----N 221
SG + NK AL++++E S + K +VFCN + + R V++ L +
Sbjct: 493 SGDDNDEKNPETAFSNKKLALVKIIEESPVR--KTIVFCNKIETCRKVENVLTRLDRKAS 550
Query: 222 QISTVNYHGEVPAQERVENLNKFKN-EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLN 279
QI + +H + ++R+ N+ F N + D LVCTD A+RG+D +V+HV++FD+P +
Sbjct: 551 QIKVLPFHAALDQEKRIANMKAFLNKQSSDSMFLVCTDRASRGIDFTNVNHVVLFDYPRD 610
Query: 280 SIDYLHRTGRTAR-MGAKGKVTSLVAKKDVLLADRIEE 316
+Y+ R GRTAR GK K V LA R+ E
Sbjct: 611 PSEYVRRVGRTARGASGDGKAFVFAVGKQVSLARRVME 648
>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
Length = 600
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 151/304 (49%), Gaps = 10/304 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q++ A+ ++ R ++ GG Q L D++V TPGR
Sbjct: 224 PGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGR 283
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G + I +L LDEAD M D GF P IR+ ++ P G QT++ S
Sbjct: 284 LSDFIERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRI---VEQEDMPPVGHR-QTLMFS 339
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + +++ +N L L+ +E S
Sbjct: 340 ATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPEEKQNTLLDLISTVEVSR 399
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G +VF T + ++ L NQ+ + HG+ ++R L FK+ G P +V
Sbjct: 400 RQG-LTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKS--GKTPVMV 456
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V HVI +D P + DY+HR GRT R G KG T+ D LA +
Sbjct: 457 ATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDSDAPLARSL 516
Query: 315 EEAI 318
E +
Sbjct: 517 VEVL 520
>gi|429462585|ref|YP_007184048.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338099|gb|AFZ82522.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 435
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 161/302 (53%), Gaps = 28/302 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL+ QV+ S + RS ++ GG QE++L +++V TPGR+
Sbjct: 90 RVLILVPTRELANQVYDSVVIYSKNTNLRSVVLFGGADHYNQENNLKLGCEILVATPGRL 149
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
+ HIE GN+ +I+ VLDEAD M D GF PDI K + L KNR QT+ S
Sbjct: 150 IAHIEQGNLHLQNIEIFVLDEADRMLDMGFMPDIDKIISKLPKNR---------QTLFFS 200
Query: 138 ATMTKAVQKLVDEECQGIAHLRTS-----TLHKKIASARHDFIKLSGSENKLEALLQVLE 192
AT +K ++K+ G+++L+ T IA + + K+EA++ +L
Sbjct: 201 ATFSKFMRKI------GMSYLKDPVELDITSPNSIADNVEQLSYIVPNRFKMEAVVSILT 254
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +++F NT S+ + FL + I + HG+ ER L FKN G
Sbjct: 255 ARVLE--TIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTAVLESFKN--GILR 310
Query: 253 TLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA--KKDVL 309
LV TD+AARGLD L + VI FD P + DY+HR GRT R G SL++ ++DVL
Sbjct: 311 VLVATDVAARGLDVLGISCVINFDIPHSPEDYVHRIGRTGRANNTGVAISLISNDEEDVL 370
Query: 310 LA 311
L+
Sbjct: 371 LS 372
>gi|359487443|ref|XP_002267581.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis
vinifera]
Length = 617
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 156/309 (50%), Gaps = 11/309 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ AK S+ R + GG + Q L +D++V TPGR
Sbjct: 233 PLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 292
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + ++YL LDEAD M D GF P IR+ + + P QT+L S
Sbjct: 293 LVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIV----EQMDMPPRGVRQTMLFS 348
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R +F++ S + L LL +
Sbjct: 349 ATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRENG 408
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G + +VF T + A++H+L N + HG+ QER L FK+ G P
Sbjct: 409 THGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKS--GATPI 466
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + LA
Sbjct: 467 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLAR 526
Query: 313 RIEEAIRKN 321
+ E ++++
Sbjct: 527 GLAELMQES 535
>gi|451823243|ref|YP_007459517.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776043|gb|AGF47084.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 458
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 155/295 (52%), Gaps = 24/295 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R+++L PTREL+ QV+ K S + RS ++ GG QED L +++V TPGR+
Sbjct: 98 RSLILVPTRELASQVYESIKIYSKNTNLRSLVLFGGTDHNSQEDKLRLGSEILVATPGRL 157
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ H+E G++ +I LVLDEAD M D GF PD+ K + L Q +L SA
Sbjct: 158 IAHMEQGSLHTQNISILVLDEADRMLDMGFMPDVDKIVNALPKYK--------QILLFSA 209
Query: 139 TMTKAVQKLVDEECQGIAHLRTS-----TLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
T + +++K+ G+++L T+ IA + ++NKL A+L +L+
Sbjct: 210 TFSNSIRKI------GLSYLNNPVEIDVTVPNSIADTVEQISYMVPNQNKLLAILFILQS 263
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ V++F NT ++ + FL I + HG+ +R L F+N G
Sbjct: 264 KPLES--VIIFTNTKLATIKLSSFLFSKNIKCDSIHGDKNQIDRTIALENFRN--GSLNV 319
Query: 254 LVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TD+AARGLD + V +VI FD P N DY+HR GRT R KG SL + ++
Sbjct: 320 LVATDVAARGLDVVGVSYVINFDVPFNPEDYVHRIGRTGRANNKGSAISLCSYEE 374
>gi|357602063|gb|EHJ63262.1| hypothetical protein KGM_09907 [Danaus plexippus]
Length = 496
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 174/321 (54%), Gaps = 24/321 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPI---DMVVGT 74
P AVV+ P+REL+ Q+ VA+++ + + + GG + ++ +N PI D+++ T
Sbjct: 162 PLAVVITPSRELATQIAEVAENVCQNLNINISTLVGG---KTKQKMMNPPIEYSDLLITT 218
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDI----RKFLVPLKNRASKPNGQG 130
G + + G ++ +++LDEADT+ D F + +KF + K P G
Sbjct: 219 LGAYSKLVTTGICKIHNVHHIILDEADTLLDDSFIDKLSLLLKKFPIQFKVDIKNP-PSG 277
Query: 131 FQTVLVSATMT----KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
Q LVSAT+ +AV +D Q + + T +H+ + H FI+L ++ LE
Sbjct: 278 CQVTLVSATLPHELPEAVNSFMDP--QSLRTITTDNVHRILPHVPHKFIRLGKAQKPLE- 334
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
LL++++ ++ VM+F N ++ + FLNEN I +N +G + ++ FKN
Sbjct: 335 LLKLVQADVNLQRPVMIFSNKTSTCDFLAMFLNENNIECININGRMAVPLKMGKYEMFKN 394
Query: 247 EDGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLV 303
G L CTD+A+RGLD L H+I +DFPL + DY+HR GRT R+G+ +T+ V
Sbjct: 395 --GQVNVLSCTDIASRGLDTLRTRHIINYDFPLYTSDYIHRCGRTGRLGSSNDCSITNFV 452
Query: 304 AK-KDVLLADRIEEAIRKNES 323
A +++ L +IE A+RK+ +
Sbjct: 453 AWPREIQLVQKIETALRKHAA 473
>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Talaromyces marneffei ATCC 18224]
gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Talaromyces marneffei ATCC 18224]
Length = 554
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 150/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 199 PIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 259 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTCMWS 310
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 311 ATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 369
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ NK ++F T + + FL ++ ++ HG+ ER L +FKN G
Sbjct: 370 -----DRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKN--GK 422
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HVI +D+P NS DY+HR GRT R GAKG +
Sbjct: 423 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITF 475
>gi|366166796|ref|ZP_09466551.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 499
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 164/322 (50%), Gaps = 26/322 (8%)
Query: 7 AMLGVLM------KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
A+ GV M K P+ ++L PTREL+ QV K ++ H +T V G + +
Sbjct: 55 AVFGVSMLQMIDPKADGPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVE 114
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL- 119
+L I +V GTPGR HI GN++ +I++L+LDEAD M D GF + K + L
Sbjct: 115 IQALRRGISIVTGTPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLP 174
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
K+R T+L SAT+ ++++ E + + + K + + + ++
Sbjct: 175 KDRV---------TLLFSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDN 225
Query: 180 SE--NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+ +L LL + P M+FCNT + V FL+ + + HG++P R
Sbjct: 226 QQKNTELNHLLLIERPE-----SCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARR 280
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
++ + +FK GD LV TD+AARG+ +D + VI +D PL +Y+HR GRT R G
Sbjct: 281 MKTIQQFKQ--GDFHLLVATDVAARGIHIDNLSLVINYDVPLEKDNYVHRIGRTGRAGNG 338
Query: 297 GKVTSLVAKKDVLLADRIEEAI 318
G+ +LV +D++ IEE I
Sbjct: 339 GRALTLVTSEDIMSLYAIEEHI 360
>gi|146096170|ref|XP_001467723.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|398020594|ref|XP_003863460.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|322501693|emb|CBZ36774.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 614
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 8/304 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q++ + ++ R +V GG R Q L ++V TPGR
Sbjct: 212 PSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTRGCGLLVATPGR 271
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G Y D+++LVLDEAD M D GF P IR +V + P G+ QT+L S
Sbjct: 272 LSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRA-IVQGPDSDMPPPGER-QTLLYS 329
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q++ E L+ + + D ++ +K LL+VL+ +
Sbjct: 330 ATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDMDKRGCLLEVLKE--HQ 386
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G +V+VF + ++ +L +++I + HG+ +ER E L+ FK+ G C LV T
Sbjct: 387 GERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKS--GVCRVLVAT 444
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+A+RGLD+ +V V+ +D P N DY+HR GRT R G +G S K+ + D +
Sbjct: 445 DVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRNIVDDLIP 504
Query: 317 AIRK 320
+R+
Sbjct: 505 LLRE 508
>gi|451811659|ref|YP_007448114.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776817|gb|AGF47816.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 456
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 161/302 (53%), Gaps = 28/302 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL+ QV+ S + RS ++ GG QE++L +++V TPGR+
Sbjct: 90 RVLILVPTRELANQVYDSVVIYSKNTNLRSVVLFGGADHYNQENNLKLGCEILVATPGRL 149
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
+ HIE GN+ +I+ VLDEAD M D GF PDI K + L KNR QT+ S
Sbjct: 150 IAHIEQGNLHLQNIEIFVLDEADRMLDMGFMPDIDKIISKLPKNR---------QTLFFS 200
Query: 138 ATMTKAVQKLVDEECQGIAHLRTS-----TLHKKIASARHDFIKLSGSENKLEALLQVLE 192
AT +K ++K+ G+++L+ T IA + + K+EA++ +L
Sbjct: 201 ATFSKFMRKI------GMSYLKDPVELDITSPNSIADNVEQLSYIVPNRFKMEAVVSILT 254
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +++F NT S+ + FL + I + HG+ ER L FKN G
Sbjct: 255 ARVLE--TIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTAVLESFKN--GILR 310
Query: 253 TLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA--KKDVL 309
LV TD+AARGLD L + VI FD P + DY+HR GRT R G SL++ ++DVL
Sbjct: 311 VLVATDVAARGLDVLGISCVINFDIPHSPEDYVHRIGRTGRANNTGVAISLISNDEEDVL 370
Query: 310 LA 311
L+
Sbjct: 371 LS 372
>gi|420249963|ref|ZP_14753195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398063077|gb|EJL54833.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 513
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 77 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVDIVVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 137 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 189 TFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKREMLTHLIK--Q 242
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 243 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNN--TLQVLV 300
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 301 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 360
Query: 315 EEAIRKN 321
E+ I+++
Sbjct: 361 EKLIKRS 367
>gi|416919360|ref|ZP_11932532.1| ATP-dependent RNA helicase, partial [Burkholderia sp. TJI49]
gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49]
Length = 391
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 24/304 (7%)
Query: 23 LCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI 82
L PTREL++QV + + H RS +V GG + PQ L +++++ TPGR+L H+
Sbjct: 1 LTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHV 60
Query: 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVSATMT 141
+ G ++ LVLDEAD M D GF PD+++ L L K R QT+L SAT +
Sbjct: 61 QQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKER---------QTLLFSATFS 111
Query: 142 KAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
++KL Q I R+++ + + +D +K A++Q+L +G
Sbjct: 112 PEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDV----AEGDKQAAVVQLLR---DRG 164
Query: 199 -NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V+VFCN+ + + L + + HG+ ER++ L+ FK G+ LV T
Sbjct: 165 LKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKR--GEIEALVAT 222
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + IE+
Sbjct: 223 DVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEK 282
Query: 317 AIRK 320
I++
Sbjct: 283 LIKR 286
>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
Length = 537
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 154/292 (52%), Gaps = 20/292 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 191 PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 250
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK L + +P+ QT++ S
Sbjct: 251 LIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQI-----RPD---RQTLMWS 302
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V+ L + + +L SA H +++ +K + +L+ LE
Sbjct: 303 ATWPKEVRNLAADFLTDFIQVNIGSLD---LSANHRITQIVEVVSEGDKRDRMLKHLEKV 359
Query: 195 L---SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ K NKV++F T + + L ++ ++ HG+ ER L++FK G
Sbjct: 360 MDDKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKS 417
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ ++ HVI +D+P NS DY+HR GRT R GA G +L
Sbjct: 418 PIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGANGTAITL 469
>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
Length = 640
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 154/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q ++ ++V GTP
Sbjct: 280 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGTP 339
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L + P+ + QT++
Sbjct: 340 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRR----LVSSPGMPSKENRQTLM 395
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L + + L + + FI+++ +K E LL +L+
Sbjct: 396 FSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLLDLLK-- 452
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 453 TTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVL 510
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 511 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 559
>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
Length = 570
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 153/306 (50%), Gaps = 14/306 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR+++L PTREL+ QV + + ++ GG + Q L+ +D+++
Sbjct: 76 KARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILDRGVDVLIA 135
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L + G ++ D+K LV+DEAD M D GF PD+++ + L QT
Sbjct: 136 TPGRLLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMR--------QT 187
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+ SAT+ ++KL DE + S A F+ + +K E L ++
Sbjct: 188 LFFSATLGPEIRKLADEFLMNPKEISVSA-QSSTAVTVEQFLAVVDHIDKRETLRHIIR- 245
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ +FCN + L ++ V HG++ R+E+L KFK+ G+
Sbjct: 246 -IENLKNAFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKS--GEARL 302
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LVC+D+ ARG+D+ V HV FD P+++ DY+HR GRT R G GK ++ + +D
Sbjct: 303 LVCSDVVARGIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETGKAFTIASPEDGRFVA 362
Query: 313 RIEEAI 318
IE I
Sbjct: 363 AIEGLI 368
>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
Length = 444
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 22/309 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+ +VL PTREL+ QV + + FRS ++ GG + PQ+ L +D+VV TPGR
Sbjct: 75 PKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQKLIKGVDIVVATPGR 134
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
+L H++ ++ I+ LVLDEAD M D GF DIR+ + +P K QT+L
Sbjct: 135 LLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKR----------QTLL 184
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT + ++KL E + ++ + + + + + ++L +
Sbjct: 185 FSATFSSEIKKLASEFLEQPEQIQVTPQNTATTLVSQLVYPVDKNRKR-----ELLSQQI 239
Query: 196 SKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+GN +V++F T + + + L+++ IS HG R L FK G
Sbjct: 240 GEGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKA--GTIRA 297
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARG+D+D + HV+ F+ P DY+HR GRTAR G +G SLV ++ L
Sbjct: 298 LVATDIAARGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLR 357
Query: 313 RIEEAIRKN 321
IE+ + K+
Sbjct: 358 DIEKLLGKD 366
>gi|357634253|ref|ZP_09132131.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
gi|357582807|gb|EHJ48140.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
Length = 492
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 15/303 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+EQ++R + R R+ ++ GG + PQ +L +D++V PGR+
Sbjct: 74 RALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQGVDIIVACPGRL 133
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ GN+ + ++ LVLDEAD MFD GF PDI++ L L + QT+L SA
Sbjct: 134 LDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSER--------QTLLFSA 185
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM A+ L E +R + +++ H +S ++ K LL +LE + +
Sbjct: 186 TMPPAISGLAHETLTDPVTVRIGHM-APLSTVEHAIYPISHTQ-KAPLLLHLLEEAGKQ- 242
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
V+VF T + ++ + L + G + ++R ++ F+ G LV TD
Sbjct: 243 -SVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRR--GSFQVLVATD 299
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+ V HV+ FD P + Y HR GRT R +G+ + V +D+ + IE
Sbjct: 300 IAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESH 359
Query: 318 IRK 320
++K
Sbjct: 360 MKK 362
>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
Length = 732
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 147/292 (50%), Gaps = 16/292 (5%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ P A+++ PTREL Q++ A+ + R +V GG + Q L +VVGT
Sbjct: 367 PQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEKGAHVVVGT 426
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L I G + +KYL+LDEAD M D GF P+IRK + P QT+
Sbjct: 427 PGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTF----DMPEKGQRQTL 482
Query: 135 LVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
+ SAT +Q+L E E + R + I H K K E L+++L
Sbjct: 483 MFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKY----EKREKLVEIL 538
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + ++ +VF T S+ + +L++ Q + HG+ +ER E L FK G
Sbjct: 539 NQAGT--DRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKT--GRA 594
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P L+ T +AARGLD+ V HVI +D P +Y+HR GRT R G GK TS
Sbjct: 595 PILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSF 646
>gi|452125822|ref|ZP_21938405.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|452129183|ref|ZP_21941759.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451920917|gb|EMD71062.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|451925053|gb|EMD75193.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
Length = 457
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 162/305 (53%), Gaps = 16/305 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 68 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEILVATPGRL 127
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+E N+ + LVLDEAD M D GF PD+ + + R P QG L SA
Sbjct: 128 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERII-----RLLPPQRQGL---LFSA 179
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++KL L + + + ++G + K A++ +++ S+G
Sbjct: 180 TFSNEIRKLGRSYLNQPIELEVAARNATADTVTQIAYPMTG-DAKRAAVVHLVK---SRG 235
Query: 199 -NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+V+VF NT + + L + + + HG+ +R++ L FK G+ LV T
Sbjct: 236 LKQVIVFSNTKIGTARLARDLERDGVKAESIHGDKSQADRMKALEAFKA--GELEVLVAT 293
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L ++ IE+
Sbjct: 294 DVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERYLLDIEK 353
Query: 317 AIRKN 321
I++
Sbjct: 354 LIKRQ 358
>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 517
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 163/306 (53%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ +L + +D+VV TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 139 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 191 TFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDR----DKKRELLTHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L+++ IS + HG R L +FK DG LV
Sbjct: 245 HNWFQVLVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 303 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 362
Query: 315 EEAIRK 320
E+ I++
Sbjct: 363 EKLIKR 368
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 163/307 (53%), Gaps = 19/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R ++L PTREL++Q+ +S + + R T V GG + PQ+ L +D+VV TPGR+
Sbjct: 80 RCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQKADLMRGMDIVVATPGRL 139
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L H+E + ++ LVLDEAD M D GF DIR+ L L K R QT+L S
Sbjct: 140 LDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQLPKTR---------QTLLFS 190
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEALLQVLEPSLS 196
AT + ++KL E + + + + A+ + +G + +L A L + E ++S
Sbjct: 191 ATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLARL-INERAMS 249
Query: 197 KGNKVMVFCNTLNSS-RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VFC T + R N +++ HG+ Q R++ L FK DG LV
Sbjct: 250 ---QVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFK--DGKLRILV 304
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ D+ V+ FD P + DY+HR GRT R G G SL+ ++ L + I
Sbjct: 305 ATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQKLLEAI 364
Query: 315 EEAIRKN 321
E+ R+
Sbjct: 365 EKLTRQT 371
>gi|381150145|ref|ZP_09862014.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882117|gb|EIC27994.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 434
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 160/319 (50%), Gaps = 12/319 (3%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL EA + PRA++L PTREL+ Q+ + A +S H + ++ GG + Q
Sbjct: 71 LLNDTEAKEAANQPIKNPRALILAPTRELAIQIHKDALLLSEHLPLKFALIYGGTDYQKQ 130
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
D + + +D+++GTPGRI+ + I+ VLDEAD MFD GF DIR L +
Sbjct: 131 LDKIKSNVDVIIGTPGRIIDFYKQQAFSLDHIQASVLDEADRMFDLGFIKDIRYLLRRMP 190
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
R + N +L SAT++ V +L E ++ T S + +
Sbjct: 191 PRDQRLN------MLFSATLSYKVTELAYEHMNNPVLIKIETETVTSRSIKQTAF-CPSN 243
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E K+ L+ +L+ + + ++F NT + +D L N T G+VP ++R
Sbjct: 244 EQKIPLLIGILQ--QYQPQRSIIFVNTKRCAELLDDTLTANGFKTAALSGDVPQEKRQRL 301
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
LN F ++ + L+ TD+AARGL + DV HVI +D P + DY+HR GRTAR GA G+
Sbjct: 302 LNDF--QENNVSLLIATDVAARGLHIPDVSHVINYDLPQDVEDYVHRIGRTARFGASGEA 359
Query: 300 TSLVAKKDVLLADRIEEAI 318
S + ++ IE I
Sbjct: 360 ISFICEEYAYSMPDIEAYI 378
>gi|390571862|ref|ZP_10252096.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389936192|gb|EIM98086.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 513
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 77 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVDIVVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 137 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 189 TFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKREMLTHLIK--Q 242
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 243 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNN--TLQVLV 300
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 301 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 360
Query: 315 EEAIRKN 321
E+ I+++
Sbjct: 361 EKLIKRS 367
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 154/303 (50%), Gaps = 17/303 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV K+ H RST+V GG + PQ +L +++V+ TPGR+
Sbjct: 94 RALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAALRAGVEIVIATPGRL 153
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ + + LV+DEAD M D GF PD+++ L+P K Q ++
Sbjct: 154 LDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKKR----------QNLMF 203
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + ++ K+ + K + + ++
Sbjct: 204 SATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDSDDAKRDIVAHLIRGRQL 263
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K +V+VF NT + + L + + HG+ ER+ L FK G+ LV
Sbjct: 264 K--QVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKG--GEIDVLVA 319
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ D+ VI +D P N+ DY+HR GRT R GA G SL KD L IE
Sbjct: 320 TDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDERLLLDIE 379
Query: 316 EAI 318
+ I
Sbjct: 380 KLI 382
>gi|401426793|ref|XP_003877880.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 622
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 8/304 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTRELS Q++ + ++ R +V GG R Q L ++V TPGR
Sbjct: 220 PSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTRGCGLLVATPGR 279
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G Y D+++LVLDEAD M D GF P IR +V + P G+ QT+L S
Sbjct: 280 LSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRA-IVQGPDSDMPPPGER-QTLLYS 337
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q++ E L+ + + D ++ +K LL+VL+ +
Sbjct: 338 ATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQD-VRWVEDVDKRGCLLEVLKE--HQ 394
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G +V+VF + ++ +L +++I + HG+ +ER E L+ FK+ G C LV T
Sbjct: 395 GERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKS--GVCRVLVAT 452
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+A+RGLD+ +V V+ +D P N DY+HR GRT R G +G S K+ + D +
Sbjct: 453 DVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTALSFFNDKNRNIVDDLIP 512
Query: 317 AIRK 320
+R+
Sbjct: 513 LLRE 516
>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 539
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 160/315 (50%), Gaps = 20/315 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV + H + ++ GG + Q+++LN
Sbjct: 108 EILSGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALN 167
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF---LVPLKNR 122
+D+++ TPGR++ E G ++ K LV+DEAD M D GF PDI K L P++
Sbjct: 168 RGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIR-- 225
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+ SATM +++L D + T + +AS + + ++
Sbjct: 226 ---------QTLFFSATMAPEIRRLADMFLHNPKEI-TVSRPSSVASTIETGLVIVEEDD 275
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K AL ++L S ++FCN + L ++ S HG++P R L
Sbjct: 276 KRRALRKLLRE--SDMQNAIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLE 333
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FK+ G+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G G S
Sbjct: 334 AFKS--GELKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYS 391
Query: 302 LVAKKDVLLADRIEE 316
L + LA+ IE+
Sbjct: 392 LATPYEQPLAEAIEK 406
>gi|451987161|ref|ZP_21935321.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
gi|451755216|emb|CCQ87844.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
Length = 449
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 164/311 (52%), Gaps = 19/311 (6%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ A VL PTREL+ Q+ + +S+ R ++ GG + Q +L +VV T
Sbjct: 83 PKGLFACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVAT 142
Query: 75 PGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
PGR++QH+E+ IK+LVLDEAD + D FG I K L +P K R
Sbjct: 143 PGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIP-KERT-------- 193
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T L SATMT V KL + S+ ++ +++ ++ + + +A L L
Sbjct: 194 -TYLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYLLMPLKDK--DAYLIYL 250
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
SL++ N +++F T++ ++ + L V HG++ +R+ L KFK+ G
Sbjct: 251 INSLAQ-NSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKS--GGR 307
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G GK +LV + DV L
Sbjct: 308 RVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVEL 367
Query: 311 ADRIEEAIRKN 321
RIE+ + K
Sbjct: 368 VQRIEQVVGKK 378
>gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 452
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 12/304 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RPRA++L PTREL Q+ + A+ + H F + GG Q+++L + D+V+GTPG
Sbjct: 77 RPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQKNALKDGADIVIGTPG 136
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ +++ I+ LV+DEAD MFD GF PD+R L L P Q ++
Sbjct: 137 RLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRL------PPFDQRQNLMF 190
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ + V +L E + + S +K+ + R + + L NK + L +
Sbjct: 191 SATLNQRVMEL-SYEFMNVPQ-KVSVTPEKMTAERVEQV-LYHVSNKEKFPLLLGLLRRE 247
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ M+F NT + + LN N+ G+V ++R+ L +FK G+ L+
Sbjct: 248 GMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKR--GELAILIA 305
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+A+RGL +D V HVI +D P ++ DY+HR GRTAR GA+GK SL + + IE
Sbjct: 306 TDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFYIEAIE 365
Query: 316 EAIR 319
E IR
Sbjct: 366 EYIR 369
>gi|420137836|ref|ZP_14645791.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
gi|403249405|gb|EJY62906.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CIG1]
Length = 449
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHGSVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|326514124|dbj|BAJ92212.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 173/338 (51%), Gaps = 35/338 (10%)
Query: 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQ 60
LR +EAM PR PR V+L PT ELS QV + +SIS FRS + +GG R + Q
Sbjct: 315 LRKEEAMGIHKPSPRNPRVVILTPTAELSSQVLQNCRSISKSGVPFRSMVATGGFRQKTQ 374
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKF--LV 117
+SL+ +D+++ TPGR L +++G + +++ V DE D +F + GF + + +
Sbjct: 375 LESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCAVFDEVDILFSEEGFEQVLHQLITIA 434
Query: 118 PLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177
P+ Q + V+AT+ + V E L ++H+ A +
Sbjct: 435 PVTT----------QYLFVTATLPLDIYNKVVETFPDCEVLMGPSVHRTSARLEEILVDC 484
Query: 178 SGSE-----------NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-----N 221
SG++ NK ALL+++E S + K +VFCN + + R V++ L
Sbjct: 485 SGNDNDEKNPETAFSNKRTALLKIIEESPVR--KTIVFCNKIETCRKVENVLTRLDRKAT 542
Query: 222 QISTVNYHGEVPAQERVENLNKF-KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLN 279
QI + +H + +R+ N+ +F K + D LVCTD A+RG+D +V+HV++FD+P +
Sbjct: 543 QIKVLPFHAALDQAKRIANMKEFLKKQTTDSMFLVCTDRASRGIDFTNVNHVVLFDYPRD 602
Query: 280 SIDYLHRTGRTAR-MGAKGKVTSLVAKKDVLLADRIEE 316
+Y+ R GRTAR GK K V LA R+ E
Sbjct: 603 PSEYVRRVGRTARGASGDGKAFVFAVGKQVSLARRVME 640
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 160/307 (52%), Gaps = 23/307 (7%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
AVVL PTREL+ Q+ ++I RS ++ GG + Q +L+ ++V TPGR++
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 80 QHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVLV 136
H+E+ ++KYL++DEAD + D FGP I K L +P + R T+L
Sbjct: 177 DHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERR----------TLLF 226
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS--ARHDFIKLSGSENKLEALLQVLEPS 194
SATMT V+KL + S+ + + R+ F + L L+ L
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNEL--- 283
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
GN +++F T+N ++ + L S + HG++ R+ LNKFK+ G TL
Sbjct: 284 --AGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKS--GARSTL 339
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+ VD VI +D P +S Y+HR GRTAR G GK +LV + D+ R
Sbjct: 340 VATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLR 399
Query: 314 IEEAIRK 320
IE I K
Sbjct: 400 IEATIGK 406
>gi|449448814|ref|XP_004142160.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Cucumis
sativus]
Length = 625
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 11/299 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 237 PLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINLQLRDLERGVDILVATPGR 296
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 297 LVDLLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPPGVRQTMLFS 352
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT + +Q+L + L + + + R +F+ + + L LL +
Sbjct: 353 ATFPREIQRLASDFLDKYIFLAVGRVGSSTDLIAQRVEFVHEADKRSHLLDLLHAQRANG 412
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + +VF T + A++H+L N HG+ QER + L F++ G+ P
Sbjct: 413 VQGKQSLTLVFVETKKGADALEHWLCLNGFPATTIHGDRTQQEREQALRSFRS--GNTPI 470
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + LA
Sbjct: 471 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNASLA 529
>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 433
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 153/306 (50%), Gaps = 15/306 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A++L PTREL+ QV K S S +VSGG + Q L +D++V TPGR+
Sbjct: 78 KALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTKMLKVGVDVLVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+H+ N+ +KYL LDEAD M D GF DI+K + +K Q QT++ SA
Sbjct: 138 LEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIK--------QKHQTLMFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + V+ L + L S + + + SE + LL L +
Sbjct: 190 TFSNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVYWV--SETRKNELLSEL-IGVKNW 246
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T S+ + L + I T HG+ R + + KF +G LV TD
Sbjct: 247 KQVLVFAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKF--TEGSVRVLVATD 304
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ D+ +V+ F P + DY+HR GRTAR G G SLV+ KD D IE
Sbjct: 305 VAARGLDIPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQFLDNIETL 364
Query: 318 I-RKNE 322
I RK E
Sbjct: 365 IGRKFE 370
>gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 424
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PRA+++ PTREL+ Q+ + AK+++ V GG + Q D L +D++V
Sbjct: 116 KPGAPRALIVAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRDQLGRKVDVLVA 175
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L E ++ + LVLDEAD M GF PD+++ + P + QT
Sbjct: 176 TPGRLLDFHEKRDVDLTQTEVLVLDEADRMLSMGFIPDVKRIV------RHTPKAEERQT 229
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
L SAT ++ + L ++ AH+ + A+ +S S +K L+ +L
Sbjct: 230 FLFSATFSQDILNLANQWTHDAAHVEIEVSLENAANIDQRVYLVSDS-DKQRLLVNLL-- 286
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ +V+VF N + R +D L + I+ G+VP R+ L+KF+N G+
Sbjct: 287 NQENMERVIVFGNRRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFRN--GEVDV 344
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+A RG+ + DV HV+ + P + DY+HR GRT R GA+G S V ++D
Sbjct: 345 LVATDVAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGRAGAEGVSISFVGEEDAFALP 404
Query: 313 RIEEAI 318
IE I
Sbjct: 405 GIESYI 410
>gi|390939956|ref|YP_006403693.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390193063|gb|AFL68118.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 463
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 166/321 (51%), Gaps = 33/321 (10%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQV---FRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
+L + + R ++VVLCPTREL+EQV R +H+ + + + GG R PQ +L
Sbjct: 66 LLSLHVNSMRIQSVVLCPTRELAEQVSNELRRLAQFTHNIKIVT--LCGGTRFVPQCINL 123
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRAS 124
+ +VVGTPGRILQH+++ + + IK LVLDEAD M D GF DI K + + ++
Sbjct: 124 EHGAHIVVGTPGRILQHLQEKTIDFSHIKTLVLDEADRMLDMGFYEDIEKIIAKMPSKR- 182
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD-------FIKL 177
QT+L SAT K ++++ E ++ LH I H K+
Sbjct: 183 -------QTLLFSATFPKEIERMCKE-------VQNDALHVSIEEEAHTSPNITQVCYKV 228
Query: 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
SE K +AL VL S +K V++FC T + +L + ++ HG++ +R
Sbjct: 229 EASE-KEKALKGVLLQSDAKS--VIIFCKTKIGVAELQGYLLDEGFDALSLHGDLEQIDR 285
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
E+L F N G LV TDLA+RGLD+ DV+ VI ++ P Y HR GRT RM +
Sbjct: 286 DEHLLLFAN--GSAQILVATDLASRGLDVKDVEMVINYELPQTMEIYTHRIGRTGRMDKE 343
Query: 297 GKVTSLVAKKDVLLADRIEEA 317
G S V ++ + + EA
Sbjct: 344 GMAVSFVTPREESFFEELTEA 364
>gi|429770137|ref|ZP_19302216.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429185399|gb|EKY26379.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 491
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 150/314 (47%), Gaps = 18/314 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
V KPR RA++L PTREL+ Q+ K H FR +V GG + PQE +L +D+
Sbjct: 63 VAPKPRTTRALILSPTRELATQIADSFKQYGAHLGFRVAVVFGGVKYGPQERALQQGLDV 122
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNG 128
+V PGR+L HI+ + + VLDEAD M D GF IR+ + +P K
Sbjct: 123 LVAAPGRLLDHIQQKTLDLSSTEIFVLDEADQMLDLGFIKPIRQIVSRIPAKR------- 175
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q + SATM + KL E + ++ + + + I + + K ALL
Sbjct: 176 ---QNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWV--EQGKKRALL 230
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
L S + +VF T + + V +L + HG +R L FKN
Sbjct: 231 TELF-SAPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKN-- 287
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G LV TD+AARG+D+D V HV+ F+ P Y+HR GRTAR G G S VA +
Sbjct: 288 GKLRVLVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDE 347
Query: 308 VLLADRIEEAIRKN 321
+ L IE+ R+
Sbjct: 348 MKLLKDIEKVTRQK 361
>gi|421158182|ref|ZP_15617475.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 25324]
gi|404549902|gb|EKA58715.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 25324]
Length = 449
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 161/323 (49%), Gaps = 42/323 (13%)
Query: 13 MKP-RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
M P R P RA++L PTREL++QV K+ S RST+V GG + PQ +L +++
Sbjct: 86 MSPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQTATLRGGVEI 145
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNG 128
V+ TPGR+L H++ + + LV+DEAD M D GF PD+++ L+P K R
Sbjct: 146 VIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP-KQR------ 198
Query: 129 QGFQTVLVSATMTKAVQKLVDE-----------ECQGIAHLRTSTLHKKIASARHDFIKL 177
Q ++ SAT + ++KL A T T++K A+ D +
Sbjct: 199 ---QNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATAERVTQTIYKVDEDAKSDAVAH 255
Query: 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
E KL+ +V+VF NT + + L + ++ HG+ ER
Sbjct: 256 IIRERKLK--------------QVIVFSNTKIGASKLARQLENDGVNASAIHGDKSQGER 301
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
+ L FK G LV TD+AARGLD+ D+ VI D P N+ DY+HR GRT R GA
Sbjct: 302 MAALEAFKQ--GQVEVLVATDVAARGLDITDLPCVINIDLPYNAEDYVHRIGRTGRAGAS 359
Query: 297 GKVTSLVAKKDVLLADRIEEAIR 319
G SL + KD L IE+ I+
Sbjct: 360 GDAISLFSDKDERLLVDIEKLIK 382
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|374292114|ref|YP_005039149.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424053|emb|CBS86918.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 530
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 152/310 (49%), Gaps = 16/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR+++L PTREL+ QV ++ H + ++ GG Q L+ +D+++
Sbjct: 69 RARMPRSLILEPTRELAAQVSESFETYGKHHKLSMALLIGGETFTEQVKKLDRGVDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQ 132
TPGR++ E GN++ DIK V+DEAD M D GF PDI + + L KNR Q
Sbjct: 129 TPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNR---------Q 179
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T+ SATM +++L D + + + + L +K +AL +L+
Sbjct: 180 TLFFSATMPPEIRRLADAFLSDPMEISVAPPASPAETVTQAMV-LVHEMDKRKALRHLLQ 238
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
K +FCN + L + + HG++ +R E L +FK G+
Sbjct: 239 TEDVK--NAFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQ--GEIS 294
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LVC+D+AARG+D+ + HV FD PL DY+HR GRT R G KG+ L D L
Sbjct: 295 LLVCSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGNKGRAFMLATPDDTKLV 354
Query: 312 DRIEEAIRKN 321
I I++
Sbjct: 355 GAIARLIKRE 364
>gi|358058712|dbj|GAA95675.1| hypothetical protein E5Q_02332 [Mixia osmundae IAM 14324]
Length = 693
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 162/307 (52%), Gaps = 15/307 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL Q+ A+ ++ + R +V GG + Q +L + D++ TPGR
Sbjct: 249 PTGLILAPTRELVSQIHDEARKFAYRSWVRPAVVYGGADIGSQIRALESGCDLLSATPGR 308
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +I+YLVLDEAD M D GF P IR+ + + P QT++ S
Sbjct: 309 LVDLIERGRISLANIQYLVLDEADRMLDMGFEPQIRRIV----EKEDMPGVMDRQTLMFS 364
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + +Q L + + L R + + I + + ++++ E+K LL VL +
Sbjct: 365 ATFPREIQYLAKDFLKDYVFLSVGRVGSTSENI-TQKVEYVE---DEDKRSMLLDVLY-A 419
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ G ++F T + ++ FL +NQI + HG+ +ER L F+ G P +
Sbjct: 420 IPPGGLTLIFVETKRMADMLEGFLRQNQIEATSIHGDRSQREREYALETFRT--GRTPVM 477
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V T +AARGLD+ +V HV+ +D P + DY+HR GRT R G G T+ + + +A
Sbjct: 478 VATAVAARGLDIPNVTHVVSYDLPSDIDDYVHRIGRTGRAGNTGNATAFFNRGNRNIARD 537
Query: 314 IEEAIRK 320
+ E +++
Sbjct: 538 LIELLKE 544
>gi|386400169|ref|ZP_10084947.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740795|gb|EIG60991.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 518
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 155/302 (51%), Gaps = 24/302 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+ R +VL PTRELS Q+ + H R ST+ GG + Q SL ++++V
Sbjct: 78 QPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVLVA 137
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L ++ + G +++LVLDEAD M D GF DIRK + +P+K
Sbjct: 138 TPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKR---------- 187
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM K + +L D + A + + + + + I++ S ALL L
Sbjct: 188 QTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQVDFSAKP--ALLAKL 245
Query: 192 ---EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
EP N+ +VF T + + V L + I HG R L +F+
Sbjct: 246 LKDEPV----NRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRERTLAQFRT-- 299
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G+ TLV TD+AARG+D+D + HVI FD P Y+HR GRTAR GA+G SLVA +
Sbjct: 300 GEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGE 359
Query: 308 VL 309
L
Sbjct: 360 EL 361
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 159/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L I
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361
Query: 315 EEAIRK 320
E I++
Sbjct: 362 ERLIKR 367
>gi|427407716|ref|ZP_18897918.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
gi|425713679|gb|EKU76691.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
Length = 463
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 20/305 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR+++L PTREL+ QV + + + ++ GG ++ Q +L +D+++ TPGR
Sbjct: 73 PRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALEKGVDVLIATPGR 132
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ + G ++ LV+DEAD M D GF PDI + L + QT+L S
Sbjct: 133 LMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQR--------QTLLFS 184
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
ATM ++KL D + + I R +T I +K+ S K EAL +LE
Sbjct: 185 ATMPPVIKKLADRFLDNPKSIEVARPATASTNIT---QRLVKVD-SRKKREALRAMLE-- 238
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ ++FCN + R ++ L + + HG++ R+ L +F+ DG L
Sbjct: 239 AEEVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFR--DGSVNIL 296
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V +D+AARGLD+ V HV FD P + DY+HR GRT R GAKG + VA +D D
Sbjct: 297 VASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDN 356
Query: 314 IEEAI 318
I++ I
Sbjct: 357 IQKLI 361
>gi|347970348|ref|XP_313440.5| AGAP003663-PA [Anopheles gambiae str. PEST]
gi|333468891|gb|EAA44671.5| AGAP003663-PA [Anopheles gambiae str. PEST]
Length = 677
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 151/288 (52%), Gaps = 19/288 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R P +VL PTREL++Q+ +VA + R+T + GG PQ L +++V+ TP
Sbjct: 286 RGPLVLVLAPTRELAQQIQQVATEFGSSSYIRNTCLFGGSSKGPQASDLRRGVEIVIATP 345
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ +E G + YLVLDEAD M D GF P IRK L + +P+ Q ++
Sbjct: 346 GRLIDFLESGTTTLQRVTYLVLDEADRMLDMGFEPQIRKILDHV-----RPDR---QILM 397
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF---IKLSGSENKLEALLQVLE 192
SAT K VQ+L + + +L SA H+ +++ ++K L ++LE
Sbjct: 398 WSATWPKEVQRLARDFLGDYVQINVGSLE---LSANHNITQHVRVIAEKDKNPELGKLLE 454
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+GN K+++F T + + +V+ HG+ QER L +F+N
Sbjct: 455 ELYHEGNPGKILIFTTTKRQCDRISMQIKRYGYDSVSMHGDKSQQERERALGRFRNSS-S 513
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
C LV TD+AARGLD+D + VI +D+P + DY+HR GRT R A G
Sbjct: 514 C-ILVATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATG 560
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 167/309 (54%), Gaps = 24/309 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV + + H RS +V GG + Q L +++++ TPGR+
Sbjct: 89 RALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMAELRRGVEILIATPGRL 148
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ G ++ LVLDEAD M D GF PD+++ L L + QT+L SA
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQR--------QTLLFSA 200
Query: 139 TMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++KL Q I R++ + ++ +K A+++++
Sbjct: 201 TFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEI----AEGDKQAAVVKLIRDRS 256
Query: 196 SKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VFCN+ + +SR + ++T HG+ ER++ L+ FK G+ L
Sbjct: 257 LK--QVIVFCNSKIGASRLARQLERDGVVATA-IHGDRSQNERMQALDAFKR--GEVEAL 311
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLAD 312
V TD+AARGLD+ ++ VI FD P N+ DY+HR GRT R GA G SL + + LAD
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371
Query: 313 RIEEAIRKN 321
IE+ I+++
Sbjct: 372 -IEKLIKRD 379
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 158/290 (54%), Gaps = 24/290 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R+++L PTREL++QV+ K S + RS ++ GG L Q+D L+ +++V TPGR+
Sbjct: 92 RSLILVPTRELADQVYECVKLYSKNTNLRSLVLFGGVDLEHQKDLLHKGCEILVATPGRL 151
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ HI N+ ++ LVLDEAD M D GF PD+ + + L + Q++L SA
Sbjct: 152 IAHIIQRNVSLVNVDILVLDEADRMLDMGFIPDVDRIVRMLPKKR--------QSLLFSA 203
Query: 139 TMTKAVQKLVDEECQGIAHLRTS-----TLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
T ++ V+KL G+ +L+ T+ IA S K +A+L ++
Sbjct: 204 TFSEDVRKL------GLTYLKDPVEADVTVPNSIADTVKQISYKVLSNEKYDAILFLIRS 257
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ K V+VF NT + + +L+ N+IS HG+ +ER+ LN FK+ + D
Sbjct: 258 TEMK--HVIVFTNTKIGANKLASYLSSNKISADCIHGDRTQKERIRILNDFKSSNLDV-- 313
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
LV TD+ ARGLD+ + HV+ FD P N+ DY+HR GRT R +G SL
Sbjct: 314 LVATDVVARGLDIAGISHVVNFDIPHNAEDYVHRIGRTGRANNEGIAVSL 363
>gi|395761621|ref|ZP_10442290.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 456
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 15/307 (4%)
Query: 17 RP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
RP RA++L PTREL+ QV ++ S + + ST++ GG + PQ L + +D++V TP
Sbjct: 79 RPIRALILAPTRELAAQVEESVRAYSKYTKLNSTVIFGGVGINPQIKQLKHGVDILVATP 138
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H+ G + ++ L+LDEAD M D GF DI+K L L + Q +L
Sbjct: 139 GRLLDHMGQGTVDLSKVEILILDEADRMLDMGFIRDIKKVLAVLPPKR--------QNLL 190
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT ++ ++ L D A + + + + + + +K +L L S
Sbjct: 191 FSATFSEEIKALADGLLNKPAMIEVARRNSTVEVIKQKIHPV--DRDKKHPMLSYLIKS- 247
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +V+VF T + + + L + I + HG R L++FK DG LV
Sbjct: 248 NNWTQVLVFTRTKHGANKLVEQLGADGIGALAIHGNKSQSARTRALSEFK--DGTLQVLV 305
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ +D P DY+HR GRT R GAKG+ SLV + + I
Sbjct: 306 ATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGAKGEAVSLVCVDEHEMLKDI 365
Query: 315 EEAIRKN 321
E+ I++
Sbjct: 366 EKLIKQT 372
>gi|343515522|ref|ZP_08752575.1| putative ATP-dependent RNA helicase [Vibrio sp. N418]
gi|342798212|gb|EGU33838.1| putative ATP-dependent RNA helicase [Vibrio sp. N418]
Length = 426
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 168/317 (52%), Gaps = 25/317 (7%)
Query: 11 VLMKPR-----RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
+L KP+ + RAV+L PTREL Q+ + + + + +S + GG ++ Q+ +L
Sbjct: 63 ILDKPKSRNRHQARAVILAPTRELVAQIAQNVRDYTKYTELKSVAIYGGEKMASQQKALE 122
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+D++V TPGR+++H+E N+ ++++LV DEAD M D GF I K + +K +K
Sbjct: 123 LGVDILVATPGRLIEHLELKNVSLVNLEFLVFDEADRMLDMGFISAIEKIMQGVK---TK 179
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSEN 182
P QT+L SAT + + KL E + IA R +T + IA + E
Sbjct: 180 P-----QTMLFSATFSAQMNKLAGEILRAPKRIAVARENTTAETIAHVVYPV----EQER 230
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K E L +++ +V+VF N ++ + L + I V HG+ R L+
Sbjct: 231 KRELLSELI--GRKNWKQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALD 288
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+FK +G ++ TD+AARGLD+ ++ HV+ FD P + DY+HR GRT R G KG S
Sbjct: 289 EFK--EGKARVMIATDVAARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQKGNAIS 346
Query: 302 LVAKKDVLLADRIEEAI 318
V +++ L ++E I
Sbjct: 347 FVNREEELTLQQVETLI 363
>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 537
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 161/329 (48%), Gaps = 37/329 (11%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LL H A + R PR ++L PTREL+ QV + + ++ GG Q
Sbjct: 62 LLEHGRA------RARMPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQ 115
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVP 118
+ L +D+++ TPGR+L H+E G ++ I+ LV+DEAD M D GF PDI + LVP
Sbjct: 116 DSKLLRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVP 175
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKLVDE--------ECQGIAHLRTSTLHKKIASA 170
QT+ SATM +Q+LV + E A + H +AS
Sbjct: 176 FTR----------QTLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASTAATVTHMLVASG 225
Query: 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
R D+ +K E L +++ N + +FCN + L ++ + V HG
Sbjct: 226 REDY-------DKREVLRELIRNCDGLQNGI-IFCNRKRDVAVLHRSLQKHGFNAVALHG 277
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGR 289
++ R++ L++F++ G+ LV +D+AARGLD+ V HV +D P +S DY+HR GR
Sbjct: 278 DMDQHARIKALDQFRS--GEATLLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVGR 335
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEEAI 318
T R G G +LV D IE+ I
Sbjct: 336 TGRAGRAGTAYTLVTHTDAKSVTAIEKLI 364
>gi|357130258|ref|XP_003566767.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like
[Brachypodium distachyon]
Length = 828
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 14/296 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ A +R ST + GG PQ L +D+VV TPGR
Sbjct: 231 PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGR 290
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + + YLVLDEAD M D GF P IRK + + + QT++ +
Sbjct: 291 LNDILEMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVKDIPS--------SRQTLMYT 342
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-ARHDFIKLSGSENKLEALLQVLEPSLS 196
AT K V+++ DE + ++ + +A+ A +++ KL L Q+L S
Sbjct: 343 ATWPKEVRRIADELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQILR-SHD 401
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G+K+++FC T + LN + HG+ ER + L++F++ G P LV
Sbjct: 402 SGSKILIFCTTKRMCDQLSRTLNRH-FGAAAIHGDKSQNEREKVLSQFRS--GRSPILVA 458
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
TD+AARGLD+ D+ VI +DFP DY+HR GRT R GA G + + +D A
Sbjct: 459 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDAKYA 514
>gi|407714673|ref|YP_006835238.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
gi|407236857|gb|AFT87056.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
Length = 530
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 162/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ +L + +D+VV TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 139 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 191 TFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDR----DKKRELLTHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 245 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 303 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 362
Query: 315 EEAIRK 320
E+ I++
Sbjct: 363 EKLIKR 368
>gi|381201506|ref|ZP_09908631.1| DEAD/DEAH box helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 463
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 20/305 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR+++L PTREL+ QV + + + ++ GG ++ Q +L +D+++ TPGR
Sbjct: 73 PRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALEKGVDVLIATPGR 132
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ + G ++ LV+DEAD M D GF PDI + L + QT+L S
Sbjct: 133 LMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQR--------QTLLFS 184
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
ATM ++KL D + + I R +T I +K+ S K EAL +LE
Sbjct: 185 ATMPPVIKKLADRFLDNPKSIEVARPATASTNIT---QRLVKVD-SRKKREALRAMLE-- 238
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ ++FCN + R ++ L + + HG++ R+ L +F+ DG L
Sbjct: 239 AEEVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFR--DGSVNIL 296
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V +D+AARGLD+ V HV FD P + DY+HR GRT R GAKG + VA +D D
Sbjct: 297 VASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDN 356
Query: 314 IEEAI 318
I++ I
Sbjct: 357 IQKLI 361
>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 401
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 160/309 (51%), Gaps = 16/309 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R+PR ++L PTREL+ Q+ +V K + H F S +V+GG Q + L + ID++V TP
Sbjct: 71 RKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQSKIDILVATP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L + + DI+ L++DEAD M D G GPD+ + + FQ
Sbjct: 131 GRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALIEAIPG--------DFQAAC 182
Query: 136 VSATMT-KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ-VLEP 193
SAT+ + K +E ++ + ++K + ++ L+ + +ALL+ +LE
Sbjct: 183 FSATLAGSGITKFAEEVLDSPEIIQVNAPNEK-SEQIQQWVYLANDKAHKKALLKAILED 241
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ +VFCN + + + +L IS+ HG+ +R+E KFK G
Sbjct: 242 ETCQS--AIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQ--GKIKV 297
Query: 254 LVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD L+V HVI +D P Y+HR GRT R G +LV + D+
Sbjct: 298 LVATDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVERHDITNLQ 357
Query: 313 RIEEAIRKN 321
RIE ++++
Sbjct: 358 RIEYHLQQS 366
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 164/318 (51%), Gaps = 22/318 (6%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P R A++L PTREL+ Q+ +++ +S ++ GG + Q L
Sbjct: 91 ALLENPARLFALILTPTRELAFQISEQFEALGSTIGIKSAVIVGGIDMMTQAMMLAKKPH 150
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
+V+ TPGR++ H+E+ +++YLV+DEAD + + F ++ K L +P +NR
Sbjct: 151 VVIATPGRLIDHLENTKGFTLKNLRYLVMDEADRILNMDFEEEVDKILKVIPRENR---- 206
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR--HDFIKLSGSENKL 184
+T L SATMTK V KL + ST ++ + + + FI E L
Sbjct: 207 -----RTYLYSATMTKKVAKLQRASLTDPVRVEVSTKYQTVDKLQQYYLFIPAKYKEVHL 261
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
LLQ L G +VFC T N ++ + L + + HG++ +R+ L KF
Sbjct: 262 VHLLQDL-----AGQSFIVFCATCNGTQKLALMLRNLGFTAIPLHGQMSQAKRLGALQKF 316
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K + + L+ TD+AARGLD+ VD VI +D P +S DY+HR GRTAR G GK + V
Sbjct: 317 KAQARNI--LLATDVAARGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKAVTFV 374
Query: 304 AKKDVLLADRIEEAIRKN 321
++ DV L RIE I K
Sbjct: 375 SQYDVELYQRIEHLIGKQ 392
>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 530
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 162/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ +L + +D+VV TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 139 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK--------RQNLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 191 TFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDR----DKKRELLTHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 245 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 303 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 362
Query: 315 EEAIRK 320
E+ I++
Sbjct: 363 EKLIKR 368
>gi|359424178|ref|ZP_09215300.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
gi|358240452|dbj|GAB04882.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
Length = 612
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 15/306 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRV-AKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R+P+A++L PTREL+ QV K +H + + + GG Q + L ++VGT
Sbjct: 97 RKPQALILAPTRELALQVAEAFGKYSAHMPKVKVLPIYGGQSYVVQLNGLKRGAQVIVGT 156
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ H++ G + ++++LVLDEAD M GF D+ + L A P+ + Q
Sbjct: 157 PGRVIDHLDRGTLDISELEFLVLDEADEMLTMGFAEDVERIL------ADTPDSK--QVA 208
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SATM KA+ +L + ++ + ++ ++++S + KL+AL + LE
Sbjct: 209 LFSATMPKAISRLAQQYLNDPEEIKVKAKTETASNITQRYLQVS-HQRKLDALTRFLE-- 265
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + + ++VF T ++ + L S V +G++ +R +N+ KN G L
Sbjct: 266 VEQFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTINQLKN--GTIDIL 323
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + HV+ +D P ++ Y+HR GRT R G G V+ ++ L
Sbjct: 324 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRA 383
Query: 314 IEEAIR 319
IE+A R
Sbjct: 384 IEKATR 389
>gi|389749883|gb|EIM91054.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 487
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 148/281 (52%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ + ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 135 PIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 195 LIDMLETQKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTLMFS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL + + + ++ +++ K L++ L+ ++
Sbjct: 247 ATWPKDVQKLAADFLKDMIQCNIGSMELTANHNIKQIVEICSDFEKRGKLIKHLDQISAE 306
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L +FK G P L+ T
Sbjct: 307 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKA--GRSPILIAT 364
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 365 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGLKG 405
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 27/310 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L HI + G I +LVLDEAD M + GF DI + + + QT
Sbjct: 131 TPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIM--------ESTSEEKQT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM + ++KL + ++ + IA L+ S KIA ++ + +++KLEAL +
Sbjct: 183 MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIA---QNYFAVK-NKDKLEALCR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIE 315
++V +IE
Sbjct: 352 REVSSIRQIE 361
>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 560
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 152/312 (48%), Gaps = 20/312 (6%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
+ G K R PR+++L PTREL+ QV H + ++ GG + Q D L+
Sbjct: 167 LAGSRAKARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDVLDKG 226
Query: 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNRAS 124
+D+++ TPGR+L E G ++ D K LV+DEAD M D GF PD+ + L PL+
Sbjct: 227 VDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLR---- 282
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKL 184
QT+ SATM ++KL D Q + S +A+ + E+K
Sbjct: 283 -------QTLFFSATMAPEIRKLADAFLQNPKTISVSA-PASVATTITAGLAFVQPEDKR 334
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
AL +++ ++FCN + L+++ HG++P R L KF
Sbjct: 335 RALRRLIR--SQDVQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKF 392
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K G+ LVC+D+AARG+D+ + HV FD P DY+HR GRT R G +G ++
Sbjct: 393 KA--GELQLLVCSDVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTIA 450
Query: 304 AKKDVLLADRIE 315
DV L IE
Sbjct: 451 TADDVKLVAAIE 462
>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 522
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 161/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 77 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVDIVVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 137 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 189 TFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPVDR----DRKRELLTHLIK--Q 242
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FKN LV
Sbjct: 243 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNN--TLQVLV 300
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 301 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 360
Query: 315 EEAIRK 320
E+ I++
Sbjct: 361 EKLIKR 366
>gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999]
Length = 426
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 153/302 (50%), Gaps = 12/302 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A+++ PTREL+ Q++ A+ +S H ++ GG Q +L N +D+++GT GR
Sbjct: 81 PKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTLTNGVDIIIGTTGR 140
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
IL + + G ++ VLDEAD MFD GF DIR + PN ++L S
Sbjct: 141 ILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRM------PNATERLSMLFS 194
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT++ VQ+L E H++ KK A+ + + ++K+ LL +LE +
Sbjct: 195 ATLSYRVQELAYEHMNNPTHVQIEP-EKKTATRVQEELFYPSDDDKIRLLLTLLENEWPE 253
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
K +VF NT S V +L + G+VP ++R+ + F G LV T
Sbjct: 254 --KAVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAK--GKLDILVAT 309
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGL ++ V HV FD P ++ DY+HR GRT R G G S +K L IE
Sbjct: 310 DVAARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAISFACEKYALNLPEIEA 369
Query: 317 AI 318
I
Sbjct: 370 YI 371
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 168/314 (53%), Gaps = 17/314 (5%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P+R A+VL PTREL+ Q+ +++ +S ++ GG Q +L
Sbjct: 85 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL-VPLKNRASKPN 127
+++ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L V ++R
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR----- 199
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
+T L SATMTK VQKL + S+ ++ + + +I + S+ K L
Sbjct: 200 ----KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIP-SKFKDTYL 254
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+ +L GN M+FC+T N+++ L + + HG++ +R+ +LNKFK +
Sbjct: 255 VYILNEL--AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAK 312
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V +
Sbjct: 313 ESSI--LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQY 370
Query: 307 DVLLADRIEEAIRK 320
DV L RIE I K
Sbjct: 371 DVELFQRIEHLIGK 384
>gi|425771138|gb|EKV09591.1| RNA helicase (Dbp), putative [Penicillium digitatum Pd1]
gi|425776662|gb|EKV14870.1| RNA helicase (Dbp), putative [Penicillium digitatum PHI26]
Length = 561
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 24/298 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 206 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 265
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 266 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTCMWS 317
Query: 138 ATMTKAVQKLVDEECQ-------GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + G L + +I DF K LE +++
Sbjct: 318 ATWPKEVRQLASDFLNDYIQVNVGSTDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 376
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ NK ++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 377 -----DRSNKCIIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQ--GK 429
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRTAR GAKG + ++
Sbjct: 430 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITFFTTEN 487
>gi|339481611|ref|YP_004693397.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338803756|gb|AEI99997.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 445
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 157/306 (51%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV + + + S ++ GG + PQ L + +D++V TPGR+
Sbjct: 79 RALILVPTRELAAQVEESVRDYGKYLKLSSMIMIGGVNINPQITRLKSRVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + I+ LVLDEAD M D GF DI+K L L + Q +L SA
Sbjct: 139 LDHVQQKTLSLSHIEILVLDEADRMLDMGFIRDIKKILALLPKQR--------QNLLFSA 190
Query: 139 TMTKAVQKLVDEECQG---IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + +Q L D I R + K+ H + + K E L +++
Sbjct: 191 TFSDEIQALADNLLNKPVMIEVARRNATADKVTHVVHPVDR----DRKKELLAHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ ++V+VF T + + + FL N I + HG R + L KFK GD LV
Sbjct: 245 HRWSQVLVFTRTKHGANKLAEFLLANGIPALAIHGNKSQSARTQALAKFKA--GDLQVLV 302
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+ ++ HV+ F+ P + DY+HR GRT R G++G SLV + L I
Sbjct: 303 ATDIAARGIDISELPHVVNFELPNVAEDYVHRIGRTGRAGSEGDAVSLVCVDETKLLTAI 362
Query: 315 EEAIRK 320
E+ I++
Sbjct: 363 EKLIKR 368
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 167/310 (53%), Gaps = 27/310 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L HI + G I +L+LDEAD M + GF DI + + + QT
Sbjct: 131 TPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIM--------ESTSEEKQT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM + ++KL + ++ + IA L+ S KIA ++ + +++KLEAL +
Sbjct: 183 MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIA---QNYFAVK-NKDKLEALCR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIE 315
++V +IE
Sbjct: 352 REVSSIRQIE 361
>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
Length = 469
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 21/317 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + S H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDKGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ I+ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFI---KLSGSENKLE 185
QT+ SATM ++++ + A + R +T + I F + S K
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRA 239
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ + ++FCN V L + + HG++ +R L+ F+
Sbjct: 240 VLRALIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFR 299
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG L+ +D+AARGLD+ V HV FD P ++ DY+HR GRT R G GK ++
Sbjct: 300 --DGSVRLLIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICT 357
Query: 305 KKDVLLADRIEEAIRKN 321
+D D +E+ ++K
Sbjct: 358 PRDEKYFDAVEKLLQKE 374
>gi|87125801|ref|ZP_01081644.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
gi|86166610|gb|EAQ67874.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
Length = 396
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 155/306 (50%), Gaps = 24/306 (7%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R+ RA+VL PTREL+ QV + S H RS +V GG ++ PQ L +D++V TP
Sbjct: 38 RQIRALVLTPTRELAAQVLDNVRQYSCHLPLRSEVVFGGVKINPQIQRLAQGVDVLVATP 97
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L + G + + ++ LVLDEAD M D GF DIR+ L L R QT+L
Sbjct: 98 GRLLDLHQQGAVRFEAVECLVLDEADRMLDMGFIHDIRRLLSRLPERR--------QTLL 149
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE-----ALLQV 190
SAT + ++KL QG+ H L ++A A + + + + ALL
Sbjct: 150 FSATFSAPIRKL----AQGMLH---HPLQIQVAPANQTARSVEQTVHPCDMGRKAALLTH 202
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L S +V+VF T + + V LN+ + HG R L FK DG
Sbjct: 203 LIRS-EDWQQVLVFSRTKHGANKVADQLNQEGLVAAAIHGNKSQGARTRALQGFK--DGS 259
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARG+D+ + HV+ D P + DY+HR GRT R G G SLVA ++ L
Sbjct: 260 VRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGESGHAISLVAAEEAL 319
Query: 310 LADRIE 315
L IE
Sbjct: 320 LLKAIE 325
>gi|453083070|gb|EMF11116.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 546
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 154/288 (53%), Gaps = 14/288 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG Q L +++ + TPGR
Sbjct: 198 PIVLILAPTRELAVQIQEEVSKFGKSSRIRNTCVYGGVPKGGQIRDLARGVEVCIATPGR 257
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 258 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTCMWS 309
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPSLS 196
AT K ++++ ++ Q + + H A+AR +++ K + +L+ LE +
Sbjct: 310 ATWPKEIRQMANDFQQNFIQVNVGS-HDLHANARITQIVEVVSDFEKRDKMLRHLEKIME 368
Query: 197 -KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
KGNK+++F +T + + FL ++ ++ HG+ ER LN+FK G P +V
Sbjct: 369 DKGNKILIFTSTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPIMV 426
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ D+ HV +D+P NS DY+HR GRT R G G +L
Sbjct: 427 ATDVASRGIDVKDITHVFNYDYPNNSEDYVHRIGRTGRAGRMGTAITL 474
>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
Length = 653
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 155/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ S R +V GG Q ++ +++ GTP
Sbjct: 294 QEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAHQIREISRGCNVLCGTP 353
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 354 GRLLDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 409
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + F++++ +K E LL +L+ +
Sbjct: 410 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVT-KFSKREQLLDLLKTT 468
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 469 GTE--RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVL 524
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 525 VATSVAARGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSF 573
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 155/316 (49%), Gaps = 42/316 (13%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV + H S ++ GG + PQ+ L +D++V TPGR+
Sbjct: 77 RALVLTPTRELAAQVAESVRDYGQHLPLSSFVIFGGVNINPQKQKLRKGVDILVATPGRL 136
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H+ + ++ LVLDEAD M D GF DIRK L L Q QT+L SA
Sbjct: 137 LDHVSQNTVDLSSVEILVLDEADRMLDMGFIRDIRKVLALLP--------QQKQTLLFSA 188
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK- 197
T + ++KL +S LH ++++ + E + QV+ P K
Sbjct: 189 TFSNEIKKLT-----------SSLLHNPA------LVEVAKENSASELISQVVHPVDKKR 231
Query: 198 -------------GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+V+VF T + + + LN++ I+ HG R + L F
Sbjct: 232 KRELLSFLIGSNDWKQVLVFTRTKHGANKLSEQLNKDGITAAAIHGNKSQGARTKALANF 291
Query: 245 KNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K+ D LV TD+AARGLD+D + HV+ F+ P DY+HR GRT R G++G+ SLV
Sbjct: 292 KSN--DIRVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSEGEAMSLV 349
Query: 304 AKKDVLLADRIEEAIR 319
++ L IE I+
Sbjct: 350 CVDELKLLKGIERLIK 365
>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
Length = 443
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 20/303 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A+VL PTREL+ QV + + F+S ++ GG + PQ+ L +D+VV TPGR
Sbjct: 75 PKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQKLIKGVDVVVATPGR 134
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL-VPLKNRASKPNGQGFQTVLV 136
+L H++ ++ I+ LVLDEAD M D GF DIR+ + V K R QT+L
Sbjct: 135 LLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQR---------QTLLF 185
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL E + ++ + + + + ++L +
Sbjct: 186 SATFSNEIKKLASEFLENPQQIQVTPQNTATKLVSQRVYPVDKGRKR-----ELLSQQIG 240
Query: 197 KGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+GN +V++F T + + + L+++ IS+ HG R L +FK+ G L
Sbjct: 241 EGNWQQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKS--GAIRAL 298
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARG+D+D + HV+ ++ P + DY+HR GRTAR G +G SLV ++ L
Sbjct: 299 VATDIAARGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLLRD 358
Query: 314 IEE 316
IE+
Sbjct: 359 IEK 361
>gi|293332577|ref|NP_001169296.1| uncharacterized protein LOC100383160 [Zea mays]
gi|224028479|gb|ACN33315.1| unknown [Zea mays]
gi|414884306|tpg|DAA60320.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 508
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 163/316 (51%), Gaps = 29/316 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR +VL PTREL++Q+ V +S + GG + PQ +L + +D+V+GTPGR
Sbjct: 164 PRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQISALKSGVDIVIGTPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G ++ ++VLDEAD M D GF P++R L ++ S Q V+ S
Sbjct: 224 MKDLIEMGVCCLNEVSFVVLDEADRMLDLGFEPEVRAIL----SQTSSVR----QMVMFS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS----ARHDFIKL------SGSENKLEAL 187
AT AV KL E + + + I S A HD +++ +++L AL
Sbjct: 276 ATWPLAVHKLAQE------FMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLAL 329
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L + S N+V+VF + V+ L V+ HG+ +R + L+ FK
Sbjct: 330 LDKYHQAQS--NRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFK-- 385
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+G CP ++ TD+A+RGLD+ DV+ VI + +PL + DY+HR GRT R G KG + +
Sbjct: 386 EGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQA 445
Query: 307 DVLLADRIEEAIRKNE 322
+ LA + +R+ +
Sbjct: 446 NKALAGELVNVLREAD 461
>gi|402773718|ref|YP_006593255.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401775738|emb|CCJ08604.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 514
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 152/310 (49%), Gaps = 16/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + R ++ GG QE + D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVEASFAKYGKNHRLNVALLIGGVAFGEQETKIMRGADVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L + G ++ I+ LV+DEAD M D GF PDI + LVP
Sbjct: 129 TPGRLLDFFDRGKLLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTR---------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM + +L + S + R + G +K E L ++
Sbjct: 179 QTLFFSATMPPEITRLTEAFLHNPIRCEVSRAATTATTIRQALVASRGHADKRETLRTLI 238
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + N + +FCN + L ++ S HG++ R+ +L+ FK GD
Sbjct: 239 REAENFKNAI-IFCNRKRDVATLHRSLVKHGFSAGALHGDMDQLARMASLDAFKT--GDV 295
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
+VC+D+AARGLD+ DV HV+ FD P +S DY+HR GRT R G G +LV + D+
Sbjct: 296 SLIVCSDVAARGLDIPDVSHVLNFDVPTHSEDYVHRIGRTGRAGRSGVAITLVTEDDMKY 355
Query: 311 ADRIEEAIRK 320
D+I+ I K
Sbjct: 356 IDQIQSLIGK 365
>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 552
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 200 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 259
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 260 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 311
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + + SA H +++ K + +++ LE
Sbjct: 312 ATWPKDVRQLASDFLSDYIQVNVGSTD---LSANHRITQIVEVVADFEKRDKMIKHLEKI 368
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + NK ++F T + + FL ++ ++ HG+ ER LN+FK G P
Sbjct: 369 MEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQ--GKSPI 426
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
+V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRTAR GAKG +
Sbjct: 427 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITF 476
>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
Length = 432
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 14/292 (4%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+ RA++L PTREL+EQ+ K+ + H T V GGG+ Q L D++V TPG
Sbjct: 74 KARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQKLRKGTDIIVATPG 133
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L+H+ GN+ +++LVLDEAD M D GF DI+K + + + QT++
Sbjct: 134 RLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLI--------QACNKERQTLMF 185
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + V+KL DE + L T+ H A+ + K E L +++
Sbjct: 186 SATFSGGVRKLADEIMKKHTVL-TADRHNTAATTVSQVVYPVEQRRKRELLSELI--GRK 242
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+V+VF T + LN + I + H E R L F +G LV
Sbjct: 243 NWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFT--EGKIRVLVS 300
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
T++AARGLD+ D+++V+ FD P DY+HR GRT R G G S V++++
Sbjct: 301 TEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREE 352
>gi|424778096|ref|ZP_18205049.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887089|gb|EKU29499.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 414
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 159/303 (52%), Gaps = 18/303 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL++QV S RST+V GG + PQ+++L +++V+ TPGR+
Sbjct: 46 RALVLTPTRELADQVAESIALYSKSVPLRSTVVFGGVDIGPQKEALRRGVEIVIATPGRL 105
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L HI+ + + LVLDEAD M D GF PD+ + L+P KNR Q +L
Sbjct: 106 LDHIDQRTINLSQVSILVLDEADRMLDMGFLPDLDRIVSLLP-KNR---------QGLLF 155
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT +K ++KL + + + ++ +S E K A+ +++
Sbjct: 156 SATFSKEIRKLARNFLNDPVEIEVAARNATASTVTQVVYPMSADE-KRRAVAHLIK--TK 212
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K + +VF NT + + +L I + HG ER++ L+ FK+ G LV
Sbjct: 213 KLTQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKVLDAFKS--GSVDVLVA 270
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ + VI D P N+ DY+HR GRT R GA G+ +L+A + L IE
Sbjct: 271 TDVAARGLDVAGMPCVINVDLPYNAEDYVHRIGRTGRAGASGEAIALMAPDEEHLLQEIE 330
Query: 316 EAI 318
+ I
Sbjct: 331 KLI 333
>gi|335421073|ref|ZP_08552102.1| DEAD/DEAH box helicase domain-containing protein [Salinisphaera
shabanensis E1L3A]
gi|334893104|gb|EGM31326.1| DEAD/DEAH box helicase domain-containing protein [Salinisphaera
shabanensis E1L3A]
Length = 438
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 157/303 (51%), Gaps = 12/303 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA++L PTREL++Q+++ A ++ + + GG Q ++ + +D+++GTPG
Sbjct: 98 QPRALILAPTRELADQIYKDALPLASGTGLKCVVCYGGTGYEEQRQAIVDGVDILIGTPG 157
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ + + I+ VLDEAD MFD GF DIR + P + Q +L
Sbjct: 158 RLIDYYKQKVYTLKAIEVAVLDEADRMFDLGFIDDIRYMFRKM------PVPENRQNLLF 211
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ V +L E +RT T I + +S ++KL L+ L +
Sbjct: 212 SATLSHRVLELAYEHMNSPTLVRTDTETVNIGAITQKLYHVS-KDDKLALLIGTLR-RID 269
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G + ++F NT ++ ++ LN N + G+V +R+ L FK G+ P +V
Sbjct: 270 NG-RTLIFINTKRTAEFIEDGLNANGFTAATLSGDVAQNKRLRLLEDFKT--GELPIMVA 326
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + DV HVI +D P ++ DY+HR GRTAR G G S ++ V IE
Sbjct: 327 TDVAARGLHIPDVTHVINYDLPQDAQDYVHRIGRTARAGNTGDAISFACEEYVYSLPDIE 386
Query: 316 EAI 318
I
Sbjct: 387 AYI 389
>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
Length = 515
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 21/315 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
P A+VL PTREL++Q+ R K+ S + R+++V GG + Q L N +++VV TP
Sbjct: 187 PMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHDLRNGVEVVVATP 246
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR + H++ GN G I Y+VLDEAD M D GF P I++ + L + QT+L
Sbjct: 247 GRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPK--------HQTLL 298
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM K +++L ++ + A+ ++ + KL+ L+ ++ +
Sbjct: 299 FSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQR-LEHAPEPQKLDILVALISAEV 357
Query: 196 SKGNK-------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+ +VF V L E+ I+ HG + ER L F
Sbjct: 358 AAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRDFAK-- 415
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
GD LV TD+A+RGLD+ + HVI D P DY+HR GRT R G KG+ TSL +D
Sbjct: 416 GDIKVLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRATSLWNDRD 475
Query: 308 VLLADRIEEAIRKNE 322
L +I++A+ + E
Sbjct: 476 SYLVAQIKQALSELE 490
>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
Length = 437
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 12/305 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ R A+ + + R + GG PQ L +D+++GTPGR
Sbjct: 83 PWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQGVDIIIGTPGR 142
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
I+ + +I+ +VLDEAD MFD GF D+R L + + N +L S
Sbjct: 143 IIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRIN------MLFS 196
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT+++ V++L E + R ++ S +K+ LL VL
Sbjct: 197 ATLSERVKELAYEHMNAPETIAIEPEQVTAEKVRQSLYHVA-SADKIGLLLGVLRQ--QD 253
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+ +VF NT + V +L N G++P ++R + L +F ++G P LV T
Sbjct: 254 ATRTLVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRF--QEGKLPMLVAT 311
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGL + DV ++ +D P N+ DY+HR GRTAR GA G S + V IE
Sbjct: 312 DVAARGLHIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAISFACEAYVYSLPEIEA 371
Query: 317 AIRKN 321
I +
Sbjct: 372 YIHQK 376
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 159/291 (54%), Gaps = 16/291 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R +VL PTREL+EQ+ + S + +++ GG + Q+ L D+V+ TPGR+
Sbjct: 82 RMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMRGADIVIATPGRL 141
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L HIE + +++LVLDEAD M D GF PD+ + L L K+R Q++L S
Sbjct: 142 LDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPKSR---------QSLLYS 192
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT ++ ++ L + + ++ + ++ + + +S S+ K AL+ +L +
Sbjct: 193 ATFSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESD-KNAALVYIL--TSRA 249
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
N V++F N + + ++ LN ++ + HG+ ER + L+ FK+ C LV T
Sbjct: 250 FNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKS--SKCNILVAT 307
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
D+AARGLD+ DVD VI ++ P S DY+HR GRT R G KG SL + ++
Sbjct: 308 DVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEE 358
>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
Length = 776
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + R+T + GG PQ L +++ + TPGR
Sbjct: 201 PIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGVEICIATPGR 260
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 261 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 312
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL + + + +L SA H+ +++ E KL LLQ +
Sbjct: 313 ATWPKEVRKLAQDFLRNYVQINIGSLQ---LSANHNILQIVDVCQEHEKETKLNNLLQEI 369
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ G K+++F T ++ + V HG+ QER L +F+N G
Sbjct: 370 GNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRN--GKS 427
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+AARGLD++ + +VI +D+P +S DY+HR GRT R G
Sbjct: 428 SILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTG 474
>gi|385301732|gb|EIF45901.1| rna helicase [Dekkera bruxellensis AWRI1499]
Length = 537
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 151/290 (52%), Gaps = 12/290 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + H +R R+T V GG PQ +L+ +++ + TPGR
Sbjct: 182 PIVLILAPTRELAVQIQQECGKFGHTSRIRNTCVYGGVPRGPQIRALSRGVEICIATPGR 241
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L +E + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 242 LLDMLEGRKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 293
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K+VQ L + + + +L + ++ K E L+ ++
Sbjct: 294 ATWPKSVQSLARDYLKDYIQVNIGSLELSASHTIKQIXEVCSDFEKREKCCNYLKQEMAD 353
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +KV+VF +T + + +L E ++ HG+ +ER LN+F+ G P +V
Sbjct: 354 EKSKVIVFASTKRTCDELTTYLREEGWPALSIHGDKEQRERDWVLNEFRT--GKSPIMVA 411
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
TD+AARG+D+ DV VI +D P N DY+HR GRT R GAKG + +
Sbjct: 412 TDVAARGIDVKDVTAVINYDMPGNVEDYVHRIGRTGRAGAKGTAVTFFTR 461
>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 455
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 24/317 (7%)
Query: 8 MLGVLMKPRR----PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
M+ ++ RR PR+++L PTREL+ QV + + + ++ GG ++ Q +
Sbjct: 59 MIDIMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKA 118
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
LN +D+++ TPGR++ E G ++ + LV+DEAD M D GF PDI L +
Sbjct: 119 LNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQR 178
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
QT+L SATM ++KL + + I R +T +K I + R + G
Sbjct: 179 --------QTMLFSATMPPPIEKLSKQFMSNPKRIETTRAATTNKDITAFRVNV----GQ 226
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
K E L +LE + +VF N + R ++ L + HG++ +R
Sbjct: 227 RQKRETLEWLLENDHVE--TAIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAE 284
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L +FK DG+ LV +D+AARGLD+ V HV FD P + DY+HR GRT R GAKG+
Sbjct: 285 LQRFK--DGEINILVASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRA 342
Query: 300 TSLVAKKDVLLADRIEE 316
+ VA +D D +E+
Sbjct: 343 FTFVAPEDAEAIDNVEK 359
>gi|352081054|ref|ZP_08951932.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351683095|gb|EHA66179.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 619
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 164/309 (53%), Gaps = 15/309 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+P +P+A+VL PTREL+ QV ++ + H F+ + GG PQ SL + +VV
Sbjct: 78 RPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 137
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGR++ H++ G + ++K+LVLDEAD M GF D+ K L +A+ P G Q
Sbjct: 138 GTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVL-----QATPP---GRQ 189
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
L SATM ++K+ + + + A+ + +SG +KL+AL ++LE
Sbjct: 190 VALFSATMPAPIRKIAQRHLKEPVEVTIKSSTTTAANIHQRYWFVSGM-HKLDALTRILE 248
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ +++F T ++ + L ++ +G++ +R + + K DG
Sbjct: 249 --AEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLK--DGKLD 304
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD++ + HV+ +D P ++ Y+HR GRT R G G+ V+ ++ +
Sbjct: 305 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML 364
Query: 312 DRIEEAIRK 320
IE A R+
Sbjct: 365 HAIERATRQ 373
>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase [Methylotenera mobilis JLW8]
gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
Length = 459
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 24/309 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV K+ + H + RS +V GG ++ Q L ++++V TPGR+
Sbjct: 88 RALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQTPHLKTGVEVLVATPGRL 147
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
L HIE + ++ LVLDEAD M D GF PD+++ L L K R Q ++ S
Sbjct: 148 LDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPKQR---------QNLMFS 198
Query: 138 ATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + ++KL D+ + Q I R++ + + + +K L+Q+L +
Sbjct: 199 ATFSNEIKKLADDFLTKPQLIEVARSNATNDNVTQKVYQV----AQSDKEALLIQLLREA 254
Query: 195 LSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+K +V+VF T L +SR + E I+ HG+ QER++ L+ FK G
Sbjct: 255 DAK--QVIVFTKTKLTASRLSRSLVREG-IAADAIHGDKNQQERIKALDAFKA--GTVSA 309
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+AARGLD+ ++ VI ++ P DY+HR GRT R GA G S V+ +
Sbjct: 310 LIATDVAARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEKYLV 369
Query: 313 RIEEAIRKN 321
IE+ I++
Sbjct: 370 EIEKLIKRQ 378
>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 510
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 162/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ +L + +D+VV TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 139 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR--------QNLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 191 TFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDR----DKKRELLTHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 245 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 303 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 362
Query: 315 EEAIRK 320
E+ I++
Sbjct: 363 EKLIKR 368
>gi|423716940|ref|ZP_17691130.1| hypothetical protein MEG_00670 [Bartonella tamiae Th307]
gi|395429014|gb|EJF95089.1| hypothetical protein MEG_00670 [Bartonella tamiae Th307]
Length = 483
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 150/308 (48%), Gaps = 18/308 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + R ++ GG QE L D+++
Sbjct: 81 RARMPRTLILEPTRELAAQVEENFDKYGKNHRINVALLIGGVSFEEQERKLERGADVLIA 140
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI K L+P
Sbjct: 141 TPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIEKICKLIPFTR---------- 190
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE--NKLEALLQ 189
QT+ SATM + KL D+ + + + +K SGS+ +K L
Sbjct: 191 QTLFFSATMAPEITKLTDQFLHAPTRIEVAKASSTAKTITQKNVK-SGSKPWDKRAVLRD 249
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ ++FCN + L ++ S HG++ + R+ L+ FK DG
Sbjct: 250 LINTEGDDLKNAIIFCNRKKDISELFRSLIKHNFSAGALHGDMDQRSRMTMLSNFK--DG 307
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV +D+AARGLD+ DV HV +D P ++ DY+HR GRT R G GK ++V K D
Sbjct: 308 KLKLLVASDVAARGLDIPDVSHVFNYDVPTHAEDYVHRIGRTGRAGRLGKAFTIVTKSDQ 367
Query: 309 LLADRIEE 316
D IE+
Sbjct: 368 KYIDAIEK 375
>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
Length = 522
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 151/292 (51%), Gaps = 13/292 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ R ++ ++ + + GG Q L +D+V+ TPGR
Sbjct: 99 PIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQGVDVVIATPGR 158
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLVLDEAD M D GF IRK L + +P+ QT++ S
Sbjct: 159 LIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQI-----RPDR---QTLMFS 210
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVLEPSLS 196
AT K VQ L + C+ H+ + R + ++ K+ L++ L+ L+
Sbjct: 211 ATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLD-CLT 269
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +KV++F T ++ LN+ + HG+ ++R +NKFK+ G+C L+
Sbjct: 270 QKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKS--GECRILIA 327
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
TD+A+RGLD+ DV HV +DFP DY+H GRT R GA G S + +D
Sbjct: 328 TDVASRGLDVKDVSHVFNYDFPKVMEDYVHSIGRTGRAGAYGCAVSFLTFED 379
>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 473
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 29/317 (9%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R P RA+VL PTREL+ QV A S S H R+ +V GG ++ Q L N +++++ T
Sbjct: 102 RHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEILIAT 161
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQ 132
PGR+L HI ++ LVLDEAD M D GF PD+++ L+P + Q
Sbjct: 162 PGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIPAQR----------Q 211
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTS-TLHKKIASARHDFIK----LSGSENKLEAL 187
T+L SAT + ++KL ++LRT T+ +A D +K + S +K A+
Sbjct: 212 TLLFSATFSPEIKKLAQ------SYLRTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAI 265
Query: 188 LQVLEPSLSKG--NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
++VLE G + ++F N+ + L + I HG+ ER L+ FK
Sbjct: 266 VKVLEARTRLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFK 325
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ G LV TD+AARGLD+ D+ VI + P N+ D++HR GRT R G+KG +LV
Sbjct: 326 S--GAIEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVD 383
Query: 305 KKDVLLADRIEEAIRKN 321
+ L D IE+ +++
Sbjct: 384 ASEKRLLDDIEKLMKRK 400
>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
Length = 512
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 149/287 (51%), Gaps = 13/287 (4%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+AV++ PTREL+ Q+F A+ + + + +V GG + Q + + +++ TPG
Sbjct: 166 KPQAVIVSPTRELAIQIFSEARKFAFESYLKINIVYGGTSFKHQNECITKGCHVLIATPG 225
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L ++ + + D +++VLDEAD M D GF +RKF+ R QT++
Sbjct: 226 RLLDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFMTHPTMRPEH------QTLMF 279
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + +Q+L E + + + + ++ NK +++E
Sbjct: 280 SATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEV----NKFAKRSKLMEILRE 335
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ + +VF T + + FL+E + T + HG+ +R + L FKN G ++
Sbjct: 336 QADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKN--GSMKVIIA 393
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
T +AARGLD+ +++HV+ FD P N DY+HR GRT R+G G+ TS
Sbjct: 394 TSVAARGLDIKNINHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSF 440
>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 449
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 166/315 (52%), Gaps = 31/315 (9%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+RP RA+VL PTREL+ QV ++ S + S ++ GG + PQ L + +D++V T
Sbjct: 76 QRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINPQIKLLKHGVDILVAT 135
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQT 133
PGR+L H++ G + ++ LVLDEAD M D GF DIR+ L L KNR Q
Sbjct: 136 PGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPKNR---------QN 186
Query: 134 VLVSATMTKAVQKLVDEECQGIAHL----RTST---LHKKIASARHDFIKLSGSENKLEA 186
+L SAT + ++ L D A + R ST + +KI D K
Sbjct: 187 LLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRD--------KKHPM 238
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L +++ + ++V+VF T + + + L ++ IS + HG R L++FK
Sbjct: 239 LAHLIK--TNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFK- 295
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
DG LV TD+AARG+D+D + HV+ +D P DY+HR GRT R GA G+ SLV
Sbjct: 296 -DGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCV 354
Query: 306 KDVLLADRIEEAIRK 320
++ + IE+ I++
Sbjct: 355 DELDMLKDIEKLIKR 369
>gi|410926900|ref|XP_003976906.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Takifugu
rubripes]
Length = 632
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 18/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 169 PICLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 228
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 229 LIDFLECGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---RQTLMWS 280
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K + L+++LE
Sbjct: 281 ATWPKEVRQLAEDFLKDYVQINIGALQ---LSANHNILQIVDVCSDMEKEDKLIRLLEEI 337
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK ++F T + + + + HG+ QER LN+F+ G P
Sbjct: 338 MSEKENKTIIFVETKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRY--GKAPI 395
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ A
Sbjct: 396 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAG 455
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 456 DLISVLRE 463
>gi|393777345|ref|ZP_10365637.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
gi|392715686|gb|EIZ03268.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
Length = 516
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 161/309 (52%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PRA+VL PTREL+ QV + + RS ++ GG + PQ D L +D+VV TP
Sbjct: 75 RLPRALVLTPTRELAAQVEESVRDYGKYLPLRSMVMFGGVGINPQVDLLRKGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H + +I+ LVLDEAD M D GF DIRK L L Q Q +L
Sbjct: 135 GRLLDHAGQRTIDLSNIEILVLDEADRMLDMGFIHDIRKVLALLP--------QKRQNLL 186
Query: 136 VSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D ++ I R +T + +A + + E K E L +++
Sbjct: 187 FSATFSDEIRALADKLLDQPVSIEVARRNTTAETVAQRIYPVDR----ERKRELLAHLVK 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
++V+VF T + + + L+++ I + HG R L++FK G
Sbjct: 243 --THDWHQVLVFTRTKHGANRLAEQLSKDGIPALAIHGNKSQSARTRALSEFKG--GTLR 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ FD P S DY+HR GRT R GA+G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNFDLPNVSEDYVHRIGRTGRAGAEGEAISLVCIDEHGLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 167/310 (53%), Gaps = 27/310 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+VL PTREL+ Q+ K +S +++ + V GG + Q + + +D+VVG
Sbjct: 71 KKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSGVDIVVG 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L HI + G I +L+LDEAD M + GF DI + + + QT
Sbjct: 131 TPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIM--------ESTSEEKQT 182
Query: 134 VLVSATMTKAVQKL----VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+L SATM + ++KL + ++ + IA L+ S KIA ++ + +++KLEAL +
Sbjct: 183 MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIA---QNYFAVK-NKDKLEALCR 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKN 246
+++ + ++FC T R VD + Q N HG++ +R+ L KFK
Sbjct: 239 IIDS--EEPESAIIFCRT---KRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKK 293
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
LV TD+AARG+D++ + HVI +D P ++ Y+HR GRT R +G SLV
Sbjct: 294 --ATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTP 351
Query: 306 KDVLLADRIE 315
++V +IE
Sbjct: 352 REVSSIRQIE 361
>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
diazotrophicus PAl 5]
Length = 483
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 159/317 (50%), Gaps = 20/317 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV + + + ++ GG + Q+D LN
Sbjct: 43 EILSGSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLN 102
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF---LVPLKNR 122
+D+++ TPGR++ E G ++ + LV+DEAD M D GF PDI K L P++
Sbjct: 103 RGVDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVR-- 160
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+ SATM +++L D Q + T + +A+ + + +
Sbjct: 161 ---------QTLFFSATMAPEIRRLADMFLQNPKEI-TVSRPSSVATTIETGLVVVDEAD 210
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K L ++L + +VFCN + L ++ S HG++P R L
Sbjct: 211 KRRVLRRMLRDDAVQ--NAIVFCNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLE 268
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+FK+ G+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G G S
Sbjct: 269 RFKS--GELKILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYS 326
Query: 302 LVAKKDVLLADRIEEAI 318
L D LA+ IE I
Sbjct: 327 LATPYDRALAEAIETLI 343
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 166/315 (52%), Gaps = 19/315 (6%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R +VL PTREL+ Q+ +++ + ++ GG + Q L +
Sbjct: 100 LLASPQRLHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHI 159
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
V+ TPGR++ H+E+ +K+LV+DEAD + + F ++ K L +P + R
Sbjct: 160 VIATPGRLIDHLENTKGFTLRALKFLVMDEADRILNMDFETEVDKILKVIPRERR----- 214
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
T L SATMTK VQKL + ST + + + +I + S+ K L
Sbjct: 215 -----TFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYIFIP-SKYKDCYL 268
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+ +L GN ++FC+T N+++ V L I+ ++ HG++ +R+ LNKFK++
Sbjct: 269 VSILNDL--AGNSFIIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALNKFKSK 326
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
L+ TD+A+RGLD+ VD VI +D P +S DY+HR GRTAR G GK + V +
Sbjct: 327 SRS--VLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQY 384
Query: 307 DVLLADRIEEAIRKN 321
DV L RIE I K
Sbjct: 385 DVELFQRIESLIGKK 399
>gi|416935643|ref|ZP_11934003.1| ATP-dependent RNA helicase RhlE, partial [Burkholderia sp. TJI49]
gi|325525138|gb|EGD03018.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. TJI49]
Length = 333
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 156/302 (51%), Gaps = 20/302 (6%)
Query: 23 LCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI 82
L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+L H+
Sbjct: 1 LTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHM 60
Query: 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142
+ + D+ LVLDEAD M D GF DI++ L L R Q +L SAT +
Sbjct: 61 QQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRR--------QNLLFSATFSD 112
Query: 143 AVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGN 199
++ L D A + R +T + +A H + + K E L ++
Sbjct: 113 EIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDR----DRKRELLTHLIRE--HNWF 166
Query: 200 KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259
+V+VF T + + + L ++ IS + HG R L++FK+ LV TD+
Sbjct: 167 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKS--STLQVLVATDI 224
Query: 260 AARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAI 318
AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L IE I
Sbjct: 225 AARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 284
Query: 319 RK 320
++
Sbjct: 285 KR 286
>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 152/306 (49%), Gaps = 16/306 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VLCPTREL++QV VA S+ H + RST + GG PQ L +++ + TPGR
Sbjct: 132 PIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATPGR 191
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E YLVLDEAD M D GF P IR + + +P+ QT++ S
Sbjct: 192 LIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQI-----RPDR---QTLMWS 243
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K VQ L + H+ +L + + K LL++LE +
Sbjct: 244 ATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHKLLKLLEEIMGE 303
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK ++F T + + L + + HG+ ER L++F+ G P LV
Sbjct: 304 KENKTLIFTETKRRADELTRKLRSDGWPAMCIHGDKAQPERDWVLSEFRK--GHAPILVA 361
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV----AKKDVLLA 311
TD+A+RGLD+ D+ VI FDFP + DY+HR GRTAR G + AK+ L
Sbjct: 362 TDVASRGLDISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFTVNNAKQAKELV 421
Query: 312 DRIEEA 317
++EA
Sbjct: 422 SVLQEA 427
>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 551
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 153/287 (53%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 210 PIVLVLAPTRELAVQIKQEIDKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 269
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 270 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTLMWS 321
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + Q + ++ +++ K + +++ LE + +
Sbjct: 322 ATWPKEVRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIKHLEKVMEN 381
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER L++FK+ P +V
Sbjct: 382 KENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKS--AKSPIMVA 439
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 440 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 486
>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
gi|423388260|ref|ZP_17365486.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG1X1-3]
gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
gi|401643448|gb|EJS61145.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG1X1-3]
Length = 481
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 157/310 (50%), Gaps = 28/310 (9%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ V G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE--PS 194
SAT+ + V+KL + H+ K A D I+ + E + E L +L+ +
Sbjct: 184 SATLPEDVEKLSRKYMDSPTHIEI-----KAAGITTDKIEHTLFETREEEKLSLLKDVTT 238
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDG 249
+ + ++FC T + VDH Q+ VNY HG + ++R E ++ F+ G
Sbjct: 239 IENPDSCIIFCRTQEN---VDHVF--KQLDRVNYPCDKIHGGMVQEDRFEVMDDFRK--G 291
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G KGK + + +
Sbjct: 292 KFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEN 351
Query: 309 LLADRIEEAI 318
+ IEE I
Sbjct: 352 RFLEEIEEYI 361
>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
400]
gi|122300890|sp|Q088J2.1|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase RhlB
gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 434
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 12/306 (3%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K PRA+++ PTREL+ Q+ + AK ++ H + +V GG Q L+ +D+++G
Sbjct: 81 KATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIG 140
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
T GRI+ ++ G + I+ +VLDEAD MFD GF DIR + + S+ N
Sbjct: 141 TTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLN------ 194
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ VQ+L + + L K + + + S E+K+ LL ++E
Sbjct: 195 MLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPS-MEDKMRLLLSLIEE 253
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+K +VF NT +S + +L + G+VP ++R+ L +F + G+
Sbjct: 254 DWP--DKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTS--GEIDV 309
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGL + DV HV +D P + DY+HR GRT R G KG S ++ L
Sbjct: 310 LVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNLP 369
Query: 313 RIEEAI 318
IE I
Sbjct: 370 EIETYI 375
>gi|365858292|ref|ZP_09398238.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
gi|363714432|gb|EHL97942.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
Length = 457
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 26/307 (8%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARF---RSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
RA++L PTREL+ Q+ +I + RF S ++ GG RPQ ++L +D++V TP
Sbjct: 77 RALILSPTRELASQIH---DNIRGYGRFLGLTSAVIFGGVGARPQVEALRRGVDILVATP 133
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF-LVPLKNRASKPNGQGFQTV 134
GR+ H++ G ++ LVLDEAD M DRGF P +++ V KNR QT+
Sbjct: 134 GRLQDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSKNR---------QTL 184
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS--ENKLEALLQVLE 192
SATM + K+ E + A + + + I + S N L LL+ E
Sbjct: 185 FFSATMPAEIAKIAGEMLKDPAKVSVTPVSSTAERVEQRLIHIDASLKRNLLSELLR--E 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
P + + +VF T + + V LN + I HG+ +R L +F+ G P
Sbjct: 243 PGI---GRALVFARTKHGADRVAKHLNADGIPAHAIHGDRSQGQRERALAEFRT--GRAP 297
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+A+RG+D+D V HV FD P Y+HR GRTAR GA G+ + A ++
Sbjct: 298 ILVATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDELAKL 357
Query: 312 DRIEEAI 318
+E+ I
Sbjct: 358 KAVEKLI 364
>gi|209886522|ref|YP_002290379.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|337739955|ref|YP_004631683.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|386028973|ref|YP_005949748.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM4]
gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
carboxidovorans OM5]
gi|336094041|gb|AEI01867.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM4]
gi|336097619|gb|AEI05442.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
Length = 512
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 158/312 (50%), Gaps = 18/312 (5%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
V +P+ R +VL PTRELS Q+ + H R +T+ GG + Q +L +++
Sbjct: 69 VRPQPKTCRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQVRALMGGVEV 128
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+V TPGR+L ++ + G +++LVLDEAD M D GF DIRK + L +R
Sbjct: 129 LVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPHRR------- 181
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+ SATM K + L + + A + + + + I+L S K L ++
Sbjct: 182 -QTLFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRIIQLD-SSAKPATLSEL 239
Query: 191 L--EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
L EP N+ +VF T + + V L + I HG R L F+N
Sbjct: 240 LKSEPV----NRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRN-- 293
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
GD TLV TD+AARG+D+D + HV+ FD P Y+HR GRTAR GA+G SLVA ++
Sbjct: 294 GDIRTLVATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEE 353
Query: 308 VLLADRIEEAIR 319
IE IR
Sbjct: 354 NAYLRDIERLIR 365
>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 502
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 15/302 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
PR +VL PTREL+ QV + A + H A R + GG Q +L P+D+++ TPG
Sbjct: 82 PRVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGVPYPAQLAALRKPLDILIATPG 141
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H+ G V GD++ L+LDEAD M D GF DI + L Q QTV+V
Sbjct: 142 RLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERIAESLP--------QERQTVMV 193
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHK-KIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT V +L D+ + A T H + + E+K + L +L +
Sbjct: 194 SATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADSIEHKAKLLEHLL--TE 251
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ + +VF +T + + L E + HG +P R L +N G+ L+
Sbjct: 252 REMQQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMALRN--GEIKVLI 309
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+ + HVI F P+ + DY+HR GRT R G G+ +L ++DV + RI
Sbjct: 310 ATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLAERRDVGMIRRI 369
Query: 315 EE 316
++
Sbjct: 370 QQ 371
>gi|407846946|gb|EKG02877.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 631
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 152/296 (51%), Gaps = 8/296 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+V+ PTRELS Q+ + ++ R +V GG R Q L+ ++V TPGR
Sbjct: 210 PAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGR 269
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G + + I+++VLDEAD M D GF P IR +V + P GQ QT+L S
Sbjct: 270 LWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIR-MIVQGQESDMPPPGQR-QTLLYS 327
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L E L+ + + D ++ +K E LL++L ++
Sbjct: 328 ATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRILHE--NQ 384
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
++VF + ++ FL N+++ + HG+ +ER E L FK+ C LV T
Sbjct: 385 NQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKS--ASCQVLVAT 442
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
D+A+RGLD+ DV VI +D P N DY+HR GRT R G G+ S +K+ + D
Sbjct: 443 DVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVD 498
>gi|395786167|ref|ZP_10465894.1| hypothetical protein ME5_01212 [Bartonella tamiae Th239]
gi|395422465|gb|EJF88661.1| hypothetical protein ME5_01212 [Bartonella tamiae Th239]
Length = 472
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 150/308 (48%), Gaps = 18/308 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + R ++ GG QE L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVEENFDKYGKNHRINVALLIGGVSFEEQERKLERGADVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI K L+P
Sbjct: 130 TPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIEKICKLIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE--NKLEALLQ 189
QT+ SATM + KL D+ + + + +K SGS+ +K L
Sbjct: 180 QTLFFSATMAPEITKLTDQFLHAPTRIEVAKASSTAKTITQKNVK-SGSKPWDKRAVLRD 238
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ ++FCN + L ++ S HG++ + R+ L+ FK DG
Sbjct: 239 LINTEGDDLKNAIIFCNRKKDISELFRSLIKHNFSAGALHGDMDQRSRMTMLSNFK--DG 296
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV +D+AARGLD+ DV HV +D P ++ DY+HR GRT R G GK ++V K D
Sbjct: 297 KLKLLVASDVAARGLDIPDVSHVFNYDVPTHAEDYVHRIGRTGRAGRLGKAFTIVTKSDQ 356
Query: 309 LLADRIEE 316
D IE+
Sbjct: 357 KYIDAIEK 364
>gi|397676010|ref|YP_006517548.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395396699|gb|AFN56026.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 506
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 21/304 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + +++ GG + Q+ +L +D+++ TP
Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L E G ++ + LV+DEAD M D GF PDI L P + QT+L
Sbjct: 145 GRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKL------PTSR--QTLL 196
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM A++KL D + S I++S +K + L +L
Sbjct: 197 FSATMPPAIKKLADRFLSNPKQIEISRPATANTQINQRLIEVS-PRSKKKKLCDMLR--A 253
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + ++FCN + R + L + S HG++ ER L +FKN G LV
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKN--GQISVLV 311
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
+D+AARGLD+ + HV FD P + DY+HR GRT R GA G+ + V D
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD------- 364
Query: 315 EEAI 318
EEAI
Sbjct: 365 EEAI 368
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 153/296 (51%), Gaps = 16/296 (5%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
G +P RA++L PTREL+ Q+ A S H R RS++V GG ++ PQ +L D
Sbjct: 66 GSRTRPNHIRALILTPTRELAAQIHENAVVYSRHLRLRSSVVFGGVKINPQMMNLRKGTD 125
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNG 128
++V TPGR+L + + + ++ LVLDEAD M D GF DI+K L L KNR
Sbjct: 126 ILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNR------ 179
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALL 188
Q +L SAT + ++ L + + T A +I + + K L
Sbjct: 180 ---QNLLFSATFSDEIRDLAKGLVNNPVEI-SVTPANSTARTVEQWIYPADKKKKPAMLA 235
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
++++ K +V+VF T + + + HFLN+ I+ HG R + L FK+
Sbjct: 236 KLIKDGDWK--QVLVFTRTKHGANKLSHFLNDEGITAAPIHGNKSQSARTKALADFKS-- 291
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
GD LV TD+AARG+D+ + V+ F+ P + DY+HR GRT R G GK SLV
Sbjct: 292 GDVRVLVATDIAARGIDIPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAVSLV 347
>gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
Length = 459
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 169/316 (53%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H++ G + ++ LVLDEAD M D GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLDKGRINLEELNTLVLDEADRMLDMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT K ++++ + ++ + H + +H F K+ G+E +
Sbjct: 176 PKQR----QTLLFSATFPKKIEQIAQRIMRSPEMIKVESTHDTSSIVQH-FYKVEGTEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT + V L+ S + HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
Length = 449
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 157/320 (49%), Gaps = 19/320 (5%)
Query: 8 MLGVLMKPRRP-----RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED 62
ML L RP RA+VL PTREL+ QV A+ S H R RS +V GG ++ PQ
Sbjct: 73 MLETLSHGARPGRGQIRALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQ 132
Query: 63 SLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNR 122
L +D++V TPGR+L + G + + +++LVLDEAD M D GF DIR+ L L R
Sbjct: 133 RLQQGVDLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPER 192
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
Q +L SAT + +++KL ++ T + A + +
Sbjct: 193 R--------QNLLFSATFSPSIRKLATGLLNDPLQIQI-TPPNQTARTVQQVVHPCDMKR 243
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K + L ++ + +V+VF T + + V L + HG R L
Sbjct: 244 KPDLLSHLIRS--NDWQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQ 301
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FK DG LV TD+AARG+D+ + HV+ D P + DY+HR GRT R G G S
Sbjct: 302 GFK--DGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAIS 359
Query: 302 LVAKKDVLLADRIEEAIRKN 321
LVA ++ LL IE R++
Sbjct: 360 LVAAEEALLLKAIERTTRES 379
>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase [Jannaschia sp. CCS1]
gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
Length = 644
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 158/314 (50%), Gaps = 21/314 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR++VLCPTREL+ QV + H + ++ GG + QE +++ +D+++ TP
Sbjct: 81 RMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKGVDVLIATP 140
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L H E G ++ D+K +V+DEAD M D GF PDI + LVP QT
Sbjct: 141 GRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTR----------QT 190
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ--VL 191
+ SATM ++++ + + A+ I+ +A ++ +L
Sbjct: 191 LFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDML 250
Query: 192 EPSLS-KGN---KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+++ +G+ ++FCN V L ++ ++ HG++ R+ L F+
Sbjct: 251 RAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFR-- 308
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
DG LV +D+AARGLD+ +V HVI +D P ++ DY+HR GRT R G G +L
Sbjct: 309 DGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPS 368
Query: 307 DVLLADRIEEAIRK 320
D IE I++
Sbjct: 369 DEKYLGAIEGLIKQ 382
>gi|424048065|ref|ZP_17785621.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
gi|408883375|gb|EKM22162.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
Length = 459
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGF----QDVLDAIIEAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F + GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQY-FYNVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT + V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 152/305 (49%), Gaps = 14/305 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R P+A++L PTREL+ QV R V GG + Q +L + +VVGTP
Sbjct: 68 RVPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQLRALEQGVQVVVGTP 127
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GRI+ H+ G +V I +VLDEAD M D GF DI L + Q QT L
Sbjct: 128 GRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFIL--------QQTPQQRQTAL 179
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM +AVQ LV + + + R + ++ E KL+AL ++L+ +
Sbjct: 180 FSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPRE-KLDALCRILD--V 236
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ ++FC T + + A+ L + HG++ +R + +F+ +G LV
Sbjct: 237 ETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFR--EGQAELLV 294
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ DV HVI +D P + Y+HR GRT R G G +L+ ++ + I
Sbjct: 295 ATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQII 354
Query: 315 EEAIR 319
E A R
Sbjct: 355 ERASR 359
>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
Length = 670
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 154/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ ++ R +V GG + +++ GTP
Sbjct: 309 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCGTP 368
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YL+LDEAD M D GF PD+RK L P + QT++
Sbjct: 369 GRLLDIIGRGKVGLSKLRYLILDEADRMLDMGFEPDMRK----LVGSPGMPAKEDRQTLM 424
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + L + + I++ +K E LL++L+ +
Sbjct: 425 FSATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQVD-QYSKREQLLELLKTT 483
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ + MVF T S+ + FL + +IST + HG+ +ER + L+ F+ G CP L
Sbjct: 484 GTE--RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRT--GQCPVL 539
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD++ V HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 540 VATSVAARGLDIEHVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSF 588
>gi|407407635|gb|EKF31366.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 634
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 152/296 (51%), Gaps = 8/296 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+V+ PTRELS Q+ + ++ R +V GG R Q L+ ++V TPGR
Sbjct: 210 PAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGR 269
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G + + I+++VLDEAD M D GF P IR +V + P GQ QT+L S
Sbjct: 270 LWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIR-MIVQGQESDMPPPGQR-QTLLYS 327
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L E L+ + + D ++ +K E LL++L ++
Sbjct: 328 ATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRLLHE--NQ 384
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
++VF + ++ FL N+I+ + HG+ +ER E L FK+ C LV T
Sbjct: 385 NQLILVFVEKKRDADYLERFLRNNRIACASIHGDRVQREREEALKMFKS--ASCQVLVAT 442
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
D+A+RGLD+ DV VI +D P N DY+HR GRT R G G+ S +K+ + D
Sbjct: 443 DVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVD 498
>gi|347760106|ref|YP_004867667.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579076|dbj|BAK83297.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 568
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 158/315 (50%), Gaps = 20/315 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV + H + ++ GG + Q++ LN
Sbjct: 155 EILQGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLN 214
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNR 122
+D+++ TPGR++ E G ++ K LV+DEAD M D GF PDI K L PL+
Sbjct: 215 RGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLR-- 272
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+ SATM +++L D + + T + +AS + + ++
Sbjct: 273 ---------QTLFFSATMAPEIRRLADAFLRNPKEI-TVSRPSSVASTIETGLAIVDGKD 322
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K AL ++L S +VFCN + L ++ S HG++ R L
Sbjct: 323 KRRALRKLLRE--SDMQNAIVFCNRKRDVDVLCKSLLKHGFSVGALHGDLAQSVRFSTLE 380
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FK+ G+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G G S
Sbjct: 381 AFKS--GELKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYS 438
Query: 302 LVAKKDVLLADRIEE 316
L + LA IE+
Sbjct: 439 LATPDEEALAQAIEK 453
>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
Length = 605
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 20/310 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ VA + R+T + GG Q L +++V+ TPGR
Sbjct: 195 PIALVLAPTRELAQQIQSVANDFGSSSSVRNTCIFGGSPRTKQASDLQRGVEIVIATPGR 254
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L ++ G YLVLDEAD M D GF P IRK + +P+ QT++ S
Sbjct: 255 LLDFLQAGTTNLRRCTYLVLDEADRMMDMGFEPQIRKIFGQI-----RPDR---QTLMWS 306
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD---FIKLSGSEN---KLEALLQVL 191
AT K V++L ++ H+ ++ SA H+ ++++ KL+ LL +
Sbjct: 307 ATWPKEVRQLAEDFLGNYIHINIGSME---LSANHNIRQYVEVCAEHEKGAKLKDLLSHI 363
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ K+++F T + F+N +S + HG+ +R LN F++ G
Sbjct: 364 YDQAAMPGKIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRS--GRA 421
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+D + +VI FDFP +S DY+HR GRT R + G + +K+
Sbjct: 422 NILVATDVAARGLDIDGIKYVINFDFPQSSEDYIHRIGRTGRNRSTGTSYAFFTRKNAKC 481
Query: 311 ADRIEEAIRK 320
A + E +R+
Sbjct: 482 ARALIEVLRE 491
>gi|358397215|gb|EHK46590.1| hypothetical protein TRIATDRAFT_291734 [Trichoderma atroviride IMI
206040]
Length = 549
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 215 PIVLILAPTRELAVQIQQEISKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 274
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 275 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 326
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + Q + ++ +++ K + +++ LE + +
Sbjct: 327 ATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHLEKVMEN 386
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER L++FK G P +V
Sbjct: 387 KENKILIFVGTKRIADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVA 444
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R G G +L
Sbjct: 445 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGQNGTAITL 491
>gi|343428869|emb|CBQ72414.1| probable DEAD box protein (putative RNA helicase) [Sporisorium
reilianum SRZ2]
Length = 568
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 160/304 (52%), Gaps = 21/304 (6%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
A VL PTREL+ Q+ + +++ RS + GG + Q +L+ ++V TPGR+
Sbjct: 192 ACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQ 251
Query: 80 QHIED--GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
H+E+ G + G ++YLV+DEAD + D FGP I K L +P + R T+L
Sbjct: 252 DHLENTKGFSLRG-LQYLVMDEADRLLDMDFGPIIDKLLQSIPRERR----------TML 300
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATMT V KL + + T + +++ + ++ + + + E +
Sbjct: 301 FSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLANEQA- 359
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G+ ++VF T++ S+ + L + HG++ Q R+ LNKFK G LV
Sbjct: 360 --GHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKT--GGRSILV 415
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+A+RGLD+ VD V+ +D P NS DY+HR GRTAR G G+ +LV + DV L RI
Sbjct: 416 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 475
Query: 315 EEAI 318
E I
Sbjct: 476 EAVI 479
>gi|410471840|ref|YP_006895121.1| ATP-dependent RNA helicase [Bordetella parapertussis Bpp5]
gi|408441950|emb|CCJ48450.1| putative ATP-dependent RNA helicase [Bordetella parapertussis Bpp5]
Length = 421
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 39 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 98
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 99 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 148
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 149 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 201
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 202 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 256
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 257 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 316
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 317 RYLLD-IEKLIKRQ 329
>gi|420238250|ref|ZP_14742670.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
gi|398087778|gb|EJL78357.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
Length = 517
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 21/311 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L D+++
Sbjct: 70 RARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFDDQDRKLERGADVLIC 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + ++P
Sbjct: 130 TPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK---LEALL 188
QT+ SATM +QKL D Q + + K ++A+ +L S NK A+L
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERIEVA---KPSSTAKTVTQRLVASHNKDYEKRAVL 236
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+ L + ++FCN + L + S HG++ + R L F+ D
Sbjct: 237 RDLIKAQDDLKNAIIFCNRKVDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFR--D 294
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G+ LV +D+AARGLDL DV HV FD P+++ DY+HR GRT R G G+ +LV + D
Sbjct: 295 GNIQLLVASDVAARGLDLPDVGHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTRSD 354
Query: 308 VLLADRIEEAI 318
D IE+ I
Sbjct: 355 TKYLDAIEKLI 365
>gi|410421448|ref|YP_006901897.1| ATP-dependent RNA helicase [Bordetella bronchiseptica MO149]
gi|408448743|emb|CCJ60428.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
MO149]
Length = 421
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 39 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 98
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 99 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 148
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 149 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 201
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 202 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 256
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 257 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 316
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 317 RYLLD-IEKLIKRQ 329
>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
Length = 483
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 150/287 (52%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L +++ + TPGR
Sbjct: 135 PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLARGVEVCIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 195 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTCMWS 246
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K V++L + + + ++ +++ K + + + LE +S
Sbjct: 247 ATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLETIMSD 306
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G P +V
Sbjct: 307 KDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPIMVA 364
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R GA G +L
Sbjct: 365 TDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITL 411
>gi|242043730|ref|XP_002459736.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
gi|241923113|gb|EER96257.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
Length = 512
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 160/316 (50%), Gaps = 29/316 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR +VL PTREL++Q+ V +S + GG + PQ +L + +D+V+GTPGR
Sbjct: 168 PRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQISALKSGVDIVIGTPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G ++ ++VLDEAD M D GF P++R L Q V+ S
Sbjct: 228 MKDLIEMGVCRLNEVSFVVLDEADRMLDMGFEPEVRAIL--------SQTSSVRQMVMFS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS----ARHDFIKL------SGSENKLEAL 187
AT AV KL E + + + I S A HD +++ +++L AL
Sbjct: 280 ATWPLAVHKLAQE------FMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLAL 333
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L + S N+V+VF + V+ L V+ HG+ +R + L+ FK
Sbjct: 334 LDKYHQAQS--NRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFK-- 389
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+G CP ++ TD+A+RGLD+ DV+ VI + +PL + DY+HR GRT R G KG + +
Sbjct: 390 EGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQA 449
Query: 307 DVLLADRIEEAIRKNE 322
+ LA + +R+ +
Sbjct: 450 NKALAGELVNVLREAD 465
>gi|392548564|ref|ZP_10295701.1| ATP-dependent RNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 407
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 163/310 (52%), Gaps = 15/310 (4%)
Query: 8 MLGVLMKPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
M +L++P RA++L PTREL++QV + A + + H ++ + GG + PQE +L
Sbjct: 60 MTQLLIQPGSGVRALILAPTRELAQQVAQHANTYAAHCELKTVCLHGGANIGPQEKALRE 119
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+VV TPGR+L H+ G + ++YLV DEAD M D GF +IR+ + R P
Sbjct: 120 GADIVVATPGRLLDHLIKGTLNLSAVEYLVFDEADRMLDMGFMGEIRRIM-----RKMPP 174
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
+ QT+L SAT+ +AV V + + + ++ A F + E K E
Sbjct: 175 D---RQTLLFSATVDEAVFNQVKDWLKEPKRIGIEAQNQAAAKVEQIFYAVD-EERKREL 230
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
+ ++ ++V++F T + LN++ + T HG+ R + L +FK
Sbjct: 231 IAHLI--GKQNWHQVLIFTRTKKQADDYAKELNKDGLKTQAIHGDKSQGARNKALAQFK- 287
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
DG+ LV TD+AARG+D+ +++VI + P + DY+HR GRT R G G SLV+
Sbjct: 288 -DGEIRVLVATDVAARGIDIQQLNYVINAELPYVAEDYVHRIGRTGRAGEAGTAISLVSI 346
Query: 306 KDVLLADRIE 315
+ L + IE
Sbjct: 347 DEQWLLEEIE 356
>gi|390941064|ref|YP_006404801.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194171|gb|AFL69226.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 417
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 160/316 (50%), Gaps = 23/316 (7%)
Query: 14 KPR---RP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPI 68
KPR +P R ++L PTREL+ QV ++ + F+S ++ GG + PQ +L N +
Sbjct: 66 KPRNKAKPALRVLILTPTRELAAQVGESVQTYGKYLPFKSAVIFGGVGIHPQIQTLKNGV 125
Query: 69 DMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128
D++V TPGR+L H+ G + +I VLDEAD M D GF DIRK + L ++
Sbjct: 126 DILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKR----- 180
Query: 129 QGFQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
Q +L SAT + ++KL + + + + ++ + R + L
Sbjct: 181 ---QNLLFSATYSDEIKKLCESILKNPAVVEVARRNTSSELVNQRVIIVDCKRKTALLGK 237
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L+Q K +V+VF T + + V +LN+ IS+ HG R + L FK
Sbjct: 238 LIQE-----QKWEQVLVFTRTKHHANKVSEYLNKIGISSSAIHGNKSQGARTKALADFKG 292
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
G LV TD+AARGLD+D + HV+ + P + DY+HR GRT R G G+ SLV
Sbjct: 293 --GSIKVLVATDIAARGLDIDQLPHVVNLELPNIAEDYVHRIGRTGRAGNNGEAISLVCV 350
Query: 306 KDVLLADRIEEAIRKN 321
+ IE+ I+++
Sbjct: 351 DEFEYLKGIEKLIKRS 366
>gi|451996737|gb|EMD89203.1| hypothetical protein COCHEDRAFT_1141168 [Cochliobolus
heterostrophus C5]
Length = 539
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 152/292 (52%), Gaps = 12/292 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L +++ + TPGR
Sbjct: 191 PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLARGVEVCIATPGR 250
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 251 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTCMWS 302
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K V++L + + + ++ +++ K + + + LE +S
Sbjct: 303 ATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLETIMSD 362
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G P +V
Sbjct: 363 KENKILIFTGTKRVADEITRFLRQDGWPALSIHGDKAQNERDWVLNEFKT--GKSPIMVA 420
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R GA G +L ++
Sbjct: 421 TDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTEN 472
>gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217]
gi|123166515|sp|Q12S35.1|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase RhlB
gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 432
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 161/303 (53%), Gaps = 12/303 (3%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+PRA+++ PTREL+ Q+ + A ++ H + +V GG Q + L+ +D+++GT G
Sbjct: 84 QPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREVLDKGVDILIGTTG 143
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ ++ G + I+ +VLDEAD MFD GF DIR + + +S+ N +L
Sbjct: 144 RIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDASSRLN------MLF 197
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT++ VQ+L + + + K + + + S +E+K+ LL ++E
Sbjct: 198 SATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPS-TEDKMRLLLTLMEEDWP 256
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ K +VF NT +S + +L + G+VP ++R+ L +F + GD LV
Sbjct: 257 E--KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTS--GDLDVLVA 312
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGL + DV HV +D P + DY+HR GRT R G KG S + L IE
Sbjct: 313 TDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACETYALNLPAIE 372
Query: 316 EAI 318
+ I
Sbjct: 373 QYI 375
>gi|33602957|ref|NP_890517.1| ATP-dependent RNA helicase [Bordetella bronchiseptica RB50]
gi|427815972|ref|ZP_18983036.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
1289]
gi|33568588|emb|CAE34346.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
RB50]
gi|410566972|emb|CCN24542.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
1289]
Length = 423
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 39 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 98
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 99 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 148
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 149 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 201
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 202 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 256
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 257 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 316
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 317 RYLLD-IEKLIKRQ 329
>gi|367037389|ref|XP_003649075.1| hypothetical protein THITE_2107255 [Thielavia terrestris NRRL 8126]
gi|346996336|gb|AEO62739.1| hypothetical protein THITE_2107255 [Thielavia terrestris NRRL 8126]
Length = 666
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 16/294 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL Q++ A+ ++ + R +V GG + Q + D++V TPGR
Sbjct: 272 PTALILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 331
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +IKYLVLDEAD M D GF P IR+ ++ P GQ QT++ S
Sbjct: 332 LVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRI---VQGEDMPPTGQ-RQTLMFS 387
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT + +Q L + L R + + I I+ +K LL +L
Sbjct: 388 ATFPRDIQMLAQDFLSDYVFLSVGRVGSTSENITQK----IEYVEDIDKRSVLLDILH-- 441
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
G ++F T + ++ FL + HG+ +ER L F+N G CP L
Sbjct: 442 THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRN--GKCPIL 499
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
V T +AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ + +
Sbjct: 500 VATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGN 553
>gi|412341699|ref|YP_006970454.1| ATP-dependent RNA helicase [Bordetella bronchiseptica 253]
gi|408771533|emb|CCJ56334.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica 253]
Length = 421
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 39 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 98
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 99 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 148
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 149 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 201
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 202 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 256
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 257 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 316
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 317 RYLLD-IEKLIKRQ 329
>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
Length = 705
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 161/310 (51%), Gaps = 22/310 (7%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
L + + P+A+V+ PTREL Q+F A+ ++ + R + GG + Q L ++
Sbjct: 316 TLSEKQTPQAIVVGPTRELVLQIFLEARKFAYGSVIRPVVAYGGTSVGSQLRDLCRGCNI 375
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
++ TPGR+L I G + ++YL+LDEAD M D GF P+IR+ L P+
Sbjct: 376 LIATPGRLLDFINRGKVSCECVEYLILDEADRMLDMGFEPEIRRLL----GSPGMPDKNS 431
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH---KKIASARHDFIKL---SGSENKL 184
T++ SAT +QKL E LR L ++ A D + E+K
Sbjct: 432 RHTLMFSATFPNEIQKLAHE------FLRDDFLFLSVGRVGGACSDVTQTILQVDEEDKR 485
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
E L+Q+L ++ +VF T + + FL++ + T + HG+ +ER L F
Sbjct: 486 ETLMQLLSDVAETRSRTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADF 545
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSID-YLHRTGRTARMGAKGKVTSL 302
K+ G CP ++ T +AARGLD+ V+HVI FD P N ID ++HR GRT R G G+ TS
Sbjct: 546 KS--GTCPIMIATSVAARGLDIPKVEHVINFDLP-NEIDEFVHRVGRTGRCGNLGQATSF 602
Query: 303 VA-KKDVLLA 311
+ KD +LA
Sbjct: 603 YSDNKDGMLA 612
>gi|431928590|ref|YP_007241624.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826877|gb|AGA87994.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 441
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 156/294 (53%), Gaps = 20/294 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + + R+ V GG + PQ +L ID++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRKGIDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T ++A++++ E + + S + + + + + + K E L +L + +
Sbjct: 188 TFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVD-KKRKSELFLHLL--AEKRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + VD ++E Q IS+ HG+ P R+ L +FK G+ LV
Sbjct: 245 GQVLVFVKT---RKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKA--GEVQVLV 299
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
TD+AARGLD+ D+ V+ FD P+ + DY+HR GRT R GA G+ SLV+ +V
Sbjct: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEV 353
>gi|313213750|emb|CBY40630.1| unnamed protein product [Oikopleura dioica]
Length = 416
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 16/298 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+++ A ++ ++ R ++ GG + Q L+ ++V TPGR
Sbjct: 39 PLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDLSRGCHLLVATPGR 98
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E G + ++L LDEAD M D GF P IR+ + + P+ + QT++ S
Sbjct: 99 LADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRII----EKVIFPSDR--QTLMFS 152
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K +Q L + + L + A+ F + +E K+ L ++LE
Sbjct: 153 ATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRFEYVQETE-KVRKLCELLE----N 207
Query: 198 GNKVM--VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G +++ VF T + +DHFL+E + HG+ QER E ++ FK+ G P LV
Sbjct: 208 GQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKS--GQTPILV 265
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
T +AARGLD+ +V HVI FD P +Y+HR GRT R G G T+ +K+ ++D
Sbjct: 266 ATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEKNAKISD 323
>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 517
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 164/316 (51%), Gaps = 19/316 (6%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L KP+ ++L PTREL+ Q+ + ++ + + GG + PQ +L+ +
Sbjct: 149 LLEKPQPLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHI 208
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
VV TPGR+L H+E+ +KY+VLDEAD + D FGP + K L L +
Sbjct: 209 VVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPR-------E 261
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA---RHDFIKLSGSENKLEA 186
G T L SATM+ V+ L Q + S+ ++ S R+ FI + K
Sbjct: 262 GRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIP---HKYKDLY 318
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L+ +L ++ G+ ++F T+N ++ + L + HG++ R+ LNKFK+
Sbjct: 319 LVHLLNDNI--GHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKS 376
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
+ D LV TD+AARGLD+ VD ++ FD P +S Y+HR GRTAR G GK S V +
Sbjct: 377 KSRDI--LVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQ 434
Query: 306 KDVLLADRIEEAIRKN 321
D+ + RIE A+ K
Sbjct: 435 YDLEIWLRIEHALGKK 450
>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
helicase [Cryptosporidium parvum Iowa II]
gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
helicase [Cryptosporidium parvum Iowa II]
Length = 396
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 155/302 (51%), Gaps = 27/302 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P ++L PTREL+EQ +V SI + R+ GG +L+ +LN+ + ++ G
Sbjct: 88 KENVPMVLILSPTRELAEQSEKVCTSIGDYLDIRAHSCIGGKKLKDDIKALNSGVSIISG 147
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGP---DIRKFLVPLKNRASKPNGQG 130
TPGR+LQ IE G + IK L++DEAD MFD GF DI K+L P
Sbjct: 148 TPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPP-----------R 196
Query: 131 FQTVLVSATMTKAV----QKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA 186
QTVLVSAT+ + QK + Q + +L K R +++ + K E
Sbjct: 197 IQTVLVSATLPDDILVMAQKFMRNPLQILVPKEEVSLDK----IRQYHVQVEEEKWKFET 252
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L + + +L+ + +FCNT N + + EN + HG++P R E L +F+
Sbjct: 253 LCDLYD-TLTVTQSI-IFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFR- 309
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
+G L+ TDL RG+D+ V+ V+ +D P+N Y+HR GR+ R G G +L+ K
Sbjct: 310 -EGKTRVLITTDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITK 368
Query: 306 KD 307
+D
Sbjct: 369 ED 370
>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
Length = 396
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 12/289 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+++ PTREL Q++ A+ +H+ R +V GG Q ++ +VVGT
Sbjct: 36 QEPQAIIVGPTRELVTQIYNEARKFAHNTMVRPVVVYGGVTTGYQAREVSKGAHLVVGTA 95
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + +KY +LDEAD M D GF P+ ++ L N P QT++
Sbjct: 96 GRLLDFIRKGYLSLAKVKYFILDEADRMLDMGFLPN----MMALANELGMPAKTERQTLM 151
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT + VQ+L E + + +++ NK E L+ +L
Sbjct: 152 FSATFPEEVQQLAKELLNDYIFVTVGRVGGANTDIEQHVLQVD-QFNKREKLVSILN--- 207
Query: 196 SKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+G + +VF + + +L++++ T + HG+ +ER E L FKN G P L
Sbjct: 208 SQGQQRTLVFVEQKRQADFIASYLSQSEFPTTSIHGDREQREREEALRDFKN--GTAPIL 265
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ V+HVI FD P + +Y+HR GRT R G G+ TS
Sbjct: 266 VATSVAARGLDIPGVNHVINFDMPQSIDEYVHRIGRTGRCGNLGRATSF 314
>gi|440684899|ref|YP_007159694.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428682018|gb|AFZ60784.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 450
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 163/306 (53%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV + + +ST+V GG + PQ+ L + +D++V TPGR+
Sbjct: 80 RALILTPTRELAAQVEESVHDYGKYLKLKSTVVFGGVSINPQKRQLKSGVDILVATPGRL 139
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ G + I+ LVLDEAD M D GF DIR+ L L + Q +L A
Sbjct: 140 LDHLQQGTVNLSRIEILVLDEADRMLDMGFIRDIRRILSILPKQR--------QNLLFFA 191
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + +++L G+ + R + + + D I + + Q+L + +
Sbjct: 192 TFSDKIKEL----ASGLLN-RPTMIEVARRNVTADTIAQRAYQVDRDKKRQLLAHLIRQD 246
Query: 199 N--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
N +V+VF T + + LN+++I + HG R L KFKN G LV
Sbjct: 247 NWYQVLVFTRTKYGADRLVRQLNDDRIQALAIHGNKSQGARTHALAKFKN--GSLQVLVA 304
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-LLADRI 314
TD+AARGLD+ ++ HV+ FD P DY+HR GRT R GAKG+ SLV + LLAD I
Sbjct: 305 TDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGAKGEAVSLVCVDEFHLLAD-I 363
Query: 315 EEAIRK 320
E+ I++
Sbjct: 364 EKLIKQ 369
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 15/310 (4%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM-VSGGGRLRPQEDSLNNPIDMV 71
+KP +P+A+VL PTREL+ QV + + H R + + GG PQ SL + +V
Sbjct: 77 LKPGKPQALVLAPTRELAIQVAEAFQKYATHMRGLQVLPIYGGQSYGPQLHSLKRGVHVV 136
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGR++ H++ G + ++KYLVLDEAD M GF D+ K L +A+ P
Sbjct: 137 VGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVL-----QATPPQ---R 188
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
Q L SATM ++K+ + + + A+ + +SG +KL+AL ++L
Sbjct: 189 QVALFSATMPTVIRKIAQRHLKDPVEVTIKSSTTTAANIHQRYWFVSGM-HKLDALTRIL 247
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E + +++F T ++ + L ++ +G++ +R + + K DG
Sbjct: 248 E--AEPFDAMIIFARTKQATEELAGKLQARGLAAAAINGDIAQPQRERVIQQLK--DGKL 303
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD++ + HV +D P ++ Y+HR GRT R G G+ V+ ++ +
Sbjct: 304 DILVATDVAARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGM 363
Query: 311 ADRIEEAIRK 320
IE A R+
Sbjct: 364 LGAIERATRQ 373
>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
Length = 710
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 15/307 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+F A+ ++ A+ R+ V GG R Q L ++V TPGR
Sbjct: 301 PVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGTDFRSQFRDLQRGCQVLVATPGR 360
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + I++LVLDEAD M D GF P IR+ + + + P QT++ S
Sbjct: 361 LVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRIV----EQDTMPPPGVRQTLMFS 416
Query: 138 ATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT K +Q L + +C I+ R + + I + K + LL ++ +
Sbjct: 417 ATFPKDIQVLARDFLHDCVSISVGRIGSTTENIFQK----VYWVQEHEKRQTLLDLIS-A 471
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+ V+VF T + A++ FL Q + HG+ ++R L F+ DG P L
Sbjct: 472 ASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRERALASFR--DGYTPIL 529
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V T +AARGLD+ +V VI FD P + +Y+HR GRT R+G KG+ S K+ +A
Sbjct: 530 VATAVAARGLDIPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQAISFFNDKNANVARD 589
Query: 314 IEEAIRK 320
+ + +R+
Sbjct: 590 LLDTLRE 596
>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
Length = 487
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 149/292 (51%), Gaps = 22/292 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL++Q+ AK +R R+T V GG PQ + +++++ TPGR
Sbjct: 134 PIALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDIERGVEIMIATPGR 193
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 194 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 245
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V++L +E + +L SA H+ +++ E KL LLQ
Sbjct: 246 ATWPKEVRQLAEEFLTDYIQINVGSL---TLSANHNILQIIDVCQEHEKETKLMTLLQ-- 300
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E NK ++F T ++ + + + HG+ ER LN+F++ G
Sbjct: 301 EIGAEDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRS--GKA 358
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P LV TD+AARGLD+ DV VI FD+P S DY+HR GRT R G +
Sbjct: 359 PILVATDVAARGLDVDDVKFVINFDYPNCSEDYVHRIGRTGRSQRTGTAYTF 410
>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
Length = 402
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 12/289 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+++ PTREL Q++ A+ +H+ R +V GG Q ++ +VVGT
Sbjct: 42 QEPQAIIVGPTRELVTQIYNEARKFAHNTMVRPVVVYGGVTTGYQAREVSKGAHLVVGTA 101
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + +KY +LDEAD M D GF P+ ++ L N P QT++
Sbjct: 102 GRLLDFIRKGYLSLAKVKYFILDEADRMLDMGFLPN----MMALANELGMPAKTERQTLM 157
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT + VQ+L E + + +++ NK E L+ +L
Sbjct: 158 FSATFPEEVQQLAKELLNDYIFVTVGRVGGANTDIEQHVLQVD-QFNKREKLVSILN--- 213
Query: 196 SKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
S+G + +VF + + +L++++ T + HG+ +ER E L FKN G P L
Sbjct: 214 SQGQQRTLVFVEQKRQADFIASYLSQSEFPTTSIHGDREQREREEALRDFKN--GTAPIL 271
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ V+HVI FD P + +Y+HR GRT R G G+ TS
Sbjct: 272 VATSVAARGLDIPGVNHVINFDMPQSIDEYVHRIGRTGRCGNLGRATSF 320
>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
HTCC2654]
gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2654]
Length = 474
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 29/321 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + LVP
Sbjct: 130 TPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIA-------SARHDFIKLSGSE 181
QT+ SATM ++++ + A + R +T + IA ++R D +
Sbjct: 180 QTLFFSATMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRD----RAAT 235
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
K L +++ ++FCN V L + HG++ +R+E L
Sbjct: 236 EKRRLLRALIDREGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETL 295
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ DG LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G KGK
Sbjct: 296 QGFR--DGTLRFLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAV 353
Query: 301 SLVAKKDVLLADRIEEAIRKN 321
+ +D D +E I K
Sbjct: 354 MICEPRDEKNLDAVERLIEKE 374
>gi|441499152|ref|ZP_20981340.1| DEAD/DEAH box helicase-like protein [Fulvivirga imtechensis AK7]
gi|441437120|gb|ELR70476.1| DEAD/DEAH box helicase-like protein [Fulvivirga imtechensis AK7]
Length = 416
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 150/294 (51%), Gaps = 11/294 (3%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P +++ PTREL+ Q+ K ++ AR ST + GG + +L P +
Sbjct: 132 LLANPAHFDTLIITPTRELALQIEDEFKKLTIGARLFSTTLIGGTNMNKSLAALARPSHI 191
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
++GTPGRI+ + G + + + LVLDE D M D GF DI + + + R
Sbjct: 192 IIGTPGRIMDMAQRGKLPFKNFPLLVLDEFDRMLDMGFIRDIERIISQMTARK------- 244
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+L SATM A + ++++ ++ +T K ++ D + +S ENK ++L+++
Sbjct: 245 -QTLLFSATMPAAQEGIINKIVPTSVRVKATTALKSSSNIHQDVVSVSEGENKFDSLVRI 303
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L ++V++FC T + + LN I HG Q R + L +FK DG
Sbjct: 304 LSNENIHDSRVILFCETKRRANKLSKQLNTAGIRADEIHGNKSQQAREKALKRFK--DGK 361
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
LV TD+ ARG+D+ DV VI ++ P DY+HR GRT R G GK + +
Sbjct: 362 ITVLVATDVMARGIDVTDVSMVINYEIPKTYDDYIHRIGRTGRAGKAGKAVTFI 415
>gi|427825510|ref|ZP_18992572.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
Bbr77]
gi|410590775|emb|CCN05868.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
Bbr77]
Length = 421
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 39 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 98
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 99 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 148
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 149 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 201
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 202 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 256
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 257 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 316
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 317 RYLLD-IEKLIKRQ 329
>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
Length = 537
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 163/316 (51%), Gaps = 20/316 (6%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L + P A+VL PTREL++Q+ VA A R+T V GG Q L ++++
Sbjct: 171 LQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQASDLKRGVEII 230
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
+ TPGR+L ++ G YLVLDEAD M D GF P IRK L + +P+
Sbjct: 231 IATPGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQI-----RPDR--- 282
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD---FIKLSGSEN---KLE 185
Q ++ SAT K V++L ++ + +L SA H+ ++++ G KL+
Sbjct: 283 QILMWSATWPKEVRQLAEDFLGSYIQINIGSLE---LSANHNIRQYVEVCGEHEKSAKLK 339
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
LL + K+++F T + + F+N +S + HG+ +R LN F+
Sbjct: 340 DLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFR 399
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ G LV TD+AARGLD+D + +VI FD+P +S DY+HR GRT R +KG +
Sbjct: 400 S--GRANILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRKLSKGTSYAFFT 457
Query: 305 KKDVLLADRIEEAIRK 320
+K+ A + + +R+
Sbjct: 458 RKNARCARALIDILRE 473
>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
Length = 544
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 156/308 (50%), Gaps = 13/308 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P PRA++L PTREL+ Q++ A + R ++ GG Q + L D+V+ T
Sbjct: 83 PEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIAT 142
Query: 75 PGRILQHIEDGNMVYGDI-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
PGR++ +++ +V + + VLDEAD MFD GF DIR L L R S+ QT
Sbjct: 143 PGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSR------QT 196
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ V +L E L T R I E K+ LL +L
Sbjct: 197 LLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQR-IYFPAEEEKIPLLLGLL-- 253
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S S+G + MVF NT V L+E G+VP ++R LN+F+ G
Sbjct: 254 SRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK--GQLEI 311
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGL +D V++V +D P ++ DY+HR GRTAR+GA G S ++ +
Sbjct: 312 LVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLP 371
Query: 313 RIEEAIRK 320
IE I +
Sbjct: 372 DIEAYIEQ 379
>gi|396081911|gb|AFN83525.1| DEAD box RNA helicase-like protein [Encephalitozoon romaleae
SJ-2008]
Length = 493
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 151/284 (53%), Gaps = 13/284 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL Q+ +VA RST V GG +PQ +L+ ++V+ TPGR
Sbjct: 161 PIVLVLAPTRELVMQIKKVADEFCEMFDLRSTAVYGGASSQPQIRALHEGAEVVIATPGR 220
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ E G+ G + +LVLDEAD M D GF P +RK ++P N PN QT++ S
Sbjct: 221 LIDLHEQGHAPLGRVTFLVLDEADRMLDMGFEPQLRK-IIPKTN----PN---RQTLMWS 272
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K V+ L + + K S I++ +K + LL VL+ K
Sbjct: 273 ATWPKEVRGLAESYMNDYIQVVIGNEELKTNSKIKQVIEVCNGRDKEDKLLGVLDK--FK 330
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G++++VFCN + +++ LN + HG+ R + L+ F++ G P L+ T
Sbjct: 331 GDRIIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRS--GRRPILIAT 388
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
++A RGLD+ D+ VI FDFP + DY+HR GRTAR K ++
Sbjct: 389 EVAGRGLDVNDIKLVINFDFPGSCEDYVHRIGRTARGNTKEGIS 432
>gi|443735051|gb|ELU18906.1| hypothetical protein CAPTEDRAFT_180220 [Capitella teleta]
Length = 651
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 154/296 (52%), Gaps = 26/296 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P AVV+ PTREL Q A+ S+ + +S +V GG ++ Q + + ++VVGTP
Sbjct: 277 QEPLAVVIGPTRELVSQTQGEARKFSYDSMIKSVVVYGGTSVQYQLRQVESGCNVVVGTP 336
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L + G + +K+L+LDEAD M D GF DI + + P + QT++
Sbjct: 337 GRLLDFVGKGKISLKKVKHLILDEADRMLDMGFKGDIERLVTQF----GMPPKEERQTLM 392
Query: 136 VSATMTKAVQKLVDE--------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
SAT + +Q+L E + T + A+HD ++KLE +
Sbjct: 393 FSATFPEPIQQLAQEFLNDYLFITVGRVGGANTDIEQRIFEVAQHD------KKSKLEEI 446
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L + S ++ +VF + + +L++++ T + HG+ +ER E L FK+
Sbjct: 447 L-----NESGADRTLVFVEKKRQADYLASYLSQSEFPTTSIHGDRQQREREEALRDFKS- 500
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
G CP LV T +AARGLD+ V HVI FDFP + +Y+HR GRT R G GK +S
Sbjct: 501 -GKCPILVATSVAARGLDIPGVKHVINFDFPSDIDEYVHRIGRTGRCGNMGKASSF 555
>gi|421598599|ref|ZP_16041987.1| dead-box ATP-dependent RNA helicase, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404269295|gb|EJZ33587.1| dead-box ATP-dependent RNA helicase, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 359
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 151/296 (51%), Gaps = 22/296 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+ R +VL PTRELS Q+ + H R ST+ GG + Q SL ++++V
Sbjct: 72 QPKTARVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVLVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L ++ + G +++LVLDEAD M D GF DIRK + +P+K
Sbjct: 132 TPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKR---------- 181
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL--SGSENKLEALLQ 189
QT+ SATM K + +L D + A + + + I++ S + L LL+
Sbjct: 182 QTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTAERINQRIIQVDFSAKPSFLARLLK 241
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
EP N+ +VF T + + V L + I HG R L F++ G
Sbjct: 242 E-EPV----NRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRERTLGLFRS--G 294
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+ TLV TD+AARG+D+D + HVI FD P Y+HR GRTAR GA G SLVA
Sbjct: 295 EIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGADGTAISLVA 350
>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 493
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 150/284 (52%), Gaps = 13/284 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL Q+ +VA RST V GG +PQ +L+ +++V+ TPGR
Sbjct: 161 PIALVLAPTRELVMQIKKVADEFCGMFGLRSTAVYGGASSQPQIKALHEGVEIVIATPGR 220
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ E G+ + +LVLDEAD M D GF P +RK ++P K NG QT++ S
Sbjct: 221 LIDLHEQGHAPLSRVTFLVLDEADRMLDMGFEPQLRK-IIP------KTNGN-RQTLMWS 272
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + V+ L + + K S I++ K + LL VL+ K
Sbjct: 273 ATWPREVRGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKEDKLLGVLDK--FK 330
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G+KV+VFCN + +++ LN + HG+ R + L+ F++ G P L+ T
Sbjct: 331 GDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRS--GRRPILIAT 388
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
++A RGLD+ DV VI FDFP DY+HR GRTAR K ++
Sbjct: 389 EVAGRGLDVNDVKLVINFDFPGTCEDYVHRIGRTARGNTKEGIS 432
>gi|372272242|ref|ZP_09508290.1| ATP-dependent RNA helicase RhlB, partial [Marinobacterium stanieri
S30]
Length = 599
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 156/306 (50%), Gaps = 14/306 (4%)
Query: 14 KPRR--PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDM 70
+PR+ PRA+++ PTREL+ Q+ A+ +S HA + GG Q +L P+D+
Sbjct: 127 EPRKNEPRALIIAPTRELALQIASDAEGLSAHADLSVVSLVGGMDYERQRKALAAKPVDI 186
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
+V TPGR++ + + ++ LVLDEAD M GF PD+R + R + G
Sbjct: 187 LVATPGRLIDFVRSKEVDLYQVEVLVLDEADRMLSMGFIPDVRTII-----RQTPRKGAD 241
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
QT+L SAT T V +L ++ Q + + HK + +S +E K + L
Sbjct: 242 RQTLLYSATFTDDVMRLAEQWTQDPVTIEIESEHKTTDNVAQKVFLVSSNE-KYQLLRNY 300
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
L ++ + +VF N + +RA+ L+++ I GE+P +R+ L F+N G
Sbjct: 301 LR--INGIERAIVFGNRRHETRALADRLSKDGIKAALMSGEIPQNKRLRTLEDFRN--GK 356
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+A RG+ +D V HVI + P ++ DY+HR GRT R GA G + D
Sbjct: 357 IEVLVATDVAGRGIHIDGVTHVINYQLPEDADDYVHRIGRTGRAGATGTSICFACEDDSF 416
Query: 310 LADRIE 315
L IE
Sbjct: 417 LIPDIE 422
>gi|333985974|ref|YP_004515184.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333810015|gb|AEG02685.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 444
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 156/304 (51%), Gaps = 12/304 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ PRA++L PTREL+ Q+ + A + + + ++ GG + Q D L +D+++GTP
Sbjct: 80 KNPRALILAPTRELAIQIHKDALVLGKYLNLKFALIYGGTDYQKQLDKLKTNVDIIIGTP 139
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GRI+ + G +I+ V+DEAD MFD GF DIR L R P + +L
Sbjct: 140 GRIIDFYKQGAFTLENIQVTVMDEADRMFDLGFIKDIRFLL----RRMPPPEKR--LNLL 193
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT++ V +L E +R + + + A + ++ K+ LL +L+
Sbjct: 194 FSATLSYKVTELAYEHMNNPVLIRIES-EEVTSKAINQIAYCPANDQKIPLLLGLLK--Y 250
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ + +VF NT + +D +L N G+VP ++R LN F ++ L+
Sbjct: 251 HQPQRSIVFVNTKRCAERLDDYLEANGYKVAMLSGDVPQEKRQRLLNDF--QENRVTLLI 308
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGL + DV HV +D P + DY+HR GRTAR GA G+ S + ++ I
Sbjct: 309 ATDVAARGLHIPDVSHVFNYDLPQDVEDYVHRIGRTARFGASGEAISFICEEYAYSMPDI 368
Query: 315 EEAI 318
E+ I
Sbjct: 369 EDYI 372
>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
Length = 530
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 155/296 (52%), Gaps = 10/296 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+ +V+ PTREL+ Q+F A+ S+ + ++ GG +++ Q ++ +++V TPGR
Sbjct: 148 PQCIVVSPTRELAIQIFDEARKFSYKTMIKCVVIYGGTKVQHQTSMVDRGCNVLVATPGR 207
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L I G + +KYLVLDEAD M D GFGPD+ K L N + P T++ S
Sbjct: 208 LLHFINSGMISVEKVKYLVLDEADRMLDMGFGPDMEK----LVNNPAMPKKGERHTLMFS 263
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT VQ+ E L + + R +++ + K + L+++L+ S +
Sbjct: 264 ATFPNEVQERAAEYLDNYLFLTVGRVGGANSDVRQVVVEVPQAAKK-DKLIEILQ-SQPE 321
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
++ +VF T + + +L+++ T + HG+ +ER E LN FK LV T
Sbjct: 322 NDRTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFKRNRAS--VLVAT 379
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLLA 311
+A+RGLD+ V HV+ FD P DY+HR GRT R G G TS +KD ++
Sbjct: 380 SVASRGLDIPAVKHVVNFDLPSEIDDYVHRIGRTGRCGNTGLSTSFYNPEKDATIS 435
>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
Length = 459
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 161/310 (51%), Gaps = 31/310 (10%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHAR----FRSTMVSGGGRLRPQEDSLNNPIDMVV 72
R +++VLCPTREL++QV A I AR + + GG + PQ SL + ++V
Sbjct: 71 RVQSLVLCPTRELADQV---ATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILV 127
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQG 130
GTPGRIL H+ G + ++ LVLDEAD M + GF I + P +
Sbjct: 128 GTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQR--------- 178
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE---NKLEAL 187
QT+L SAT + ++ + + Q ++ + H+K ++ F +L +E N LEAL
Sbjct: 179 -QTLLFSATFPEQIETIASKVMQNPEMVKVESTHQK-STIEQRFYQLENTEERDNALEAL 236
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L P +VFCNT + V LN + S + HG++ +ER L F N+
Sbjct: 237 LLTHRPE-----STVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANK 291
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
LV TD+AARGLD+D +D VI F+ + ++HR GRT R GAKG S ++K
Sbjct: 292 --SISILVATDVAARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEK 349
Query: 307 DVLLADRIEE 316
++ +RIEE
Sbjct: 350 ELYRVERIEE 359
>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
Length = 645
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 152/289 (52%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q + ++V GTP
Sbjct: 284 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCNIVCGTP 343
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 344 GRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 399
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + FI+++ +K E LL +L+
Sbjct: 400 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLLDLLK-- 456
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP +
Sbjct: 457 TTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVM 514
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 515 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 563
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 162/309 (52%), Gaps = 22/309 (7%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+P+A++LCPTREL+ QV +S + R ST + GG + Q SL + +VVGTP
Sbjct: 73 KPQALILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGESIDRQIKSLKRGVQIVVGTP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GRI+ H++ + I +VLDEAD M D GF DI L +S P + QTV
Sbjct: 133 GRIMDHMQRRTLNLSQISIIVLDEADEMLDMGFRDDIETIL------SSMPEER--QTVF 184
Query: 136 VSATMTKAVQKLV---DEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SATM K + L + + LR + I+ A ++ ++E +++++E
Sbjct: 185 FSATMPKPILDLTRKYQNNPEIVKVLRKELTVENISQAYYEV----RPSLRIELMVRLME 240
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
L++ +VFCNT S+ V L I HG++ +R + +NKF+ G C
Sbjct: 241 --LNQFKLSVVFCNTKRSTDEVTESLISKGIMAEALHGDLSQAQRTKVMNKFRK--GTCS 296
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLL 310
LV TD+AARG+D+ DV+ V +D PL+ +Y+HR GRT R G G S V +KD
Sbjct: 297 VLVATDVAARGIDVDDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGMALSFVTGRKDTYR 356
Query: 311 ADRIEEAIR 319
+E+ I+
Sbjct: 357 LRDLEKFIK 365
>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 555
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 159/317 (50%), Gaps = 20/317 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV + + + ++ GG + Q+D LN
Sbjct: 109 EILSGSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLN 168
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF---LVPLKNR 122
+D+++ TPGR++ E G ++ + LV+DEAD M D GF PDI K L P++
Sbjct: 169 RGVDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVR-- 226
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+ SATM +++L D Q + T + +A+ + + +
Sbjct: 227 ---------QTLFFSATMAPEIRRLADMFLQNPKEI-TVSRPSSVATTIETGLVVVDEAD 276
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K L ++L + +VFCN + L ++ S HG++P R L
Sbjct: 277 KRRVLRRMLRDDAVQ--NAIVFCNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLE 334
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
+FK+ G+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G G S
Sbjct: 335 RFKS--GELKILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYS 392
Query: 302 LVAKKDVLLADRIEEAI 318
L D LA+ IE I
Sbjct: 393 LATPYDRALAEAIETLI 409
>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
Length = 506
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 161/321 (50%), Gaps = 29/321 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 104 RARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGVDVLIA 163
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 164 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 213
Query: 132 QTVLVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKI-------ASARHDFIKLSGSE 181
QT+ SATM ++++ + + + R +T + I ++R D GSE
Sbjct: 214 QTLFFSATMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKD---REGSE 270
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
K L ++E K ++FCN V L + HG++ +R + L
Sbjct: 271 -KRRVLRTLIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTL 329
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+ F+ DG LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G GK
Sbjct: 330 DGFR--DGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAI 387
Query: 301 SLVAKKDVLLADRIEEAIRKN 321
++ A +D +E+ ++K
Sbjct: 388 TICAPRDEKALAAVEDLVKKE 408
>gi|443893885|dbj|GAC71341.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 562
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 160/304 (52%), Gaps = 21/304 (6%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
A VL PTREL+ Q+ + +++ RS + GG + Q +L+ ++V TPGR+
Sbjct: 186 ACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQ 245
Query: 80 QHIED--GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
H+E+ G + G ++YLV+DEAD + D FGP I K L +P + R T+L
Sbjct: 246 DHLENTKGFSLRG-LQYLVMDEADRLLDMDFGPIIDKLLQSIPRERR----------TML 294
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATMT V KL + + T + +++ + ++ + + + E +
Sbjct: 295 FSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLANEQA- 353
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G+ ++VF T++ S+ + L + HG++ Q R+ LNKFK G LV
Sbjct: 354 --GHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKT--GGRSILV 409
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+A+RGLD+ VD V+ +D P NS DY+HR GRTAR G G+ +LV + DV L RI
Sbjct: 410 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 469
Query: 315 EEAI 318
E I
Sbjct: 470 EAVI 473
>gi|340520139|gb|EGR50376.1| predicted protein [Trichoderma reesei QM6a]
Length = 547
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 202 PIVLILAPTRELAVQIQQEISKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 261
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 262 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 313
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + Q + ++ +++ K + +++ LE + +
Sbjct: 314 ATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHLEKVMEN 373
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER L++FK G P +V
Sbjct: 374 KENKILIFVGTKRIADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVA 431
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R G G +L
Sbjct: 432 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGQHGTAITL 478
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 166/307 (54%), Gaps = 22/307 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S RS +V GG + PQ+++L +++V TPGR+
Sbjct: 96 RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 155
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 156 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 205
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + K+SG + K A++ +++ S
Sbjct: 206 SATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMSG-DQKRAAVVHLVK---S 261
Query: 197 KGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G K V+VF NT + + L + + + HG+ +R++ L FK G+ LV
Sbjct: 262 RGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKA--GELEVLV 319
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKDVLLADR 313
TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++ L D
Sbjct: 320 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEERFLLD- 378
Query: 314 IEEAIRK 320
IE+ I++
Sbjct: 379 IEKLIKR 385
>gi|389630386|ref|XP_003712846.1| ATP-dependent RNA helicase DBP2 [Magnaporthe oryzae 70-15]
gi|152013478|sp|A4QSS5.1|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
gi|351645178|gb|EHA53039.1| ATP-dependent RNA helicase DBP2 [Magnaporthe oryzae 70-15]
Length = 548
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 22/293 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 199 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 259 LIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTLMWS 310
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL----SGSENK---LEALLQV 190
AT K V+ + + Q + +L SA H ++ S SE + + + +V
Sbjct: 311 ATWPKEVRNMAADFLQDFIQVNIGSLD---LSANHRITQIVEVVSESEKRDRMIRHMEKV 367
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ SK NK+++F T + + FL ++ ++ HG+ ER L++FK G
Sbjct: 368 MDGKDSK-NKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GK 424
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 425 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 477
>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
Length = 459
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M D GF + L + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGF----QDALDAIIEAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F + GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQY-FYNVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT + V L+ S ++ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
Length = 660
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 155/311 (49%), Gaps = 28/311 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++L PTREL+ Q++ A+ S+ AR R +V GG + Q L+ ++V TPGR
Sbjct: 302 PLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGADVVSQMRDLSRGCHLLVATPGR 361
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I+ G + KYLVLDEAD M D GF P IR+ ++ P GQ QT++ S
Sbjct: 362 LADMIDRGKIGLDYCKYLVLDEADRMLDMGFEPQIRRI---VEEDNMPPTGQR-QTLMFS 417
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS--- 194
AT K +Q+L + L + + + +S ++K LL +L +
Sbjct: 418 ATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVS-EDDKRSFLLDILNAAGLD 476
Query: 195 -LSKGNK----------------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
++ NK +VF T + A++ FL + + HG+ +ER
Sbjct: 477 RATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQRER 536
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
+ L F++ G CP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG
Sbjct: 537 EDALRVFRS--GQCPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNL 594
Query: 297 GKVTSLVAKKD 307
G TS K+
Sbjct: 595 GLATSFFNDKN 605
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 164/316 (51%), Gaps = 19/316 (6%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L KP+ ++L PTREL+ Q+ + ++ + + GG + PQ +L+ +
Sbjct: 148 LLEKPQPLFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHI 207
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
VV TPGR+L H+E+ +KY+VLDEAD + D FGP + K L L +
Sbjct: 208 VVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPR-------E 260
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA---RHDFIKLSGSENKLEA 186
G T L SATM+ V+ L Q + S+ ++ S R+ FI + K
Sbjct: 261 GRHTYLFSATMSSKVENLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIP---HKYKDLY 317
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L+ +L ++ G+ ++F T+N ++ + L + HG++ R+ LNKFK+
Sbjct: 318 LIHLLNDNI--GHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKS 375
Query: 247 EDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305
+ D LV TD+AARGLD+ VD ++ FD P +S Y+HR GRTAR G GK S V +
Sbjct: 376 KSRDI--LVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQ 433
Query: 306 KDVLLADRIEEAIRKN 321
D+ + RIE A+ K
Sbjct: 434 YDLEIWLRIEHALGKK 449
>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 547
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 151/290 (52%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L +++ + TPGR
Sbjct: 203 PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGR 262
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 263 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI-----RPD---RQTCMWS 314
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + ++ SA H +++ K E + + LE
Sbjct: 315 ATWPKDVRQLAQDFLHDYIQVNIGSMD---LSANHRITQIVEIVSEFEKRERMAKHLERI 371
Query: 195 LSKGN-KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ N K+++F T + + FL ++ ++ HG+ ER LN+FK G P
Sbjct: 372 MDDKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPI 429
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
+V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +L
Sbjct: 430 MVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITL 479
>gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
Length = 544
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 156/308 (50%), Gaps = 13/308 (4%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P PRA++L PTREL+ Q++ A + R ++ GG Q + L D+V+ T
Sbjct: 83 PEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIAT 142
Query: 75 PGRILQHIEDGNMVYGDI-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
PGR++ +++ +V + + VLDEAD MFD GF DIR L L R S+ QT
Sbjct: 143 PGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSR------QT 196
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+L SAT++ V +L E L T R I E K+ LL +L
Sbjct: 197 LLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQR-IYFPAEEEKIPLLLGLL-- 253
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
S S+G + MVF NT V L+E G+VP ++R LN+F+ G
Sbjct: 254 SRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQK--GQLEI 311
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGL +D V++V +D P ++ DY+HR GRTAR+GA G S ++ +
Sbjct: 312 LVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLP 371
Query: 313 RIEEAIRK 320
IE I +
Sbjct: 372 DIEAYIEQ 379
>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
Length = 408
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 160/314 (50%), Gaps = 29/314 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR +VL PTREL++Q+ V S + GG PQ +L + +D+V+GTPGR
Sbjct: 64 PRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGR 123
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G D+ ++VLDEAD M D GF P++R L QTV+ S
Sbjct: 124 MKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAIL--------SQTASVRQTVMFS 175
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS----ARHDFIKL------SGSENKLEAL 187
AT AV +L E + + + I S A HD +++ +++L AL
Sbjct: 176 ATWPPAVHQLAQE------FMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVAL 229
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L ++ N+V+VF + V+ L S V+ HG+ +R + L+ FK
Sbjct: 230 LDKYHK--AQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFK-- 285
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+G CP ++ TD+A+RGLD+ DV+ VI + +PL + DY+HR GRT R G KG + ++
Sbjct: 286 EGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQE 345
Query: 307 DVLLADRIEEAIRK 320
+ LA + +R+
Sbjct: 346 NKGLAGELVNVLRE 359
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
Length = 549
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 20/287 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL++Q+ +VA + R+T + GG PQ L +++ + TPGR
Sbjct: 187 PIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGVEICIATPGR 246
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 247 LIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPD---RQTLMWS 298
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+KL + + + +L SA H+ +++ E KL LLQ +
Sbjct: 299 ATWPKEVRKLAQDFLRNYVQINIGSLQ---LSANHNILQIVDVCQEHEKETKLNNLLQEI 355
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ G K+++F T ++ + V HG+ QER L +F+N G
Sbjct: 356 GNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRN--GKS 413
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
L+ TD+AARGLD++ + +VI +D+P +S DY+HR GRT R G
Sbjct: 414 SILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTG 460
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 14/301 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+EQV + H R+ + GG + PQ L +D++V TPGR+
Sbjct: 76 RALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDVLVATPGRL 135
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + + ++ LVLDEAD M D GF ++ + L + QT+L SA
Sbjct: 136 LDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKR--------QTLLFSA 187
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + A++ L E + + S + S R + + + K E +L+ ++
Sbjct: 188 TFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVD-KKRKAELFCHLLQ--ANRW 244
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ +VF T S + L I+ + HG+ P R+ L +FK G+ LV TD
Sbjct: 245 RQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKA--GEVDLLVATD 302
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ ++ V+ FD P+ + DY+HR GRT R GA G+ SLV +V L IE
Sbjct: 303 VAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAIETL 362
Query: 318 I 318
I
Sbjct: 363 I 363
>gi|348161390|gb|AEP68013.1| vasa [Sebastes schlegelii]
Length = 649
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ +H R +V GG Q + ++V GTP
Sbjct: 288 QEPEAIIVAPTRELINQIYLEARKFAHGTCVRPVVVYGGVNTGHQIRDILRGCNVVCGTP 347
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 348 GRLLDMIGRGKVGLSKLQYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 403
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L + + L + + F++++ +K E LL L +
Sbjct: 404 FSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFVQVT-KFSKREQLLDFL--N 460
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ MVF T + + +L + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 461 TVGAERTMVFVETKRQADFIATYLCQEKVLTTSIHGDREQREREQALADFRS--GKCPVL 518
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 519 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 567
>gi|393241453|gb|EJD48975.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 531
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ ++R R+T + GG PQ L +++V+ TPGR
Sbjct: 177 PIALVLAPTRELAVQIQTECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 236
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E I YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 237 LIDMLESQKTNLRRITYLVLDEADRMLDMGFEPQIRKIVSQI-----RPD---RQTLMFS 288
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL + + + ++ +++ K L++ LE ++
Sbjct: 289 ATWPKDVQKLAQDFLKDYIQVNIGSMELAANHNIKQIVEVCTDFEKRGKLIKHLEQISNE 348
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L +FK P L+ T
Sbjct: 349 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAS--RSPILIAT 406
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 407 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKG 447
>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
Length = 508
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 159/315 (50%), Gaps = 20/315 (6%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV + H + ++ GG + Q++ LN
Sbjct: 89 EILQGSRARARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLN 148
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNR 122
+D+++ TPGR++ E G ++ K LV+DEAD M D GF PDI K L PL+
Sbjct: 149 RGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLR-- 206
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
QT+ SATM +++L D + + T + +AS + + +++
Sbjct: 207 ---------QTLFFSATMAPEIRRLADAFLRNPKEI-TVSRPSSVASTIETGLAIVDAKD 256
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K AL ++L + +VFCN + L ++ S HG++ R L
Sbjct: 257 KRRALRKLLRE--ADMQNAIVFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLE 314
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
FK+ G+ LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G G S
Sbjct: 315 AFKS--GELKILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYS 372
Query: 302 LVAKKDVLLADRIEE 316
L + LA IE+
Sbjct: 373 LATPDEEALAQAIEK 387
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 95 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 155 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 204
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 205 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 257
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 258 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 312
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 313 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 372
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 373 RYLLD-IEKLIKRQ 385
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus
pulchellus]
Length = 465
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 166/318 (52%), Gaps = 23/318 (7%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P+R A+VL PTREL+ Q+ +++ +S ++ GG + Q +L
Sbjct: 86 ALLETPQRLFALVLTPTRELAFQISEQFEALGASIGVKSAVIVGGIDMMTQALTLAKKPH 145
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
+++ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +P + R
Sbjct: 146 VIIATPGRLVDHLENTKGFNLKSLKYLVMDEADRILNMDFEEEVDKILRVIPRERR---- 201
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS--ARHDFIKLSGSENKL 184
T L SATMTK VQKL + + S+ ++ + + FI + L
Sbjct: 202 ------TYLYSATMTKKVQKLQRASLRDPVKVEVSSKYQTVEKLMQYYLFIPAKFKDVYL 255
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
LL L GN MVFC+T ++++ L + + HG++ +R+ L KF
Sbjct: 256 VHLLNEL-----AGNSFMVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALTKF 310
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K+++ L+ TD+A+RGLD+ VD V+ FD P +S DY+HR GRTAR G GK + V
Sbjct: 311 KSKNRSI--LIATDVASRGLDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 368
Query: 304 AKKDVLLADRIEEAIRKN 321
+ DV L RIE+ I K
Sbjct: 369 TQYDVELYQRIEQLIGKK 386
>gi|359413094|ref|ZP_09205559.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357171978|gb|EHJ00153.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 478
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 158/305 (51%), Gaps = 20/305 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+A++L PTREL+ QV +I R ++ V G + QE L +VVGTPGR
Sbjct: 72 PQALILTPTRELAIQVNEDISNIGRFKRIKAVAVFGKAPISEQERKLKQKTHIVVGTPGR 131
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
IL HI+ G++ IKY V+DEAD M + GF + + +P K T+L
Sbjct: 132 ILDHIDRGSLNVEKIKYFVIDEADEMLNMGFIGQVEGIIRRIPKKK----------VTML 181
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT+ + ++ L ++ + + + H+ + + KLEAL ++L
Sbjct: 182 FSATIPEEIKDLCEKHMSRPVDISIKSQKLITTNIEHNLYYVEYGK-KLEALDKIL--IY 238
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K ++F T + V +LN ST HG + ++R+ + F+ GD LV
Sbjct: 239 EKPETAVIFAKTKENVDKVFEYLNLKGYSTNKIHGGMLQKDRLNTMENFRR--GDFRLLV 296
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKDVLLADR 313
TDLA+RG+D++ + HVI FD P+ Y+HR GRT R GAKGK SL + KD LL+D
Sbjct: 297 ATDLASRGIDIEGITHVINFDLPVEKEAYVHRIGRTGRAGAKGKAISLCIEGKDRLLSD- 355
Query: 314 IEEAI 318
IEE I
Sbjct: 356 IEEFI 360
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 159/305 (52%), Gaps = 19/305 (6%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
A+VL PTREL+ Q+ + S+ R+ ++ GG + Q +L+ ++V TPGR++
Sbjct: 109 ALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLM 168
Query: 80 QHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVLV 136
H+E+ +KYLV+DEAD + D FGP I K L +P K R T L
Sbjct: 169 DHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIP-KER---------NTYLF 218
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATMT V KL + S+ + + S L +NK +A L L LS
Sbjct: 219 SATMTTKVAKLQRASLNKPVRVEVSSKYSTV-STLLQHYLLLPLKNK-DAYLLYLANELS 276
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ +M+F T+ S+ + L + HG++ R+ +LNKFK+ G LV
Sbjct: 277 SSS-MMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKS--GGRSILVA 333
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+A+RGLD+ VD VI +D P NS DY+HR GRTAR G GK +LV + DV + RIE
Sbjct: 334 TDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIE 393
Query: 316 EAIRK 320
I K
Sbjct: 394 SHIGK 398
>gi|407798892|ref|ZP_11145795.1| RhlE [Oceaniovalibus guishaninsula JLT2003]
gi|407059240|gb|EKE45173.1| RhlE [Oceaniovalibus guishaninsula JLT2003]
Length = 476
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 147/301 (48%), Gaps = 17/301 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR++VLCPTREL+ QV + S H + ++ GG + Q+ ++ +D+++
Sbjct: 70 KARMPRSLVLCPTRELAAQVAENFDTYSAHVKLTKALLIGGVSFKEQDQLIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L H E G ++ D+K +V+DEAD M D GF PDI + N +P +QT
Sbjct: 130 TPGRLLDHHERGKLLLNDVKIMVVDEADRMLDMGFIPDIERIF----NILRRP----YQT 181
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS------ENKLEAL 187
+ SATM ++++ + + + + + GS K L
Sbjct: 182 LFFSATMAPEIERITNTFLTDPVRIEVARQATASETISQGVVLFKGSRKDRQPSEKRNLL 241
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
+++ + ++FCN V L + HG++ +R L+ F+
Sbjct: 242 RALIDAEGAACKNAIIFCNRKTDVDIVAKSLAKYGYDAAPIHGDLEQSQRTRTLDGFRT- 300
Query: 248 DGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
GD LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G +GK +
Sbjct: 301 -GDLRFLVASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGREGKAIMICTPS 359
Query: 307 D 307
D
Sbjct: 360 D 360
>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
Length = 639
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 18/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ ++ ++ S +V GG Q + DM++ TPGR
Sbjct: 263 PIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAAQQFREMERGCDMLIATPGR 322
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ ++ + I+YL LDEAD M D GF P IR+ ++ R P G QT+L S
Sbjct: 323 LIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQI---VEQRGMPPPGDR-QTMLFS 378
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSEN-KLEALLQVLEP 193
AT K +Q++ + Q L R + H I I+ S N K + L+ ++
Sbjct: 379 ATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQT----IEYVQSYNDKCQMLMDLVH- 433
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ +VF T + ++ +L++ + + HG+ QER L F++ G P
Sbjct: 434 --AVQGLTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFRS--GKTPI 489
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ V HVI FD P + DY+HR GRT R G KG T+ KD LA
Sbjct: 490 LVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLATAFFTDKDSSLA 548
>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 630
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 152/296 (51%), Gaps = 8/296 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+V+ PTRELS Q+ + ++ R +V GG R Q L+ ++V TPGR
Sbjct: 209 PAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGR 268
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G + + I+++VLDEAD M D GF P IR +V + P GQ QT+L S
Sbjct: 269 LWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIR-MIVQGQESDMPPPGQR-QTLLYS 326
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L E L+ + + D ++ +K E LL++L ++
Sbjct: 327 ATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRLLHE--NQ 383
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
++VF + ++ FL N+++ + HG+ +ER E L FK+ C LV T
Sbjct: 384 NQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKS--ASCQVLVAT 441
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
D+A+RGLD+ DV VI +D P N DY+HR GRT R G G+ S +K+ + D
Sbjct: 442 DVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVD 497
>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 551
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 151/287 (52%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 202 PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 261
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 262 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTLMWS 313
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + + +L +++ K + +++ LE + +
Sbjct: 314 ATWPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIKHLEKMMDN 373
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NKV++F T + + FL ++ ++ HG+ ER L++FK G P +V
Sbjct: 374 KENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVA 431
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GA G +
Sbjct: 432 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAVTF 478
>gi|383790911|ref|YP_005475485.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383107445|gb|AFG37778.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 553
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 157/304 (51%), Gaps = 12/304 (3%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+ +V+ PTREL++Q+++ AK + R R + GG QE LN+ +++GTPGR+
Sbjct: 73 KTLVIAPTRELADQIYQEAKLLGSSTRLRFAVCYGGVGYHKQEKELNDDPQVIIGTPGRL 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
+ H + G + + L++DEAD MFD GF PD+R + + P QT+L SA
Sbjct: 133 MDHAKSGRIKFEQFGVLIIDEADRMFDMGFYPDVRWMVSRM------PGTDVRQTMLFSA 186
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T++ V L E + + + + + + +S E K+ L +LE K
Sbjct: 187 TLSVKVMNLAWEYMREPVEITVAAEQITVETIKQAVYHVSKKE-KIPFLFGLLE--REKP 243
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
++F NT + V L+ ++ G++P +R + + K GD P LV TD
Sbjct: 244 KSCIIFTNTKRGAEEVSRRLSRKGYTSEFIMGDLPQSKRSAIIKRVKR--GDLPVLVATD 301
Query: 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGL + D++ VI FD P + +Y+HR GRTAR G G+ L ++ VL IE+
Sbjct: 302 VAARGLHVDDLEMVINFDVPEDPENYVHRIGRTARAGKSGRAFMLACERFVLGLPAIEDY 361
Query: 318 IRKN 321
I++
Sbjct: 362 IKQK 365
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 34/314 (10%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S H RS +V GG + PQ+++L +++V TPGR+
Sbjct: 95 RALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 155 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 204
Query: 137 SATMTKAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
SAT + ++KL E + A T+ +IA H + K A++ +
Sbjct: 205 SATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMH-------GDTKRAAVVHL 257
Query: 191 LEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ S+G +V+VF NT + + L + + + HG+ +R++ L FK G
Sbjct: 258 VK---SRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKA--G 312
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKD 307
D LV TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L A ++
Sbjct: 313 DLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEE 372
Query: 308 VLLADRIEEAIRKN 321
L D IE+ I++
Sbjct: 373 RYLLD-IEKLIKRQ 385
>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 515
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 162/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ +L + +D+VV TPGR+
Sbjct: 79 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 139 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK--------RQNLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 191 TFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDR----DKKRELLTHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 245 HNWFQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFK--DGTLQVLV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ +D P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 303 ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLKDI 362
Query: 315 EEAIRK 320
E+ I++
Sbjct: 363 EKLIKR 368
>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
gi|75325214|sp|Q6YS30.1|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
Length = 512
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 160/314 (50%), Gaps = 29/314 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR +VL PTREL++Q+ V S + GG PQ +L + +D+V+GTPGR
Sbjct: 168 PRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGR 227
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G D+ ++VLDEAD M D GF P++R L QTV+ S
Sbjct: 228 MKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAIL--------SQTASVRQTVMFS 279
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS----ARHDFIKL------SGSENKLEAL 187
AT AV +L E + + + I S A HD +++ +++L AL
Sbjct: 280 ATWPPAVHQLAQE------FMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVAL 333
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L ++ N+V+VF + V+ L S V+ HG+ +R + L+ FK
Sbjct: 334 LDKYHK--AQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFK-- 389
Query: 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306
+G CP ++ TD+A+RGLD+ DV+ VI + +PL + DY+HR GRT R G KG + ++
Sbjct: 390 EGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQE 449
Query: 307 DVLLADRIEEAIRK 320
+ LA + +R+
Sbjct: 450 NKGLAGELVNVLRE 463
>gi|388856716|emb|CCF49676.1| probable DEAD box protein (putative RNA helicase) [Ustilago hordei]
Length = 556
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 160/304 (52%), Gaps = 21/304 (6%)
Query: 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79
A VL PTREL+ Q+ + +++ RS + GG + Q +L+ ++V TPGR+
Sbjct: 180 ACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQ 239
Query: 80 QHIED--GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQTVL 135
H+E+ G + G ++YLV+DEAD + D FGP I K L +P + R T+L
Sbjct: 240 DHLENTKGFSLRG-LQYLVMDEADRLLDMDFGPIIDKLLQSIPRERR----------TML 288
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATMT V KL + + T + +++ + ++ + + + E +
Sbjct: 289 FSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYLFMPFAHKDTYLVHLANEQA- 347
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G+ ++VF T++ S+ + L + HG++ Q R+ LNKFK G LV
Sbjct: 348 --GHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKT--GGRSILV 403
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+A+RGLD+ VD V+ +D P NS DY+HR GRTAR G G+ +LV + DV L RI
Sbjct: 404 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 463
Query: 315 EEAI 318
E I
Sbjct: 464 EAVI 467
>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
Length = 795
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 157/312 (50%), Gaps = 20/312 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++ PTREL+ Q+ + K S + R+ + GG + Q + + N ++V TPGR
Sbjct: 364 PHVIIISPTRELTSQIHQQVKKFSLGSIIRAELAYGGTSVMHQSNRVLNGCHILVATPGR 423
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF-----LVPLKNRASKPNGQGFQ 132
+L I G + +++LVLDEAD M D GF PDI K + P + R Q
Sbjct: 424 LLDFIGRGKIRLSSLRFLVLDEADRMLDMGFLPDIEKLIDHETMAPAEER---------Q 474
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
T++ SAT +Q+L + L + A +F + SG K + L +++E
Sbjct: 475 TLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQSEKRKLLKELIE 534
Query: 193 PSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
GN +VF + + FL+E+ T + HG+ +ER E L FK G
Sbjct: 535 KQHQLGNIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALYDFKR--GK 592
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDV 308
LV T +AARGLD+ +V HVI FD P +Y+HR GRT R+G +GK TS + D+
Sbjct: 593 MLILVATAVAARGLDIKNVSHVINFDLPKTIDEYVHRIGRTGRVGNRGKATSFFDSSTDM 652
Query: 309 LLADRIEEAIRK 320
L D + + +++
Sbjct: 653 PLTDDLVKILKQ 664
>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
Length = 478
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 155/310 (50%), Gaps = 13/310 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K R PR ++L PTREL+ QV + + + ++ GG Q+ L +D+++
Sbjct: 69 KARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLTAGVDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ H E G ++ ++ LV+DEAD M D GF PDI K L R QT
Sbjct: 129 TPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRR--------QT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE-ALLQVLE 192
+L SATM + KL + + + + K +++++ +L+ +
Sbjct: 181 LLFSATMPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRAII 240
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
S N + VFCN V LN + HG++ R+E L KFKN GD
Sbjct: 241 ASCEVKNGI-VFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKN--GDLT 297
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV +D+AARGLD+ DV HV + P NS DY+HR GRT R G G+ ++V+ +D L
Sbjct: 298 LLVASDVAARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQKLW 357
Query: 312 DRIEEAIRKN 321
D + + I K+
Sbjct: 358 DAVVKRISKD 367
>gi|242004721|ref|XP_002423227.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212506206|gb|EEB10489.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 579
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 143/282 (50%), Gaps = 22/282 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++Q+ V + H + R+T + GG + Q L +++V+ TPGR
Sbjct: 173 PIVLVLAPTRELAQQIKEVTEDFGHSSGIRNTCIFGGAKRLSQARDLEKGVEIVIATPGR 232
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L ++ G YLVLDEAD M D GF P IRK + KP+ Q ++ S
Sbjct: 233 LLDFLDCGKTNLKRTTYLVLDEADRMLDMGFEPQIRKIFEQI-----KPDR---QVLMWS 284
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVL 191
AT K V+ L E + +L SA H+ +++ S E KL LL+
Sbjct: 285 ATWPKVVRNLAKEFLNDYTQINVGSLQ---LSANHNILQIIDVCQDSEKERKLSTLLK-- 339
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E K NK +VF T + + + + HG+ ER L F+N G
Sbjct: 340 EIMSEKENKTIVFIETKKRVEEITRKMRRDGWPAESIHGDKNQSERDHVLQDFRN--GRR 397
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292
P LV TD+AARGLD+ DV VI FD+P NS DY+HR GRTA+
Sbjct: 398 PILVATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTAK 439
>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 631
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 152/296 (51%), Gaps = 8/296 (2%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+V+ PTRELS Q+ + ++ R +V GG R Q L+ ++V TPGR
Sbjct: 210 PAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHELSRGCGLLVATPGR 269
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ G + + I+++VLDEAD M D GF P IR +V + P GQ QT+L S
Sbjct: 270 LWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIR-MIVQGQESDMPPPGQR-QTLLYS 327
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L E L+ + + D ++ +K E LL++L ++
Sbjct: 328 ATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQD-VRWVEDNDKREHLLRLLHE--NQ 384
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
++VF + ++ FL N+++ + HG+ +ER E L FK+ C LV T
Sbjct: 385 NQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKS--ASCQVLVAT 442
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
D+A+RGLD+ DV VI +D P N DY+HR GRT R G G+ S +K+ + D
Sbjct: 443 DVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVD 498
>gi|399216152|emb|CCF72840.1| unnamed protein product [Babesia microti strain RI]
Length = 561
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 156/288 (54%), Gaps = 11/288 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q++ A+ + R+ ++ GG +R Q L D+ V TPGR
Sbjct: 205 PVCLVLSPTRELAIQIYNEARKFNFGTGIRTVVLYGGSEVRAQLFDLEKGCDVCVATPGR 264
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + + +KYLVLDEAD M D GF P IR +++ + +G QTV+ S
Sbjct: 265 LTDLVERRKVNFTSVKYLVLDEADRMLDMGFSPQIRAI---VEDNGMPTSMEGRQTVMFS 321
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT + +Q L + + +L + R ++ +G + K + L+++L + S
Sbjct: 322 ATFPREIQILAKDFLRDYIYLTVGRVGSTNEFIRQR-VQYAGQDQKAKYLVKLLNEN-SN 379
Query: 198 GNKVMVFCNTLNSSRAVD-HFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
G V++F T + ++ + LNEN ++ V+ HG+ Q+R E L FK G P LV
Sbjct: 380 G-LVLIFVETKRRADMIEAYLLNENFLA-VSIHGDRSQQDREEALRLFKT--GKRPILVA 435
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
TD+AARGLD+ ++ HVI D P N DY+HR GRT R G G TS V
Sbjct: 436 TDVAARGLDISNITHVINCDLPSNIDDYVHRIGRTGRAGNFGLATSFV 483
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 160/318 (50%), Gaps = 42/318 (13%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV K+ S RST+V GG + PQ +L +++V+ TPGR+
Sbjct: 94 RALILTPTRELADQVAENVKAYSRFTPLRSTVVFGGVDMAPQTATLRAGVEIVIATPGRL 153
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H++ + + LV+DEAD M D GF PD+++ L+P K R Q +L
Sbjct: 154 LDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP-KQR---------QNLLF 203
Query: 137 SATMTKAVQKLVDE-----------ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185
SAT + ++KL A + T++K +A+ D + + +L+
Sbjct: 204 SATFSPEIKKLAASFQNNPVTIEVARSNATAENVSQTIYKVEEAAKADAVSFIIRQRELK 263
Query: 186 ALLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+V+VF NT + +SR + E + HG+ ER+ L F
Sbjct: 264 --------------QVIVFSNTKIGASRLARTLVAEG-VKASAIHGDKTQSERMAALESF 308
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K G LV TD+AARGLD+ ++ VI +D P N+ DY+HR GRT R GA G SL
Sbjct: 309 KQ--GQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLF 366
Query: 304 AKKDVLLADRIEEAIRKN 321
KD L IE+ I+K
Sbjct: 367 CDKDERLLVDIEKLIKKK 384
>gi|412988365|emb|CCO17701.1| predicted protein [Bathycoccus prasinos]
Length = 497
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 145/297 (48%), Gaps = 14/297 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q+ A+ ++ R+ +V GG Q + D+++ TPGR
Sbjct: 129 PLALVLSPTRELAIQIHEEARKFAYKTGCRAVVVYGGAPAAEQFREMERGCDILIATPGR 188
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ I+ + +YL LDEAD M D GF P IR+ L + P QT+L S
Sbjct: 189 LIDLIDRAKVGLAKCEYLALDEADRMLDMGFEPQIRQ----LVEQRDMPRTGERQTMLFS 244
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE--PSL 195
AT K +Q++ + L + + +K + LL + E P L
Sbjct: 245 ATFPKEIQRMASDFLHDYVFLTVGRVGSSTELINQTVCYVPSYYDKTQMLLDLTEAVPGL 304
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +VF T + ++ FL E + HG+ QER L F+ G P LV
Sbjct: 305 T-----LVFVETKRGADQLEDFLCEQGKPATSIHGDRTQQEREAALKSFRA--GRTPILV 357
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
TD+AARGLD+ V HV+ FD P + DY+HR GRT R G KG+ T+L KD +A
Sbjct: 358 ATDVAARGLDIPHVTHVVNFDLPTDIDDYVHRIGRTGRAGKKGQATALFGDKDAGIA 414
>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
Length = 639
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 159/311 (51%), Gaps = 17/311 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ ++ + + GG + Q L ++++V TPGR
Sbjct: 249 PLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGR 308
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + IKYL LDEAD M D GF P IRK ++ P G+ QT+L S
Sbjct: 309 LMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKI---VEQMDMPPRGER-QTMLFS 364
Query: 138 ATMTKAVQK-----LVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
AT K +Q+ L D + + +ST + R +F+ + + L LL
Sbjct: 365 ATFPKEIQRMASDFLADYIFLAVGRVGSST---DLIVQRVEFVLDADKRSYLMDLLHAQR 421
Query: 193 PSLSKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ + G + +VF T + A++++L N + HG+ QER L FK+ G
Sbjct: 422 ANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKS--GA 479
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
P LV TD+AARGLD+ V HVI FD P + DY+HR GRT R G G T+ + +
Sbjct: 480 TPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTP 539
Query: 310 LADRIEEAIRK 320
LA + E +++
Sbjct: 540 LARPLSELMQE 550
>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
Length = 443
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 26/308 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PR+++L PTREL+ QV + + + ++ GG ++ Q +L +D+++ TPGR
Sbjct: 73 PRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKALEKGVDVLIATPGR 132
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ E G ++ LV+DEAD M D GF PDI L + QT+L S
Sbjct: 133 LMDLFERGKILLNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQR--------QTLLFS 184
Query: 138 ATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
ATM ++KL D + I R +T IA +K+ + K EAL +L+
Sbjct: 185 ATMPPVIKKLADRFLSNPKSIEVARPATASTNIA---QHLVKVD-ARKKREALRALLD-- 238
Query: 195 LSKGNKV---MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
G +V ++FCN + R ++ L + + HG++ R+ L +F+ DG
Sbjct: 239 ---GQQVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFR--DGTV 293
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV +D+AARGLD+ V HV FD P + DY+HR GRT R GAKG + V K D
Sbjct: 294 NILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTKDDAEA 353
Query: 311 ADRIEEAI 318
D I++ I
Sbjct: 354 IDNIQKLI 361
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 152/300 (50%), Gaps = 18/300 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV ++ S H RS +V GG + PQ + L +D++V TPGR+
Sbjct: 93 RALVLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINRLRGGVDLLVATPGRL 152
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L + G + + ++ LVLDEAD M D GF DIR+ L+P+K QT+L
Sbjct: 153 LDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPVKR----------QTLLF 202
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL HL+ T + A + + K + L ++
Sbjct: 203 SATFSAPIRKLASGLLHDPVHLQV-TPENQTARSVEQVVHPCDMARKSDLLSHLIR--AG 259
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+V+VF T + + V L++ +S HG R L FK G+ LV
Sbjct: 260 DWRQVLVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQ--GNIRVLVA 317
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARG+D+ + HV+ D P + DY+HR GRT R G G SLVA ++ LL IE
Sbjct: 318 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIE 377
>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
Length = 643
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 152/289 (52%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q ++ ++V GTP
Sbjct: 283 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAHQIREISRGCNVVCGTP 342
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 343 GRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKENRQTLM 398
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L + + L + + FI+++ +K E L +L+
Sbjct: 399 FSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLHDLLK-- 455
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP L
Sbjct: 456 TTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALTDFRS--GKCPVL 513
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 514 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 562
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 23/317 (7%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P+R +VL PTREL+ Q+ +++ + ++ GG + Q L +
Sbjct: 101 LLASPQRLHTLVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMSQSLVLAKKPHI 160
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
V+ TPGR++ H+E+ +K+LV+DEAD + + F ++ K L +P + R
Sbjct: 161 VIATPGRLIDHMENTKGFSLRALKFLVMDEADRILNMDFETEVDKILKVIPRERR----- 215
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR--HDFIKLSGSENKLE 185
T L SATMTK VQKL + ST + + + + FI + L
Sbjct: 216 -----TFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDKLQQYYVFIPAKYKDCYLV 270
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
++L L GN M+FC+T N+++ V L I+ + HG++ +R+ LNKFK
Sbjct: 271 SILNEL-----AGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFK 325
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
++ L+ TD+A+RGLD+ VD VI +D P +S DY+HR GRTAR G GK + V
Sbjct: 326 SKSRS--VLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVT 383
Query: 305 KKDVLLADRIEEAIRKN 321
+ DV L RIE I K
Sbjct: 384 QYDVELFQRIESLIGKK 400
>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
gi|74699927|sp|Q4P3U9.1|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
Length = 551
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 162/309 (52%), Gaps = 21/309 (6%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ A VL PTREL+ Q+ + +++ RS + GG + Q +L+ ++V T
Sbjct: 170 PKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVAT 229
Query: 75 PGRILQHIED--GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQG 130
PGR+ H+E+ G + G ++YLV+DEAD + D FGP I K L +P + R
Sbjct: 230 PGRLQDHLENTKGFSLRG-LQYLVMDEADRLLDMDFGPIIDKLLQSIPRERR-------- 280
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
T+L SATMT V KL + + T + +++ + ++ + + +
Sbjct: 281 --TMLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLA 338
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
E + G+ ++VF T++ S+ + L + HG++ Q R+ LNKFK G
Sbjct: 339 NEQA---GHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKT--GG 393
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+A+RGLD+ VD V+ +D P NS DY+HR GRTAR G G+ +LV + DV
Sbjct: 394 RSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVE 453
Query: 310 LADRIEEAI 318
L RIE I
Sbjct: 454 LLQRIEAVI 462
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S RS +V GG + PQ+++L +++V TPGR+
Sbjct: 95 RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 154
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 155 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPTQR----------QGLLF 204
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + K+SG + K A++ +++ S
Sbjct: 205 SATFSNEIRKLGRSYLNHPVEIEVAARNATATTITQIAYKMSG-DAKRAAVVHLVK---S 260
Query: 197 KG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G +V+VF NT + + L + + + HG+ +R++ L FK G+ LV
Sbjct: 261 RGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKA--GELEVLV 318
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L + I
Sbjct: 319 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFLLDI 378
Query: 315 EEAIRKN 321
E+ I++
Sbjct: 379 EKLIKRE 385
>gi|359419518|ref|ZP_09211469.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
gi|358244479|dbj|GAB09538.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
Length = 569
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 165/308 (53%), Gaps = 15/308 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRV-AKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
R+P+A+VL PTREL+ QV + +H R + GG Q L ++VGT
Sbjct: 74 RKPQALVLAPTRELALQVAEAFGRYAAHIPELRVLPIYGGQSYGVQLSGLRRGAQVIVGT 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR++ H++ G + ++++LVLDEAD M GF D+ + L A P+ + Q
Sbjct: 134 PGRVIDHLDKGTLDISELEFLVLDEADEMLTMGFAEDVERIL------ADTPDSK--QVA 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SATM KA+ +L + A + + + ++++S + KL+AL +VLE
Sbjct: 186 LFSATMPKAIGRLAQKYLHDPAEVTVKSKTSTAQNITQKYLQVS-HQRKLDALTRVLE-- 242
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + + ++VF T +++ + L +S + +G++ +R +N+ K +G L
Sbjct: 243 VEQFDGMIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLK--EGSLDIL 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + HV+ +D P ++ Y+HR GRT R G G V+ ++ L
Sbjct: 301 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRA 360
Query: 314 IEEAIRKN 321
IE+A R++
Sbjct: 361 IEKATRQS 368
>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
nagariensis]
gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
nagariensis]
Length = 612
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 149/304 (49%), Gaps = 15/304 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q++ A+ ++ R ++ GG Q L D++V TPGR
Sbjct: 235 PGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQLRDLERGCDILVATPGR 294
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ IE G + I +L LDEAD M D GF P IR+ ++ P GQ QT++ S
Sbjct: 295 LSDFIERGRVGLSSILFLCLDEADRMLDMGFEPQIRRI---VEQEDMPPVGQR-QTLMFS 350
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + +++ +N L L+ +E
Sbjct: 351 ATFPKEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHIEYVSSDEKQNTLLDLISTVE--- 407
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+VF T + ++ L NQ+ + HG+ ++R L FK+ G P +V
Sbjct: 408 ---GLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKS--GKTPVMV 462
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V HVI +D P + DY+HR GRT R G KG T+ D LA +
Sbjct: 463 ATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDADAPLARSL 522
Query: 315 EEAI 318
E +
Sbjct: 523 VEVL 526
>gi|335044241|ref|ZP_08537266.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
gi|333787487|gb|EGL53371.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
Length = 434
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 160/305 (52%), Gaps = 12/305 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
++PRA++L PTREL+ Q+ + A+ ++ + R + GG + Q D + +D+++GTP
Sbjct: 82 KQPRALILAPTRELAIQIAKDAEKLNVESNLRIGIAHGGKDYQRQRDMITGGLDILIGTP 141
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L + + I +VLDEAD MFD GF D+R FL R KP + +L
Sbjct: 142 GRLLDYQKQHVFSLKFIDVVVLDEADRMFDLGFIKDVRYFL----RRIPKPEQR--LGML 195
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT++ V +L E ++ K + +++ ++ K+ LL ++ +
Sbjct: 196 FSATLSYKVSELAYEHMNNPEKVQVEP-EKMMGDRIEEWVYYPANDEKIPLLLALI--AR 252
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ ++F NT ++ V +L N G+VP ++R L F +DG+ P LV
Sbjct: 253 LNPERGIIFVNTKQAAEVVWGYLEGNGYKASLLSGDVPQKKRERLLQHF--QDGEFPFLV 310
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGL + V HV +D P + DY+HRTGRTAR GA G SL ++ V I
Sbjct: 311 ATDVAARGLHIPAVSHVFNYDLPQDVEDYVHRTGRTARAGASGVAISLACEEYVFSLPDI 370
Query: 315 EEAIR 319
E I+
Sbjct: 371 EAYIK 375
>gi|357156241|ref|XP_003577389.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like
[Brachypodium distachyon]
Length = 609
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 156/309 (50%), Gaps = 11/309 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 222 PLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRDLERGVDILVATPGR 281
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P +R+ + + P QT+L S
Sbjct: 282 LVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV----EQMDMPPRGVRQTLLFS 337
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTL--HKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
AT +Q++ + + L + ++ + R +F+ + + L LL S
Sbjct: 338 ATFPGEIQRMASDFLENYIFLAVGRVGSSTELIAQRVEFVHEADKRSHLMDLLHAQRDSA 397
Query: 196 SKGNKV--MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
G + +VF T + +++++L N + HG+ QER L FK+ G P
Sbjct: 398 DHGKQALTLVFVETKRGADSLENWLCTNGFPATSIHGDRNQQEREYALRSFKS--GQTPI 455
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + +A
Sbjct: 456 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFSDNNASMAK 515
Query: 313 RIEEAIRKN 321
+ + ++++
Sbjct: 516 SLADLMQES 524
>gi|449265651|gb|EMC76814.1| putative ATP-dependent RNA helicase DDX17, partial [Columba livia]
Length = 481
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 153/290 (52%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST + GG PQ L +++ + TPGR
Sbjct: 149 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 208
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 209 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 260
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ Q + L SA H+ +++ K L+Q++E
Sbjct: 261 ATWPKEVRQLAEDFLQDYVQINVGNLE---LSANHNILQIVDVCMESEKDHKLIQLMEEI 317
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER LN+F++ G P
Sbjct: 318 MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS--GKAPI 375
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG +
Sbjct: 376 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTF 425
>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
carolinensis]
Length = 1021
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 152/294 (51%), Gaps = 21/294 (7%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P +++ PTREL Q+F ++ S+ R ++ GG ++ + +++ TP
Sbjct: 290 QEPECIIVAPTRELINQIFLESRKFSYGTCVRPVVIYGGIQMGHTIHQIMQGCNILCATP 349
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + +KYLVLDEAD M D GFGPD++K + + P+ QT++
Sbjct: 350 GRLLDIINRGKIGLTKLKYLVLDEADRMLDMGFGPDMKKLI----SSPGMPSKDQRQTLM 405
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLH---KKIASARHDF---IKLSGSENKLEALLQ 189
SAT + +Q+L E L+ L ++ A D I +K E LL+
Sbjct: 406 FSATFPEEIQRLAGE------FLKVDYLFVVVGQVGGACSDVEQTILQVNQYDKREKLLE 459
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L ++ K + MVF T + + FL + I T + HG+ +ER E L F++ G
Sbjct: 460 ILN-AIGK-ERTMVFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQCFRS--G 515
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
CP LV T +AARGLD++ V HVI FD P +Y+HR GRT R G GK S
Sbjct: 516 KCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGKAISF 569
>gi|385653332|ref|ZP_10047885.1| superfamily II DNA and RNA helicase, partial [Leucobacter
chromiiresistens JG 31]
Length = 608
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 157/307 (51%), Gaps = 19/307 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
P+A+VL PTREL+ QV +S + H V GG Q +L +D+VVGTPG
Sbjct: 87 PQALVLAPTRELALQVCEAFESYAAHLPEVHLLPVYGGQAYGQQLSALRRGVDIVVGTPG 146
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
RI+ H++ G++ IKYLVLDEAD M GF D+ L A P Q Q L
Sbjct: 147 RIMDHLKRGSLDLTQIKYLVLDEADEMLKMGFAEDVETIL------ADTP--QEKQVALF 198
Query: 137 SATMTKAVQKLVDEECQGIAHLRTS--TLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SATM ++++ + ++ + T + R++ + + KL+AL ++LE
Sbjct: 199 SATMPAQIRRISQQYLNDPREIKIAGKTQTSSTITQRYNVVSYT---QKLDALTRILE-- 253
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + ++VF T S V L S +G++P +R + K DG L
Sbjct: 254 VEDFDAMIVFTRTRGDSEQVAEKLRARGYSAAAINGDIPQAQRERTVQSLK--DGKLDIL 311
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD++ + HV+ +D P+++ Y+HR GRT R G G S V ++ L
Sbjct: 312 VATDVAARGLDVERISHVLNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPREQRLLKA 371
Query: 314 IEEAIRK 320
IE+A ++
Sbjct: 372 IEKATKQ 378
>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
gi|75326432|sp|Q75HJ0.1|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
Full=OsPL10a
gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
Japonica Group]
gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
Length = 637
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 25/313 (7%)
Query: 15 PRRPR--------AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
P+RPR A++L PTRELS Q+ A+ ++ R + GG + Q L
Sbjct: 242 PQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELER 301
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
++++V TPGR++ +E + +KYL LDEAD M D GF P IRK + + P
Sbjct: 302 GVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIV----EQMDMP 357
Query: 127 NGQGFQTVLVSATMTKAVQK-----LVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181
QT+L SAT K +Q+ L D + + +ST + + R +F+ +
Sbjct: 358 PRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSST---DLIAQRVEFVLEADKR 414
Query: 182 NKLEALLQVLEPSLSKGNKV--MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
+ L LL + + + G + +VF T + A++++L N + HG+ QER
Sbjct: 415 SYLMDLLHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREY 474
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L FK+ G P LV TD+AARGLD+ V HVI FD P + DY+HR GRT R G G
Sbjct: 475 ALRSFKS--GATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGL 532
Query: 299 VTSLVAKKDVLLA 311
T+ + ++ LA
Sbjct: 533 ATAFFNEGNLSLA 545
>gi|451936623|ref|YP_007460477.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777546|gb|AGF48521.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 447
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 167/306 (54%), Gaps = 28/306 (9%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
R+++L PTREL++QV+ K S + + RS ++ GG L Q+D L+ +++V TPGR+
Sbjct: 92 RSLILVPTRELADQVYECIKLYSKNTKLRSLVLFGGVDLEQQKDLLHKGCEILVATPGRL 151
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTVLVS 137
+ HI N+ ++ LVLDEAD M D GF PD+ + + L KNR Q++L S
Sbjct: 152 IAHINQKNISLINVDTLVLDEADRMLDMGFIPDVDRIVGMLPKNR---------QSLLFS 202
Query: 138 ATMTKAVQKLVDEECQGIAHLRTS-----TLHKKIASARHDFIKLSGSENKLEALLQVLE 192
AT ++ ++KL G+ +L+ T+ IA + +K A+L ++
Sbjct: 203 ATFSEGIRKL------GLTYLKDPVEADVTVPNSIADTVQQISYKIFNNDKYAAMLFLIR 256
Query: 193 PSLSKGNK-VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G K +VF NT + + +L+ N+++T HG+ +ER+ LN FK G+
Sbjct: 257 ---SAGMKHAIVFTNTKIGANKLASYLSLNKVNTDCIHGDKTQKERIRILNDFKL--GEL 311
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+ ARGLD+ + VI FD P N+ DY+HR GRT R +G SL +++ +
Sbjct: 312 DILVATDVVARGLDIVGISCVINFDIPHNAEDYVHRIGRTGRANKEGSAISLYYQEEDIY 371
Query: 311 ADRIEE 316
IE+
Sbjct: 372 LLEIEK 377
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 158/304 (51%), Gaps = 14/304 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV + + + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 82 RALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALRRGVDIVVATPGRL 141
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L ++ Q +L SA
Sbjct: 142 LDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQR--------QNLLFSA 193
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
T + ++ L D A + + + + + + K E L +++
Sbjct: 194 TFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPVD-RDRKRELLTHLIK--AHNW 250
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+V+VF T + + + L ++ IS + HG R L++FK DG LV TD
Sbjct: 251 FQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFK--DGTLQVLVATD 308
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARG+D+D + HV+ FD P DY+HR GRT R GA G+ SLV + L IE
Sbjct: 309 IAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCIDEHQLLTDIERL 368
Query: 318 IRKN 321
I++
Sbjct: 369 IKRT 372
>gi|423484523|ref|ZP_17461212.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG6X1-2]
gi|401137984|gb|EJQ45559.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG6X1-2]
Length = 481
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 157/310 (50%), Gaps = 28/310 (9%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ V G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE--PS 194
SAT+ + V+KL + H+ K A D I+ + E + E L +L+ +
Sbjct: 184 SATLPEDVEKLSRKYMDSPTHIEI-----KAAGITTDKIEHTLFETREEEKLSLLKDVTT 238
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDG 249
+ + ++FC T + VDH Q+ VNY HG + ++R E ++ F+ G
Sbjct: 239 IENPDSCIIFCRTQEN---VDHVF--KQLDRVNYPCDKIHGGMVQEDRFEVMDDFRK--G 291
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G KGK + + +
Sbjct: 292 KFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEN 351
Query: 309 LLADRIEEAI 318
+ IEE I
Sbjct: 352 RFLEEIEEYI 361
>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
Length = 1464
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 153/287 (53%), Gaps = 13/287 (4%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+AV++ PTREL+ Q+F A+ + + + ++V GG + Q + + +++ TPG
Sbjct: 1121 KPQAVIVSPTRELAIQIFSEARKFAFESYLKISIVYGGTSFKHQNECITKGCHVLIATPG 1180
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L ++ + + D +++VLDEAD M D GF +RKF + ++ +P QT++
Sbjct: 1181 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKF---MNHQTMRPE---HQTLMF 1234
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + +Q+L E + + + + + ++ NK +++E
Sbjct: 1235 SATFPEEIQRLAGEFLKSYVFVTIGVVGGACSDVQQTIYEV----NKFAKRSKLMEILRE 1290
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+ + +VF T + + FL+E + T + HG+ +R + L FKN G ++
Sbjct: 1291 QADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKN--GSMKVIIA 1348
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
T +AARGLD+ ++ HV+ FD P N DY+HR GRT R+G G+ TS
Sbjct: 1349 TSVAARGLDIKNIKHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSF 1395
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 163/313 (52%), Gaps = 15/313 (4%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+L P R A+VL PTREL+ Q+ +++ + +V GG + Q +L +
Sbjct: 88 LLDTPTRLFALVLTPTRELAFQISEQFEALGGRIGVKCAVVVGGVDMMTQALALAKKPHV 147
Query: 71 VVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
V+ TPGR++ H+E+ +KYLV+DEAD + + FG ++ K L L
Sbjct: 148 VIATPGRLVDHLENTKGFSLRSVKYLVMDEADRILNMDFGEEVDKILKVLSRER------ 201
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+T L SATMTK VQKL + ST ++ + + +I + S+ K L+
Sbjct: 202 --RTYLYSATMTKKVQKLQRASLHNPIKVEVSTKYQTVDKLQQSYIFIP-SKYKDCYLVS 258
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L GN MVFC+T +++ L + + +G++ +R+ L+KFK++
Sbjct: 259 ILNEF--AGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFKSKSR 316
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G G+ + V + DV
Sbjct: 317 SI--LIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQYDV 374
Query: 309 LLADRIEEAIRKN 321
L RIE I K
Sbjct: 375 ELYQRIESLIGKK 387
>gi|413963566|ref|ZP_11402793.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413929398|gb|EKS68686.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 502
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 165/313 (52%), Gaps = 27/313 (8%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+RP RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV T
Sbjct: 74 KRPVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVVAT 133
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L H++ + ++ LVLDEAD M D GF DI++ L L + Q +
Sbjct: 134 PGRLLDHMQQKTIDVSQLEILVLDEADRMLDMGFIHDIKRVLARLPAKR--------QNL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
L SAT + ++ L D A + R +T + + H + + K E L ++
Sbjct: 186 LFSATFSDEIKALADSLLDSPALIEVARRNTTAETVDQKIHPVDR----DRKRELLTHLI 241
Query: 192 EPSLSKGN---KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+GN +V+VF T + + + L ++ IS + HG R L++FK E
Sbjct: 242 -----RGNNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAE- 295
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA+G+ SLV +
Sbjct: 296 -TLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDE 354
Query: 308 VLLADRIEEAIRK 320
L IE I++
Sbjct: 355 HQLLKDIERLIKR 367
>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
Length = 488
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 160/309 (51%), Gaps = 23/309 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ S + + RST++ GG + PQ D+L +D+VV TPGR+
Sbjct: 78 RALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRL 137
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + + LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 138 LDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLLFSA 189
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 190 TFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKRELLTHLIRE-- 243
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L++FK+ LV
Sbjct: 244 HNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSS--TLQVLV 301
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLH---RTGRTARMGAKGKVTSLVAKKDVLLA 311
TD+AARG+D+D + HV+ FD P DY+H RTGRT R GA G+ SLV + L
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDEKQLL 361
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 362 RDIERLIKR 370
>gi|365854792|ref|ZP_09394859.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
gi|363719803|gb|EHM03100.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
Length = 508
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 154/320 (48%), Gaps = 36/320 (11%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
+ G K R PR+++L PTREL+ QV H + ++ GG + Q D+LN
Sbjct: 48 LAGSRAKARMPRSLILEPTRELALQVAENFVKYGQHMKLTHALLIGGESMAEQTDALNQG 107
Query: 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK---FLVPLKNRAS 124
+D+++ TPGR++ E G ++ D K LV+DEAD M D GF PD+ + L PL+
Sbjct: 108 VDVLIATPGRLIDLFERGRVMLADCKILVIDEADRMLDMGFIPDVERIVTLLPPLR---- 163
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQG---IAHLRTSTLHKKIASA-----RHDFIK 176
QT+ SATM ++KL D Q I R +++ I + HD +
Sbjct: 164 -------QTLFFSATMAPEIRKLADAFLQNPKEITVSRPASVATTITTGLALVPEHDKRR 216
Query: 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
+ E++ ++FCN + L+++ S HG++
Sbjct: 217 ALRKLLRRESV-----------QNALIFCNRKRDVDILYKSLSKHGFSVGALHGDLAQSV 265
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
R L KFKN + LVC+D+AARG+D+ + HV FD P ++ DY+HR GRT R G
Sbjct: 266 RFATLEKFKN--NEVQLLVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGR 323
Query: 296 KGKVTSLVAKKDVLLADRIE 315
+G S+ D L IE
Sbjct: 324 EGHAYSIATADDAKLLAAIE 343
>gi|399992257|ref|YP_006572497.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400753930|ref|YP_006562298.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
gi|398653083|gb|AFO87053.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
2.10]
gi|398656812|gb|AFO90778.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 516
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 29/307 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDKGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ D+K +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIA-------SARHDFIKLSGSE 181
QT+ SATM ++++ + A + R +T + I ++R D GSE
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRD---REGSE 236
Query: 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
K + L +++ K ++FCN V L + HG++ +R + L
Sbjct: 237 -KRKLLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTL 295
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
F+ +G LV +D+AARGLD+ V HV FD P ++ DY+HR GRT R G G
Sbjct: 296 EGFR--EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAM 353
Query: 301 SLVAKKD 307
+ KD
Sbjct: 354 MICVPKD 360
>gi|389797680|ref|ZP_10200720.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
gi|388446754|gb|EIM02774.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
Length = 609
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 15/309 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+P +P+A+VL PTREL+ QV ++ + H F+ + GG PQ SL + +VV
Sbjct: 68 RPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKRGVHVVV 127
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGR++ H++ G + ++K+LVLDEAD M GF D+ K L +A+ P G Q
Sbjct: 128 GTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVL-----QATPP---GRQ 179
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
L SATM ++K+ + + A+ + +SG +KL+AL ++LE
Sbjct: 180 VALFSATMPAPIRKIAQRHLKNPVEVTIKAATTTAANIHQRYWFVSGM-HKLDALTRILE 238
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ +++F T ++ + L ++ +G++ +R + + K DG
Sbjct: 239 --AEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLK--DGKLD 294
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD++ + HV+ +D P ++ Y+HR GRT R G G+ V+ ++ +
Sbjct: 295 ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML 354
Query: 312 DRIEEAIRK 320
IE A R+
Sbjct: 355 HAIERATRQ 363
>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
gi|75325411|sp|Q6Z4K6.1|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
Full=OsPL10b
gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
Length = 638
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 159/311 (51%), Gaps = 17/311 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ ++ + + GG + Q L ++++V TPGR
Sbjct: 248 PLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGR 307
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + IKYL LDEAD M D GF P IRK ++ P G+ QT+L S
Sbjct: 308 LMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKI---VEQMDMPPRGER-QTMLFS 363
Query: 138 ATMTKAVQK-----LVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
AT K +Q+ L D + + +ST + R +F+ + + L LL
Sbjct: 364 ATFPKEIQRMASDFLADYIFLAVGRVGSST---DLIVQRVEFVLDADKRSYLMDLLHAQR 420
Query: 193 PSLSKGNKV--MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ + G + +VF T + A++++L N + HG+ QER L FK+ G
Sbjct: 421 ANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKS--GA 478
Query: 251 CPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
P LV TD+AARGLD+ V HVI FD P + DY+HR GRT R G G T+ + +
Sbjct: 479 TPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTP 538
Query: 310 LADRIEEAIRK 320
LA + E +++
Sbjct: 539 LARPLSELMQE 549
>gi|358382238|gb|EHK19911.1| hypothetical protein TRIVIDRAFT_83250 [Trichoderma virens Gv29-8]
Length = 549
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 208 PIVLILAPTRELAVQIQQEISKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 267
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 268 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMWS 319
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL-S 196
AT K V+ L + Q + ++ +++ K + +++ LE + +
Sbjct: 320 ATWPKEVRALAADFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHLEKVMEN 379
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER L++FK G P +V
Sbjct: 380 KENKILIFVGTKRIADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVA 437
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R G G +L
Sbjct: 438 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGQHGTAITL 484
>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
Length = 545
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 155/297 (52%), Gaps = 32/297 (10%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 210 PIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 269
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 270 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPDR---QTLMYS 321
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIA----SARHDFIKLSGSENKLEA------- 186
AT K V+ + A +T + I SA H ++ + +E
Sbjct: 322 ATWPKEVRAMA-------ADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKH 374
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L QV+E +K NK+++F T + + FL ++ ++ HG+ ER L++FK
Sbjct: 375 LEQVME---NKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 431
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
G P +V TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 432 --GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 486
>gi|391229094|ref|ZP_10265300.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391218755|gb|EIP97175.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 539
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 14/303 (4%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R R +VL PTREL+ QV + S + +T+V GG Q + L +D++ TPG
Sbjct: 201 RLRCLVLEPTRELALQVEEAFQKYSKYTDLTTTIVYGGVGYGKQREDLQRGVDVLAATPG 260
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+E G + I+ L+LDE D M D GF PD+++ + QT+
Sbjct: 261 RLLDHLEQGTLTLDSIEILILDEVDRMLDMGFLPDVKRIVQQCPRER--------QTLFF 312
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ + +L + ++ + H F + S+ K + L+++L+ +
Sbjct: 313 SATLPPELAQLSSWALRDPVQIKIGQRRSPAETVSHAFYPVVASQ-KFDLLIELLKRTEF 371
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K +++F T + + H L Q + H + +ERVE L FK+ G LV
Sbjct: 372 K--SIIIFTRTKMGADRIAHRLQREQHTVGVIHSDRSQRERVEALEGFKS--GKFEVLVA 427
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ V HVI +D P N+ DY+HR GRT R A G +LV + DV A IE
Sbjct: 428 TDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDVRDARSIE 487
Query: 316 EAI 318
I
Sbjct: 488 RYI 490
>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
Length = 536
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 156/299 (52%), Gaps = 18/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L +++ + TPGR
Sbjct: 194 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTRGVEVCIATPGR 253
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 254 LIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 305
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L ++ Q + + + SA H +++ K + +++ LE
Sbjct: 306 ATWPKDVRQLANDFLQDYIQV---YIGSQALSANHRITQIVEVVSEFEKRDRMIKHLERI 362
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ K +KV++F T + + FL ++ ++ HG+ ER LN+FK G P
Sbjct: 363 MEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPI 420
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
+V TD+A+RG+D+ D+ HV+ D+P NS DY+HR GRT R GA G +L ++ A
Sbjct: 421 MVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQA 479
>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
Length = 710
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 149/288 (51%), Gaps = 9/288 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+++ PTREL+ Q++ K S ++ R ++ GG + Q + + N ++V TPGR
Sbjct: 348 PHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQTNKVFNGCHVLVATPGR 407
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+L I G +V +++ VLDEAD M D GF PDI K L + + + Q ++ S
Sbjct: 408 LLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKIL----DHETMVAAEERQMLMFS 463
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L + L + A F + SG +K + L +++E
Sbjct: 464 ATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKRKLLKELIEKQNQL 523
Query: 198 GN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G+ +VF + + FL+EN T + HG+ +ER E L+ FK G LV
Sbjct: 524 GSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALSDFKK--GKMSILV 581
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
T +AARGLD+ +V HVI FD P +Y+HR GRT R+G +GK TS
Sbjct: 582 ATAVAARGLDIKNVSHVINFDLPQTIDEYVHRIGRTGRVGNRGKATSF 629
>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
Length = 643
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 152/289 (52%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ + R +V GG Q + ++V GTP
Sbjct: 284 QEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCNVVCGTP 343
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+R+ L P+ + QT++
Sbjct: 344 GRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRR----LVGSPGMPSKEDRQTLM 399
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q++ + + L + + FI+++ +K E LL +L+
Sbjct: 400 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVT-KFSKREQLLDLLK-- 456
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+ + MVF T + + FL + ++ T + HG+ +ER + L F++ G CP +
Sbjct: 457 TTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS--GKCPVM 514
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD+ DV HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 515 VATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSF 563
>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
Length = 530
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 156/301 (51%), Gaps = 22/301 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P+ R +VL PTRELS Q+ + H R ST+ GG + Q SL ++++V
Sbjct: 86 QPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVLVA 145
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L ++ + G +++LVLDEAD M D GF DIRK + +P+K
Sbjct: 146 TPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKR---------- 195
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM K + +L D + A + + + +++ S K L ++L
Sbjct: 196 QTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTAERINQRILQVDFSA-KPAFLTKLL 254
Query: 192 --EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
EP N+ +VF T + + V L + I+ HG R L +F++ G
Sbjct: 255 KDEPI----NRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRS--G 308
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
D TLV TD+AARG+D+D + HVI FD P Y+HR GRTAR GA+G SLVA +
Sbjct: 309 DIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEE 368
Query: 309 L 309
L
Sbjct: 369 L 369
>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
Length = 552
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 155/297 (52%), Gaps = 32/297 (10%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 210 PIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 269
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 270 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQI-----RPD---RQTLMYS 321
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIA----SARHDFIKLSGSENKLEA------- 186
AT K V+ + A +T + I SA H ++ + +E
Sbjct: 322 ATWPKEVRAMA-------ADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKH 374
Query: 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246
L QV+E +K NK+++F T + + FL ++ ++ HG+ ER L++FK
Sbjct: 375 LEQVME---NKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 431
Query: 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
G P +V TD+A+RG+D+ ++ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 432 --GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 486
>gi|301623430|ref|XP_002941020.1| PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Xenopus
(Silurana) tropicalis]
Length = 522
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 165/316 (52%), Gaps = 14/316 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPG 76
PR +VL P+REL+ Q+ VA++ + V GG E L PID++V TPG
Sbjct: 189 PRCLVLVPSRELAGQIVSVAQNFCAKLQLTVQFVGGGLGQTAVESKLGRGPIDILVATPG 248
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG----FQ 132
+ + ++ + ++ Y+VLDE DT+ D F L +K +S + QG Q
Sbjct: 249 ALWKALQKDIISLNELCYVVLDEVDTLIDHTFLKLTGDILKHIKIASSPSDLQGSEKMAQ 308
Query: 133 TVLVSATMTKAVQKLVDE--ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
++ AT +++ + + I +++S +H + + F+++ GSE LE L +
Sbjct: 309 LAVIGATFPNGTDQVLGKITGLENITTIKSSKVHFPLLHVQQTFLRVKGSEKVLELLTLL 368
Query: 191 LEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ + S G+ V +FCN+ ++ + + L E+ + HG++PA+ R+ F + G
Sbjct: 369 KKQQVGSPGSGVFIFCNSSSTVNWLSYILEEHGMKHYRLHGQMPARMRMNIYKSF--QKG 426
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK---GKVTSLVAK 305
LVCTD+A+RGLD+ V+ V+ +DFP DYLHR GR R+G+ V+ +
Sbjct: 427 QKEALVCTDIASRGLDISRVNTVVNYDFPFTLQDYLHRVGRVGRVGSGEHCSAVSFVTHA 486
Query: 306 KDVLLADRIEEAIRKN 321
DV L +IE A+RK+
Sbjct: 487 WDVELVQKIETAVRKH 502
>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
Length = 473
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG Q L +++ + TPGR
Sbjct: 135 PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGR 194
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + YLVLDEAD M D GF P IRK L + +P+ QT + S
Sbjct: 195 LIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI-----RPDR---QTCMWS 246
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V+ L + I L S H+ +I +F K LE +++
Sbjct: 247 ATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME- 305
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 306 -----DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 358
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R G KG +L
Sbjct: 359 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITL 411
>gi|283767232|gb|ADB28895.1| PL10A [Macrobrachium nipponense]
Length = 485
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 28/311 (9%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A+VL PTREL+ Q++ ++ S+ AR R +V GG + Q L+ ++V TPGR
Sbjct: 67 PLALVLAPTRELATQIYDESRKFSYRARVRPCVVYGGADVVAQMRDLSRGCHLLVATPGR 126
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I+ G + +K+LVLDEAD M D GF P IR+ ++ P G+ QT++ S
Sbjct: 127 LADMIDRGKVGLDYVKFLVLDEADRMLDMGFEPQIRRI---VEEDNMPPTGRR-QTLMFS 182
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS--- 194
AT K +Q+L + L + + + ++ ++K LL +L +
Sbjct: 183 ATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVA-EDDKRSFLLDILNAAGLD 241
Query: 195 -LSKGNK----------------VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
LS NK +VF T + A++ FL + + HG+ +ER
Sbjct: 242 RLSNANKDNKLAIVALPPQEESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQRER 301
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
+ L F++ G CP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG
Sbjct: 302 EDALRVFRS--GQCPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNL 359
Query: 297 GKVTSLVAKKD 307
G TS K+
Sbjct: 360 GLATSFFNDKN 370
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 19/307 (6%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+RP RA++L PTREL+ QV + S RST++ GG PQ +L N +D++V T
Sbjct: 71 KRPVRALILTPTRELAAQVEDEFREYSEFTDLRSTVIFGGVGANPQIKALRNGVDILVAT 130
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L + ++ LVLDEAD M D GF DI+K L L N+ Q +
Sbjct: 131 PGRLLDLENQNALSLSKVEILVLDEADRMLDMGFLRDIKKILALLPNKR--------QNL 182
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT +K ++KL +E + + + + ++ ++ K + ++++
Sbjct: 183 LFSATFSKEIKKLANEFLHHPVLVEATPENTTVEKIDQTVYRVDKAQ-KTDLIIKL---- 237
Query: 195 LSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+S+GN +V+VF T + + + L + +I++ HG R L+ FK +G
Sbjct: 238 ISEGNWQQVLVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGARTRALSGFK--EGKVR 295
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARGLD+ + HVI F+ P S DY+HR GRT R GA G+ SLV+ +V
Sbjct: 296 VLVATDIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSLDEVGYL 355
Query: 312 DRIEEAI 318
IE+ I
Sbjct: 356 KDIEKLI 362
>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 496
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 16/308 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR ++L PTREL+ QV + + ++ GG QE + D+++ TP
Sbjct: 71 RVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIMRGADVLIATP 130
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQT 133
GR+L + G ++ I+ LV+DEAD M D GF PDI + LVP QT
Sbjct: 131 GRLLDFFDRGKLLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTR----------QT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
+ SATM + +L + + + ++ R + G +K E L ++
Sbjct: 181 LFFSATMPPEITRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHADKRETLRNLIRG 240
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ + N + VFCN + L ++ HG++ R+ +L+ FKN GD
Sbjct: 241 AENLKNAI-VFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKN--GDVAI 297
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LVC+D+AARGLD+ DV HV FD P +S DY+HR GRT R G G ++V + D D
Sbjct: 298 LVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYID 357
Query: 313 RIEEAIRK 320
+I+ I K
Sbjct: 358 QIQSLIGK 365
>gi|373853830|ref|ZP_09596629.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372473357|gb|EHP33368.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 539
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 14/303 (4%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
R R +VL PTREL+ QV + S + +T+V GG Q + L +D++ TPG
Sbjct: 201 RLRCLVLEPTRELALQVEEAFQKYSKYTDLTTTIVYGGVGYGKQREDLQRGVDVLAATPG 260
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L H+E G + I+ L+LDE D M D GF PD+++ + QT+
Sbjct: 261 RLLDHLEQGTLTLDSIEILILDEVDRMLDMGFLPDVKRIVQQCPRER--------QTLFF 312
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ + +L + ++ + H F + S+ K + L+++L+ +
Sbjct: 313 SATLPPELAQLSSWALRDPVQIKIGQRRSPAETVSHAFYPVVASQ-KFDLLIELLKRTEF 371
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K +++F T + + H L Q + H + +ERVE L FK+ G LV
Sbjct: 372 K--SIIIFTRTKMGADRIAHRLQREQHTVGVIHSDRSQRERVEALEGFKS--GKFEVLVA 427
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+ V HVI +D P N+ DY+HR GRT R A G +LV + DV A IE
Sbjct: 428 TDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDVRDARSIE 487
Query: 316 EAI 318
I
Sbjct: 488 RYI 490
>gi|423015941|ref|ZP_17006662.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
gi|338781000|gb|EGP45396.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
Length = 457
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S RS +V GG + PQ+++L +++V TPGR+
Sbjct: 67 RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 126
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 127 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 176
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + K+SG + K A++ +++ S
Sbjct: 177 SATFSNEIRKLGRSYLNQPVEIEVAARNATANTITQIAYKMSG-DQKRAAVVHLVK---S 232
Query: 197 KG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G +V+VF NT + + L + + + HG+ +R++ L FK G+ LV
Sbjct: 233 RGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKA--GELEVLV 290
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARGLD+ V VI +D P N+ DY+HR GRT R GA G+ +L + I
Sbjct: 291 ATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTGDEERFLLDI 350
Query: 315 EEAIRKN 321
E+ I++
Sbjct: 351 EKLIKRE 357
>gi|336118869|ref|YP_004573641.1| ATP-dependent RNA helicase [Microlunatus phosphovorus NM-1]
gi|334686653|dbj|BAK36238.1| putative ATP-dependent RNA helicase [Microlunatus phosphovorus
NM-1]
Length = 505
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 156/297 (52%), Gaps = 14/297 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP P+A+++ PTREL+ QV + + S + R V GG PQ D+L +++VVG
Sbjct: 69 KPGAPQALIVTPTRELALQVSKDLTTASSIRKARVLTVYGGVGYEPQLDALAAGVEVVVG 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L + G++ IK LVLDEAD M D GF PD+ + L A P + QT
Sbjct: 129 TPGRLLDLADRGSLDLSHIKVLVLDEADEMLDLGFLPDVERIL------AKTPELR--QT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRT-STLHKKIASARHDFIKLSGSENKLEALLQVLE 192
+L SATM A+ L + ++R S+ F+ +K E + +VL+
Sbjct: 181 MLFSATMPSAIVALARHHLRHPVNIRAESSDDTTTVPTTAQFVYQVHDLDKPEIVSRVLQ 240
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
N+VMVFC T +++ + L E S HG++ R + L KF++ G
Sbjct: 241 --AENRNRVMVFCRTKRAAQRLADDLAERGFSVTAIHGDLSQVLREKALKKFRS--GAVN 296
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D++ V HVI ++ P + Y+HR GRT R GA G + V DV
Sbjct: 297 VLVATDVAARGIDVEGVTHVINYECPDDDKTYVHRIGRTGRAGASGVAITFVDWADV 353
>gi|333985547|ref|YP_004514757.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333809588|gb|AEG02258.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 431
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 22/313 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KPR R ++L PTREL+ QV+ ++ H F + + GG + PQ + D+V+
Sbjct: 71 KPRPVRVLILTPTRELAMQVYESVRTYGKHLPFFAEAIYGGVSINPQIQKIQRGTDIVIA 130
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L I ++ +++ VLDEAD M D GF DIRK L+P K
Sbjct: 131 TPGRLLDLIHQQHLSLSHVQHFVLDEADRMLDMGFIRDIRKIIALLPAKR---------- 180
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
Q +L SAT + L ++ + + KK A+A D + K E ++L
Sbjct: 181 QNLLFSATYAPEISALSEQILNDPVEIAVA---KKNAAA--DTVSQLVYPIKREYKRELL 235
Query: 192 EPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ GN +V+VF T + + + L ++ I HG+ RV L +FK G
Sbjct: 236 SYLIGNGNWQQVLVFVRTKHGADRLAKQLIKDGIRCAALHGDKSQGARVRALEEFKA--G 293
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+AARGLD+D + HV+ FD P + DY+HR GRT R GA+G+ SLV ++
Sbjct: 294 KITALIATDIAARGLDIDQLPHVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVDPEEA 353
Query: 309 LLADRIEEAIRKN 321
L IE+ ++K
Sbjct: 354 YLLAAIEKVLKKT 366
>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
Length = 410
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 165/318 (51%), Gaps = 23/318 (7%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L +P+R A++L PTREL+ Q+ ++ ++ ++ GG + Q L
Sbjct: 56 ALLEQPQRYFALILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPH 115
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
+++ TPGR++ H+E+ +K+LV+DEAD + + F ++ K L +P + R
Sbjct: 116 IIIATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERR---- 171
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR--HDFIKLSGSENKL 184
T+L SATMTK VQKL + + ST ++ + + + FI + + L
Sbjct: 172 ------TLLFSATMTKKVQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYL 225
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+L L GN M+FC T N++ L + V HG++ +R+ L KF
Sbjct: 226 VHILNELA-----GNSFMIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKF 280
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K ++ L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G G+ + V
Sbjct: 281 KAKNRSI--LISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFV 338
Query: 304 AKKDVLLADRIEEAIRKN 321
+ DV L RIE+ I K
Sbjct: 339 TQYDVELYQRIEQLISKQ 356
>gi|225435708|ref|XP_002283489.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37 [Vitis vinifera]
gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
Length = 612
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 153/308 (49%), Gaps = 11/308 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ AK S+ + + GG + Q L +D++V TPGR
Sbjct: 233 PLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDLERGVDILVATPGR 292
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P G QT+L S
Sbjct: 293 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMD---MPPQGV-RQTMLFS 348
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +QKL + L + + R +F+ + + L LL +
Sbjct: 349 ATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLLHAQRANG 408
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
G + +VF T + +++H+L N HG+ QER + L FK+ G P
Sbjct: 409 VHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKS--GVTPI 466
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + LA
Sbjct: 467 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNSSLAK 526
Query: 313 RIEEAIRK 320
+ E +++
Sbjct: 527 ALSELMQE 534
>gi|347836738|emb|CCD51310.1| hypothetical protein [Botryotinia fuckeliana]
Length = 563
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG Q L +++ + TPGR
Sbjct: 225 PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGR 284
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + YLVLDEAD M D GF P IRK L + +P+ QT + S
Sbjct: 285 LIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI-----RPDR---QTCMWS 336
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V+ L + I L S H+ +I +F K LE +++
Sbjct: 337 ATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME- 395
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 396 -----DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 448
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R G KG +L
Sbjct: 449 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITL 501
>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 455
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 152/317 (47%), Gaps = 21/317 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 75 RARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDRGVDVLIA 134
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 135 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 184
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA----- 186
QT+ SATM ++++ D + + + + G EA
Sbjct: 185 QTLFFSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRK 244
Query: 187 -LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ K ++FCN L + HG++ +R++ L+ F+
Sbjct: 245 TLRALIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFR 304
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG LV +D+AARGLD+ V HV FD P + DY+HR GRT R G +GK ++ +
Sbjct: 305 --DGTLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICS 362
Query: 305 KKDVLLADRIEEAIRKN 321
+D IE I+K
Sbjct: 363 GRDEKALTAIESLIQKE 379
>gi|417954611|ref|ZP_12597643.1| ATP-dependent RNA helicase SrmB [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342814887|gb|EGU49818.1| ATP-dependent RNA helicase SrmB [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 412
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 158/313 (50%), Gaps = 21/313 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP R ++L PTREL+ QV A++++ H + ++GG + + D L D+VV
Sbjct: 72 KPGPARVLILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQDIVVA 131
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++++I I++L+LDEAD M D GFGP + + + R QT
Sbjct: 132 TPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK--------QT 183
Query: 134 VLVSATMT-KAVQKLVDEECQGIAHLRTSTL---HKKIASARHDFIKLSGSENKLEALLQ 189
+L SAT+ K V+ + + A + KKIA H + +KLE L +
Sbjct: 184 LLFSATLEGKGVEGFTADLLKDPAEVDAEPSRRERKKIAQWYH---RADDMNHKLELLKK 240
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ + + +VF T + L + QI GE+P R + +F+ DG
Sbjct: 241 II---TDQAERSIVFLKTRERLGELRAELEKAQIPCAWIQGEMPQDRRNNAIARFR--DG 295
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
L+ TD+AARG+DL DV HVI +D P ++ YLHR GRTAR G KG SLV D
Sbjct: 296 TVNVLLATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQ 355
Query: 309 LLADRIEEAIRKN 321
+ DR+ +++
Sbjct: 356 PMLDRVARYVKEE 368
>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 507
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 21/316 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + H++ ++ GG Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE------NKLE 185
QT+ SATM ++++ + G + + + I+++ + +K
Sbjct: 180 QTLFYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADKRA 239
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L ++ ++FCN V L ++ + HG++ +R + L+ F+
Sbjct: 240 VLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFR 299
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
DG LV +D+AARGLD+ V HV FD P + DY+HR GRT R G KGK S+
Sbjct: 300 --DGTLHLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKGKAFSIAV 357
Query: 305 KKDVLLADRIEEAIRK 320
D IE +++
Sbjct: 358 PSDEKYLAAIESLVKQ 373
>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 506
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 21/304 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + +++ GG + Q+ +L +D+++ TP
Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L E G ++ + LV+DEAD M D GF PDI L P + QT+L
Sbjct: 145 GRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKL------PTSR--QTLL 196
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM A++KL D + S I++S +K + L +L
Sbjct: 197 FSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVS-PRSKKKKLCDMLR--A 253
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + ++FCN + R + L + S HG++ ER L +FKN G LV
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKN--GQISVLV 311
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
+D+AARGLD+ + HV FD P + DY+HR GRT R GA G+ + V D
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD------- 364
Query: 315 EEAI 318
EEAI
Sbjct: 365 EEAI 368
>gi|377819861|ref|YP_004976232.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357934696|gb|AET88255.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 528
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 27/313 (8%)
Query: 16 RRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+RP RA++L PTREL+ QV ++ + + +ST++ GG + PQ D+L +D+VV T
Sbjct: 78 KRPVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVDIVVAT 137
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L H++ + ++ LVLDEAD M D GF DI++ L L + Q +
Sbjct: 138 PGRLLDHMQQKTIDVSQLEILVLDEADRMLDMGFIHDIKRVLAKLPAK--------RQNL 189
Query: 135 LVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
L SAT + ++ L D A + R +T + + H + + K E L ++
Sbjct: 190 LFSATFSDEIKALADSLLDSPALIEVARRNTTAETVEQKIHPVDR----DRKRELLTHLI 245
Query: 192 EPSLSKGN---KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+GN +V+VF T + + + L ++ IS + HG R L +FK E
Sbjct: 246 -----RGNNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKAE- 299
Query: 249 GDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
LV TD+AARG+D+D + HV+ FD P DY+HR GRT R GA+G+ SLV +
Sbjct: 300 -TLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDE 358
Query: 308 VLLADRIEEAIRK 320
L IE I++
Sbjct: 359 HQLLRDIERLIKR 371
>gi|160380700|sp|A6SFW7.2|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
Length = 514
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG Q L +++ + TPGR
Sbjct: 176 PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGR 235
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + YLVLDEAD M D GF P IRK L + +P+ QT + S
Sbjct: 236 LIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI-----RPDR---QTCMWS 287
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V+ L + I L S H+ +I +F K LE +++
Sbjct: 288 ATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME- 346
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 347 -----DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 399
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R G KG +L
Sbjct: 400 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITL 452
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 159/304 (52%), Gaps = 15/304 (4%)
Query: 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ 80
++L PTREL+ Q+ + ++ + + GG + PQ +L+ ++V TPGR+L
Sbjct: 161 LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLD 220
Query: 81 HIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139
H+E+ +KY+VLDEAD + D FGP + K L L +G T L SAT
Sbjct: 221 HLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPR-------EGRHTYLYSAT 273
Query: 140 MTKAVQKLVDEECQGIAHLR-TSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
M+ V+ L Q + +S+ H+ +++ +I L L L+ +L ++ G
Sbjct: 274 MSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDL-YLIHLLNDNI--G 330
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ ++F T+N ++ + L + HG++ R+ LNKFK + D LV TD
Sbjct: 331 HPTIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDI--LVATD 388
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ VD V+ FD P +S Y+HR GRTAR G GK S V + D+ + RIE A
Sbjct: 389 VAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIENA 448
Query: 318 IRKN 321
+ K
Sbjct: 449 LGKQ 452
>gi|403332222|gb|EJY65111.1| DEAD box helicase [Oxytricha trifallax]
Length = 535
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVA-KSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
L P +PR++VL P+REL+ QV + K ++ + + G R + D L N +D+
Sbjct: 160 LTMPNKPRSIVLVPSRELAMQVLNSSLKPFTYEVPLKFFSIYSGQSHRIETDKLENGVDV 219
Query: 71 VVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
+V T R L + DG V+ ++ LV+DE DT D G IR + A + G
Sbjct: 220 LVSTLDRYL-YRRDGEKVFMTNVSSLVIDELDTFLDSGHEKKIRDIIEQFLTGADR-QGI 277
Query: 130 GFQTVLVSATMTKAVQKLVDEECQ---GIAHLRTSTLHKKIASARHDFIKLSGSEN--KL 184
Q + +ATMT + L+ + Q A L H +++ +H+FI+L+ + L
Sbjct: 278 KKQIIFSTATMTSQMDGLLKDYFQDDLNFAKLVEKKTHMNLSNLKHEFIQLADFDKIKPL 337
Query: 185 EALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
+ L++ + K + ++FCN++ S+RA++H L ++ T + HGE+P + R N +K
Sbjct: 338 KLLVKEYKQYAQKNETQCIIFCNSVQSARAIEHALAQDNFKTCSLHGEIPPKMRQINFDK 397
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ + LV TDLA+RGLD+ + HVI FDFP ++ DYLHR GR R G G V SL
Sbjct: 398 FMNKKAEI--LVATDLASRGLDVPSISHVINFDFPKSTSDYLHRAGRAGRAGRPGFVMSL 455
Query: 303 VAKKD 307
V +KD
Sbjct: 456 VREKD 460
>gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 451
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 159/308 (51%), Gaps = 20/308 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
PRA++L PTREL Q+ + A+ + H F + GG Q+++L +D+V+GTPGR
Sbjct: 75 PRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKNALKEGVDIVIGTPGR 134
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIR---KFLVPLKNRASKPNGQGFQTV 134
++ +++ +I+ LV+DEAD MFD GF D+R + L P R Q +
Sbjct: 135 LIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFDER---------QNL 185
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
+ SAT+ + V +L E + T + A I + K LL +L
Sbjct: 186 MFSATLNQRVMELA-YEFMNVPEKVAVTPEQMTAERVEQVIYHVSRKEKFPLLLGLLR-- 242
Query: 195 LSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + M+F NT + + LN N G+V ++R+ L FK+ G P
Sbjct: 243 -KEGMERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKS--GKLPI 299
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
++ TD+A+RGL +D V HVI +D P ++ DY+HR GRTAR GA+GK SL + L +
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGALYLE 359
Query: 313 RIEEAIRK 320
I E I++
Sbjct: 360 DIHEYIKE 367
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 159/304 (52%), Gaps = 15/304 (4%)
Query: 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ 80
++L PTREL+ Q+ + ++ + + GG + PQ +L+ ++V TPGR+L
Sbjct: 161 LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPHIIVATPGRLLD 220
Query: 81 HIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139
H+E+ +KY+VLDEAD + D FGP + K L L +G T L SAT
Sbjct: 221 HLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPR-------EGRHTYLFSAT 273
Query: 140 MTKAVQKLVDEECQGIAHLR-TSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
M+ V+ L Q + +S+ H+ +++ +I L L L+ +L ++ G
Sbjct: 274 MSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDL-YLIHLLNDNI--G 330
Query: 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258
+ ++F T+N ++ + L + HG++ R+ LNKFK + D LV TD
Sbjct: 331 HPTIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDI--LVATD 388
Query: 259 LAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
+AARGLD+ VD V+ FD P +S Y+HR GRTAR G GK S V + D+ + RIE A
Sbjct: 389 VAARGLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIWLRIENA 448
Query: 318 IRKN 321
+ K
Sbjct: 449 LGKQ 452
>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 458
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 18/309 (5%)
Query: 14 KPRRPR--AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
KP+R + ++VL PTREL+ QV AK+ + + RS V GG +RPQ L +D++
Sbjct: 91 KPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQGGVDIL 150
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQG 130
V TPGR+L I + + ++K LVLDEAD M D GF DI+K + L KNR
Sbjct: 151 VATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNR-------- 202
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
Q ++ SAT + ++KL ++ S ++ + H + K++ L +
Sbjct: 203 -QNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEH-LVHPCDMARKVDLLCHL 260
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ +K +V+VF T + + V L + HG R L FKN GD
Sbjct: 261 IK--TNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKN--GD 316
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARG+D+ + +VI D P + DY+HR GRT R G G SLVA ++ L
Sbjct: 317 IKILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEAL 376
Query: 310 LADRIEEAI 318
L IE+ I
Sbjct: 377 LLKAIEKFI 385
>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|442570094|sp|Q1DP69.2|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
Silveira]
gi|392867306|gb|EJB11300.1| ATP-dependent RNA helicase DBP2 [Coccidioides immitis RS]
Length = 545
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 202 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGR 261
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 262 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTCMWS 313
Query: 138 ATMTKAVQKLVDEECQ-------GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + G L + +I DF K N LE ++
Sbjct: 314 ATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMD- 372
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
K +K+++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 373 -----DKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 425
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +L
Sbjct: 426 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITL 478
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 162/307 (52%), Gaps = 15/307 (4%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM-VSGGGRLRPQEDSLNNPIDMVVGT 74
+ P+A+VL PTREL+ QV + + H + S + V GG Q +L +D++VGT
Sbjct: 86 KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSALRRGVDVIVGT 145
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGRI+ H++ G + ++K+LVLDEAD M GF D+ L A P+ + Q
Sbjct: 146 PGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETIL------ADTPSTK--QVA 197
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SATM ++++ + + T A+ ++ +S + K++AL ++LE
Sbjct: 198 LFSATMPAQIRRISAQYLNDPEEITVKTKTTTSANITQRYLIVS-YQQKIDALTRILEVE 256
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+G ++VF T N + V L + +G++ +R +N+ K+ G L
Sbjct: 257 NFEG--MIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKS--GKLDIL 312
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD++ + HV+ +D P+++ Y+HR GRT R G G S V ++ +
Sbjct: 313 VATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRERRMLTA 372
Query: 314 IEEAIRK 320
IE+A R+
Sbjct: 373 IEKATRQ 379
>gi|431803785|ref|YP_007230688.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430794550|gb|AGA74745.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 440
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 14/305 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++Q + + S +S +V+GG + Q L D+++GTPGR+
Sbjct: 73 RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTPGRL 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+ + GN+ ++ L+LDEAD M D GF D+ + +NR QT+L SA
Sbjct: 133 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRQ--------QTLLFSA 184
Query: 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
T A++ ++ + + HL +++ + R I ++K E ++Q L +
Sbjct: 185 TTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHK-EQIVQWLLAN-ET 242
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+K ++F NT + + L + HGE ++R L++FK G LV T
Sbjct: 243 FDKAIIFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLALDRFKQ--GSSKVLVAT 300
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+D +D VI FD P + +Y+HR GRT R G +G SL+ D L IE
Sbjct: 301 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 360
Query: 317 AIRKN 321
+++
Sbjct: 361 YLKQQ 365
>gi|390348110|ref|XP_001199247.2| PREDICTED: probable ATP-dependent RNA helicase DDX28-like
[Strongylocentrotus purpuratus]
Length = 568
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 164/319 (51%), Gaps = 13/319 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+P PR VVL P EL QV+ VAK ++ A + G L+ E L+ D+++
Sbjct: 222 EPGLPRGVVLVPVGELVHQVWEVAKVLADSAGLSVQYIDGETSLKSLEKRLSLSTDIIIS 281
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL---KNRASKPNGQG 130
TPG I+ + G + ++V+DE+DTM D F K L + + +A K G
Sbjct: 282 TPGPIINAVRQGYGSLDCVSHIVIDESDTMLDDSFIQQTLKILKRVNVGEGKACKVTAPG 341
Query: 131 -FQTVLVSATMTKAVQKLVDE--ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
Q +V ATM + ++ E + + + T +H+ + F++L SE+K +
Sbjct: 342 EAQLTMVGATMPRKATNILAEIIPPENLEVISTPHVHRIMPHVHQKFLRLH-SEDKALKI 400
Query: 188 LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247
L++++ + MVFCN ++ + H L EN I + H ++ + R + FK+
Sbjct: 401 LELVKREQKRRVPTMVFCNMASTCDWLAHILTENGIPALRLHSKMGGKSRSGVMEAFKS- 459
Query: 248 DGDCPTLVCTDLAARGLD-LDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK---VTSLV 303
G+ LVC+D+A+RG+D + V HV+ FDFP DY+HR GR R+G++G +V
Sbjct: 460 -GEAHILVCSDIASRGVDTVQVQHVVNFDFPPFMSDYIHRAGRVGRVGSQGSGHVPHFVV 518
Query: 304 AKKDVLLADRIEEAIRKNE 322
K DV L ++IE A+R E
Sbjct: 519 HKWDVELVNKIERAVRTRE 537
>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
[Desulfurispirillum indicum S5]
gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
S5]
Length = 457
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 157/308 (50%), Gaps = 16/308 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ H +S ++ GG + PQ +L +D+VV TP
Sbjct: 72 RHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANLRRGVDIVVATP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTV 134
GR+L H++ ++ +++LVLDEAD M D GF DIRK L L K R Q +
Sbjct: 132 GRLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKER---------QNL 182
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT ++ + +L + + + A + L E K E L +++ S
Sbjct: 183 LFSATFSREITELASSFMKDPVQVEVAR-RNTAAETVDQVVHLVDRERKRELLSKLI--S 239
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K +V+VF T + + + L ++ I + HG R + L FK G L
Sbjct: 240 EGKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKK--GQVRVL 297
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
V TD+AARGLD+D + HV+ F+ P DY+HR GRT R G GK SLV + L
Sbjct: 298 VATDIAARGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEKQLLKG 357
Query: 314 IEEAIRKN 321
IE ++++
Sbjct: 358 IEGLLKRD 365
>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 542
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 199 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 259 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPD---RQTCMWS 310
Query: 138 ATMTKAVQKLVDEECQ-------GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + G L + +I DF K N LE ++
Sbjct: 311 ATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMD- 369
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
K +K+++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 370 -----DKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 422
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +L
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITL 475
>gi|339488772|ref|YP_004703300.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338839615|gb|AEJ14420.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida S16]
Length = 440
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 14/305 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++Q + + S +S +V+GG + Q L D+++GTPGR+
Sbjct: 73 RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTPGRL 132
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+ + GN+ ++ L+LDEAD M D GF D+ + +NR QT+L SA
Sbjct: 133 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRQ--------QTLLFSA 184
Query: 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
T A++ ++ + + HL +++ + R I ++K E ++Q L +
Sbjct: 185 TTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHK-EQIVQWLLAN-ET 242
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+K ++F NT + + L + HGE ++R L++FK G LV T
Sbjct: 243 FDKAIIFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLALDRFKQ--GSSKVLVAT 300
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+D +D VI FD P + +Y+HR GRT R G +G SL+ D L IE
Sbjct: 301 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 360
Query: 317 AIRKN 321
+++
Sbjct: 361 YLKQQ 365
>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
Length = 471
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 159/314 (50%), Gaps = 21/314 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + + ++ GG Q+ L+ D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLDRGTDVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 129 TPGRLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTR---------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALL 188
QT+ SATM +Q+L + Q A + RTS+ + I+ H G + + A+L
Sbjct: 179 QTLFFSATMPPEIQRLTETFLQNPARVEVARTSSTSENIS---HYLRAAEGKDYEKRAVL 235
Query: 189 QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248
+ L N +VFCN + L + S + HG++ + R+ L+ FK
Sbjct: 236 RELLEGAEDLNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKK-- 293
Query: 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
G L+ +D+AARGLD+ +V HV +D P ++ DY+HR GRT R G G +LV+ D
Sbjct: 294 GTIKLLIASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSD 353
Query: 308 VLLADRIEEAIRKN 321
+ IE+ I ++
Sbjct: 354 QKYLESIEKLIAQD 367
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 151/317 (47%), Gaps = 21/317 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VLCPTREL+ QV + + H + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG------SENKLE 185
QT+ SATM ++++ D A + + + + + G K +
Sbjct: 180 QTLFFSATMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRK 239
Query: 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ K ++FCN L + HG++ R L F+
Sbjct: 240 VLRALIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFR 299
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
+G LV +D+AARGLD+ V HV FD P + DY+HR GRT R G +GK +L
Sbjct: 300 --EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCT 357
Query: 305 KKDVLLADRIEEAIRKN 321
+D + IE+ I+K
Sbjct: 358 ARDEKALEAIEKLIQKE 374
>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 445
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 154/305 (50%), Gaps = 20/305 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV + + + S M+ GG + PQ L + +D++V TPGR+
Sbjct: 79 RALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQITRLKSRVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + I+ LVLDEAD M D GF DI+K L L + Q +L SA
Sbjct: 139 LDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLPKQR--------QNLLFSA 190
Query: 139 TMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D + I R + + K+ H + E K L +++
Sbjct: 191 TFSDEIRALADSLLNQPALIEAARRNAIADKVTHVVHPVDR----ERKRHLLAHLIK--Q 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
++V+VF T + + + FL + I + HG R L KFK G LV
Sbjct: 245 HGWSQVLVFTRTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKT--GSLQVLV 302
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+ ++ HV+ F+ P DY+HR GRT R GA+G SLV ++ L I
Sbjct: 303 ATDIAARGIDINELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELKLLTAI 362
Query: 315 EEAIR 319
E+ I+
Sbjct: 363 EKLIK 367
>gi|388568067|ref|ZP_10154491.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenophaga
sp. PBC]
gi|388264699|gb|EIK90265.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenophaga
sp. PBC]
Length = 588
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 20/290 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA+VL PTREL+ QV + H ST+V GG + PQ D++ +D++V TPGR+
Sbjct: 79 RALVLTPTRELAAQVEESVRVYGKHVDLSSTVVFGGVGMNPQIDAMKRGVDILVATPGRL 138
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L + G + +++ LVLDEAD M D GF D++K L L Q Q++L SA
Sbjct: 139 LDLQQQGFLDLSNVQILVLDEADRMLDMGFIHDVKKVLALLP--------QSKQSLLFSA 190
Query: 139 TMTKAVQKLVDEECQGIAHLRTS---TLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L + H++ + T ++I H G K L+ +++ L
Sbjct: 191 TFSDEIRDLAQGLLKDPQHIQVTPRNTTVQRITQVIHPV----GRGKKKALLVYIIQ--L 244
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
++V+VF T + V +LN+N I+ + HG R + L FK+ G+ LV
Sbjct: 245 HNWSQVLVFTRTKFGANNVADYLNKNGITAMALHGNKSQGARTQALAGFKS--GEIRALV 302
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
TD+AARG+D+D + HV+ +D P DY+HR GRT R G +G+ +LV+
Sbjct: 303 ATDIAARGIDIDELPHVVNYDIPNICEDYVHRIGRTGRAGREGQAVNLVS 352
>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
Length = 481
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 151/308 (49%), Gaps = 24/308 (7%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ V G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT+ + V+KL H+ H ++ G E KL L V ++
Sbjct: 184 SATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEV-GEEEKLSLLKDV--TTIE 240
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDGDC 251
+ ++FC T + VDH Q+ VNY HG + ++R E ++ F+ G
Sbjct: 241 NPDSCIIFCRTQEN---VDHVY--RQLKRVNYPCDKIHGGMVQEDRFEVMDDFRK--GKF 293
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G KGK + + +
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRF 353
Query: 311 ADRIEEAI 318
+ IE I
Sbjct: 354 LEEIETYI 361
>gi|403417986|emb|CCM04686.1| predicted protein [Fibroporia radiculosa]
Length = 755
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 149/281 (53%), Gaps = 11/281 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTREL+ Q+ + +++ R+T + GG PQ L +++V+ TPGR
Sbjct: 401 PIALILAPTRELAVQIQQECTKFGSNSKIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGR 460
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + YLV+DEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 461 LIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVGQI-----RPDR---QTLMFS 512
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K VQKL ++ + + ++ +++ K L++ L+ +
Sbjct: 513 ATWPKDVQKLANDFLKDFIQVNIGSMELTANHNIAQIVEVCSDFEKRSKLIKHLDQISQE 572
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
KV++F T + + +L ++ + HG+ +ER L++FK G P L+ T
Sbjct: 573 NAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLSEFKA--GRSPILIAT 630
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
D+A+RGLD+ DV +VI +DFP N DY+HR GRT R G KG
Sbjct: 631 DVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKG 671
>gi|423416636|ref|ZP_17393725.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG3X2-1]
gi|401110020|gb|EJQ17936.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG3X2-1]
Length = 481
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 157/310 (50%), Gaps = 28/310 (9%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ + G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE--PS 194
SAT+ + V+KL + H+ K A D I+ + E + E L +L+ +
Sbjct: 184 SATLPEDVEKLSRKYMDSPTHIEI-----KAAGITTDKIEHTLFETREEEKLSLLKDVTT 238
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDG 249
+ + ++FC T + VDH Q+ VNY HG + ++R E ++ F+ G
Sbjct: 239 IENPDSCIIFCRTQEN---VDHVF--KQLDRVNYPCDKIHGGMVQEDRFEVMDDFRK--G 291
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G KGK + + +
Sbjct: 292 KFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEN 351
Query: 309 LLADRIEEAI 318
+ IEE I
Sbjct: 352 RFLEEIEEYI 361
>gi|375281958|gb|AFA45124.1| vasa [Gobiocypris rarus]
Length = 685
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 154/289 (53%), Gaps = 11/289 (3%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P A+++ PTREL Q++ A+ ++ R +V GG + +++ GTP
Sbjct: 323 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCGTP 382
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + ++YLVLDEAD M D GF PD+RK L P + QT++
Sbjct: 383 GRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRK----LVGSPGIPPKEDRQTLM 438
Query: 136 VSATMTKAVQKLVDEECQ-GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
SAT + +Q+L E + L + + I++ +K E LL++L+ +
Sbjct: 439 FSATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTVIQVD-QFSKREQLLELLKTT 497
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
++ + MVF T S+ + FL + +I+T + HG+ +ER + L+ F+ G CP L
Sbjct: 498 GTE--RTMVFVETKRSADFIATFLCQEKIATTSIHGDREQREREKALSDFRT--GQCPVL 553
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
V T +AARGLD++ V HV+ FD P N +Y+HR GRT R G G+ S
Sbjct: 554 VATSVAARGLDIEHVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSF 602
>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 452
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 163/306 (53%), Gaps = 16/306 (5%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++Q + + S ++ +V+GG + Q L D+++GTPGR+
Sbjct: 86 RALILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPDVLIGTPGRL 145
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+ + GN+ ++ ++LDEAD M D GF D+ + +NR QT+L SA
Sbjct: 146 LEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENRE--------QTLLFSA 197
Query: 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
T A++ ++ + + HL +++ + R I ++K EA++Q L + K
Sbjct: 198 TTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQHK-EAIVQWLLAN-EK 255
Query: 198 GNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+K ++F NT + + R H + ++ + HGE ++R + +FK G LV
Sbjct: 256 FDKAIIFTNTRVLADRIYGHLVAKD-VKAFVLHGEKDQKDRKLAIERFKQ--GSSKVLVA 312
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+AARGLD+D +D VI FD P + +Y+HR GRT R G +G SL+ D L IE
Sbjct: 313 TDVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIE 372
Query: 316 EAIRKN 321
+++
Sbjct: 373 RYLKQQ 378
>gi|408375064|ref|ZP_11172741.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407765040|gb|EKF73500.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 460
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 173/323 (53%), Gaps = 24/323 (7%)
Query: 8 MLGVLMKPRRPR----AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 63
+L LM+ RPR A++L PTREL++Q + ++++ + ++ +V+GG + Q
Sbjct: 60 LLHQLMQHSRPRTDTRALILLPTRELAQQTLKQVEALARYTFIKAELVTGGEDFKVQAAR 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
+ ++++GTPGR+++H+E GN+ D++ L+LDE+D M D GFG D+ + +
Sbjct: 120 MRKNPEILIGTPGRLIEHLEAGNLRLQDLEVLILDESDRMLDMGFGDDVLRLAGECR--- 176
Query: 124 SKPNGQGFQTVLVSAT-MTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN 182
+ QT+L SAT A+QK+V+ + L ++ + I +
Sbjct: 177 -----EARQTLLFSATGGGNAMQKMVESVLRQPKSLILDSVRDLNEAVVQQIITADNVAH 231
Query: 183 KLEALLQVL---EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
K E L+Q L EP NK ++F NT + + L N ++ HG+ ++R
Sbjct: 232 K-ERLVQWLLAHEPF----NKAVIFTNTREQADRLGGILRTNALTVFTLHGDKDQKDRKL 286
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
+++ K+ G LV TD+AARG+ +D +D VI FD P + +Y+HR GRT R+G +G
Sbjct: 287 AMDRLKS--GGVRVLVATDVAARGIHVDGLDLVINFDMPRSGDEYVHRIGRTGRVGGEGT 344
Query: 299 VTSLVAKKDVLLADRIEEAIRKN 321
SL+A + L I+ +R+N
Sbjct: 345 AISLIAAHEWNLMASIQRYLRQN 367
>gi|367024527|ref|XP_003661548.1| hypothetical protein MYCTH_2301066 [Myceliophthora thermophila ATCC
42464]
gi|347008816|gb|AEO56303.1| hypothetical protein MYCTH_2301066 [Myceliophthora thermophila ATCC
42464]
Length = 657
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 151/306 (49%), Gaps = 16/306 (5%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
+A G + P ++L PTREL Q++ A+ ++ + R +V GG + Q +
Sbjct: 252 QAGGGYRQRKAYPTTLILAPTRELVSQIYEEARKFAYRSWVRPCVVYGGADIGSQLRQIE 311
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
D++V TPGR++ IE G + +IKYLVLDEAD M D GF P IR+ ++
Sbjct: 312 RGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRI---VQGEDMP 368
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSEN 182
P GQ QT++ SAT + +Q L + L R + + I I+ +
Sbjct: 369 PTGQ-RQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQK----IEYVEDVD 423
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
K LL +L G ++F T + ++ FL + HG+ +ER L
Sbjct: 424 KRSVLLDILH--THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALE 481
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
F+N G CP LV T +AARGLD+ +V HVI +D P + DY+HR GRT R G G T+
Sbjct: 482 LFRN--GKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATA 539
Query: 302 LVAKKD 307
+ +
Sbjct: 540 FFNRGN 545
>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase [Chelativorans sp. BNC1]
gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
Length = 477
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 153/313 (48%), Gaps = 18/313 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + R ++ GG QE L D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLERGADVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ ++ LV+DEAD M D GF PDI + L+P
Sbjct: 129 TPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTR---------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE--NKLEALLQ 189
QT+ SATM + KL ++ QG + S + +K SGS+ K E L
Sbjct: 179 QTLFFSATMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVK-SGSKPWAKREKLRD 237
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
++ + ++FCN + L ++ HG++ + R+ L F+ G
Sbjct: 238 LIRAEGDELKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRK--G 295
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV +D+AARGLD+ DV HV FD P +S DY+HR GRT R G GK ++V + D
Sbjct: 296 KLKLLVASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIVTRADR 355
Query: 309 LLADRIEEAIRKN 321
D IE+ I ++
Sbjct: 356 KYVDGIEKLIGQD 368
>gi|432871593|ref|XP_004071991.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Oryzias
latipes]
Length = 610
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 157/299 (52%), Gaps = 18/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA +R +ST V GG PQ L +++ + TPGR
Sbjct: 167 PICLVLAPTRELAQQVQQVACDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGR 226
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + + +P+ QT++ S
Sbjct: 227 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDR---QTLMWS 278
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLEPS 194
AT K V++L ++ + + L SA H+ +++ K + L+Q++E
Sbjct: 279 ATWPKEVRQLAEDFLKEYVQINIGALE---LSANHNILQIVDVCTESEKDQKLIQLMEEI 335
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
++ K NK ++F T + + + + HG+ ER L++F++ G P
Sbjct: 336 MAEKENKTIIFVETKKRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRS--GKAPV 393
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR KG + +V A
Sbjct: 394 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTNKGTAYTFFTPGNVRQA 452
>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
Length = 483
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 159/309 (51%), Gaps = 20/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R RA++L PTREL+ QV ++ + + RST++ GG + PQ D+L +D+VV TP
Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L H++ + + LVLDEAD M D GF DI++ L L + Q +L
Sbjct: 135 GRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPAKR--------QNLL 186
Query: 136 VSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192
SAT + ++ L D A + R +T + IA H + + K E L ++
Sbjct: 187 FSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDR----DRKREMLTHLIR 242
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+V+VF T + + + L ++ IS + HG R L++FK G
Sbjct: 243 E--HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKA--GTLQ 298
Query: 253 TLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
LV TD+AARG+D+D + HV+ ++ P DY+HR GRT R GA G+ SLV + L
Sbjct: 299 VLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPLL 358
Query: 312 DRIEEAIRK 320
IE I++
Sbjct: 359 RDIERLIKR 367
>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2255]
gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
Length = 461
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 157/316 (49%), Gaps = 21/316 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR++VL PTREL+ QV + + + + ++ GG + Q+ ++ +D+++
Sbjct: 70 RARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDRGVDVLIA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L H E G ++ I+ +V+DEAD M D GF PDI + L P
Sbjct: 130 TPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPFTR---------- 179
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEA----- 186
QT+ SATM + ++ E Q + + + + I KLEA
Sbjct: 180 QTLFFSATMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRD 239
Query: 187 -LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
L +++ K +VFCN V L ++ S HG++ + R+E L FK
Sbjct: 240 LLRTIIKDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFK 299
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
N D LV +D+AARGLD+ V HV FD P+++ DY+HR GRT R G KG L
Sbjct: 300 N--NDITLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCL 357
Query: 305 KKDVLLADRIEEAIRK 320
++ D+IEE +++
Sbjct: 358 PHEIKHLDKIEELVKQ 373
>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
Length = 430
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 16/305 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PR ++L PTREL+ Q+ ++ ++ + ++ +++GG D L + D++V
Sbjct: 82 KPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVA 141
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L++IE+ +I+ LVLDEAD M D GF I + + + R QT
Sbjct: 142 TPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRK--------QT 193
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN-KLEALLQVLE 192
+L SAT+ +L EE S +K + H ++ L+ N KL L+ L+
Sbjct: 194 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 253
Query: 193 PSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+G + +VF N + + + L ++ V G++P +R + + +FK G+
Sbjct: 254 ---QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKK--GEV 308
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ D+ HVI FD P Y+HR GRT R G KG SLV D+ +
Sbjct: 309 KVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGV 368
Query: 311 ADRIE 315
+IE
Sbjct: 369 IGKIE 373
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 21/309 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTM-VSGGGRLRPQEDSLNNPIDMVVGTPG 76
P+ +VL PTREL+ QV + + H + + + V GG PQ L +VVGTPG
Sbjct: 107 PQILVLAPTRELALQVAEAFTTYAKHIKGVTVLPVYGGAPYGPQLSGLRRGAQVVVGTPG 166
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R++ H++ G++ D++Y+VLDEAD M GF ++ + L ++ P+ + QT L
Sbjct: 167 RVIDHLQKGSLDLSDLQYMVLDEADEMLRMGFAEEVDQIL------SATPDQK--QTALF 218
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SATM +A+Q++ + + + + + R F++++ + KLEA+ ++LE
Sbjct: 219 SATMPRAIQRISGKYLNDPVEVTVAAKNTTAGNIRQRFLQVT-HQWKLEAMTRILETEEH 277
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER---VENLNKFKNEDGDCPT 253
G V+ F T N++ + LN G+V +R VENL G
Sbjct: 278 DG--VIAFVRTRNATEELTTKLNARGFRAAAISGDVAQNQREKTVENLRA-----GRIDI 330
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD++ + HVI +D P ++ Y+HR GRT R G G + ++ L
Sbjct: 331 LVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAVLFMTPREKYLLR 390
Query: 313 RIEEAIRKN 321
IE+A R+
Sbjct: 391 SIEKATRQT 399
>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 603
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 156/313 (49%), Gaps = 30/313 (9%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+K R +AVV+ PTREL+ Q + +S +S + GG Q L D++V
Sbjct: 247 IKKRCIKAVVVSPTRELAMQTQEQMEHVSSLLGLKSICIYGGASKDDQRALLRRGADVIV 306
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR+ + DG + D+K+ VLDEAD M D+GF DI+ L + R ++ Q
Sbjct: 307 ATPGRLKDFMMDGTISLQDVKFAVLDEADRMLDKGFEEDIKMILGDMPAREAR------Q 360
Query: 133 TVLVSATMTKAVQKLVD----------------EECQGIAHLRTSTLHKKIASARHDFIK 176
TV+ +AT +V+KL + E G L+ +T + R + +
Sbjct: 361 TVMFTATWPASVRKLAESFMVDPVKVTIGSSGKETANGAVELQANTR----ITQRVEVVD 416
Query: 177 LSGSENKLEALLQVLEPSLSKGN-KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
E +L LL+ + + S+ N +++VFC + V+ FL + I HG++ +
Sbjct: 417 PRAKEQRLLQLLKQWQATASQKNDRILVFCLYKKEATRVEAFLQQRGIRVGGIHGDLRQE 476
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
+R +L FK G P LV TD+AARGLD+ +V VI FPL DY+HR GRT R G
Sbjct: 477 QRTRSLEAFKA--GTTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAG 534
Query: 295 AKGKVTSLVAKKD 307
G+ +L + D
Sbjct: 535 KTGEAITLFTEHD 547
>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
Length = 516
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A+++ PTREL Q+F A+ S++ R +V GG + Q + M+VGTP
Sbjct: 153 QEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIEKGAHMIVGTP 212
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L I G + +K+L+LDEAD M D GF DI+K + N P Q QT++
Sbjct: 213 GRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLM----NELGMPPKQERQTLM 268
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL---SGSENKLEALLQVLE 192
SAT + VQ L E + ++ A D ++ G +K + L+ +L
Sbjct: 269 FSATFPEEVQSLARELLNDYLFVTVG----RVGGANTDIEQMVYNVGQFDKRQKLIDLL- 323
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ +V+VF ++ + FL+++++ T + HG+ +ER LN FK+ G P
Sbjct: 324 -NACPNERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKS--GRKP 380
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
LV T +AARGLD+ V HV+ +D P +Y+HR GRT R G GK T+
Sbjct: 381 ILVATSVAARGLDIPGVMHVVNYDMPKEIDEYVHRIGRTGRCGNMGKATTF 431
>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
Length = 670
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 153/295 (51%), Gaps = 10/295 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +V+ PTREL+ Q++ AK S+ + R +V GG ++ Q L+ +++ TPGR
Sbjct: 273 PTGLVIAPTRELASQIYDEAKKFSYRSHVRPCVVYGGAAIKGQLSDLSRGCNVIFATPGR 332
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ I+ G + ++LVLDEAD M D GF P IR+ + + PNG QT++ S
Sbjct: 333 LIDIIDRGKLKLDCCRFLVLDEADRMLDMGFEPQIREII-----QRYMPNGDNRQTLMFS 387
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q L + + L + + + + +K ALL ++ + +
Sbjct: 388 ATFPPQIQNLAKDFLKSYIFLSVGRVGSTSENITQSLVWVE-EVDKRNALLDFIDFT-KE 445
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
N +VF T + +++ FL + S + HG+ ER L F++ G P +V T
Sbjct: 446 DNLTLVFVETKRGADSLEEFLYNREFSVSSIHGDRTQDERERALKNFRS--GKTPIMVAT 503
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
+AARGLD+ +V HVI +D P + +Y+HR GRT R+G GK TS K+ LA
Sbjct: 504 AVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRVGNLGKATSFFNDKNKNLA 558
>gi|423618846|ref|ZP_17594679.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD115]
gi|401252322|gb|EJR58583.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD115]
Length = 481
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 157/310 (50%), Gaps = 28/310 (9%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
+P+A+VL PTREL+ QV +I R ++ V G Q+ L +VVGTPG
Sbjct: 72 KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L HIE G + +KYLV+DEAD M + GF + + L + T+L
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKR--------MTMLF 183
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE--PS 194
SAT+ + V+KL H+ K A D I+ + E + E L +L+ +
Sbjct: 184 SATLPEDVEKLSRTYMDSPTHIEI-----KAAGITTDKIEHTLFETREEEKLSLLKDVTT 238
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-----HGEVPAQERVENLNKFKNEDG 249
+ + ++FC T + VDH Q++ VNY HG + ++R E ++ F+ G
Sbjct: 239 IENPDSCIIFCRTQEN---VDHVF--RQLNRVNYPCDKIHGGMVQEDRFEVMDDFRK--G 291
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARG+D+D + HVI +D PL Y+HRTGRT R G KGK + + +
Sbjct: 292 KFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEN 351
Query: 309 LLADRIEEAI 318
+ IEE I
Sbjct: 352 RFLEEIEEYI 361
>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
gi|160380608|sp|A6RGE3.1|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
Length = 542
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 23/293 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L +++ + TPGR
Sbjct: 199 PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 259 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI-----RPDR---QTCMWS 310
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I +F K L+ +++
Sbjct: 311 ATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIMEA 370
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+K +KV++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 371 -----NKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 423
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +L
Sbjct: 424 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITL 476
>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
Length = 506
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 157/309 (50%), Gaps = 15/309 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ AK ++ + ++ GG ++ Q L +D++V TPGR
Sbjct: 133 PLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSVQSQLKELERGVDILVATPGR 192
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ ++ G + ++YL LDEAD M D GF P IRK ++N P GQ QT+L S
Sbjct: 193 LDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKI---VENTDMPPAGQR-QTMLFS 248
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT + +Q+L + L + + R +++ + L ++ +P+
Sbjct: 249 ATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVDKRSMLMDMIHAQKPNG 308
Query: 196 SKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
G ++VF T + +++ +L + IS HG+ ER L F+ G P
Sbjct: 309 LNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRT--GVTPI 366
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA- 311
LV TD+AARGLD+ V HVI +D P + DY+HR GRT R G G T+ KD LA
Sbjct: 367 LVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKSGFATAFFTDKDTSLAR 426
Query: 312 ---DRIEEA 317
D ++EA
Sbjct: 427 PLVDLMQEA 435
>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 484
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 152/310 (49%), Gaps = 16/310 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R PR ++L PTREL+ QV + + ++ GG QE+ + D+++
Sbjct: 69 RARMPRTLILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQENKIMRGADVLIA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGF 131
TPGR+L E G ++ I+ LV+DEAD M D GF PDI + LVP
Sbjct: 129 TPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTR---------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+ SATM + +L + + + + + + K E L Q++
Sbjct: 179 QTLFFSATMPPEITRLTETFLHNPVRIEVARASSTATTITQGLVASAHGPAKRETLRQLI 238
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ + N + +FCN + L ++ S HG++ + R+ +L+ FK+ GD
Sbjct: 239 RGAENLKNAI-IFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKS--GDV 295
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LVC+D+AARGLD+ DV HV FD P ++ DY+HR GRT R G G S+V D
Sbjct: 296 NLLVCSDVAARGLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIVTSADRKY 355
Query: 311 ADRIEEAIRK 320
D IE+ I +
Sbjct: 356 VDEIEKLIAR 365
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 162/306 (52%), Gaps = 20/306 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL+ QV ++ + + +ST++ GG + PQ +L + +D+VV TPGR+
Sbjct: 101 RALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVATPGRL 160
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L H++ + ++ LVLDEAD M D GF DI++ L L + Q +L SA
Sbjct: 161 LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK--------RQNLLFSA 212
Query: 139 TMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
T + ++ L D A + R +T + +A H + + K E L +++
Sbjct: 213 TFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDR----DKKRELLTHLIK--Q 266
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+V+VF T + + + L ++ IS + HG R L +FK DG LV
Sbjct: 267 HNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFK--DGTLQVLV 324
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TD+AARG+D+D + HV+ +D P DY+HR GRT R GA G+ SLV ++ L I
Sbjct: 325 ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI 384
Query: 315 EEAIRK 320
E+ I++
Sbjct: 385 EKLIKR 390
>gi|451847658|gb|EMD60965.1| hypothetical protein COCSADRAFT_174289 [Cochliobolus sativus ND90Pr]
Length = 1084
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 156/292 (53%), Gaps = 25/292 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ + +R R+T V GG PQ L +++ + TPGR
Sbjct: 749 PIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLARGVEVCIATPGR 808
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 809 LIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQI-----RPDR---QTCMWS 860
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS- 196
AT K V++L A + + I S + LS + ++++ +++ LE +S
Sbjct: 861 ATWPKEVRQLA-------ADYQKDWIQVNIGS-----MDLS-ANHRIQQIVEHLETIMSD 907
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G P +V
Sbjct: 908 KENKILIFTGTKRVADEITRFLRQDGWPALSIHGDKAQNERDWVLNEFKT--GKSPIMVA 965
Query: 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R GA G +L ++
Sbjct: 966 TDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTEN 1017
>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
Length = 417
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 16/305 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PR ++L PTREL+ Q+ ++ ++ + ++ +++GG D L + D++V
Sbjct: 69 KPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVA 128
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+L++IE+ +I+ LVLDEAD M D GF I + + + R QT
Sbjct: 129 TPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRK--------QT 180
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN-KLEALLQVLE 192
+L SAT+ +L EE S +K + H ++ L+ N KL L+ L+
Sbjct: 181 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 240
Query: 193 PSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+G + +VF N + + + L ++ V G++P +R + + +FK G+
Sbjct: 241 ---QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKK--GEV 295
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ D+ HVI FD P Y+HR GRT R G KG SLV D+ +
Sbjct: 296 KVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGV 355
Query: 311 ADRIE 315
+IE
Sbjct: 356 IGKIE 360
>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160380609|sp|A7E449.1|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 572
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + +R R+T V GG Q L +++ + TPGR
Sbjct: 223 PIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGR 282
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + YLVLDEAD M D GF P IRK L + +P+ QT + S
Sbjct: 283 LIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQI-----RPDR---QTCMWS 334
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V+ L + I L S H+ +I +F K LE +++
Sbjct: 335 ATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME- 393
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
K NK+++F T + + FL ++ ++ HG+ ER LN+FK G
Sbjct: 394 -----DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GK 446
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ ++ HV +D+P NS DY+HR GRT R G KG +L
Sbjct: 447 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITL 499
>gi|453331363|dbj|GAC86942.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 572
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 18/313 (5%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV K + R ++ GG + Q + LN
Sbjct: 124 EKLSGSRARARMPRSLILEPTRELALQVADNFKLYGKYLRLTHALLIGGESMAEQREVLN 183
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRA 123
+D+++ TPGR+L G ++ LV+DEAD M D GF PDI K L+P +NR
Sbjct: 184 RGVDVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRMLDMGFIPDIEKIVSLLP-RNR- 241
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
QT+ SATM +++L D + T + +A+ + + + + K
Sbjct: 242 --------QTLFFSATMAPEIRRLADAFLSNPVQI-TVSRPSSVATTIEEGLIVVEEDEK 292
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
AL ++L +VFCN + +L ++ + + HG++ R L+
Sbjct: 293 RRALRKLLRS--QDVQSAIVFCNRKRDVDMLQRYLTKHGFAAGHLHGDLAQSLRFSTLDS 350
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
FK+ G+ LVC+D+AARG+D+ + HV FD P N+ DY+HR GRT R G G S+
Sbjct: 351 FKS--GELKILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKHGHAFSI 408
Query: 303 VAKKDVLLADRIE 315
+D L + IE
Sbjct: 409 AGPRDRRLLEAIE 421
>gi|356522500|ref|XP_003529884.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Glycine
max]
Length = 507
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 16/308 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ + A +R +ST + GG PQ L +++V+ TPGR
Sbjct: 175 PIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 234
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + + YLVLDEAD M D GF P +RK + + +P+ QT+ S
Sbjct: 235 LIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQI-----RPD---RQTLYWS 286
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT K V++L + + + K A ++ + + K + L+++LE +
Sbjct: 287 ATWPKEVEQLARKFLYNPYKVIIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLE-DIMD 345
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G+++++F +T + L + ++ HG+ ER L++FK+ G P + T
Sbjct: 346 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKS--GKSPIMTAT 403
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR--- 313
D+AARGLD+ DV +VI +DFP + DY+HR GRT R GAKG + + A
Sbjct: 404 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTYFTAANARFAKELIA 463
Query: 314 -IEEAIRK 320
+EEA +K
Sbjct: 464 ILEEAGQK 471
>gi|225441549|ref|XP_002281113.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis
vinifera]
Length = 622
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 154/309 (49%), Gaps = 15/309 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ + + GG + Q L +D++V TPGR
Sbjct: 242 PLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGR 301
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P IRK + + P QT+L S
Sbjct: 302 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV----EQMDMPPPGVRQTMLFS 357
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q+L + L + + R +F+ S + L LL +
Sbjct: 358 ATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANG 417
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G + +VF T + +++H+L N HG+ QER L FK+ G+ P
Sbjct: 418 AHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFKS--GNTPI 475
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL--- 309
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + +
Sbjct: 476 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLAR 535
Query: 310 -LADRIEEA 317
LAD ++EA
Sbjct: 536 PLADLMQEA 544
>gi|384411059|ref|YP_005620424.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|335931433|gb|AEH61973.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 506
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 21/304 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + +++ GG + Q+ +L +D+++ TP
Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L E G ++ + LV+DEAD M D GF PDI L P + QT+L
Sbjct: 145 GRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKL------PTSR--QTLL 196
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM A++KL D + S I++S +K + L +L
Sbjct: 197 FSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVS-PRSKKKKLCDMLR--A 253
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + ++FCN + R + L + S HG++ ER L +FKN G LV
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKN--GQISVLV 311
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
+D+AARGLD+ + HV FD P + DY+HR GRT R GA G+ + V D
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD------- 364
Query: 315 EEAI 318
EEAI
Sbjct: 365 EEAI 368
>gi|414343394|ref|YP_006984915.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028729|gb|AFW01984.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 572
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 18/313 (5%)
Query: 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN 65
E + G + R PR+++L PTREL+ QV K + R ++ GG + Q + LN
Sbjct: 124 EKLSGSRARARMPRSLILEPTRELALQVADNFKLYGKYLRLTHALLIGGESMAEQREVLN 183
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRA 123
+D+++ TPGR+L G ++ LV+DEAD M D GF PDI K L+P +NR
Sbjct: 184 RGVDVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRMLDMGFIPDIEKIVSLLP-RNR- 241
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
QT+ SATM +++L D + T + +A+ + + + + K
Sbjct: 242 --------QTLFFSATMAPEIRRLADAFLSNPVQI-TVSRPSSVATTIEEGLIVVEEDEK 292
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
AL ++L +VFCN + +L ++ + + HG++ R L+
Sbjct: 293 RRALRKLLRS--QDVQSAIVFCNRKRDVDMLQRYLTKHGFAAGHLHGDLAQSLRFSTLDS 350
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
FK+ G+ LVC+D+AARG+D+ + HV FD P N+ DY+HR GRT R G G S+
Sbjct: 351 FKS--GELKILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKHGHAFSI 408
Query: 303 VAKKDVLLADRIE 315
+D L + IE
Sbjct: 409 AGPRDRRLLEAIE 421
>gi|421529828|ref|ZP_15976345.1| DEAD/DEAH box helicase [Pseudomonas putida S11]
gi|402212689|gb|EJT84069.1| DEAD/DEAH box helicase [Pseudomonas putida S11]
Length = 415
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 14/305 (4%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++Q + + S +S +V+GG + Q L D+++GTPGR+
Sbjct: 48 RALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTPGRL 107
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
L+ + GN+ ++ L+LDEAD M D GF D+ + +NR QT+L SA
Sbjct: 108 LEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRQ--------QTLLFSA 159
Query: 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
T A++ ++ + + HL +++ + R I ++K E ++Q L +
Sbjct: 160 TTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHK-EQIVQWLLAN-ET 217
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
+K ++F NT + + L + HGE ++R L++FK G LV T
Sbjct: 218 FDKAIIFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLALDRFKQ--GSSKVLVAT 275
Query: 258 DLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D+AARGLD+D +D VI FD P + +Y+HR GRT R G +G SL+ D L IE
Sbjct: 276 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 335
Query: 317 AIRKN 321
+++
Sbjct: 336 YLKQQ 340
>gi|359795873|ref|ZP_09298486.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
gi|359366192|gb|EHK67876.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
Length = 466
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 22/308 (7%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
RA++L PTREL++QV+ K S RS +V GG + PQ+++L +++V TPGR+
Sbjct: 72 RALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRL 131
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKF--LVPLKNRASKPNGQGFQTVLV 136
L H+E N+ + LVLDEAD M D GF PD+ + L+P + Q +L
Sbjct: 132 LDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQR----------QGLLF 181
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT + ++KL + + + + K++ S+ K A++ +++ S
Sbjct: 182 SATFSNEIRKLGRSYLNHPVEIEVAARNATATTITQIAYKMT-SDAKRAAVVHLVK---S 237
Query: 197 KG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+G +V+VF NT + + L + + + HG+ +R++ L FK G+ LV
Sbjct: 238 RGLKQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKA--GELEVLV 295
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL-VAKKDVLLADR 313
TD+AARGLD+ V VI +D P NS DY+HR GRT R GA G+ +L A ++ L D
Sbjct: 296 ATDVAARGLDVAGVPCVINYDLPYNSEDYVHRIGRTGRAGASGEAIALFTADEERYLLD- 354
Query: 314 IEEAIRKN 321
IE+ I++
Sbjct: 355 IEKLIKRE 362
>gi|357627854|gb|EHJ77400.1| hypothetical protein KGM_01171 [Danaus plexippus]
Length = 473
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 168/320 (52%), Gaps = 23/320 (7%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
+ +L P+R A++L PTREL+ Q+ +++ + ++ GG + Q L+
Sbjct: 96 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALILSKK 155
Query: 68 IDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRAS 124
+++ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L +P + R
Sbjct: 156 PHIIIATPGRLVDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILRVIPRERR-- 213
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR--HDFIKLSGSEN 182
T L SATMTK VQKL Q + ST ++ + + + FI + +
Sbjct: 214 --------TYLFSATMTKKVQKLQRASLQDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDV 265
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242
L +L L GN +VF +T + V L + V HG++ Q+R+ LN
Sbjct: 266 YLVHILNEL-----AGNSFIVFVSTCAGALRVALLLRALGVGAVPLHGQMSQQKRLAALN 320
Query: 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301
KFK++ L+CTD+A+RGLD+ VD V+ D PL+S DY+HR GRTAR G GK +
Sbjct: 321 KFKSKARSV--LICTDVASRGLDIPHVDVVVNLDIPLHSKDYIHRVGRTARAGRAGKAIT 378
Query: 302 LVAKKDVLLADRIEEAIRKN 321
V++ DV L RIE+ I K
Sbjct: 379 FVSQYDVELYQRIEQLIGKQ 398
>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 506
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 21/304 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PR+++L PTREL+ QV + + + +++ GG + Q+ +L +D+++ TP
Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR+L E G ++ + LV+DEAD M D GF PDI L P + QT+L
Sbjct: 145 GRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKL------PTSR--QTLL 196
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SATM A++KL D + S I++S +K + L +L
Sbjct: 197 FSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVS-PRSKKKKLCDMLR--A 253
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + ++FCN + R + L + S HG++ ER L +FKN G LV
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKN--GQISVLV 311
Query: 256 CTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
+D+AARGLD+ + HV FD P + DY+HR GRT R GA G+ + V D
Sbjct: 312 ASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD------- 364
Query: 315 EEAI 318
EEAI
Sbjct: 365 EEAI 368
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 161/310 (51%), Gaps = 19/310 (6%)
Query: 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
P+ A +L PTREL+ Q+ + +++ + R + GG + Q+ +L +VV T
Sbjct: 97 PKPLYACILAPTRELAYQIQKQFEALGANLGVRCCCIVGGLDIMAQKVALAKRPHIVVAT 156
Query: 75 PGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
PGR+ H+E+ +KYLVLDEAD + D FGP I K L +P + R
Sbjct: 157 PGRLQDHLENTKGFSLRSLKYLVLDEADRLLDMDFGPIIDKILKVIPKERR--------- 207
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
T+L SATM+ V++L + S+ + +++ + ++ G + E + L
Sbjct: 208 -TMLFSATMSTKVKRLQRASLVNPVKVEVSSKYSTVSTLQQYYV--FGPHMRKEVNMITL 264
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
SLS G ++VF NT+N + + L I + H ++ R+ +LNKF+ G
Sbjct: 265 VRSLS-GKSIIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQSTRLGSLNKFRA--GGR 321
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ TD+AARGLD+ VD VI + P NS DY+HR GRTAR G GK + V + D+
Sbjct: 322 QVLIATDVAARGLDIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDIEF 381
Query: 311 ADRIEEAIRK 320
RIEE I K
Sbjct: 382 HLRIEEVIGK 391
>gi|293331893|ref|NP_001169380.1| uncharacterized protein LOC100383248 [Zea mays]
gi|224029005|gb|ACN33578.1| unknown [Zea mays]
Length = 498
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 149/287 (51%), Gaps = 24/287 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ A +R T + GG PQ L+ +D+VV TPGR
Sbjct: 223 PTVLVLAPTRELATQILDEAVKFGRSSRISCTCLYGGAPKGPQLRDLDRGVDVVVATPGR 282
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ +E + + YLVLDEAD M D GF P IRK + + +R QT++ +
Sbjct: 283 LNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRR--------QTLMYT 334
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA---RH-DFIKLSGSENKLEALLQVLEP 193
AT K V+++ D+ + ++ +A++ +H + I S + +LE +L+
Sbjct: 335 ATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRRLEQILR---- 390
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLN--ENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S G+K+++FC T R D Q HG+ ER + LN+F++ G
Sbjct: 391 SQDSGSKILIFCTT---KRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNQFRS--GRS 445
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
P LV TD+AARGLD+ D+ VI +DFP DY+HR GRT R GA G
Sbjct: 446 PILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATG 492
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 163/318 (51%), Gaps = 23/318 (7%)
Query: 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+L P+R A++L PTREL+ Q+ +++ + ++ GG + Q L
Sbjct: 85 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPH 144
Query: 70 MVVGTPGRILQHIEDGN-MVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKP 126
+++ TPGR++ H+E+ +K+LV+DEAD + + F ++ K L +P + R
Sbjct: 145 IIIATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERR---- 200
Query: 127 NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR--HDFIKLSGSENKL 184
T+L SATMTK VQKL Q + ST ++ + + + FI + + L
Sbjct: 201 ------TLLFSATMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYL 254
Query: 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
+L L GN M+FC+T N++ L V HG++ +R+ L KF
Sbjct: 255 VHILNELS-----GNSFMIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKF 309
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
K ++ L+ TD+A+RGLD+ VD VI FD P +S DY+HR GRTAR G G + V
Sbjct: 310 KAKNRSI--LISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFV 367
Query: 304 AKKDVLLADRIEEAIRKN 321
+ DV L RIE+ I K
Sbjct: 368 TQYDVELYQRIEQLIGKQ 385
>gi|406921106|gb|EKD59063.1| hypothetical protein ACD_56C00003G0014 [uncultured bacterium]
Length = 407
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 18/300 (6%)
Query: 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP 67
ML +MK + +V+ PTREL+ Q+ ++ + R S +V GG +R Q D L +
Sbjct: 123 MLHKIMKNPSEKLLVVVPTRELAIQIQEEFRAFAQGLRIGSVVVVGGANIRTQIDCLRSR 182
Query: 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN 127
++V+GTPGR+ I+ N+ +VLDEAD M D GF PD+ K+L+ L N
Sbjct: 183 YNVVIGTPGRLKDLIQRKNLNLASFGNVVLDEADRMLDMGFIPDV-KYLLSLVNEKR--- 238
Query: 128 GQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL 187
QT+ SAT+ ++ L+ + + T + A+ D +++ E+K+E
Sbjct: 239 ----QTLFFSATLAPEIENLIKDFLTDPIRVSIKT-RETSANIDQDVVRMKPGEDKIE-- 291
Query: 188 LQVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
VL+ L K N KV++F T + + + H L++N + HG+ +R + L FK
Sbjct: 292 --VLQDLLRKANFSKVLIFSRTKHGAEKLSHILHKNGFKAESIHGDKSHAKRQKALKLFK 349
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
D LV TD+AARGLD+ DV HVI FD P DY+HR GRT R G G + +
Sbjct: 350 ENYVDI--LVATDVAARGLDIPDVSHVINFDVPATYDDYVHRIGRTGRAGKTGVALTFIG 407
>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
gi|388600314|ref|ZP_10158710.1| ATP-dependent RNA helicase DbpA [Vibrio campbellii DS40M4]
gi|424034228|ref|ZP_17773635.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|424042917|ref|ZP_17780578.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
gi|408873379|gb|EKM12577.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408884198|gb|EKM22949.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
Length = 459
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M + GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F + GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQY-FYNVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT + V L+ S V+ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
>gi|350530090|ref|ZP_08909031.1| ATP-dependent RNA helicase DbpA [Vibrio rotiferianus DAT722]
Length = 459
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 19/316 (6%)
Query: 9 LGVL----MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDS 63
LGVL +K R +++VLCPTREL++QV + +++ + + GG + PQ S
Sbjct: 60 LGVLSNLNVKRFRVQSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGS 119
Query: 64 LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
L + ++VGTPGRIL H+E G + ++ LVLDEAD M + GF + L + + A
Sbjct: 120 LEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGF----QDALDAIIDAA 175
Query: 124 SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183
K QT+L SAT + ++++ Q ++ + H + A++ F + GSE +
Sbjct: 176 PKQR----QTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQY-FYNVEGSEAR 230
Query: 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
EAL +L + +VFCNT + V L+ S V+ HG++ +ER + L +
Sbjct: 231 DEALANLL--LTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQ 288
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F N+ LV TD+AARGLD+D +D V F+ + ++HR GRT R G+KG S
Sbjct: 289 FANK--SVSILVATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 303 VAKKDVLLADRIEEAI 318
+KD L RIEE +
Sbjct: 347 FGEKDGLRVARIEEYL 362
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,876,614,315
Number of Sequences: 23463169
Number of extensions: 201547592
Number of successful extensions: 595218
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 22337
Number of HSP's successfully gapped in prelim test: 12860
Number of HSP's that attempted gapping in prelim test: 486121
Number of HSP's gapped (non-prelim): 40291
length of query: 323
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 181
effective length of database: 9,027,425,369
effective search space: 1633963991789
effective search space used: 1633963991789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)