Query 047490
Match_columns 323
No_of_seqs 124 out of 1423
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 11:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 9.2E-53 2E-57 362.6 28.1 301 12-321 160-463 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 2.2E-51 4.7E-56 334.0 22.4 300 10-322 122-423 (476)
3 KOG0328 Predicted ATP-dependen 100.0 1.6E-49 3.5E-54 310.4 25.0 294 14-319 92-386 (400)
4 PTZ00110 helicase; Provisional 100.0 1.8E-48 4E-53 352.3 30.4 297 15-322 201-500 (545)
5 COG0513 SrmB Superfamily II DN 100.0 2.3E-48 4.9E-53 348.5 29.2 290 20-321 102-396 (513)
6 PLN00206 DEAD-box ATP-dependen 100.0 5.6E-47 1.2E-51 341.8 31.0 296 15-322 194-491 (518)
7 PRK04837 ATP-dependent RNA hel 100.0 3.5E-47 7.6E-52 337.1 29.1 294 16-320 82-376 (423)
8 PRK11776 ATP-dependent RNA hel 100.0 9.2E-47 2E-51 337.9 29.9 292 15-320 70-363 (460)
9 PRK11192 ATP-dependent RNA hel 100.0 2.7E-46 5.9E-51 332.9 31.5 294 15-320 71-366 (434)
10 PRK10590 ATP-dependent RNA hel 100.0 1.6E-46 3.6E-51 334.9 29.1 291 17-320 75-366 (456)
11 KOG0326 ATP-dependent RNA heli 100.0 3.7E-47 8.1E-52 302.0 21.2 302 6-321 142-444 (459)
12 PRK04537 ATP-dependent RNA hel 100.0 2.3E-46 4.9E-51 339.8 28.9 293 17-320 84-378 (572)
13 KOG0333 U5 snRNP-like RNA heli 100.0 2E-46 4.3E-51 315.7 25.7 307 8-319 313-637 (673)
14 PRK11634 ATP-dependent RNA hel 100.0 3.9E-46 8.4E-51 340.1 29.8 293 14-319 71-365 (629)
15 PRK01297 ATP-dependent RNA hel 100.0 2E-45 4.2E-50 330.1 30.9 294 17-321 162-457 (475)
16 PTZ00424 helicase 45; Provisio 100.0 1.2E-44 2.5E-49 320.3 30.1 294 15-320 94-388 (401)
17 KOG0339 ATP-dependent RNA heli 100.0 6.7E-45 1.4E-49 305.4 26.0 299 13-322 292-591 (731)
18 KOG0335 ATP-dependent RNA heli 100.0 1.2E-44 2.5E-49 307.4 25.7 300 16-322 151-460 (482)
19 KOG0336 ATP-dependent RNA heli 100.0 4.7E-45 1E-49 299.2 22.4 299 13-323 290-589 (629)
20 KOG0338 ATP-dependent RNA heli 100.0 1.4E-44 3.1E-49 303.6 19.5 292 14-317 249-544 (691)
21 KOG0342 ATP-dependent RNA heli 100.0 1E-42 2.3E-47 291.4 23.7 290 15-316 152-447 (543)
22 KOG0332 ATP-dependent RNA heli 100.0 1.5E-42 3.2E-47 281.1 23.8 300 7-321 149-459 (477)
23 KOG0340 ATP-dependent RNA heli 100.0 3.5E-42 7.7E-47 277.3 21.8 304 7-321 64-376 (442)
24 KOG0345 ATP-dependent RNA heli 100.0 1.9E-41 4.1E-46 282.3 23.4 292 7-311 67-369 (567)
25 KOG0343 RNA Helicase [RNA proc 100.0 1.9E-41 4E-46 287.4 23.6 292 12-317 136-434 (758)
26 KOG0341 DEAD-box protein abstr 100.0 5.9E-42 1.3E-46 279.3 15.4 299 8-320 237-543 (610)
27 TIGR03817 DECH_helic helicase/ 100.0 2.7E-40 5.8E-45 307.4 23.3 295 13-320 77-402 (742)
28 KOG0346 RNA helicase [RNA proc 100.0 5.3E-40 1.2E-44 271.5 19.1 296 13-320 89-424 (569)
29 KOG0347 RNA helicase [RNA proc 100.0 7.8E-41 1.7E-45 283.5 14.6 303 15-323 261-587 (731)
30 KOG0348 ATP-dependent RNA heli 100.0 8.6E-40 1.9E-44 276.3 20.6 308 7-317 201-565 (708)
31 KOG4284 DEAD box protein [Tran 100.0 2E-39 4.4E-44 279.6 20.9 287 9-308 85-381 (980)
32 KOG0334 RNA helicase [RNA proc 100.0 3.1E-39 6.6E-44 293.1 20.5 299 13-322 434-736 (997)
33 KOG0327 Translation initiation 100.0 7.6E-39 1.6E-43 261.2 19.2 292 12-318 89-382 (397)
34 TIGR00614 recQ_fam ATP-depende 100.0 2.4E-38 5.2E-43 283.2 24.4 281 17-315 51-342 (470)
35 PLN03137 ATP-dependent DNA hel 100.0 7.9E-38 1.7E-42 290.7 26.1 283 17-315 500-796 (1195)
36 KOG0350 DEAD-box ATP-dependent 100.0 4.5E-38 9.7E-43 264.0 17.6 299 16-319 214-553 (620)
37 KOG0337 ATP-dependent RNA heli 100.0 2.8E-38 6.1E-43 260.1 15.7 305 2-320 77-382 (529)
38 PRK11057 ATP-dependent DNA hel 100.0 3.6E-37 7.8E-42 282.6 24.7 279 17-315 65-352 (607)
39 TIGR01389 recQ ATP-dependent D 100.0 5.3E-37 1.1E-41 282.3 24.7 279 17-315 53-340 (591)
40 PRK09751 putative ATP-dependen 100.0 1.8E-36 3.9E-41 292.2 26.6 276 16-302 36-381 (1490)
41 PRK13767 ATP-dependent helicas 100.0 7.1E-37 1.5E-41 290.0 22.6 282 15-305 82-397 (876)
42 KOG0344 ATP-dependent RNA heli 100.0 5.3E-36 1.2E-40 256.8 17.9 297 15-322 207-511 (593)
43 COG0514 RecQ Superfamily II DN 100.0 2.1E-35 4.6E-40 259.9 22.1 282 18-317 58-348 (590)
44 COG1111 MPH1 ERCC4-like helica 100.0 1.8E-35 3.9E-40 249.9 19.9 287 9-308 51-483 (542)
45 PRK02362 ski2-like helicase; P 100.0 1.4E-35 2.9E-40 278.7 21.3 275 16-306 66-397 (737)
46 COG1201 Lhr Lhr-like helicases 100.0 1.9E-35 4.1E-40 269.3 19.8 275 16-305 72-361 (814)
47 TIGR00580 mfd transcription-re 100.0 1.5E-34 3.2E-39 271.8 25.3 263 17-306 500-770 (926)
48 PRK10917 ATP-dependent DNA hel 100.0 3.6E-34 7.9E-39 265.5 24.5 264 16-305 309-588 (681)
49 TIGR00643 recG ATP-dependent D 100.0 1.2E-33 2.5E-38 260.5 25.6 266 16-304 283-564 (630)
50 PRK10689 transcription-repair 100.0 1.8E-33 3.9E-38 269.9 27.4 263 16-305 648-918 (1147)
51 PRK00254 ski2-like helicase; P 100.0 6.2E-34 1.3E-38 266.9 23.7 275 16-307 67-389 (720)
52 PRK01172 ski2-like helicase; P 100.0 1.1E-33 2.3E-38 264.1 23.5 276 17-306 65-378 (674)
53 COG1202 Superfamily II helicas 100.0 5.3E-34 1.2E-38 243.6 16.6 277 16-306 260-553 (830)
54 COG1204 Superfamily II helicas 100.0 2.4E-33 5.3E-38 258.5 22.0 283 8-304 68-406 (766)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.8E-32 3.9E-37 251.3 24.9 274 15-303 59-388 (844)
56 TIGR01587 cas3_core CRISPR-ass 100.0 6.6E-33 1.4E-37 241.5 18.5 280 11-307 23-337 (358)
57 PHA02558 uvsW UvsW helicase; P 100.0 2.8E-32 6E-37 245.5 21.7 258 15-297 156-443 (501)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.3E-32 1.8E-36 250.8 24.8 268 17-311 45-341 (819)
59 PHA02653 RNA helicase NPH-II; 100.0 2.6E-31 5.7E-36 242.0 25.0 277 14-315 219-523 (675)
60 PRK11664 ATP-dependent RNA hel 100.0 1.8E-31 3.9E-36 249.1 23.4 265 17-309 48-342 (812)
61 PRK13766 Hef nuclease; Provisi 100.0 1.5E-29 3.3E-34 240.5 26.7 282 14-308 55-481 (773)
62 COG1200 RecG RecG-like helicas 100.0 2E-29 4.3E-34 222.0 22.8 268 15-307 309-592 (677)
63 PRK12898 secA preprotein trans 100.0 2.3E-29 5E-34 226.1 20.6 286 15-309 142-589 (656)
64 PRK09200 preprotein translocas 100.0 3E-29 6.4E-34 230.0 21.3 285 16-309 118-544 (790)
65 KOG0329 ATP-dependent RNA heli 100.0 5.4E-30 1.2E-34 198.4 13.1 255 14-318 107-368 (387)
66 TIGR00603 rad25 DNA repair hel 100.0 1.4E-28 2.9E-33 223.6 23.9 277 17-318 298-621 (732)
67 KOG0351 ATP-dependent DNA heli 100.0 5.8E-29 1.3E-33 231.5 21.4 284 18-316 305-602 (941)
68 PRK09401 reverse gyrase; Revie 100.0 7.1E-29 1.5E-33 238.9 22.6 258 16-291 122-429 (1176)
69 COG1205 Distinct helicase fami 100.0 3.8E-29 8.2E-34 234.0 19.8 306 7-318 105-436 (851)
70 KOG0349 Putative DEAD-box RNA 100.0 1.2E-29 2.5E-34 210.5 14.4 287 15-306 284-615 (725)
71 TIGR00963 secA preprotein tran 100.0 9.8E-29 2.1E-33 223.3 20.9 285 17-310 97-521 (745)
72 PRK04914 ATP-dependent helicas 100.0 2.7E-28 5.8E-33 229.0 23.9 138 181-320 478-617 (956)
73 KOG0952 DNA/RNA helicase MER3/ 100.0 5.4E-29 1.2E-33 225.7 18.1 281 14-307 161-492 (1230)
74 KOG0354 DEAD-box like helicase 100.0 3.4E-28 7.3E-33 217.3 22.6 298 7-317 96-540 (746)
75 TIGR03714 secA2 accessory Sec 100.0 1E-27 2.2E-32 218.1 22.7 285 17-309 111-540 (762)
76 KOG0352 ATP-dependent DNA heli 100.0 6.9E-29 1.5E-33 205.5 13.6 280 19-315 63-371 (641)
77 PRK14701 reverse gyrase; Provi 100.0 5E-28 1.1E-32 237.8 20.1 278 16-309 121-459 (1638)
78 TIGR03158 cas3_cyano CRISPR-as 100.0 4.7E-27 1E-31 202.8 22.6 255 17-291 39-357 (357)
79 COG1197 Mfd Transcription-repa 100.0 9.8E-27 2.1E-31 216.0 25.7 263 17-306 643-913 (1139)
80 PRK11131 ATP-dependent RNA hel 99.9 1.9E-26 4E-31 219.8 22.2 263 19-310 120-415 (1294)
81 KOG0947 Cytoplasmic exosomal R 99.9 1.4E-26 3.1E-31 208.1 18.1 276 11-313 334-732 (1248)
82 TIGR00595 priA primosomal prot 99.9 1.2E-25 2.5E-30 201.1 23.0 275 17-311 25-386 (505)
83 KOG0948 Nuclear exosomal RNA h 99.9 5.5E-27 1.2E-31 206.0 12.8 273 17-313 172-547 (1041)
84 TIGR01054 rgy reverse gyrase. 99.9 2.9E-25 6.3E-30 214.4 22.1 243 16-278 120-409 (1171)
85 PRK13104 secA preprotein trans 99.9 5.7E-25 1.2E-29 201.8 22.0 285 17-310 123-591 (896)
86 PRK05580 primosome assembly pr 99.9 1.7E-24 3.8E-29 200.4 22.8 278 17-314 190-557 (679)
87 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.1E-24 4.6E-29 206.5 22.6 267 17-310 111-408 (1283)
88 COG1061 SSL2 DNA or RNA helica 99.9 1.5E-24 3.3E-29 191.8 19.4 251 18-293 81-376 (442)
89 PRK09694 helicase Cas3; Provis 99.9 3.3E-24 7.2E-29 200.3 20.9 270 14-295 328-664 (878)
90 PRK12904 preprotein translocas 99.9 2.3E-24 5.1E-29 197.6 19.0 284 17-309 122-576 (830)
91 PLN03142 Probable chromatin-re 99.9 8E-24 1.7E-28 199.7 21.6 284 17-316 219-611 (1033)
92 KOG0353 ATP-dependent DNA heli 99.9 4.5E-24 9.8E-29 174.9 17.1 284 17-314 134-475 (695)
93 KOG0951 RNA helicase BRR2, DEA 99.9 4.2E-24 9.1E-29 196.9 18.3 281 17-308 364-704 (1674)
94 PRK12906 secA preprotein trans 99.9 8.2E-24 1.8E-28 193.2 16.2 293 6-309 110-556 (796)
95 COG4098 comFA Superfamily II D 99.9 7.7E-23 1.7E-27 165.4 19.7 275 15-319 142-429 (441)
96 COG4581 Superfamily II RNA hel 99.9 6.1E-23 1.3E-27 190.7 18.2 270 15-305 160-536 (1041)
97 PRK13107 preprotein translocas 99.9 1.4E-22 3.1E-27 185.7 19.7 285 16-309 122-594 (908)
98 PRK11448 hsdR type I restricti 99.9 4E-22 8.8E-27 191.5 20.1 267 11-295 457-802 (1123)
99 KOG0385 Chromatin remodeling c 99.9 8.9E-22 1.9E-26 174.1 18.8 272 14-306 215-597 (971)
100 KOG0950 DNA polymerase theta/e 99.9 5.4E-22 1.2E-26 179.6 16.3 283 17-314 269-619 (1008)
101 KOG0387 Transcription-coupled 99.9 1.8E-20 3.8E-25 166.6 19.9 273 17-308 255-660 (923)
102 COG1203 CRISPR-associated heli 99.9 6.9E-21 1.5E-25 178.2 17.9 287 15-312 244-556 (733)
103 PRK12899 secA preprotein trans 99.8 2.3E-19 5E-24 165.2 21.0 127 180-310 550-685 (970)
104 KOG0949 Predicted helicase, DE 99.8 1.5E-19 3.3E-24 163.7 18.2 125 6-142 545-673 (1330)
105 COG1643 HrpA HrpA-like helicas 99.8 3.8E-19 8.2E-24 164.5 19.5 272 17-309 94-390 (845)
106 cd00079 HELICc Helicase superf 99.8 1E-19 2.2E-24 135.5 12.9 120 181-302 11-131 (131)
107 TIGR00631 uvrb excinuclease AB 99.8 1.7E-19 3.7E-24 165.5 15.5 135 180-317 424-564 (655)
108 KOG0922 DEAH-box RNA helicase 99.8 1.2E-17 2.7E-22 146.7 22.5 268 19-309 97-393 (674)
109 PRK12326 preprotein translocas 99.8 3E-18 6.5E-23 154.1 17.1 292 8-308 110-549 (764)
110 KOG0390 DNA repair protein, SN 99.8 3.6E-17 7.9E-22 148.6 21.9 283 8-304 284-703 (776)
111 KOG0384 Chromodomain-helicase 99.8 1.2E-18 2.5E-23 161.5 12.1 111 196-306 697-811 (1373)
112 COG1198 PriA Primosomal protei 99.8 2.1E-17 4.5E-22 150.9 19.5 279 17-315 245-612 (730)
113 COG1110 Reverse gyrase [DNA re 99.8 6.3E-17 1.4E-21 148.2 22.0 246 13-277 121-416 (1187)
114 PF00271 Helicase_C: Helicase 99.8 1.2E-18 2.5E-23 117.1 7.3 77 216-294 1-78 (78)
115 PRK13103 secA preprotein trans 99.8 2.3E-17 5E-22 151.9 17.1 291 10-309 116-594 (913)
116 cd00268 DEADc DEAD-box helicas 99.8 1.1E-17 2.3E-22 134.2 13.3 134 15-156 67-200 (203)
117 COG4096 HsdR Type I site-speci 99.8 2.2E-17 4.8E-22 148.6 14.8 258 11-293 209-525 (875)
118 KOG0389 SNF2 family DNA-depend 99.7 2.7E-17 5.8E-22 146.5 14.0 126 183-308 762-890 (941)
119 KOG0392 SNF2 family DNA-depend 99.7 7.6E-17 1.7E-21 149.4 15.6 270 20-306 1034-1454(1549)
120 PRK12903 secA preprotein trans 99.7 2.1E-16 4.6E-21 144.3 18.2 289 12-309 114-542 (925)
121 TIGR00348 hsdR type I site-spe 99.7 3.1E-16 6.7E-21 145.7 19.4 260 13-293 289-634 (667)
122 PRK05298 excinuclease ABC subu 99.7 4.3E-17 9.3E-22 150.8 13.4 126 181-309 429-560 (652)
123 PRK12900 secA preprotein trans 99.7 7.1E-17 1.5E-21 149.4 13.2 171 132-309 535-714 (1025)
124 COG0556 UvrB Helicase subunit 99.7 1.8E-16 4E-21 135.9 14.7 179 131-320 387-571 (663)
125 PF00270 DEAD: DEAD/DEAH box h 99.7 5.6E-17 1.2E-21 126.2 10.1 132 8-145 35-167 (169)
126 PF06862 DUF1253: Protein of u 99.7 1.7E-14 3.7E-19 124.7 25.5 297 17-317 37-426 (442)
127 KOG4150 Predicted ATP-dependen 99.7 6E-17 1.3E-21 139.7 10.4 302 15-321 329-657 (1034)
128 KOG0923 mRNA splicing factor A 99.7 1.8E-15 3.9E-20 132.7 19.5 266 17-305 310-605 (902)
129 KOG0920 ATP-dependent RNA heli 99.7 1.4E-15 3E-20 140.8 18.4 273 16-309 218-547 (924)
130 COG4889 Predicted helicase [Ge 99.7 7.8E-17 1.7E-21 145.1 8.3 292 2-304 198-586 (1518)
131 KOG0953 Mitochondrial RNA heli 99.6 8.6E-15 1.9E-19 126.1 16.7 247 18-304 216-475 (700)
132 CHL00122 secA preprotein trans 99.6 8.3E-15 1.8E-19 134.7 17.6 242 16-266 116-490 (870)
133 KOG1123 RNA polymerase II tran 99.6 3.5E-15 7.5E-20 127.1 13.7 265 17-306 345-653 (776)
134 KOG0926 DEAH-box RNA helicase 99.6 8.3E-15 1.8E-19 131.1 16.4 273 19-305 307-703 (1172)
135 smart00490 HELICc helicase sup 99.6 8.1E-16 1.8E-20 104.4 7.8 80 213-294 2-82 (82)
136 KOG0924 mRNA splicing factor A 99.6 1.5E-14 3.2E-19 127.4 17.0 264 19-305 402-696 (1042)
137 KOG1000 Chromatin remodeling p 99.6 3.9E-14 8.4E-19 120.6 18.9 266 19-301 243-596 (689)
138 KOG1002 Nucleotide excision re 99.6 8.3E-14 1.8E-18 118.7 17.4 123 183-305 621-748 (791)
139 KOG4439 RNA polymerase II tran 99.6 4.7E-14 1E-18 124.6 15.2 124 183-306 730-858 (901)
140 PRK12902 secA preprotein trans 99.6 1.4E-13 3.1E-18 126.6 17.2 248 10-266 119-505 (939)
141 KOG0925 mRNA splicing factor A 99.5 2.1E-12 4.5E-17 110.1 17.2 215 72-306 132-387 (699)
142 KOG0386 Chromatin remodeling c 99.5 9.9E-14 2.1E-18 127.0 6.4 127 183-309 711-839 (1157)
143 PRK14873 primosome assembly pr 99.4 4.3E-12 9.3E-17 116.9 16.6 270 17-312 188-544 (665)
144 KOG0388 SNF2 family DNA-depend 99.4 3.7E-12 7.9E-17 113.1 14.2 124 183-307 1029-1155(1185)
145 KOG1015 Transcription regulato 99.4 9.2E-12 2E-16 113.7 15.7 121 183-303 1127-1272(1567)
146 smart00487 DEXDc DEAD-like hel 99.4 1E-11 2.2E-16 99.0 13.9 144 8-159 45-189 (201)
147 KOG0951 RNA helicase BRR2, DEA 99.4 4.3E-11 9.3E-16 112.4 19.2 276 13-314 1182-1502(1674)
148 cd00046 DEXDc DEAD-like helica 99.4 1E-11 2.2E-16 93.3 12.2 120 12-140 25-144 (144)
149 TIGR01407 dinG_rel DnaQ family 99.4 1E-10 2.2E-15 112.5 21.3 103 197-302 673-811 (850)
150 PRK12901 secA preprotein trans 99.3 3.3E-11 7.3E-16 112.5 12.2 171 132-309 565-744 (1112)
151 PRK07246 bifunctional ATP-depe 99.2 9E-10 1.9E-14 104.8 18.3 115 185-304 634-782 (820)
152 KOG2340 Uncharacterized conser 99.2 5.1E-10 1.1E-14 96.6 14.7 297 17-316 293-678 (698)
153 TIGR02562 cas3_yersinia CRISPR 99.2 9.8E-10 2.1E-14 103.4 15.4 92 202-295 760-881 (1110)
154 KOG0391 SNF2 family DNA-depend 99.2 1.4E-10 3.1E-15 108.1 9.6 125 182-306 1260-1387(1958)
155 TIGR03117 cas_csf4 CRISPR-asso 99.1 5.8E-08 1.3E-12 88.9 24.6 118 197-316 469-627 (636)
156 PF02399 Herpes_ori_bp: Origin 99.1 7.6E-09 1.6E-13 95.1 17.1 266 15-304 76-386 (824)
157 COG0653 SecA Preprotein transl 99.1 1.1E-09 2.3E-14 101.1 11.0 283 16-307 120-546 (822)
158 PF07652 Flavi_DEAD: Flaviviru 99.1 9.6E-10 2.1E-14 80.0 8.1 109 17-145 33-141 (148)
159 COG0610 Type I site-specific r 99.0 2.3E-08 4.9E-13 96.6 18.3 274 14-304 300-651 (962)
160 COG0553 HepA Superfamily II DN 98.9 2E-08 4.3E-13 98.2 11.5 125 182-306 692-822 (866)
161 KOG1016 Predicted DNA helicase 98.8 1.7E-07 3.7E-12 84.9 15.5 125 190-314 711-855 (1387)
162 KOG1001 Helicase-like transcri 98.8 1.1E-08 2.3E-13 94.3 7.7 119 183-301 523-643 (674)
163 PF00176 SNF2_N: SNF2 family N 98.8 4.6E-08 1E-12 83.3 9.6 113 19-143 60-175 (299)
164 PF04851 ResIII: Type III rest 98.7 2.4E-08 5.1E-13 78.6 6.0 111 19-142 52-184 (184)
165 PF13307 Helicase_C_2: Helicas 98.5 5.8E-07 1.3E-11 69.3 7.0 78 197-278 8-92 (167)
166 PRK08074 bifunctional ATP-depe 98.4 2.3E-06 5E-11 83.3 11.5 117 185-303 738-891 (928)
167 TIGR00596 rad1 DNA repair prot 98.4 8E-06 1.7E-10 77.4 13.8 66 68-141 8-73 (814)
168 COG1199 DinG Rad3-related DNA 98.4 4.2E-06 9.1E-11 79.2 11.9 104 197-304 478-616 (654)
169 PRK11747 dinG ATP-dependent DN 98.3 8.8E-06 1.9E-10 76.9 13.2 116 184-302 520-671 (697)
170 KOG0952 DNA/RNA helicase MER3/ 98.3 2.3E-07 5E-12 86.7 1.6 132 5-141 961-1094(1230)
171 TIGR00604 rad3 DNA repair heli 98.2 4.6E-05 1E-09 72.5 14.6 121 184-304 507-672 (705)
172 KOG0391 SNF2 family DNA-depend 97.8 4.2E-05 9.1E-10 72.9 6.7 118 8-141 654-776 (1958)
173 KOG0921 Dosage compensation co 97.8 9.9E-05 2.1E-09 68.7 8.2 105 198-305 643-773 (1282)
174 PF14617 CMS1: U3-containing 9 97.8 4.2E-05 9.1E-10 62.1 5.0 88 14-102 123-212 (252)
175 smart00492 HELICc3 helicase su 97.5 0.00045 9.7E-09 51.4 7.5 50 227-277 26-78 (141)
176 PF07517 SecA_DEAD: SecA DEAD- 97.5 0.0002 4.3E-09 59.0 5.4 96 7-104 108-210 (266)
177 smart00491 HELICc2 helicase su 97.4 0.00076 1.7E-08 50.3 6.8 43 235-277 31-79 (142)
178 PF13871 Helicase_C_4: Helicas 97.4 0.0006 1.3E-08 56.2 6.8 79 239-319 52-143 (278)
179 PF13872 AAA_34: P-loop contai 97.2 0.0032 6.9E-08 52.4 8.7 118 17-144 91-224 (303)
180 PRK05580 primosome assembly pr 97.0 0.0047 1E-07 58.6 9.8 99 174-275 166-266 (679)
181 COG1198 PriA Primosomal protei 97.0 0.0023 4.9E-08 60.1 7.0 97 174-273 221-319 (730)
182 PRK14873 primosome assembly pr 96.9 0.0049 1.1E-07 57.9 9.0 92 180-274 170-264 (665)
183 TIGR00595 priA primosomal prot 96.9 0.0036 7.8E-08 57.1 7.8 93 179-274 6-100 (505)
184 PRK10917 ATP-dependent DNA hel 96.8 0.0073 1.6E-07 57.4 9.3 98 174-273 286-389 (681)
185 TIGR00643 recG ATP-dependent D 96.4 0.017 3.7E-07 54.5 8.7 98 174-273 260-363 (630)
186 KOG0298 DEAD box-containing he 96.4 0.015 3.2E-07 56.9 8.0 118 17-147 420-557 (1394)
187 TIGR00580 mfd transcription-re 96.0 0.031 6.7E-07 54.7 8.6 98 174-273 476-579 (926)
188 PRK10689 transcription-repair 95.4 0.084 1.8E-06 53.1 9.0 98 174-273 625-728 (1147)
189 COG1110 Reverse gyrase [DNA re 95.4 0.055 1.2E-06 52.1 7.1 77 197-275 124-211 (1187)
190 KOG0298 DEAD box-containing he 95.3 0.018 4E-07 56.3 3.9 96 196-297 1219-1315(1394)
191 PRK08074 bifunctional ATP-depe 95.1 0.097 2.1E-06 51.8 8.3 38 68-105 432-469 (928)
192 COG0553 HepA Superfamily II DN 94.8 0.07 1.5E-06 52.6 6.7 112 17-141 390-511 (866)
193 COG1197 Mfd Transcription-repa 94.6 0.21 4.6E-06 49.2 8.9 91 181-273 626-722 (1139)
194 KOG0383 Predicted helicase [Ge 94.6 0.011 2.4E-07 55.0 0.4 80 183-263 616-696 (696)
195 PRK12900 secA preprotein trans 94.5 0.022 4.8E-07 54.9 2.3 86 17-104 179-271 (1025)
196 PF09848 DUF2075: Uncharacteri 94.5 0.17 3.6E-06 44.3 7.4 70 14-105 28-97 (352)
197 KOG0701 dsRNA-specific nucleas 94.3 0.021 4.6E-07 57.9 1.7 92 201-294 295-399 (1606)
198 COG1200 RecG RecG-like helicas 93.8 0.26 5.7E-06 45.7 7.4 86 185-273 299-390 (677)
199 KOG0331 ATP-dependent RNA heli 93.7 0.15 3.2E-06 46.1 5.6 84 4-97 328-415 (519)
200 COG0556 UvrB Helicase subunit 93.5 0.52 1.1E-05 42.5 8.5 120 15-150 444-567 (663)
201 PRK14701 reverse gyrase; Provi 93.3 0.38 8.2E-06 50.2 8.4 61 197-259 121-187 (1638)
202 PRK15483 type III restriction- 93.2 0.25 5.5E-06 48.2 6.6 71 250-320 501-582 (986)
203 TIGR01054 rgy reverse gyrase. 93.1 0.26 5.5E-06 49.9 6.8 61 197-259 120-187 (1171)
204 PF06733 DEAD_2: DEAD_2; Inte 93.1 0.044 9.6E-07 42.5 1.2 40 66-105 118-159 (174)
205 PRK12901 secA preprotein trans 93.0 0.054 1.2E-06 52.6 1.9 86 17-104 210-303 (1112)
206 PRK04537 ATP-dependent RNA hel 92.9 0.3 6.5E-06 45.7 6.6 83 8-100 248-334 (572)
207 KOG1133 Helicase of the DEAD s 92.7 0.44 9.6E-06 44.2 7.0 106 198-305 629-779 (821)
208 PF10593 Z1: Z1 domain; Inter 92.4 0.65 1.4E-05 38.0 7.1 87 222-313 110-200 (239)
209 KOG0338 ATP-dependent RNA heli 91.9 0.72 1.6E-05 41.4 7.1 69 199-273 253-333 (691)
210 TIGR00631 uvrb excinuclease AB 91.4 2.2 4.8E-05 40.6 10.4 78 15-102 440-521 (655)
211 PF00308 Bac_DnaA: Bacterial d 91.3 0.56 1.2E-05 37.9 5.6 117 21-145 10-145 (219)
212 smart00488 DEXDc2 DEAD-like he 90.9 0.2 4.4E-06 42.3 2.8 38 67-105 211-250 (289)
213 smart00489 DEXDc3 DEAD-like he 90.9 0.2 4.4E-06 42.3 2.8 38 67-105 211-250 (289)
214 PRK04837 ATP-dependent RNA hel 90.8 0.67 1.5E-05 41.6 6.3 78 12-99 250-331 (423)
215 PRK11057 ATP-dependent DNA hel 90.4 0.63 1.4E-05 43.9 5.9 82 8-99 227-312 (607)
216 PRK11776 ATP-dependent RNA hel 90.3 0.66 1.4E-05 42.2 5.8 82 9-100 234-319 (460)
217 PRK10590 ATP-dependent RNA hel 90.3 0.89 1.9E-05 41.3 6.6 75 13-97 241-319 (456)
218 PRK05642 DNA replication initi 89.9 1.5 3.2E-05 35.9 7.0 88 47-142 46-141 (234)
219 PHA03368 DNA packaging termina 89.9 2.8 6.1E-05 39.4 9.2 109 12-141 279-391 (738)
220 COG0513 SrmB Superfamily II DN 89.5 1 2.2E-05 41.6 6.4 81 7-97 263-347 (513)
221 PRK11192 ATP-dependent RNA hel 89.3 1.1 2.4E-05 40.4 6.5 75 13-97 241-319 (434)
222 KOG0333 U5 snRNP-like RNA heli 89.3 0.89 1.9E-05 40.9 5.5 81 6-96 506-590 (673)
223 PRK11634 ATP-dependent RNA hel 89.2 1.1 2.3E-05 42.5 6.4 81 7-97 235-319 (629)
224 COG4098 comFA Superfamily II D 88.8 3.1 6.6E-05 35.6 8.0 117 173-305 119-242 (441)
225 TIGR00614 recQ_fam ATP-depende 88.6 1.4 2.9E-05 40.3 6.5 60 198-259 51-110 (470)
226 KOG0347 RNA helicase [RNA proc 88.6 0.83 1.8E-05 41.4 4.8 52 201-258 266-321 (731)
227 PTZ00110 helicase; Provisional 88.6 1.5 3.3E-05 40.8 6.9 72 16-97 376-451 (545)
228 PRK09401 reverse gyrase; Revie 88.1 1.9 4.2E-05 43.8 7.6 79 178-258 103-187 (1176)
229 PRK11747 dinG ATP-dependent DN 88.1 0.52 1.1E-05 45.2 3.6 39 67-105 219-260 (697)
230 COG0593 DnaA ATPase involved i 87.7 4.1 8.8E-05 36.1 8.4 123 14-145 82-223 (408)
231 PRK12422 chromosomal replicati 87.6 6.7 0.00014 35.5 10.1 120 19-145 111-250 (445)
232 KOG0339 ATP-dependent RNA heli 86.9 2.5 5.5E-05 38.1 6.7 70 198-273 296-376 (731)
233 cd01524 RHOD_Pyr_redox Member 86.5 1.4 3E-05 29.7 4.1 38 196-233 49-86 (90)
234 PRK01297 ATP-dependent RNA hel 86.1 2.1 4.6E-05 39.1 6.3 79 11-99 329-411 (475)
235 TIGR01389 recQ ATP-dependent D 86.1 2.5 5.3E-05 39.9 6.8 60 198-259 53-112 (591)
236 PF12340 DUF3638: Protein of u 86.1 1.6 3.5E-05 35.2 4.7 67 14-81 67-144 (229)
237 cd00079 HELICc Helicase superf 86.0 3.2 6.9E-05 29.8 6.2 76 16-101 27-106 (131)
238 PF00270 DEAD: DEAD/DEAH box h 85.8 5.7 0.00012 30.1 7.8 95 173-273 17-125 (169)
239 PRK08084 DNA replication initi 85.5 2.8 6E-05 34.3 6.1 73 47-119 46-126 (235)
240 cd01523 RHOD_Lact_B Member of 85.2 2 4.3E-05 29.6 4.5 38 196-233 59-96 (100)
241 KOG1513 Nuclear helicase MOP-3 84.8 1.8 4E-05 41.2 5.1 76 241-318 850-938 (1300)
242 KOG0344 ATP-dependent RNA heli 84.5 3.1 6.7E-05 38.0 6.2 85 8-101 378-466 (593)
243 PF05127 Helicase_RecD: Helica 84.2 1.4 3E-05 34.2 3.5 99 17-141 26-124 (177)
244 cd00268 DEADc DEAD-box helicas 84.2 6.6 0.00014 31.0 7.7 72 197-274 68-150 (203)
245 PF05621 TniB: Bacterial TniB 83.9 1.4 3E-05 37.2 3.6 44 90-137 144-187 (302)
246 PF03354 Terminase_1: Phage Te 83.7 4.4 9.5E-05 37.1 7.2 30 14-43 51-80 (477)
247 PRK05298 excinuclease ABC subu 83.7 16 0.00034 35.1 10.9 77 16-102 445-525 (652)
248 PTZ00424 helicase 45; Provisio 83.6 2.9 6.2E-05 37.2 5.9 77 13-99 263-343 (401)
249 TIGR03420 DnaA_homol_Hda DnaA 83.2 5.9 0.00013 31.9 7.1 75 31-105 23-104 (226)
250 KOG0350 DEAD-box ATP-dependent 82.3 6.6 0.00014 35.5 7.2 75 199-275 216-303 (620)
251 PRK06893 DNA replication initi 82.3 5.5 0.00012 32.4 6.6 90 47-143 40-137 (229)
252 PRK12898 secA preprotein trans 82.2 13 0.00028 35.4 9.5 83 177-269 123-211 (656)
253 TIGR03158 cas3_cyano CRISPR-as 82.2 3.1 6.7E-05 36.5 5.4 74 14-98 269-342 (357)
254 KOG1132 Helicase of the DEAD s 81.7 20 0.00044 34.9 10.5 78 199-277 562-655 (945)
255 PF04364 DNA_pol3_chi: DNA pol 81.5 5.2 0.00011 29.6 5.6 81 184-277 15-96 (137)
256 COG3421 Uncharacterized protei 81.1 15 0.00033 34.2 9.1 41 65-105 79-126 (812)
257 PF02302 PTS_IIB: PTS system, 81.0 1.9 4.2E-05 29.0 3.0 57 19-78 1-58 (90)
258 COG3587 Restriction endonuclea 80.9 5.4 0.00012 38.5 6.5 73 250-322 483-569 (985)
259 PF13604 AAA_30: AAA domain; P 80.8 11 0.00024 29.7 7.7 40 89-139 91-130 (196)
260 PLN00206 DEAD-box ATP-dependen 80.6 4.7 0.0001 37.4 6.2 72 17-97 367-442 (518)
261 COG1111 MPH1 ERCC4-like helica 80.4 17 0.00036 33.1 9.0 83 10-101 359-453 (542)
262 cd05563 PTS_IIB_ascorbate PTS_ 80.1 8.2 0.00018 25.6 5.8 53 19-76 1-54 (86)
263 TIGR01970 DEAH_box_HrpB ATP-de 79.6 4 8.6E-05 40.0 5.5 74 17-97 209-286 (819)
264 cd00133 PTS_IIB PTS_IIB: subun 79.5 7.3 0.00016 25.3 5.4 54 19-76 1-55 (84)
265 KOG1513 Nuclear helicase MOP-3 79.2 4.7 0.0001 38.6 5.6 119 17-148 318-465 (1300)
266 PRK05728 DNA polymerase III su 79.0 17 0.00038 27.0 7.7 83 180-276 11-94 (142)
267 TIGR00604 rad3 DNA repair heli 79.0 1.1 2.4E-05 43.1 1.7 24 17-40 60-83 (705)
268 cd05566 PTS_IIB_galactitol PTS 79.0 5.7 0.00012 26.6 4.8 55 19-76 2-57 (89)
269 KOG0330 ATP-dependent RNA heli 78.7 12 0.00027 32.7 7.4 70 198-273 129-210 (476)
270 smart00450 RHOD Rhodanese Homo 78.6 4 8.8E-05 27.5 4.1 38 196-233 54-92 (100)
271 cd01520 RHOD_YbbB Member of th 78.1 6.6 0.00014 28.5 5.2 39 195-233 83-122 (128)
272 cd01529 4RHOD_Repeats Member o 77.8 4.5 9.7E-05 27.5 4.1 38 196-233 54-92 (96)
273 PRK11664 ATP-dependent RNA hel 77.5 5.4 0.00012 39.1 5.8 75 16-97 211-289 (812)
274 KOG1802 RNA helicase nonsense 77.5 3.4 7.3E-05 38.6 4.1 40 11-54 448-487 (935)
275 PRK14087 dnaA chromosomal repl 77.5 9.7 0.00021 34.6 7.1 99 21-120 117-236 (450)
276 PRK13767 ATP-dependent helicas 76.9 6.2 0.00013 39.2 6.1 77 17-99 284-366 (876)
277 PRK02362 ski2-like helicase; P 76.7 5.4 0.00012 38.8 5.6 92 172-273 41-143 (737)
278 KOG3089 Predicted DEAD-box-con 76.5 3.3 7.2E-05 32.8 3.3 34 67-100 196-229 (271)
279 cd01534 4RHOD_Repeat_3 Member 76.4 5.5 0.00012 27.0 4.2 37 197-233 55-91 (95)
280 PRK08727 hypothetical protein; 76.3 9.4 0.0002 31.1 6.2 59 47-105 42-107 (233)
281 KOG1132 Helicase of the DEAD s 76.2 2.2 4.7E-05 41.0 2.6 40 64-104 219-260 (945)
282 PF13086 AAA_11: AAA domain; P 76.1 1.2 2.6E-05 36.0 0.9 26 14-39 50-75 (236)
283 COG1204 Superfamily II helicas 75.7 9 0.0002 37.3 6.6 93 172-273 49-152 (766)
284 PHA03372 DNA packaging termina 75.6 19 0.00042 33.7 8.3 46 85-141 293-338 (668)
285 PLN03137 ATP-dependent DNA hel 75.2 9.7 0.00021 38.5 6.8 61 198-258 500-560 (1195)
286 cd01526 RHOD_ThiF Member of th 74.9 4.8 0.0001 28.9 3.7 38 196-233 70-109 (122)
287 cd01521 RHOD_PspE2 Member of t 74.9 7 0.00015 27.4 4.5 38 196-233 62-101 (110)
288 PRK04914 ATP-dependent helicas 74.2 9.9 0.00021 38.0 6.6 81 8-97 484-570 (956)
289 COG4626 Phage terminase-like p 74.0 8.8 0.00019 35.2 5.7 98 13-122 114-213 (546)
290 TIGR00362 DnaA chromosomal rep 74.0 11 0.00024 33.7 6.5 84 21-105 112-213 (405)
291 COG1435 Tdk Thymidine kinase [ 73.7 43 0.00092 26.5 9.0 71 45-121 32-107 (201)
292 TIGR01587 cas3_core CRISPR-ass 73.7 9.1 0.0002 33.4 5.9 75 16-99 221-303 (358)
293 PRK06620 hypothetical protein; 73.7 13 0.00027 30.0 6.2 81 17-103 14-97 (214)
294 cd00046 DEXDc DEAD-like helica 73.6 21 0.00046 25.4 7.1 76 178-259 8-88 (144)
295 PRK00149 dnaA chromosomal repl 73.6 13 0.00029 33.7 7.0 84 21-105 124-225 (450)
296 cd01518 RHOD_YceA Member of th 73.3 4.9 0.00011 27.6 3.3 38 196-233 59-97 (101)
297 COG1199 DinG Rad3-related DNA 73.3 3.2 7E-05 39.7 3.1 39 67-105 194-234 (654)
298 COG3587 Restriction endonuclea 73.1 8.7 0.00019 37.2 5.6 126 6-143 93-245 (985)
299 cd01527 RHOD_YgaP Member of th 72.7 7.8 0.00017 26.4 4.2 38 196-233 52-90 (99)
300 PF05872 DUF853: Bacterial pro 72.6 4.8 0.0001 36.0 3.7 48 89-143 252-303 (502)
301 PHA02653 RNA helicase NPH-II; 71.9 9.2 0.0002 36.6 5.7 73 16-96 394-469 (675)
302 PRK09694 helicase Cas3; Provis 71.9 13 0.00028 36.8 6.8 78 15-100 558-647 (878)
303 cd01447 Polysulfide_ST Polysul 71.8 6.2 0.00013 27.1 3.6 38 196-233 59-97 (103)
304 KOG0989 Replication factor C, 71.6 4.6 0.0001 34.1 3.2 45 89-142 127-171 (346)
305 PRK07413 hypothetical protein; 71.3 21 0.00047 31.4 7.3 55 89-149 123-177 (382)
306 cd01533 4RHOD_Repeat_2 Member 71.2 7 0.00015 27.3 3.8 37 197-233 65-103 (109)
307 PHA02533 17 large terminase pr 70.4 21 0.00046 33.2 7.6 78 15-103 102-181 (534)
308 KOG0332 ATP-dependent RNA heli 70.3 9.7 0.00021 33.1 4.8 70 18-97 331-404 (477)
309 COG0514 RecQ Superfamily II DN 70.1 10 0.00022 35.4 5.3 120 198-321 57-191 (590)
310 PRK14088 dnaA chromosomal repl 70.0 43 0.00094 30.4 9.3 83 21-105 107-208 (440)
311 PRK14086 dnaA chromosomal repl 69.9 21 0.00046 33.7 7.4 118 19-144 288-424 (617)
312 cd01444 GlpE_ST GlpE sulfurtra 69.4 9.4 0.0002 25.7 4.0 38 196-233 54-92 (96)
313 PRK00254 ski2-like helicase; P 69.2 19 0.0004 35.1 7.3 78 172-258 41-122 (720)
314 cd01528 RHOD_2 Member of the R 69.1 10 0.00022 26.0 4.2 37 197-233 57-94 (101)
315 TIGR00696 wecB_tagA_cpsF bacte 68.7 25 0.00054 27.3 6.6 69 181-254 34-104 (177)
316 PRK04296 thymidine kinase; Pro 68.5 55 0.0012 25.6 9.5 43 71-120 61-103 (190)
317 cd01532 4RHOD_Repeat_1 Member 68.4 9.4 0.0002 25.7 3.8 37 197-233 49-88 (92)
318 COG2927 HolC DNA polymerase II 68.4 29 0.00064 25.8 6.4 79 185-276 16-95 (144)
319 PRK13766 Hef nuclease; Provisi 68.3 29 0.00064 34.0 8.5 72 197-275 57-139 (773)
320 COG1875 NYN ribonuclease and A 68.3 2.3 4.9E-05 36.8 0.8 26 93-122 353-378 (436)
321 PRK15483 type III restriction- 68.0 16 0.00035 36.4 6.4 125 6-142 78-240 (986)
322 PF13401 AAA_22: AAA domain; P 67.8 18 0.0004 25.9 5.6 12 93-104 89-100 (131)
323 cd00561 CobA_CobO_BtuR ATP:cor 67.4 11 0.00024 28.6 4.3 53 89-147 93-145 (159)
324 PF05876 Terminase_GpA: Phage 67.2 17 0.00038 34.0 6.4 122 9-143 54-182 (557)
325 PRK06646 DNA polymerase III su 67.1 33 0.00071 26.0 6.7 84 179-276 10-93 (154)
326 cd01519 RHOD_HSP67B2 Member of 67.0 14 0.0003 25.4 4.6 38 196-233 64-102 (106)
327 PRK12323 DNA polymerase III su 66.5 13 0.00028 35.3 5.3 44 89-141 122-165 (700)
328 KOG0389 SNF2 family DNA-depend 66.4 28 0.00061 33.6 7.3 76 184-263 435-512 (941)
329 PRK12723 flagellar biosynthesi 66.4 97 0.0021 27.6 10.8 115 19-143 176-300 (388)
330 PHA03333 putative ATPase subun 66.3 66 0.0014 30.9 9.7 28 16-43 215-242 (752)
331 cd01525 RHOD_Kc Member of the 66.2 12 0.00025 25.8 4.1 36 198-233 65-101 (105)
332 PF13245 AAA_19: Part of AAA d 66.1 8.5 0.00018 25.1 3.0 21 17-37 42-62 (76)
333 PF05707 Zot: Zonular occluden 66.0 12 0.00026 29.4 4.5 53 91-148 79-133 (193)
334 TIGR01447 recD exodeoxyribonuc 66.0 35 0.00077 32.2 8.1 25 17-41 193-217 (586)
335 cd00158 RHOD Rhodanese Homolog 65.6 15 0.00033 24.0 4.4 38 196-233 48-86 (89)
336 cd01522 RHOD_1 Member of the R 65.6 20 0.00043 25.5 5.2 38 196-233 62-100 (117)
337 TIGR03817 DECH_helic helicase/ 65.5 13 0.00029 36.2 5.4 78 17-100 271-356 (742)
338 PF00581 Rhodanese: Rhodanese- 65.3 21 0.00046 24.6 5.3 51 183-233 52-108 (113)
339 PRK01172 ski2-like helicase; P 65.1 19 0.00041 34.7 6.4 77 173-258 40-119 (674)
340 PF13245 AAA_19: Part of AAA d 64.1 8.4 0.00018 25.1 2.7 43 176-218 16-62 (76)
341 TIGR00708 cobA cob(I)alamin ad 64.1 13 0.00029 28.6 4.2 54 89-148 95-148 (173)
342 PHA02558 uvsW UvsW helicase; P 64.0 15 0.00033 33.9 5.4 74 16-98 343-420 (501)
343 KOG0354 DEAD-box like helicase 63.2 18 0.0004 34.6 5.7 82 12-100 408-501 (746)
344 KOG0328 Predicted ATP-dependen 63.0 18 0.00039 30.3 4.9 70 18-97 267-340 (400)
345 PF12683 DUF3798: Protein of u 62.4 51 0.0011 27.4 7.3 88 186-281 50-144 (275)
346 cd01448 TST_Repeat_1 Thiosulfa 62.4 15 0.00032 26.2 4.1 38 196-233 77-116 (122)
347 cd06533 Glyco_transf_WecG_TagA 62.1 64 0.0014 24.8 7.7 70 180-254 31-103 (171)
348 PF07652 Flavi_DEAD: Flaviviru 61.9 5.6 0.00012 29.6 1.7 49 174-222 8-57 (148)
349 PF03808 Glyco_tran_WecB: Glyc 61.3 41 0.00089 25.9 6.6 71 180-255 33-106 (172)
350 cd01535 4RHOD_Repeat_4 Member 60.9 22 0.00048 26.5 4.9 37 197-233 48-85 (145)
351 PRK07414 cob(I)yrinic acid a,c 60.7 21 0.00046 27.7 4.7 53 89-147 113-165 (178)
352 PF11496 HDA2-3: Class II hist 60.5 96 0.0021 26.4 9.1 128 181-308 95-247 (297)
353 smart00487 DEXDc DEAD-like hel 60.3 74 0.0016 24.2 8.9 79 173-257 27-112 (201)
354 PRK09751 putative ATP-dependen 59.8 24 0.00051 37.2 6.2 70 198-273 37-130 (1490)
355 COG2519 GCD14 tRNA(1-methylade 59.7 29 0.00064 28.5 5.5 50 169-222 163-212 (256)
356 PRK05986 cob(I)alamin adenolsy 59.5 18 0.00038 28.5 4.2 55 89-149 113-167 (191)
357 PLN02160 thiosulfate sulfurtra 59.2 23 0.0005 26.1 4.6 38 196-233 79-117 (136)
358 TIGR01967 DEAH_box_HrpA ATP-de 59.1 22 0.00047 36.8 5.7 74 16-96 278-353 (1283)
359 KOG3201 Uncharacterized conser 59.1 45 0.00098 25.5 6.0 44 93-151 111-154 (201)
360 KOG0329 ATP-dependent RNA heli 59.0 17 0.00036 29.9 4.0 69 199-273 111-191 (387)
361 TIGR00963 secA preprotein tran 58.9 31 0.00068 33.3 6.4 55 197-259 96-154 (745)
362 PRK06526 transposase; Provisio 58.5 10 0.00022 31.5 2.9 39 66-104 125-172 (254)
363 KOG1133 Helicase of the DEAD s 58.3 10 0.00022 35.8 3.0 38 68-105 324-362 (821)
364 COG1203 CRISPR-associated heli 57.6 17 0.00038 35.3 4.7 57 14-74 437-501 (733)
365 PRK07764 DNA polymerase III su 57.4 22 0.00047 35.1 5.3 40 89-137 118-157 (824)
366 PRK06835 DNA replication prote 57.3 45 0.00098 28.9 6.7 92 47-145 184-294 (329)
367 cd01449 TST_Repeat_2 Thiosulfa 57.2 14 0.00031 26.0 3.3 37 196-232 76-113 (118)
368 PRK10875 recD exonuclease V su 57.0 53 0.0011 31.3 7.6 98 16-139 198-301 (615)
369 PRK10287 thiosulfate:cyanide s 56.4 24 0.00052 24.6 4.1 37 197-233 59-95 (104)
370 PRK08116 hypothetical protein; 56.2 58 0.0013 27.2 7.1 72 67-145 142-226 (268)
371 PF02572 CobA_CobO_BtuR: ATP:c 55.6 20 0.00044 27.6 3.9 54 89-148 94-147 (172)
372 COG0497 RecN ATPase involved i 55.2 1.7E+02 0.0036 27.5 10.1 85 91-193 453-537 (557)
373 PRK07003 DNA polymerase III su 55.0 9.7 0.00021 36.8 2.5 16 90-105 118-133 (830)
374 PF02562 PhoH: PhoH-like prote 54.8 20 0.00043 28.6 3.9 35 93-139 121-155 (205)
375 TIGR01073 pcrA ATP-dependent D 54.6 1.3E+02 0.0028 29.4 10.1 32 198-229 344-375 (726)
376 PF13173 AAA_14: AAA domain 54.0 15 0.00033 26.5 2.9 25 91-117 61-85 (128)
377 PRK08058 DNA polymerase III su 53.9 1.1E+02 0.0024 26.5 8.6 43 88-139 107-149 (329)
378 COG2109 BtuR ATP:corrinoid ade 53.7 36 0.00078 26.7 4.9 54 90-149 121-174 (198)
379 PRK11131 ATP-dependent RNA hel 53.7 34 0.00073 35.5 6.0 75 15-96 284-360 (1294)
380 TIGR02981 phageshock_pspE phag 53.6 28 0.00061 24.1 4.1 36 197-232 57-92 (101)
381 PRK14958 DNA polymerase III su 53.6 27 0.00059 32.3 5.1 40 90-138 118-157 (509)
382 KOG1805 DNA replication helica 53.4 22 0.00047 35.2 4.4 80 17-104 713-809 (1100)
383 PF13177 DNA_pol3_delta2: DNA 53.3 42 0.00091 25.5 5.4 43 90-141 101-143 (162)
384 COG0607 PspE Rhodanese-related 52.9 23 0.0005 24.4 3.7 38 196-233 59-97 (110)
385 COG1444 Predicted P-loop ATPas 52.8 81 0.0018 30.7 8.0 97 17-141 261-357 (758)
386 PRK13104 secA preprotein trans 52.8 43 0.00093 33.2 6.4 55 197-259 122-180 (896)
387 PRK11054 helD DNA helicase IV; 52.6 2.3E+02 0.005 27.6 13.8 35 17-51 241-275 (684)
388 PRK11773 uvrD DNA-dependent he 52.6 1.5E+02 0.0032 29.0 10.1 32 198-229 347-378 (721)
389 PRK08903 DnaA regulatory inact 52.5 1E+02 0.0023 24.7 8.0 55 47-105 43-104 (227)
390 cd00009 AAA The AAA+ (ATPases 52.4 64 0.0014 23.1 6.3 15 89-103 82-96 (151)
391 PRK04195 replication factor C 52.0 1.4E+02 0.0031 27.5 9.5 43 91-140 98-140 (482)
392 KOG0385 Chromatin remodeling c 51.6 66 0.0014 31.2 7.0 69 186-258 205-275 (971)
393 PRK09189 uroporphyrinogen-III 51.1 64 0.0014 26.3 6.5 71 185-258 105-178 (240)
394 cd05567 PTS_IIB_mannitol PTS_I 51.1 50 0.0011 21.9 4.9 72 19-100 2-74 (87)
395 KOG0953 Mitochondrial RNA heli 50.7 1.5E+02 0.0034 27.7 9.0 135 4-155 344-488 (700)
396 COG1201 Lhr Lhr-like helicases 50.5 34 0.00073 33.6 5.3 68 200-273 75-155 (814)
397 PRK10310 PTS system galactitol 50.4 46 0.00099 22.7 4.6 55 19-76 4-59 (94)
398 PRK00162 glpE thiosulfate sulf 50.2 36 0.00079 23.6 4.3 38 196-233 56-94 (108)
399 PRK03692 putative UDP-N-acetyl 49.2 85 0.0018 25.9 6.8 70 180-254 90-161 (243)
400 TIGR02760 TraI_TIGR conjugativ 49.0 4.3E+02 0.0092 29.6 14.3 117 88-220 526-648 (1960)
401 KOG0343 RNA Helicase [RNA proc 48.6 39 0.00084 31.3 5.0 56 196-258 139-198 (758)
402 smart00115 CASc Caspase, inter 48.3 1.3E+02 0.0029 24.6 7.9 49 197-246 7-66 (241)
403 KOG0336 ATP-dependent RNA heli 48.1 1.1E+02 0.0025 27.3 7.5 70 198-273 294-373 (629)
404 TIGR00853 pts-lac PTS system, 47.9 61 0.0013 22.1 4.9 60 17-79 3-62 (95)
405 PRK14951 DNA polymerase III su 47.9 36 0.00078 32.3 5.0 40 89-137 122-161 (618)
406 TIGR03865 PQQ_CXXCW PQQ-depend 47.8 38 0.00083 25.8 4.4 38 196-233 114-153 (162)
407 TIGR01547 phage_term_2 phage t 47.4 91 0.002 27.7 7.4 119 16-151 31-151 (396)
408 cd05564 PTS_IIB_chitobiose_lic 47.2 44 0.00096 22.8 4.2 79 20-101 2-81 (96)
409 TIGR02621 cas3_GSU0051 CRISPR- 47.0 33 0.00072 33.8 4.7 41 15-61 270-310 (844)
410 cd01530 Cdc25 Cdc25 phosphatas 46.6 40 0.00086 24.2 4.1 38 196-233 66-117 (121)
411 PF15586 Imm47: Immunity prote 46.5 38 0.00082 24.2 3.8 33 68-101 45-77 (116)
412 KOG0342 ATP-dependent RNA heli 45.2 82 0.0018 28.7 6.4 56 197-258 153-213 (543)
413 COG2812 DnaX DNA polymerase II 44.9 29 0.00062 32.1 3.7 43 89-140 117-159 (515)
414 TIGR01075 uvrD DNA helicase II 44.5 3.1E+02 0.0068 26.8 11.2 32 198-229 342-373 (715)
415 COG0634 Hpt Hypoxanthine-guani 44.5 41 0.00088 26.0 3.9 85 181-266 18-109 (178)
416 COG3973 Superfamily I DNA and 44.4 1.6E+02 0.0036 27.9 8.2 63 197-276 654-716 (747)
417 PRK08181 transposase; Validate 44.3 42 0.00091 28.1 4.4 72 65-144 132-213 (269)
418 PRK12899 secA preprotein trans 44.1 85 0.0018 31.4 6.9 74 177-259 114-192 (970)
419 PF02463 SMC_N: RecF/RecN/SMC 43.7 20 0.00043 28.7 2.4 42 90-139 157-198 (220)
420 KOG0349 Putative DEAD-box RNA 43.0 33 0.00071 30.6 3.6 61 14-75 502-566 (725)
421 cd05568 PTS_IIB_bgl_like PTS_I 42.9 72 0.0016 20.7 4.7 52 19-75 2-54 (85)
422 PF14417 MEDS: MEDS: MEthanoge 42.9 78 0.0017 24.8 5.6 52 170-221 19-70 (191)
423 PRK09590 celB cellobiose phosp 42.7 66 0.0014 22.5 4.5 82 19-101 3-85 (104)
424 PRK05320 rhodanese superfamily 42.6 36 0.00077 28.3 3.7 38 197-234 174-212 (257)
425 PRK10536 hypothetical protein; 42.4 32 0.0007 28.5 3.4 26 93-122 178-203 (262)
426 PRK07994 DNA polymerase III su 42.4 46 0.001 31.8 4.8 28 89-120 117-144 (647)
427 PHA02544 44 clamp loader, smal 42.2 28 0.00061 29.7 3.2 14 90-103 99-112 (316)
428 KOG0345 ATP-dependent RNA heli 42.1 74 0.0016 28.9 5.6 82 8-97 246-331 (567)
429 PRK14956 DNA polymerase III su 42.1 45 0.00098 30.5 4.5 26 90-119 120-145 (484)
430 PLN03025 replication factor C 41.9 33 0.00071 29.5 3.6 16 90-105 98-113 (319)
431 PRK11784 tRNA 2-selenouridine 41.9 1.6E+02 0.0034 25.8 7.7 49 197-246 87-136 (345)
432 PF07279 DUF1442: Protein of u 41.5 80 0.0017 25.4 5.2 24 68-98 98-122 (218)
433 TIGR00678 holB DNA polymerase 41.4 54 0.0012 25.5 4.5 28 89-120 94-121 (188)
434 PRK09200 preprotein translocas 41.4 77 0.0017 31.2 6.2 54 197-258 118-176 (790)
435 KOG0340 ATP-dependent RNA heli 41.3 39 0.00085 29.4 3.7 54 199-258 76-133 (442)
436 PTZ00293 thymidine kinase; Pro 41.2 70 0.0015 25.7 5.0 25 90-120 76-100 (211)
437 TIGR01198 pgl 6-phosphoglucono 40.9 86 0.0019 25.6 5.7 28 74-101 39-66 (233)
438 KOG0352 ATP-dependent DNA heli 40.6 36 0.00077 30.4 3.5 61 198-258 61-121 (641)
439 cd01445 TST_Repeats Thiosulfat 40.6 1E+02 0.0022 22.7 5.6 49 183-233 82-134 (138)
440 PF12846 AAA_10: AAA-like doma 40.4 26 0.00056 29.4 2.8 32 90-121 219-251 (304)
441 PRK09112 DNA polymerase III su 40.2 50 0.0011 28.9 4.4 42 89-139 139-180 (351)
442 cd05565 PTS_IIB_lactose PTS_II 40.1 58 0.0013 22.5 3.9 81 19-102 2-83 (99)
443 PRK14960 DNA polymerase III su 40.1 64 0.0014 31.0 5.3 16 90-105 117-132 (702)
444 COG2256 MGS1 ATPase related to 39.8 33 0.0007 30.4 3.1 37 93-142 106-142 (436)
445 TIGR03167 tRNA_sel_U_synt tRNA 39.6 72 0.0016 27.4 5.2 38 196-233 72-110 (311)
446 cd01400 6PGL 6PGL: 6-Phosphogl 39.5 87 0.0019 25.2 5.5 56 28-101 6-62 (219)
447 PRK14952 DNA polymerase III su 39.5 64 0.0014 30.5 5.2 40 89-137 116-155 (584)
448 PF11019 DUF2608: Protein of u 39.2 2.2E+02 0.0048 23.6 9.5 52 178-229 158-209 (252)
449 KOG0335 ATP-dependent RNA heli 39.1 70 0.0015 29.2 5.1 70 18-97 338-411 (482)
450 PRK14949 DNA polymerase III su 39.0 58 0.0013 32.4 4.9 15 90-104 118-132 (944)
451 PF00004 AAA: ATPase family as 39.0 39 0.00085 24.0 3.2 16 92-107 59-74 (132)
452 KOG1131 RNA polymerase II tran 38.5 22 0.00048 32.5 2.0 36 68-103 200-237 (755)
453 TIGR02881 spore_V_K stage V sp 38.4 54 0.0012 27.2 4.3 13 93-105 107-119 (261)
454 PRK01415 hypothetical protein; 38.3 43 0.00092 27.7 3.5 38 196-233 169-207 (247)
455 PF01182 Glucosamine_iso: Gluc 37.6 76 0.0016 25.1 4.8 56 28-101 4-62 (199)
456 PRK04132 replication factor C 37.1 55 0.0012 32.4 4.5 15 91-105 630-644 (846)
457 PF02602 HEM4: Uroporphyrinoge 37.0 88 0.0019 25.1 5.3 70 184-258 104-176 (231)
458 PRK14959 DNA polymerase III su 36.8 67 0.0014 30.6 4.9 28 89-120 117-144 (624)
459 PF00265 TK: Thymidine kinase; 36.8 57 0.0012 25.3 3.9 26 91-121 76-101 (176)
460 PF13307 Helicase_C_2: Helicas 36.6 13 0.00028 28.5 0.3 26 17-42 9-34 (167)
461 PF08704 GCD14: tRNA methyltra 36.2 64 0.0014 26.6 4.2 52 169-223 113-164 (247)
462 PRK14969 DNA polymerase III su 35.8 69 0.0015 29.9 4.8 41 89-138 117-157 (527)
463 cd03031 GRX_GRX_like Glutaredo 35.0 1.9E+02 0.0042 21.6 7.0 46 200-245 1-53 (147)
464 COG1205 Distinct helicase fami 34.9 1.3E+02 0.0028 30.1 6.7 82 172-259 87-176 (851)
465 PRK14964 DNA polymerase III su 34.8 90 0.0019 28.8 5.3 29 89-121 114-142 (491)
466 COG2909 MalT ATP-dependent tra 34.7 44 0.00096 32.7 3.4 42 93-142 131-172 (894)
467 PF13167 GTP-bdg_N: GTP-bindin 34.7 1.2E+02 0.0027 20.7 4.8 37 209-245 44-80 (95)
468 PF00106 adh_short: short chai 34.3 1E+02 0.0023 22.9 5.0 61 199-259 26-89 (167)
469 cd03418 GRX_GRXb_1_3_like Glut 34.2 1.2E+02 0.0026 19.0 6.8 45 201-245 2-47 (75)
470 PHA00350 putative assembly pro 34.0 59 0.0013 29.0 3.9 14 93-106 83-96 (399)
471 TIGR01407 dinG_rel DnaQ family 33.5 51 0.0011 32.9 3.8 25 17-41 674-698 (850)
472 cd06578 HemD Uroporphyrinogen- 33.3 2E+02 0.0042 23.0 6.8 43 184-227 108-150 (239)
473 PTZ00112 origin recognition co 33.1 4.9E+02 0.011 26.6 9.8 17 90-106 868-884 (1164)
474 KOG0334 RNA helicase [RNA proc 33.0 1.3E+02 0.0027 30.3 6.1 55 198-258 438-496 (997)
475 cd01446 DSP_MapKP N-terminal r 32.7 1.5E+02 0.0032 21.4 5.4 37 197-233 74-122 (132)
476 cd00032 CASc Caspase, interleu 32.5 2.8E+02 0.0061 22.7 9.9 49 197-246 8-68 (243)
477 PF12689 Acid_PPase: Acid Phos 32.4 2.3E+02 0.0051 21.8 9.3 133 95-246 35-168 (169)
478 PRK08451 DNA polymerase III su 32.2 77 0.0017 29.6 4.5 42 89-139 115-156 (535)
479 COG3972 Superfamily I DNA and 32.2 2.1E+02 0.0046 26.5 6.9 31 11-41 200-230 (660)
480 PLN02723 3-mercaptopyruvate su 31.5 75 0.0016 27.4 4.1 39 195-233 266-305 (320)
481 COG2242 CobL Precorrin-6B meth 31.4 2.6E+02 0.0056 22.0 6.9 48 175-223 106-153 (187)
482 PRK13342 recombination factor 31.3 1.2E+02 0.0027 27.1 5.6 14 91-104 92-105 (413)
483 PRK14965 DNA polymerase III su 31.3 98 0.0021 29.3 5.1 28 89-120 117-144 (576)
484 KOG0346 RNA helicase [RNA proc 31.2 60 0.0013 29.2 3.4 62 197-264 92-164 (569)
485 COG1922 WecG Teichoic acid bio 31.1 3.1E+02 0.0067 22.8 7.6 149 68-255 15-166 (253)
486 PF04273 DUF442: Putative phos 30.9 92 0.002 22.0 3.8 34 181-217 72-105 (110)
487 PRK05928 hemD uroporphyrinogen 30.6 1.6E+02 0.0034 23.9 5.8 71 185-258 112-185 (249)
488 PF13086 AAA_11: AAA domain; P 30.6 92 0.002 24.7 4.4 48 173-220 20-75 (236)
489 PF02142 MGS: MGS-like domain 30.5 50 0.0011 22.4 2.4 43 215-259 23-69 (95)
490 cd03027 GRX_DEP Glutaredoxin ( 30.4 1.4E+02 0.0031 18.7 6.9 55 200-256 2-57 (73)
491 PRK00142 putative rhodanese-re 30.4 72 0.0016 27.4 3.8 38 197-234 170-208 (314)
492 PF01751 Toprim: Toprim domain 30.3 66 0.0014 22.0 3.0 63 201-265 1-75 (100)
493 PRK11493 sseA 3-mercaptopyruva 30.0 54 0.0012 27.6 3.0 38 196-233 229-267 (281)
494 PRK12377 putative replication 29.8 2.3E+02 0.005 23.4 6.5 57 47-103 102-175 (248)
495 KOG0327 Translation initiation 29.7 1.3E+02 0.0029 26.5 5.1 75 16-100 262-340 (397)
496 PRK08691 DNA polymerase III su 29.5 56 0.0012 31.5 3.2 41 89-138 117-157 (709)
497 TIGR03346 chaperone_ClpB ATP-d 29.5 72 0.0016 31.8 4.1 15 92-106 267-281 (852)
498 COG1168 MalY Bifunctional PLP- 29.2 41 0.00088 29.5 2.1 95 199-296 159-268 (388)
499 PRK05597 molybdopterin biosynt 28.8 85 0.0018 27.5 4.0 38 196-233 312-350 (355)
500 PRK00411 cdc6 cell division co 28.7 1.1E+02 0.0023 27.2 4.8 13 92-104 139-151 (394)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-53 Score=362.62 Aligned_cols=301 Identities=36% Similarity=0.573 Sum_probs=269.9
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
..+.++|++|||+|||+||.|+.+.+..+....+++..+++||.....+...+..+.+|+|+||+++.+++..+...+++
T Consensus 160 ~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 160 LSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred ccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccc
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc-ccccccc
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL-HKKIASA 170 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 170 (323)
+.++|+||||+|++.+|.+.++.|+..++... .|.+++|||++..+..+...++..+..+..... .......
T Consensus 240 v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~-------rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~ 312 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMGFEPQIRKILSQIPRPD-------RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHN 312 (519)
T ss_pred eeEEEeccHHhhhccccHHHHHHHHHhcCCCc-------ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcc
Confidence 99999999999999999999999999995432 289999999999999999999998877666544 2222233
Q ss_pred eeeEEeccCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
..+.....+...|...|.++|.... +.++|+||||++.+.|+++...++..+.++..+||+.++.+|+.+++.|++ |
T Consensus 313 i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre--G 390 (519)
T KOG0331|consen 313 IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE--G 390 (519)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc--C
Confidence 3334444446677777777776654 466899999999999999999999888999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
+..|||||+++++|+|+ ++++||+||+|.+..+|.||+||.||.|+.|.+++|++..+....+.+.+.++..
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999653
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-51 Score=334.03 Aligned_cols=300 Identities=36% Similarity=0.587 Sum_probs=278.9
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMV 88 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~ 88 (323)
+++.+++.++++||+|||+|+.|+.+.+..++...|+++..+.||.+...+...+...++|+|+||+++++.+.+ +.+.
T Consensus 122 ~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~ 201 (476)
T KOG0330|consen 122 RLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFS 201 (476)
T ss_pred HHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCcc
Confidence 344567779999999999999999999999999999999999999999888888888899999999999999985 6788
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+..++++|+||||++++..|.+.+..|+..++... |.+++|||++..+.+.....+..+..+.........+
T Consensus 202 le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~er--------qt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 202 LEQLKFLVLDEADRLLDMDFEEELDYILKVIPRER--------QTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred HHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccc--------eEEEEEeecchhhHHHHhhccCCCeEEeccchhcchH
Confidence 99999999999999999999999999999998644 9999999999999998888888888888888888888
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
...++|..++. ..|...|..++++. .+..+||||++...+..++-.|+..|+.+..+||.|+...|...++.|++
T Consensus 274 ~lkQ~ylfv~~-k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-- 348 (476)
T KOG0330|consen 274 HLKQTYLFVPG-KDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-- 348 (476)
T ss_pred HhhhheEeccc-cccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc--
Confidence 88888888774 55888899999876 66899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|.+.||+||+++++|+|+ .+++|||||.|.+..+|++|+||.+|.|..|.+|.+++.-|.+...+|+..+++..
T Consensus 349 ~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 349 GARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999864
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-49 Score=310.41 Aligned_cols=294 Identities=29% Similarity=0.469 Sum_probs=275.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+..++|||.||++|+.|+.+.+..++...++.++.+.||.+..+..+.+..+.+++.+||++.++++.+..+..+.++
T Consensus 92 ~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 92 SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccccee
Confidence 45668999999999999999999999999999999999999998888888888899999999999999999999999999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
++|+||+|.+++.+|.+.+-.+...++..+ |.+++|||++.+..+....++..++.+.......+..++.++
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp~~~--------Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLPPGA--------QVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCCCCc--------eEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 999999999999999999999999998554 999999999999999999999999988877777888889999
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
|+.+...+.|.+.|.++-... .-.+.+|||+++..+..+.+.+++.++.+...||+|+.++|+++..+|+. |+-+|
T Consensus 244 ~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs--g~Srv 319 (400)
T KOG0328|consen 244 FVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS--GKSRV 319 (400)
T ss_pred eeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc--CCceE
Confidence 999998888999988876543 34688999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|++|++..+|+|+ .+++||+||+|.+...|++|+||+||.|.+|.++-|+...|...++.|++++.
T Consensus 320 LitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 320 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred EEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999999999999999999999999999875
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.8e-48 Score=352.29 Aligned_cols=297 Identities=33% Similarity=0.544 Sum_probs=256.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..++++|||+||++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||++|.+++......++++++
T Consensus 201 ~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 45789999999999999999999999988889999999998877776677778999999999999999988888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-ceeeeccccc-ccccccee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLH-KKIASARH 172 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 172 (323)
||+||||++.+.+|.+.+..++..+... .|++++|||++.....+....+.. +..+...... .....+.+
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~--------~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPD--------RQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCC--------CeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeE
Confidence 9999999999999999999998877543 399999999999888877766642 3333332222 12233444
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+..+ ....|...|.+++......+.++||||++++.|+.+++.|+..++.+..+||+++..+|..++++|++ |+.+
T Consensus 353 ~~~~~-~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~--G~~~ 429 (545)
T PTZ00110 353 EVFVV-EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSP 429 (545)
T ss_pred EEEEE-echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc--CCCc
Confidence 44333 35667888888887765567899999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|||||+++++|+|+ ++++||+||+|.+...|.||+||+||.|+.|.+++|+++.+...++.+.+.++..+
T Consensus 430 ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 430 IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999887654
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-48 Score=348.46 Aligned_cols=290 Identities=37% Similarity=0.598 Sum_probs=265.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 20 AVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 20 ~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
+||++||++||.|+.+.++.+.... ++++..++||.....+...+..+++|+|+||+++++++.+..+.++.++++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999999988 799999999999888888787789999999999999999999999999999999
Q ss_pred chhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc--ccccceeeEEe
Q 047490 99 EADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK--KIASARHDFIK 176 (323)
Q Consensus 99 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 176 (323)
|||+|++.+|.+.+..|+..++.. .|.+++|||++.....+...++.++..+....... ....+.+.++.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~--------~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~ 253 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPD--------RQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLE 253 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcc--------cEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEE
Confidence 999999999999999999999863 39999999999999999999999887666653333 56677777777
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
+.....|...|..++... ...++||||++...++.+++.|...|+.+..+||++++.+|.++++.|++ |+.+||||
T Consensus 254 v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVa 329 (513)
T COG0513 254 VESEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD--GELRVLVA 329 (513)
T ss_pred eCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEE
Confidence 775556999999999764 44589999999999999999999999999999999999999999999999 99999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHhc
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRKN 321 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~~ 321 (323)
|+++++|+|+ ++++||+||.|.+...|.||+||+||.|..|.+++|+++. |...+..+++.+++.
T Consensus 330 TDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 330 TDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred echhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999 9999999999999999999999999999999999999986 899999999987654
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.6e-47 Score=341.76 Aligned_cols=296 Identities=28% Similarity=0.487 Sum_probs=253.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++|||+||++|+.|+.+.++.+....++++..++||.....+...+..+++|+|+||++|.+++.+....++++++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 46789999999999999999999999888888888899987776666667778999999999999999988888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||||++.+++|.+.+..++..+.. .|++++|||+++............+..+...........+.+.+
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~~---------~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~ 344 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALSQ---------PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLA 344 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCCC---------CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEE
Confidence 999999999999999988888877643 38999999999998887777776665554443333333344444
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
..+. ...|...+.+++........++||||+++..++.+++.|.. .+..+..+||+++..+|..+++.|++ |+.+|
T Consensus 345 ~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~I 421 (518)
T PLN00206 345 IWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPV 421 (518)
T ss_pred Eecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCE
Confidence 4443 45577778887765444456899999999999999999975 58899999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
||||+++++|+|+ ++++||+||+|.+..+|.||+||+||.|..|.+++|++..|...+..+.+.++..+
T Consensus 422 LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~ 491 (518)
T PLN00206 422 IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG 491 (518)
T ss_pred EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC
Confidence 9999999999999 99999999999999999999999999999999999999999999999999888654
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-47 Score=337.11 Aligned_cols=294 Identities=30% Similarity=0.477 Sum_probs=253.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.++++|||+||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||+++.+++....+.+++++++
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEE
Confidence 46899999999999999999999999888999999999987766666677788999999999999998888889999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||||++.++++...+..++..++.. ...+.+++|||++..........+..+..+...........+.+.+.
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~ 235 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPA------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF 235 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCc------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE
Confidence 999999999999999888888777532 13367999999998888877777776655544333333333334333
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
......|...+..++... ...++||||++...|+.+++.|...+..+..+||+|+..+|..++++|++ |+++|||
T Consensus 236 -~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLV 310 (423)
T PRK04837 236 -YPSNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR--GDLDILV 310 (423)
T ss_pred -eCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc--CCCcEEE
Confidence 334566888888877653 46799999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||+++++|+|+ ++++||+||+|.+...|.||+||+||.|+.|.+++|+++.|...+..+++.++.
T Consensus 311 aTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 311 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred EechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 99999999999 999999999999999999999999999999999999999999999998877654
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.2e-47 Score=337.91 Aligned_cols=292 Identities=34% Similarity=0.566 Sum_probs=256.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+++|||+||++|+.|+.+.++.+.... ++++..++|+.....+...+..+++|+|+||+++.+++.++...+++++
T Consensus 70 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~ 149 (460)
T PRK11776 70 RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALN 149 (460)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCC
Confidence 346789999999999999999999987644 6789999999888777777778899999999999999998888899999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
++|+||+|++.+.+|...+..++..++.. .|++++|||+++........++..+..+...... ....+.+.
T Consensus 150 ~lViDEad~~l~~g~~~~l~~i~~~~~~~--------~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~ 220 (460)
T PRK11776 150 TLVLDEADRMLDMGFQDAIDAIIRQAPAR--------RQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQR 220 (460)
T ss_pred EEEEECHHHHhCcCcHHHHHHHHHhCCcc--------cEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEE
Confidence 99999999999999999999998887654 3999999999999988888887777665544332 33345566
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
++... ...|...+..++... .+.++||||+++..++.+++.|.+.+..+..+||+|++.+|+.+++.|++ |+.+|
T Consensus 221 ~~~~~-~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~v 295 (460)
T PRK11776 221 FYEVS-PDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN--RSCSV 295 (460)
T ss_pred EEEeC-cHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCcE
Confidence 66555 455888888888654 45789999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||||+++++|+|+ ++++||+|+.|.+...|.||+||+||.|..|.+++++++.|...++.+++.++.
T Consensus 296 LVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 296 LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999887754
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-46 Score=332.94 Aligned_cols=294 Identities=33% Similarity=0.519 Sum_probs=253.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+.+++||++||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|.+++....+.++++++
T Consensus 71 ~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~ 150 (434)
T PRK11192 71 SGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVET 150 (434)
T ss_pred CCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCE
Confidence 34579999999999999999999999988899999999998877777777778899999999999999988888899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHHHhcCceeeeccccccccccceee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
||+||||++.+.+|...+..+...+... .|++++|||++.. ...+....+..+..+...........+.+.
T Consensus 151 lViDEah~~l~~~~~~~~~~i~~~~~~~--------~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 151 LILDEADRMLDMGFAQDIETIAAETRWR--------KQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQW 222 (434)
T ss_pred EEEECHHHHhCCCcHHHHHHHHHhCccc--------cEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEE
Confidence 9999999999999999998887766543 3899999999754 555556666666555444443444445555
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
+........|...+..++... ...++||||+++..++.+++.|+..++.+..+||+|+..+|..+++.|++ |+++|
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~v 298 (434)
T PRK11192 223 YYRADDLEHKTALLCHLLKQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD--GRVNV 298 (434)
T ss_pred EEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC--CCCcE
Confidence 555555567777777777642 46799999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||||+++++|+|+ ++++||+|++|.+...|.||+||+||.|..|.++++++..|...+..+++.+..
T Consensus 299 LVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999999999999999887754
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.6e-46 Score=334.86 Aligned_cols=291 Identities=33% Similarity=0.498 Sum_probs=250.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
.+++|||+||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|.+++......+++++++|
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEE
Confidence 45899999999999999999999998888999999999887776666777889999999999999888888899999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||||++.++++...+..++..++.. .|.+++|||+++.........+..+..+...........+.+.+..
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~--------~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 226 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAK--------RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF 226 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCcc--------CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEE
Confidence 99999999999988888888777543 3899999999998888777777666555443333333344444443
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
.....+...+..++... ...++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|++ |+++||||
T Consensus 227 -~~~~~k~~~l~~l~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVa 301 (456)
T PRK10590 227 -VDKKRKRELLSQMIGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIRVLVA 301 (456)
T ss_pred -cCHHHHHHHHHHHHHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEE
Confidence 33455666666666542 45799999999999999999999999999999999999999999999999 99999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+++++|+|+ ++++||+|++|.+..+|.||+||+||.|..|.++++++..|...++.+++.++.
T Consensus 302 Tdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 302 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred ccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999999999999999999999999999999999999988764
No 11
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-47 Score=302.05 Aligned_cols=302 Identities=31% Similarity=0.489 Sum_probs=270.2
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+.+...-.+...-+++|+|||++||-|+...++++.+..++++...+||++..+..-.+.+..+++|+||++++++..++
T Consensus 142 P~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 142 PVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred hhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 33444445566789999999999999999999999999999999999999988888778888999999999999999999
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.-.+++...+|+||||.+++..|.+.+..++..++... |++++|||+|-....+.++++..+..+..- .+.
T Consensus 222 Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r--------QillySATFP~tVk~Fm~~~l~kPy~INLM-~eL 292 (459)
T KOG0326|consen 222 VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER--------QILLYSATFPLTVKGFMDRHLKKPYEINLM-EEL 292 (459)
T ss_pred cccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc--------eeeEEecccchhHHHHHHHhccCcceeehh-hhh
Confidence 88899999999999999999999999999999998754 999999999999999999999998876554 345
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
...++.++|..+. ...|+..|-.++... +-.+.|||||+...+|.+++.+.+.|+++.++|+.|.+++|..+.++|+
T Consensus 293 tl~GvtQyYafV~-e~qKvhCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr 369 (459)
T KOG0326|consen 293 TLKGVTQYYAFVE-ERQKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR 369 (459)
T ss_pred hhcchhhheeeec-hhhhhhhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh
Confidence 5667777776665 455666555555432 3357899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
+ |.|+.||||+.+.+|+|+ .++.||+||.|++..+|.+|+||+||.|..|.++.+++-.|...+.+|++.|+..
T Consensus 370 ~--G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 370 N--GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred c--cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 9 999999999999999999 9999999999999999999999999999999999999999999999999999753
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-46 Score=339.77 Aligned_cols=293 Identities=34% Similarity=0.506 Sum_probs=252.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~v 95 (323)
.+++|||+||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|++++... .+.++.++++
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 589999999999999999999999988899999999998877777777778899999999999988765 4668899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.+.+|...+..++..++... ..|++++|||++..........+..+..+...........+.+.++
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~ 237 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERG------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY 237 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhccccc------CceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEE
Confidence 9999999999999999998888876531 3489999999998888877777766544433322223333444444
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
. .....|...+..++... .+.++||||++...++.+++.|...++.+..+||+|+..+|..+++.|++ |+.+|||
T Consensus 238 ~-~~~~~k~~~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLV 312 (572)
T PRK04537 238 F-PADEEKQTLLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK--GQLEILV 312 (572)
T ss_pred e-cCHHHHHHHHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 3 44567888888887653 56799999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||+++++|+|+ ++++||+|+.|.+...|.||+||+||.|+.|.+++|++..+...+..+++.++.
T Consensus 313 aTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 313 ATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred EehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999 999999999999999999999999999999999999999999999999887654
No 13
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2e-46 Score=315.71 Aligned_cols=307 Identities=30% Similarity=0.498 Sum_probs=277.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
|........+|++++|.||++|++|+.++-.+++...+.+++.+.||...+++--.+..+|.|+|+||++|...+.+..+
T Consensus 313 ~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 313 MARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred cchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH
Confidence 34444556789999999999999999999999999999999999999988887667788899999999999999999889
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCC-----CCC------------ceEEEEEeecchhhHHHHHH
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN-----GQG------------FQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~------------~~~i~~sat~~~~~~~~~~~ 150 (323)
.++++.++|+|||++|.+.+|.+.+..++..++.....++ +.. .|.++||||+++....+...
T Consensus 393 vl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred HhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 9999999999999999999999999999999987655421 111 79999999999999999999
Q ss_pred HhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecC
Q 047490 151 ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 230 (323)
++..++...+...-.+.+.+.+.+..++ .+.|...|.+++... -..++|||+|+.+.|+.+++.|.+.++.+..+||
T Consensus 473 ylr~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 473 YLRRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred HhhCCeEEEeccCCCCccchheEEEEec-chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 9999999988888777777777776665 566799999999876 3469999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 231 ~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+-+.++|+..++.|++ |...|||||+++++|||+ ++.+||+||+++|..+|.+|+||.||.|+.|.+++|+++.|-.
T Consensus 550 ~k~qeQRe~aL~~fr~--~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 550 GKSQEQRENALADFRE--GTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred CccHHHHHHHHHHHHh--cCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 9999999999999999 999999999999999999 9999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHH
Q 047490 310 LADRIEEAIR 319 (323)
Q Consensus 310 ~~~~i~~~l~ 319 (323)
....+.+.+.
T Consensus 628 v~ydLkq~l~ 637 (673)
T KOG0333|consen 628 VFYDLKQALR 637 (673)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.9e-46 Score=340.06 Aligned_cols=293 Identities=31% Similarity=0.501 Sum_probs=256.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
..+++++|||+||++|+.|+++.++.+.... ++++..++|+.....+...+..+++|+|+||+++.+.+.+..+.++++
T Consensus 71 ~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l 150 (629)
T PRK11634 71 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL 150 (629)
T ss_pred ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 3456899999999999999999999987654 688999999987777666777789999999999999999888889999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
++||+||||.+++.+|...+..++..++... |.+++|||+++........++..+..+.........+.+.+
T Consensus 151 ~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~--------q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q 222 (629)
T PRK11634 151 SGLVLDEADEMLRMGFIEDVETIMAQIPEGH--------QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 (629)
T ss_pred eEEEeccHHHHhhcccHHHHHHHHHhCCCCC--------eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEE
Confidence 9999999999999999999999988876543 89999999999998888888877766554444334445555
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+..+. ...|...|..++... ...++||||+++..++.+++.|.+.++.+..+||+|++.+|+.++++|++ |+.+
T Consensus 223 ~~~~v~-~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~ 297 (629)
T PRK11634 223 SYWTVW-GMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD--GRLD 297 (629)
T ss_pred EEEEec-hhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC--CCCC
Confidence 555443 456888888888653 45689999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|||||+++++|+|+ ++++||+||.|.+...|.||+||+||.|+.|.+++++...|...++.|++.++
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999 99999999999999999999999999999999999999999989999888755
No 15
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-45 Score=330.12 Aligned_cols=294 Identities=30% Similarity=0.507 Sum_probs=250.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+++|||+||++|+.|+.+.++.+....++++..++|+.+...+.+.+ ...++|+|+||++|..++.++...++++++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 579999999999999999999999888889999999987766555444 4568999999999999988888889999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.+.++...+..++..+... .+.|++++|||++.........++..+..+.............+++.
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 315 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRK------EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY 315 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCC------CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEE
Confidence 999999999988988888888766432 13489999999998888877777766655444333333333444444
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
... ...|...+.+++... ...++||||+++..++.+++.|...++.+..+||+++.++|.++++.|++ |++++||
T Consensus 316 ~~~-~~~k~~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLv 390 (475)
T PRK01297 316 AVA-GSDKYKLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE--GKIRVLV 390 (475)
T ss_pred Eec-chhHHHHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC--CCCcEEE
Confidence 433 455777777777653 45699999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
||+++++|+|+ ++++||++++|.|...|.||+||+||.|+.|.+++++...|...+..+++.++++
T Consensus 391 aT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 391 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred EccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999988765
No 16
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-44 Score=320.29 Aligned_cols=294 Identities=28% Similarity=0.488 Sum_probs=250.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++|||+|+++|+.|+.+.++.+....++.+..+.|+.........+..+++|+|+||+++...+.+....++++++
T Consensus 94 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~l 173 (401)
T PTZ00424 94 LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKL 173 (401)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccE
Confidence 45779999999999999999999999877778888888887766655666677899999999999999887778999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||+|++.+.++...+..++..+.. +.|++++|||+++........+...+..............+.+.+
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPP--------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFY 245 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCC--------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEE
Confidence 999999999988888777777766543 349999999999988887777776665444333333444555666
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
........+...+.+.+... ...++||||+++.+++.+++.|.+.+..+..+||+++..+|..++++|++ |+++||
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~vL 321 (401)
T PTZ00424 246 VAVEKEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRVL 321 (401)
T ss_pred EecChHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEE
Confidence 65555555667777766543 44689999999999999999999999999999999999999999999999 999999
Q ss_pred EEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 255 v~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|||+.+++|+|+ ++++||++++|.+...|.||+||+||.|+.|.|+++++..+...++.+++.+..
T Consensus 322 vaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred EEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCC
Confidence 999999999999 999999999999999999999999999999999999999999999999887754
No 17
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-45 Score=305.41 Aligned_cols=299 Identities=32% Similarity=0.474 Sum_probs=279.8
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
....+|..+|||||++|+.|+..+++++.+..+++++.+|||....++...+..++.|+|+||++|.+++..+...+.++
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.++|+||+++|++.+|.+.++.|...++... |.++||||+...+....+..+..++..........-..+.+
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdr--------QtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ 443 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDR--------QTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQ 443 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcc--------eEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhh
Confidence 9999999999999999999999999887654 99999999999999999999999988777766677777888
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+..+...+.|+++|+..|.++.+ .+++|+|+.-...++.++..|+-.++.+..+||+|.+.+|.+++.+|+. +.+.
T Consensus 444 ~V~V~~s~~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk--k~~~ 520 (731)
T KOG0339|consen 444 TVSVCPSEEKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK--KRKP 520 (731)
T ss_pred eeeeccCcHHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh--cCCc
Confidence 888888889999999999988644 4699999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|+++|+...+|+|+ .+..||+||.-.+...|.||+||.||.|.+|..+++++.+|......+.+.|+.-+
T Consensus 521 VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag 591 (731)
T KOG0339|consen 521 VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG 591 (731)
T ss_pred eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999887543
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=307.40 Aligned_cols=300 Identities=35% Similarity=0.562 Sum_probs=269.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+|+++||+||++|+.|++++.+++....++++..++|+.+...+.+....+++|+|+||++|.+++..+.+.+++++++
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~ 230 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFL 230 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEE
Confidence 36999999999999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred eecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-ceeeeccccccccccceee
Q 047490 96 VLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||||+|++ -+|.+.++.|+........ .+.|.++||||.+..+......++.. +..+..........++.+.
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~----~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~ 306 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPK----NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQK 306 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCc----cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeE
Confidence 9999999999 8899999999988765322 24599999999999998877777665 5566666666677777787
Q ss_pred EEeccCChhHHHHHHHHhccCCCC--C-----CeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSK--G-----NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~--~-----~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.++. ..+|...|++++...... . ++++|||.+.+.|..++.+|...+++...+||+-++.+|.+.+..|+.
T Consensus 307 i~~V~-~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 307 ILFVN-EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eeeec-chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 77776 466888888888754311 2 389999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|.+.+||||.++++|+|+ +++|||+||+|.+..+|.+|+||+||.|+.|.+.+|++..+....+.+.+.+...+
T Consensus 386 --g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 386 --GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN 460 (482)
T ss_pred --CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999887654
No 19
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-45 Score=299.18 Aligned_cols=299 Identities=32% Similarity=0.505 Sum_probs=267.3
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
....+|.+|++.||++|+.|+.-+..++. ..+++..+++|+.+...+.+.+..+.+|+++||++|.++...+...+.++
T Consensus 290 ~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336|consen 290 EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeee
Confidence 35668999999999999999999988885 45889999999999999999999999999999999999999999999999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.|+|+|||++|++.+|.+.++.|+..++.. .|.++.|||+|+.+.++.+.++..+............-....
T Consensus 369 TYlVlDEADrMLDMgFEpqIrkilldiRPD--------RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 369 TYLVLDEADRMLDMGFEPQIRKILLDIRPD--------RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred EEEEecchhhhhcccccHHHHHHhhhcCCc--------ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 999999999999999999999999887654 499999999999999999999999877666665555545445
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
+++.++....|.+.+-..+. ......|+||||.+...|..+..-|.-.|+..-.+||+-.+.+|+..+++|+. |+++
T Consensus 441 Q~i~v~~d~~k~~~~~~f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks--G~vr 517 (629)
T KOG0336|consen 441 QNIIVTTDSEKLEIVQFFVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS--GEVR 517 (629)
T ss_pred eeEEecccHHHHHHHHHHHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc--CceE
Confidence 55566666777754444443 34567899999999999999999888889999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcCC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNES 323 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~ 323 (323)
|||+|+.+.+|+|+ +++||++||+|.+..+|.+|+||.||.|..|..+++++..|....+.+.++|++.++
T Consensus 518 ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ 589 (629)
T KOG0336|consen 518 ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQ 589 (629)
T ss_pred EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhh
Confidence 99999999999999 999999999999999999999999999999999999999999999999999988653
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=303.57 Aligned_cols=292 Identities=31% Similarity=0.513 Sum_probs=264.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~ 92 (323)
+....+|||||||++|+-|+....+++.....+.+.++.||.+...+...+..+++|+|+||++|.+.+.+. ++.++++
T Consensus 249 ~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 249 KVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred cCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccce
Confidence 344589999999999999999999999988899999999999999999999999999999999998888774 6779999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
..+|+||||+|++.+|.+.+..|+..++... |..+||||+...+..+..-.+..++.+.........+...+
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcpk~R--------QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQ 400 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCPKNR--------QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQ 400 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhccccc--------cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhH
Confidence 9999999999999999999999999888654 99999999999999999999999999888877778888888
Q ss_pred eEEeccCC--hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGS--ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.|+.+.+. ..+-..+..++...+ ..++|||+.+.+.|+.+.-.|--.|..++.+||.+++.+|-+.++.|+. ++
T Consensus 401 EFiRIR~~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~--~e 476 (691)
T KOG0338|consen 401 EFIRIRPKREGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK--EE 476 (691)
T ss_pred HHheeccccccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh--cc
Confidence 88877643 234444455555443 4699999999999999999988889999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+++||||+++.+|+|+ .+..||+|.+|.+...|.+|+||..|.|..|.+++|+...|...++.|.+.
T Consensus 477 idvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 477 IDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred CCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999 999999999999999999999999999999999999999999999888766
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=291.42 Aligned_cols=290 Identities=30% Similarity=0.520 Sum_probs=252.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~ 92 (323)
.++..++|++||++|+.|++.+++++...+ ++.+..+-||.+.....+.+..+++|+|+||++|.+.+++. .+...+.
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~ 231 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNL 231 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcc
Confidence 456789999999999999999999999988 89999999999988888888779999999999999999884 4667788
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-ceee--ecccccccccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHL--RTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 169 (323)
+++|+||||++++.+|.+.+..|+..++... |..++|||.++.+.+.....+.. +..+ .......+...
T Consensus 232 k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r--------qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~ 303 (543)
T KOG0342|consen 232 KCLVLDEADRLLDIGFEEDVEQIIKILPKQR--------QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHER 303 (543)
T ss_pred ceeEeecchhhhhcccHHHHHHHHHhccccc--------eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhc
Confidence 9999999999999999999999999998654 99999999999998887766655 2222 22233334445
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+-|+..+ .+.+.-.+..+|+++... .++||||+|...+..+++.|+..++++..+||+.++..|-.+..+|++ .
T Consensus 304 l~Qgyvv~~-~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k--a 379 (543)
T KOG0342|consen 304 LEQGYVVAP-SDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK--A 379 (543)
T ss_pred ccceEEecc-ccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh--c
Confidence 555555544 455678888888886443 899999999999999999999999999999999999999999999999 7
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
+-.||+||++.++|+|+ +++.||.||+|.++.+|++|+||.||.|+.|.++.+..+.|...++.+++
T Consensus 380 esgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 380 ESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred ccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 77899999999999999 99999999999999999999999999999999999999999999888873
No 22
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-42 Score=281.14 Aligned_cols=300 Identities=25% Similarity=0.437 Sum_probs=260.6
Q ss_pred hhhccc-cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-
Q 047490 7 AMLGVL-MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED- 84 (323)
Q Consensus 7 ~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~- 84 (323)
+|+..+ +....|++++|+||++||.|+.+.+.++++..++......-+..... -..+ ..+|+|+||+.+.+++..
T Consensus 149 ~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~kl 225 (477)
T KOG0332|consen 149 TMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKL 225 (477)
T ss_pred HHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHH
Confidence 344443 34668999999999999999999999999888777777666642211 1112 248999999999999888
Q ss_pred CCCCCCCCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc
Q 047490 85 GNMVYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 163 (323)
..+.++.++.+|+|||+.+++ .||.+.-..|+..++..+ |.+++|||.......+..+.......+.....
T Consensus 226 k~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~--------QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e 297 (477)
T KOG0332|consen 226 KCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQ--------QLLLFSATFVEKVAAFALKIVPNANVIILKRE 297 (477)
T ss_pred HhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcc--------eEEeeechhHHHHHHHHHHhcCCCceeeeehh
Confidence 678899999999999999875 568898888888887543 99999999999999999999999988888888
Q ss_pred ccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHh
Q 047490 164 HKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
......+.++++.+...++|.+.|.++. ... .-++.||||.++++|..++..+.+.|..|..+||+|...+|..++++
T Consensus 298 el~L~~IkQlyv~C~~~~~K~~~l~~ly-g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~ 375 (477)
T KOG0332|consen 298 ELALDNIKQLYVLCACRDDKYQALVNLY-GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDR 375 (477)
T ss_pred hccccchhhheeeccchhhHHHHHHHHH-hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHH
Confidence 8999999999999999999999999844 332 34688999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHH
Q 047490 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIE 315 (323)
Q Consensus 244 f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~ 315 (323)
|++ |..+|||+|+++.+|+|+ .++.||+||+|. ++.+|.+|+||+||.|++|.++.++..+ ....+..|+
T Consensus 376 Fr~--g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq 453 (477)
T KOG0332|consen 376 FRE--GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQ 453 (477)
T ss_pred Hhc--CcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHH
Confidence 999 999999999999999999 999999999995 7889999999999999999999999876 556888999
Q ss_pred HHHHhc
Q 047490 316 EAIRKN 321 (323)
Q Consensus 316 ~~l~~~ 321 (323)
++++.+
T Consensus 454 ~~F~~~ 459 (477)
T KOG0332|consen 454 KHFNMK 459 (477)
T ss_pred HHHhhc
Confidence 998654
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-42 Score=277.26 Aligned_cols=304 Identities=31% Similarity=0.477 Sum_probs=258.9
Q ss_pred hhhccccC-CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 7 AMLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~-~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
.++..+++ +.+--++|++||++|+-|+++.|...+...++++..++||.+.-.+...+.++++++|+||+++...+..+
T Consensus 64 Pil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn 143 (442)
T KOG0340|consen 64 PILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSN 143 (442)
T ss_pred HHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccC
Confidence 45556665 44688999999999999999999999999999999999999988888888889999999999998887765
Q ss_pred ----CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeee
Q 047490 86 ----NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLR 159 (323)
Q Consensus 86 ----~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~ 159 (323)
...+++++++|+|||+++++..|.+.+..+...++... |.+++|||+.+............ ..++.
T Consensus 144 ~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~R--------QtLlfSATitd~i~ql~~~~i~k~~a~~~e 215 (442)
T KOG0340|consen 144 LGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPR--------QTLLFSATITDTIKQLFGCPITKSIAFELE 215 (442)
T ss_pred CccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCcc--------ceEEEEeehhhHHHHhhcCCcccccceEEe
Confidence 24578899999999999999999999999998887653 99999999988777654333332 12222
Q ss_pred ccccccccccceeeEEeccCChhHHHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 047490 160 TSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 238 (323)
............+.|+.++ .+.|-.-+...|..+.+ ..+.++||+++..+|+.++..|+..+..+..+|+.|++.+|-
T Consensus 216 ~~~~vstvetL~q~yI~~~-~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~ 294 (442)
T KOG0340|consen 216 VIDGVSTVETLYQGYILVS-IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERL 294 (442)
T ss_pred ccCCCCchhhhhhheeecc-hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHH
Confidence 2222233344455555554 45576777777777654 457899999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
.-+.+|+. +..+|||||+++++|+|+ .++.||+|+.|.++.+|++|+||..|.|..|.++++++..|...+..|++.
T Consensus 295 ~aLsrFrs--~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~ 372 (442)
T KOG0340|consen 295 AALSRFRS--NAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEE 372 (442)
T ss_pred HHHHHHhh--cCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHH
Confidence 99999999 999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 047490 318 IRKN 321 (323)
Q Consensus 318 l~~~ 321 (323)
.+++
T Consensus 373 igkK 376 (442)
T KOG0340|consen 373 IGKK 376 (442)
T ss_pred Hhcc
Confidence 8875
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-41 Score=282.28 Aligned_cols=292 Identities=28% Similarity=0.475 Sum_probs=248.0
Q ss_pred hhhccccCCCC--ccEEEEcCCHHHHHHHHHHHHHhccc-cceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRR--PRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~--~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~ 82 (323)
-++..-.+.++ ..+||++|||+|+.|+.+.+..+... ..+++.++.||.........+ ..+++|+|+||+++.+++
T Consensus 67 ~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~ 146 (567)
T KOG0345|consen 67 IIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDIL 146 (567)
T ss_pred HHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHH
Confidence 33334444333 47999999999999999999999887 578999999997766655544 457899999999999999
Q ss_pred HcCC--CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 83 EDGN--MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 83 ~~~~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
.+.. +.+.++.++|+||||++++.||...++.|+..++... +.=++|||...+..+...-.+.+++.+..
T Consensus 147 ~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR--------RTGLFSATq~~~v~dL~raGLRNpv~V~V 218 (567)
T KOG0345|consen 147 QREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR--------RTGLFSATQTQEVEDLARAGLRNPVRVSV 218 (567)
T ss_pred hchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------ccccccchhhHHHHHHHHhhccCceeeee
Confidence 9854 4455999999999999999999999999999998765 88899999999999988888998887655
Q ss_pred ccccc--ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHH
Q 047490 161 STLHK--KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQE 236 (323)
Q Consensus 161 ~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~ 236 (323)
..... .+.....+|..+. .+.|...++++|... ..+++|||.++...++-.+..|... ...+..+||.|....
T Consensus 219 ~~k~~~~tPS~L~~~Y~v~~-a~eK~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 219 KEKSKSATPSSLALEYLVCE-ADEKLSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred cccccccCchhhcceeeEec-HHHHHHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 54443 4444555555554 577999999999874 5689999999999999999988765 678889999999999
Q ss_pred HHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHH
Q 047490 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311 (323)
Q Consensus 237 r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 311 (323)
|..+++.|+. ..-.+|+||+++.+|+|+ +++.||+||+|.++.-|.+|+||++|.|..|.+++|..+.+....
T Consensus 296 R~k~~~~F~~--~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 296 RAKVLEAFRK--LSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred HHHHHHHHHh--ccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 9999999998 666699999999999999 999999999999999999999999999999999999999766543
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-41 Score=287.40 Aligned_cols=292 Identities=28% Similarity=0.488 Sum_probs=254.3
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC-CCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN-MVYG 90 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~-~~~~ 90 (323)
+....|--+||+.|||+||.|+.+.+.+.+..++.+.+.+-||.+.......+. +.+|+||||++|+..+.... +.-+
T Consensus 136 Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~ 214 (758)
T KOG0343|consen 136 WSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTS 214 (758)
T ss_pred CCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCC
Confidence 345668899999999999999999999999999999999999988665544444 48999999999999988764 5577
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccc-c-ccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH-K-KIA 168 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 168 (323)
++.++|+|||+++++.||...+..|+..++... |.+++|||....+.+.....+.++..+...... . .+.
T Consensus 215 ~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R--------QTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR--------QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred cceEEEeccHHHHHHHhHHHHHHHHHHhCChhh--------eeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChh
Confidence 899999999999999999999999999998765 999999999999999998888888776655222 2 333
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
...++|+ +....+|+..|...+..++ ..++|||+.+.+++..+++.|... |.++..+||.|++..|-++..+|.+
T Consensus 287 ~L~Q~y~-~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 287 NLQQSYV-IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred hhhheEE-EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH
Confidence 4445554 4457889999999999874 469999999999999999998865 7888999999999999999999998
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc-HHHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIEEA 317 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~i~~~ 317 (323)
.+-.||+||+++.+|+|+ .++.||.+|+|.+..+|++|+||..|.+..|.++++.++.+ ...+..+++.
T Consensus 364 --~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 364 --KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred --hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 777899999999999999 99999999999999999999999999999999999999988 6677777654
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.9e-42 Score=279.26 Aligned_cols=299 Identities=28% Similarity=0.483 Sum_probs=260.9
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc------ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA------RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQH 81 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~ 81 (323)
+.--.++..+|..||+||+++|+.|+.+.+.+|.... .++...+-||.....+......+.+|+|+||++|.++
T Consensus 237 ~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~Dm 316 (610)
T KOG0341|consen 237 MMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDM 316 (610)
T ss_pred hcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHH
Confidence 3334567789999999999999999999999886554 3788889999998888888899999999999999999
Q ss_pred HHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 82 IEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
+......++-++|+.+|||++|++.+|.+.++.++..++... |.+++|||+|...+.+....+-.++.+...
T Consensus 317 L~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR--------QTLLFSATMP~KIQ~FAkSALVKPvtvNVG 388 (610)
T KOG0341|consen 317 LAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR--------QTLLFSATMPKKIQNFAKSALVKPVTVNVG 388 (610)
T ss_pred HHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh--------heeeeeccccHHHHHHHHhhcccceEEecc
Confidence 999888899999999999999999999999999999998765 999999999999998888888777766555
Q ss_pred ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHH
Q 047490 162 TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 241 (323)
..-..-.++.+..-++ ..+.|+.-|++.|.. ...|++|||.....+..+.+.|--.|..+..+||+-++++|...+
T Consensus 389 RAGAAsldViQevEyV-kqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 389 RAGAASLDVIQEVEYV-KQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred cccccchhHHHHHHHH-HhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHH
Confidence 4444444444433332 356788888888875 467999999999999999999988899999999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHH
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIR 319 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~ 319 (323)
+.|+. |+.+|||+|++++.|+|+ ++.|||+||+|.....|.+|+||.||.|+.|.+.+|+++. +...+-.++..|.
T Consensus 465 ~afr~--gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~ 542 (610)
T KOG0341|consen 465 EAFRA--GKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQ 542 (610)
T ss_pred HHHhc--CCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHH
Confidence 99999 999999999999999999 9999999999999999999999999999999999999974 6677777776664
Q ss_pred h
Q 047490 320 K 320 (323)
Q Consensus 320 ~ 320 (323)
.
T Consensus 543 E 543 (610)
T KOG0341|consen 543 E 543 (610)
T ss_pred H
Confidence 3
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.7e-40 Score=307.41 Aligned_cols=295 Identities=18% Similarity=0.246 Sum_probs=220.7
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc----CCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED----GNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~----~~~~ 88 (323)
.+++++++|||+||++|+.|+.+.++++. ..++++..+.|+... .+...+..+++|+|+||+.+...+.. +...
T Consensus 77 ~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 77 ADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred hhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHH
Confidence 34567899999999999999999999997 346788777777653 33345556689999999998643322 2234
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
++++++||+||+|.+.+ .|+..+..++..+...+... +.++|++++|||+++... ........+..... . .....
T Consensus 155 l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~-g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~-~~~~~ 229 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARY-GASPVFVLASATTADPAA-AASRLIGAPVVAVT-E-DGSPR 229 (742)
T ss_pred HhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhc-CCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-C-CCCCc
Confidence 78999999999999976 48888888877776543322 235699999999988754 44444444432211 1 11111
Q ss_pred cceeeEEeccC----------------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--------CCe
Q 047490 169 SARHDFIKLSG----------------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--------QIS 224 (323)
Q Consensus 169 ~~~~~~~~~~~----------------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--------~~~ 224 (323)
.........+. ...+...+.+++. .+.++||||++++.++.++..+++. +..
T Consensus 230 ~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~ 305 (742)
T TIGR03817 230 GARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAER 305 (742)
T ss_pred CceEEEEecCCccccccccccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 11222211111 1123444444443 4679999999999999999988753 567
Q ss_pred eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEe
Q 047490 225 TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303 (323)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~ 303 (323)
+..+||++++++|++++++|++ |++++||||+++++|||+ ++++||+++.|.+...|.||+||+||.|+.|.++++.
T Consensus 306 v~~~hgg~~~~eR~~ie~~f~~--G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 306 VAAYRAGYLPEDRRELERALRD--GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred hhheecCCCHHHHHHHHHHHHc--CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 8899999999999999999999 999999999999999999 9999999999999999999999999999999999988
Q ss_pred e--CCcHHHHHHHHHHHHh
Q 047490 304 A--KKDVLLADRIEEAIRK 320 (323)
Q Consensus 304 ~--~~~~~~~~~i~~~l~~ 320 (323)
. +.|...+..+++.++.
T Consensus 384 ~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred CCChHHHHHHhCHHHHhcC
Confidence 6 4566677777766654
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-40 Score=271.54 Aligned_cols=296 Identities=29% Similarity=0.443 Sum_probs=253.6
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccc--eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC-CCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN-MVY 89 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~-~~~ 89 (323)
....++.++||+||++|+.|+++.+.++....+ +++.-++++.+......++.+.++|+|+||.++..++..+. ...
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~ 168 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYL 168 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhh
Confidence 345689999999999999999999999876543 56666666655555556777889999999999999998876 567
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccc-c
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKI-A 168 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (323)
..+.++|+||||.+++.|+.+.+..+.+.++..+ |-++||||+.+.+...-..++.++..+.....+... .
T Consensus 169 ~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~--------Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~d 240 (569)
T KOG0346|consen 169 DSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIY--------QCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPD 240 (569)
T ss_pred hheeeEEechhhhhhhcccHHHHHHHHHhCCchh--------hheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcc
Confidence 8899999999999999999999999999998766 999999999999999999999999887665544443 3
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
...++++.+. ..+|...+..+++-.+ -.++.|||+|+.+.+..+.-+|+..|++.+++.|.||...|..++++|++
T Consensus 241 qL~Qy~v~cs-e~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-- 316 (569)
T KOG0346|consen 241 QLTQYQVKCS-EEDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-- 316 (569)
T ss_pred cceEEEEEec-cchhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC--
Confidence 4556666665 6778777776665433 23699999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEec-----------------------------------ccccccCC-CCCEEEEcCCCCCchhhhhhhccccc
Q 047490 249 GDCPTLVCTD-----------------------------------LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292 (323)
Q Consensus 249 g~~~ilv~t~-----------------------------------~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R 292 (323)
|-.+++|||+ -..+|||+ ++.+|++||+|.+...|++|+||.+|
T Consensus 317 G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 317 GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 9999999998 13579999 99999999999999999999999999
Q ss_pred CCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 293 MGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 293 ~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+++|.+++|+.+.+......+++.+..
T Consensus 397 g~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 397 GNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred CCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 9999999999999998877777776654
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-41 Score=283.46 Aligned_cols=303 Identities=31% Similarity=0.491 Sum_probs=238.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC---CCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM---VYGD 91 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~---~~~~ 91 (323)
...+.+||++|||+||-|+.+.+....+..++++..++||.....+.+.++..++|+|+||++||.++..... .+++
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3344599999999999999999999999999999999999999889999999999999999999999987654 4778
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCc-------eeeeccccc
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI-------AHLRTSTLH 164 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~-------~~~~~~~~~ 164 (323)
++++|+||+|+|++.|.-..+..++..+.....+. ..|.+.+|||++-....-+....... ..+..-...
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~---qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNR---QRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhhhhhccc---ccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 89999999999999998899999998887433332 45999999998632221111000000 000000000
Q ss_pred cccccceeeEEeccCChhHHHHHHHHhccCC-------------CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC
Q 047490 165 KKIASARHDFIKLSGSENKLEALLQVLEPSL-------------SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE 231 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-------------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 231 (323)
....+ ..-+++.+....-...|.+-+-++. .-++++|||||+.+.+.+++-.|+..++....+|+.
T Consensus 418 ig~~~-kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 418 IGFRG-KPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred hCccC-CCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 00000 0023333333333333333221110 235799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 232 VPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 232 ~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
|.+.+|-..+++|++ ..-.|||||+++.+|+|+ .++|||||-.|.+...|.+|.||..|.++.|..+.++.+++...
T Consensus 497 M~QKqRLknLEkF~~--~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQ--SPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHhHHHHhc--CCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 999999999999999 666699999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 047490 311 ADRIEEAIRKNES 323 (323)
Q Consensus 311 ~~~i~~~l~~~~~ 323 (323)
+.++.+-|++.++
T Consensus 575 ~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 575 LKKLCKTLKKKED 587 (731)
T ss_pred HHHHHHHHhhccC
Confidence 9999999988764
No 30
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-40 Score=276.32 Aligned_cols=308 Identities=28% Similarity=0.495 Sum_probs=244.9
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccc-eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED- 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~- 84 (323)
+|-..+.+..|+.+||++|||+|+.|+++.++++..... +-.+.+-||+........+..|++|+|+||+++.+.+.+
T Consensus 201 ~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT 280 (708)
T KOG0348|consen 201 AMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT 280 (708)
T ss_pred hcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc
Confidence 444556677899999999999999999999999987654 455677788888888888889999999999999998887
Q ss_pred CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhc----cccCCCCC-CCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 85 GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK----NRASKPNG-QGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~----~~~~~~~~-~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
..+.+++++++|+||+|++.+.||...+..|+..+. ..+....- ...|.+++|||+.+.+.+..+..+.++..+.
T Consensus 281 ~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ 360 (708)
T KOG0348|consen 281 KSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS 360 (708)
T ss_pred chheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee
Confidence 567789999999999999999999999999998883 23322111 1368899999999998888877777766654
Q ss_pred cccc-------------------------ccccccceeeEEeccCChhHHHHHHHHhccCC--CCCCeEEEEecCcccHH
Q 047490 160 TSTL-------------------------HKKIASARHDFIKLSGSENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSR 212 (323)
Q Consensus 160 ~~~~-------------------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~ 212 (323)
.+.. ...+....+.|..+++. -++..|..+|.... +...++|||..+.+.++
T Consensus 361 ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 361 LDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred ccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 1110 01112233445544443 34555555554422 24469999999999998
Q ss_pred HHHHHHhh----------------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC
Q 047490 213 AVDHFLNE----------------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 213 ~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~ 269 (323)
.=+..|.+ .+.++..+||+|++++|..++..|.. .+..||+||+++++|+|+ +++
T Consensus 440 FHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~--~~~~VLLcTDVAaRGLDlP~V~ 517 (708)
T KOG0348|consen 440 FHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH--SRRAVLLCTDVAARGLDLPHVG 517 (708)
T ss_pred HHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc--ccceEEEehhhhhccCCCCCcC
Confidence 77777654 13466779999999999999999998 777799999999999999 999
Q ss_pred EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 270 HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 270 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
.||.|++|.+..+|.+|+||..|.|.+|.++.|..+.|..++..++..
T Consensus 518 ~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 518 LVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred eEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887777653
No 31
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2e-39 Score=279.60 Aligned_cols=287 Identities=25% Similarity=0.420 Sum_probs=254.4
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
-........++.+||+|||+++-|+.+.++..++.+ |.++..+.||+........++. ++|+|+||+++.+++....+
T Consensus 85 ~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~ 163 (980)
T KOG4284|consen 85 ESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAM 163 (980)
T ss_pred hhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCC
Confidence 344456667899999999999999999999998754 7899999999876655555554 78999999999999999999
Q ss_pred CCCCCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc
Q 047490 88 VYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK 166 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+++++++|+||||.+.+ ..|...+..|+..+++.. |++++|||++..+...+..++..+..+..-.....
T Consensus 164 n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r--------Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~ 235 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR--------QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQ 235 (980)
T ss_pred CccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh--------eeeEEeccCchhHHHHHHHHhcccceeecccCCce
Confidence 999999999999999998 558899999999988755 99999999999999999999999988887777777
Q ss_pred cccceeeEEeccCCh-------hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHH
Q 047490 167 IASARHDFIKLSGSE-------NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 239 (323)
..+++++++...... .|.+.|-+++.+. +-.+.||||+....|+-++..|+..|+++..+.|.|++.+|..
T Consensus 236 L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 236 LFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred eechhheeeeccCCcchHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 888888887776543 2666666776665 4468899999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 240 ~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+.+.++. -.++|||+|+...+|||- +++.||+.|+|.+..+|.+|+||+||+|.+|.+++++..+..
T Consensus 314 a~~~lr~--f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 314 AVDQLRA--FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHhhh--ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999 899999999999999999 999999999999999999999999999999999999997654
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-39 Score=293.15 Aligned_cols=299 Identities=29% Similarity=0.451 Sum_probs=269.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
....||.+||++||++|+.|+.++++.+....++++.+++|+.....+...+..++.|+|+||+++..++-.+.-.+.++
T Consensus 434 ~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnl 513 (997)
T KOG0334|consen 434 EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNL 513 (997)
T ss_pred hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccc
Confidence 44569999999999999999999999999999999999999999999988898889999999999999887766555555
Q ss_pred c---EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 K---YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~---~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
+ ++|+||+|+|++.+|.+....|+..++.. .|.+++|||++..+...-...+..+..+...........
T Consensus 514 rR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpd--------rQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 514 RRVTYLVLDEADRMFDMGFEPQITRILQNLRPD--------RQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred cccceeeechhhhhheeccCcccchHHhhcchh--------hhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 5 99999999999999999988898888544 499999999999988887777777777666655566667
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+.+..+...+.|+..|+++|.+..+ ..++||||.+...|..+.+.|.+.++.+..+||+.+..+|..++++|++ +
T Consensus 586 V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~--~ 662 (997)
T KOG0334|consen 586 VTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN--G 662 (997)
T ss_pred ceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc--c
Confidence 777777777788999999999988766 6799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
.+.+||+|+.+.+|+|+ .+..||+|+.|.-+.+|.+|+||+||.|.+|.+++|+++.+......|.+.+...+
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred CceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 99999999999999999 99999999999999999999999999999999999999988889999988886543
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-39 Score=261.19 Aligned_cols=292 Identities=30% Similarity=0.527 Sum_probs=264.9
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..+.+..++|+++|+++|+.|..+....++...+.++..+.|+.....+...+ ...++|+++||++....+....+...
T Consensus 89 D~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~ 168 (397)
T KOG0327|consen 89 DMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTD 168 (397)
T ss_pred CcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccc
Confidence 34556788999999999999999999999998899999999988877555444 44579999999999999998888888
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.+++.|+||++.+.+.+|.+.+..++..++.. +|.+++|||.+.++....++++..+..+...........+
T Consensus 169 ~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~--------vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gi 240 (397)
T KOG0327|consen 169 GIKMFVLDEADEMLSRGFKDQIYDIFQELPSD--------VQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGI 240 (397)
T ss_pred ceeEEeecchHhhhccchHHHHHHHHHHcCcc--------hhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhhe
Confidence 89999999999999999999999999998864 4999999999999999999999998887777777778888
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
+++|.....+. |+..|.++.. .-.+.++|||++..+..+...|...+..+..+||+|.+.+|..++.+|+. |.
T Consensus 241 kq~~i~v~k~~-k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~--gs 313 (397)
T KOG0327|consen 241 KQFYINVEKEE-KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS--GS 313 (397)
T ss_pred eeeeeeccccc-cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc--CC
Confidence 88888877655 8888888776 34678999999999999999999999999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l 318 (323)
.++||+|..+++|+|+ .++.|++|+.|.....|.+|+||+||.|.+|.++.+++..|...++.+++.+
T Consensus 314 srvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 314 SRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred ceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 9999999999999999 9999999999999999999999999999999999999999999999998765
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-38 Score=283.25 Aligned_cols=281 Identities=20% Similarity=0.261 Sum_probs=209.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHH-cCCC-CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIE-DGNM-VYG 90 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~-~~~~-~~~ 90 (323)
+..+||++|+++|+.|+.+.++.. ++.+..+.++........ ...+.++|+++||+++..... ...+ ...
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~ 126 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERK 126 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcC
Confidence 457999999999999999988865 556777776654432221 123457999999999753220 0111 467
Q ss_pred CCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeeeccccccc
Q 047490 91 DIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLRTSTLHKK 166 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 166 (323)
+++++|+||||++.+|+ |.+.+..+... .... .+.+++++|||+++.....+...+.. +....... .
T Consensus 127 ~i~~iViDEaH~i~~~g~~fr~~~~~l~~l-~~~~-----~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~ 197 (470)
T TIGR00614 127 GITLIAVDEAHCISQWGHDFRPDYKALGSL-KQKF-----PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---D 197 (470)
T ss_pred CcCEEEEeCCcccCccccccHHHHHHHHHH-HHHc-----CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---C
Confidence 89999999999999877 56666554321 1111 13489999999998877666554322 22211111 1
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+++. +............+.+.+... ..+.++||||++++.++.+++.|+..++.+..+||+|++.+|..++++|++
T Consensus 198 r~nl~--~~v~~~~~~~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 198 RPNLY--YEVRRKTPKILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred CCCcE--EEEEeCCccHHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 11221 111122224556677666532 245677999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+++|||||+++++|+|+ ++++||++++|.|...|.||+||+||.|..|.|+++++..|...++.+.
T Consensus 275 --g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 275 --DEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred --CCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999998887666654
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.9e-38 Score=290.74 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=210.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc------CCCCCEEEeChHHHHH---HHHc--C
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL------NNPIDMVVGTPGRILQ---HIED--G 85 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~Tp~~l~~---~~~~--~ 85 (323)
+..+|||+|+++|+.++...+.+. ++....+.++.....+...+ .+.++|+|+||+++.. ++.. .
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~ 575 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN 575 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh
Confidence 458999999999998666666553 67888888887655443322 1468999999999852 1211 1
Q ss_pred CCCCCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 163 (323)
......+.+|||||||++.+|| |++.+..+-.. .... .+++++++|||++......+...+..........
T Consensus 576 L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L-r~~f-----p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~- 648 (1195)
T PLN03137 576 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL-KQKF-----PNIPVLALTATATASVKEDVVQALGLVNCVVFRQ- 648 (1195)
T ss_pred hhhccccceeccCcchhhhhcccchHHHHHHHHHH-HHhC-----CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-
Confidence 1123458899999999999988 77777764221 1111 1348999999999888876666554322111110
Q ss_pred ccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHh
Q 047490 164 HKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
....+++ .|............+.+.+.... .+.+.||||.+++.++.+++.|...++.+..|||+|++.+|..++++
T Consensus 649 Sf~RpNL--~y~Vv~k~kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~ 725 (1195)
T PLN03137 649 SFNRPNL--WYSVVPKTKKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQ 725 (1195)
T ss_pred ccCccce--EEEEeccchhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHH
Confidence 1111222 22222222223456666665431 34678999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 244 f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|.. |+++|||||.++++|||+ ++++||+|++|.|...|.|++||+||.|..|.|++++...|...++.+.
T Consensus 726 F~~--Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 726 WSK--DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred Hhc--CCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999 999999999999999999 9999999999999999999999999999999999999988776665554
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-38 Score=263.97 Aligned_cols=299 Identities=29% Similarity=0.484 Sum_probs=231.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCC-C----CCEEEeChHHHHHHHHc-CCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN-P----IDMVVGTPGRILQHIED-GNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~Iii~Tp~~l~~~~~~-~~~~~ 89 (323)
+.-+++|++||++|+.|+++.|..|....|+.+..+.|..........+.+ . .+|+|+||++|.+.+.. ..+.+
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcch
Confidence 458999999999999999999999999999999999998887766655533 2 38999999999998884 67889
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhcccc-----C-------------------CCC--CCCceEEEEEeecchh
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA-----S-------------------KPN--GQGFQTVLVSATMTKA 143 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~-----~-------------------~~~--~~~~~~i~~sat~~~~ 143 (323)
++++|+|+||||++.+..|..+...++..+...- . ..+ ..+...+++|||+...
T Consensus 294 k~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqd 373 (620)
T KOG0350|consen 294 KHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQD 373 (620)
T ss_pred hhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcC
Confidence 9999999999999998777776666655443320 0 000 1234477888888766
Q ss_pred hHHHHHHHhcCceeeecc----ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHh
Q 047490 144 VQKLVDEECQGIAHLRTS----TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN 219 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 219 (323)
..+..+..+..+.-.... ..........+...... ..-|...+...+... +..++|+|+++...+.+++..|+
T Consensus 374 P~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~-~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 374 PSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE-PKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred hHHHhhhhcCCCceEEeecccceeeecChhhhhceeecc-cccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHH
Confidence 666555555555222111 22223333334333332 233555666666553 67899999999999999999887
Q ss_pred ----hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 220 ----ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 220 ----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
..+..+..+.|.++...|.+.++.|.. |++++|||++++.+|+|+ ++++||+||+|.+...|.+|+||.+|.|
T Consensus 451 v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~--g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg 528 (620)
T KOG0350|consen 451 VEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK--GDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG 528 (620)
T ss_pred HHhccccchhhhhhhhhhHHHHHHHHHHHhc--CCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc
Confidence 236677779999999999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred CcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 295 AKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 295 ~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
+.|.++.+....+...+..+-+...
T Consensus 529 q~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 529 QDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred CCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999988876666655443
No 37
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-38 Score=260.05 Aligned_cols=305 Identities=28% Similarity=0.425 Sum_probs=269.3
Q ss_pred cchhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHH
Q 047490 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQH 81 (323)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~ 81 (323)
+.+.+++..+. ..+.++++++||++|+.|+.+..+.++...++++.+++|+....++...++.++|||++||+++.++
T Consensus 77 ipm~e~Lk~~s--~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~ 154 (529)
T KOG0337|consen 77 IPMIEKLKSHS--QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHL 154 (529)
T ss_pred HHHHHHHhhcc--ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeee
Confidence 34455555554 5589999999999999999999999999999999999999999999999998899999999999988
Q ss_pred HHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 82 IEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
.-.-.+.++.+.||||||++++...||.+....++..++... |.++||||+|..+..+....+..+..++.+
T Consensus 155 ~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~--------QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 155 GVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESR--------QTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred ehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcc--------eEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 777678899999999999999999999999999999998654 999999999999999888888888887765
Q ss_pred ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHH
Q 047490 162 TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 241 (323)
.....-+.....|..+ ...+|...|+.++..... ..++++||.+..+++-+.+.|+..++.+..++|.|++..|....
T Consensus 227 vetkise~lk~~f~~~-~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~ 304 (529)
T KOG0337|consen 227 VETKISELLKVRFFRV-RKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKING 304 (529)
T ss_pred hhhhcchhhhhheeee-ccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcc
Confidence 5444443444444443 467899999999887543 46899999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+|+. ++..++|.|+.+.+|+|+ -.+.||+|+.|.+...|.+|+||+.|.|..|..|.++...|...+-.+...+++
T Consensus 305 ~~F~~--~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 305 RDFRG--RKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccccC--CccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999 999999999999999999 899999999999999999999999999999999999999999888888776654
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.6e-37 Score=282.56 Aligned_cols=279 Identities=18% Similarity=0.249 Sum_probs=208.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+..+||++|+++|+.|+.+.++.. ++....+.++........ ...+..+++++||+++........+...++
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l 140 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNP 140 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCC
Confidence 357999999999999999999875 456666666544333222 123457899999999863221122334578
Q ss_pred cEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc--Cceeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 168 (323)
+++|+||||++.+|+ |.+.+..+.. +.... .+.+++++|||+++.....+...+. .+....... ..+
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~-l~~~~-----p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~ 211 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQ-LRQRF-----PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRP 211 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHH-HHHhC-----CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCC
Confidence 999999999999877 6666655422 22211 1348999999999877665544432 222211111 111
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++. +. +.....+...+...+... .+.++||||+++++++.+++.|+..++.+..+||+|++.+|..++++|++
T Consensus 212 nl~--~~-v~~~~~~~~~l~~~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-- 284 (607)
T PRK11057 212 NIR--YT-LVEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-- 284 (607)
T ss_pred cce--ee-eeeccchHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC--
Confidence 221 11 122233556666666543 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+.+|||||+++++|+|+ ++++||+|++|.|...|.|++||+||.|.+|.|+++++..|...++++.
T Consensus 285 g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999998876665543
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.3e-37 Score=282.26 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=214.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+..++|++|+++|+.|+.+.++.+ ++.+..+.++........ ...+..+|+++||+++........+...++
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l 128 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPI 128 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCC
Confidence 457899999999999999999885 567777777765443322 234568999999999864332223445689
Q ss_pred cEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCc--eeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI--AHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 168 (323)
+++|+||||++.+|+ |.+.+..+....... .+.+++++|||+++.....+...+... ..+... ...+
T Consensus 129 ~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~------~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ 199 (591)
T TIGR01389 129 ALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF------PQVPRIALTATADAETRQDIRELLRLADANEFITS---FDRP 199 (591)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHhC------CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCC
Confidence 999999999999876 677776665433221 123699999999988877666655322 111111 1111
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++ ++.+.....+...+.+.+... .+.++||||++++.++.+++.|...++.+..+||+|+.++|..+++.|.+
T Consensus 200 nl---~~~v~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-- 272 (591)
T TIGR01389 200 NL---RFSVVKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-- 272 (591)
T ss_pred Cc---EEEEEeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc--
Confidence 22 222222345667777777654 36789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+.+|||||+++++|+|+ ++++||++++|.|...|.|++||+||.|..|.|+++++..|...++.+.
T Consensus 273 g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 273 DDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999988765555443
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.8e-36 Score=292.22 Aligned_cols=276 Identities=20% Similarity=0.255 Sum_probs=200.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhc------------cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHH
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSIS------------HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~ 83 (323)
++.++|||+|+++|++|+.+.++... ...++++...+|+.....+.+.+.++++|+|+||++|..++.
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLt 115 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLT 115 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHh
Confidence 46899999999999999999987521 123688999999988877777777788999999999998876
Q ss_pred cC-CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeeec
Q 047490 84 DG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLRT 160 (323)
Q Consensus 84 ~~-~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~~ 160 (323)
+. ...++++++||+||+|.+.+..++.++...+..+..... .+.|+|++|||+.+. .+ +.+++.. +..+..
T Consensus 116 sk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~----~~~QrIgLSATI~n~-ee-vA~~L~g~~pv~Iv~ 189 (1490)
T PRK09751 116 SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH----TSAQRIGLSATVRSA-SD-VAAFLGGDRPVTVVN 189 (1490)
T ss_pred hhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC----CCCeEEEEEeeCCCH-HH-HHHHhcCCCCEEEEC
Confidence 53 346899999999999999987778887777777765432 356999999999873 22 3334332 222221
Q ss_pred cccccccccceeeEEeccCC------------------h-hHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 161 STLHKKIASARHDFIKLSGS------------------E-NKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~------------------~-~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
... .....+. .+....+. . .....+ ..++.. ...++++|||||++..|+.++..|++
T Consensus 190 ~~~-~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~-i~~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 190 PPA-MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE-VLRHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred CCC-CcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH-HhcCCCEEEECCCHHHHHHHHHHHHH
Confidence 111 1111111 11111100 0 000111 112221 12457999999999999999998875
Q ss_pred CC---------------------------------CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-
Q 047490 221 NQ---------------------------------ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL- 266 (323)
Q Consensus 221 ~~---------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~- 266 (323)
.. ..+..|||+|++++|..+++.|++ |++++||||++++.|||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~--G~LrvLVATssLELGIDIg 344 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS--GELRCVVATSSLELGIDMG 344 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh--CCceEEEeCcHHHccCCcc
Confidence 31 125679999999999999999999 999999999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhhhcccccCC-CcceEEEE
Q 047490 267 DVDHVIMFDFPLNSIDYLHRTGRTARMG-AKGKVTSL 302 (323)
Q Consensus 267 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~-~~g~~~~~ 302 (323)
++++||+++.|.+...|.||+||+||.. ..+.++++
T Consensus 345 ~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 345 AVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred cCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 8999999999999999999999999973 33445533
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.1e-37 Score=289.95 Aligned_cols=282 Identities=19% Similarity=0.273 Sum_probs=202.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHh-------c----ccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSI-------S----HHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~-------~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~ 82 (323)
.++.++||++|+++|++|+.+.+.+. . ... ++++...+|+.......+.+.++++|+|+||+++..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 34678999999999999998866532 2 222 66888899998776666667777899999999998777
Q ss_pred HcCCC--CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch--hhHHHHHHHhc----C
Q 047490 83 EDGNM--VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK--AVQKLVDEECQ----G 154 (323)
Q Consensus 83 ~~~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~--~~~~~~~~~~~----~ 154 (323)
..... .++++++||+||+|.+.+..++..+...+..+.... +.+.|++++|||+++ ....++..... .
T Consensus 162 ~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r 237 (876)
T PRK13767 162 NSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA----GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPR 237 (876)
T ss_pred cChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc----CCCCeEEEEecccCCHHHHHHHhcCccccCCCC
Confidence 55432 478999999999999998778888777777666543 124599999999975 23333322110 0
Q ss_pred ceeeeccccccccccceeeEEec------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC------C
Q 047490 155 IAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN------Q 222 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------~ 222 (323)
...+..... ........... .........+.+.+......++++||||+++..|+.++..|++. +
T Consensus 238 ~~~iv~~~~---~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~ 314 (876)
T PRK13767 238 DCEIVDARF---VKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDE 314 (876)
T ss_pred ceEEEccCC---CccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccc
Confidence 111110000 00000000000 01111223334444433345679999999999999999999863 4
Q ss_pred CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC-CcceEE
Q 047490 223 ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG-AKGKVT 300 (323)
Q Consensus 223 ~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~-~~g~~~ 300 (323)
..+..+||++++++|..+++.|++ |++++||||++++.|+|+ ++++||+++.|.+...|.||+||+||.+ ..+.+.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~--G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ 392 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKR--GELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGR 392 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHc--CCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEE
Confidence 678999999999999999999999 999999999999999999 9999999999999999999999999874 444444
Q ss_pred EEeeC
Q 047490 301 SLVAK 305 (323)
Q Consensus 301 ~~~~~ 305 (323)
++...
T Consensus 393 ii~~~ 397 (876)
T PRK13767 393 IIVVD 397 (876)
T ss_pred EEEcC
Confidence 44443
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-36 Score=256.75 Aligned_cols=297 Identities=26% Similarity=0.421 Sum_probs=254.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhc--cccceeEEEeecCccCCccc-cccCCCCCEEEeChHHHHHHHHcCC--CCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSIS--HHARFRSTMVSGGGRLRPQE-DSLNNPIDMVVGTPGRILQHIEDGN--MVY 89 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~Tp~~l~~~~~~~~--~~~ 89 (323)
.-+-+++|+.|+++|+.|++++++++. ...+.++..+.......... ......++|+++||.++...+.... ..+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 456899999999999999999999998 55556665555543322211 1123347999999999998888765 678
Q ss_pred CCCcEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 90 GDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+.+.++|+||+|.+.+. .|...+..|...+.. .++++-++|||.+...+++..........+..+..+....
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~ 359 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANE 359 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcC-------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhh
Confidence 99999999999999987 677777777777654 3568899999999999999998888877776666666666
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHH-hhCCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFL-NENQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
.+.+....+.....|+-++.+++.... ..|++||+++.+.|..+...| .-.++.+..+||+.+..+|+++++.|+.
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~- 436 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI- 436 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-
Confidence 777888888888899999999998763 459999999999999999999 5668999999999999999999999999
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|++-+||||+.+++|+|+ +++.||+||.|.+...|++|+||+||.|+.|.+++|+++.|...++-+.+..+.++
T Consensus 437 -g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG 511 (593)
T KOG0344|consen 437 -GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSG 511 (593)
T ss_pred -cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999887653
No 43
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-35 Score=259.92 Aligned_cols=282 Identities=20% Similarity=0.261 Sum_probs=220.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+||++|..+|..++.+.+++. |+.+..+.+..+.++....+ .+..++++-+||++..-.....+....+.
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~ 133 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPIS 133 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCc
Confidence 38999999999999999999887 56777777775554443322 34579999999999544332233356788
Q ss_pred EEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce--eeecccccccccc
Q 047490 94 YLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA--HLRTSTLHKKIAS 169 (323)
Q Consensus 94 ~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 169 (323)
+++|||||++.+|| |++.+..+........ +++++++|||.++.+...+...+.... .+... ...++
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpN 204 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP------NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPN 204 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCch
Confidence 99999999999998 9999998876655432 558999999999999888877765433 22222 22233
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+............+...+.+ . ....++..||||.|++.++.++++|...|..+..||++|+.++|+.+.++|.. +
T Consensus 205 i~~~v~~~~~~~~q~~fi~~-~--~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~--~ 279 (590)
T COG0514 205 LALKVVEKGEPSDQLAFLAT-V--LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN--D 279 (590)
T ss_pred hhhhhhhcccHHHHHHHHHh-h--ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc--C
Confidence 33332222222334443333 1 11245678999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+.+|+|||.++++|||- ++..||||++|.|...|.|-+||+||.|.+..|++++.+.|....+.+.+.
T Consensus 280 ~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 280 EIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999 999999999999999999999999999999999999999997655555443
No 44
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-35 Score=249.90 Aligned_cols=287 Identities=21% Similarity=0.304 Sum_probs=215.4
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+..+...++ ++|+|+||+.|+.|.++.+++.+......+..++|....+.+...|.. ..|+|+||+.+.+.+..+.+.
T Consensus 51 ~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid 128 (542)
T COG1111 51 ANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRID 128 (542)
T ss_pred HHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccC
Confidence 344556666 999999999999999999999998777789999999998887777766 489999999999999999999
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH-------------------
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD------------------- 149 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~------------------- 149 (323)
+.++.++||||||+-.+.- .+-.+........ .++.++++||||.....+...
T Consensus 129 ~~dv~~lifDEAHRAvGny---AYv~Va~~y~~~~-----k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~D 200 (542)
T COG1111 129 LDDVSLLIFDEAHRAVGNY---AYVFVAKEYLRSA-----KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPD 200 (542)
T ss_pred hHHceEEEechhhhccCcc---hHHHHHHHHHHhc-----cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCcc
Confidence 9999999999999976532 2333333222221 244899999999753333211
Q ss_pred -----------------------------HH-------hcCceeeeccc-------cccc------ccccee--------
Q 047490 150 -----------------------------EE-------CQGIAHLRTST-------LHKK------IASARH-------- 172 (323)
Q Consensus 150 -----------------------------~~-------~~~~~~~~~~~-------~~~~------~~~~~~-------- 172 (323)
.. +...-.+.... .... ..+...
T Consensus 201 V~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~ 280 (542)
T COG1111 201 VRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSV 280 (542)
T ss_pred HHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 00 00000000000 0000 000000
Q ss_pred ----------------------------------------------------------eEEeccCChhHHHHHHHHhccC
Q 047490 173 ----------------------------------------------------------DFIKLSGSENKLEALLQVLEPS 194 (323)
Q Consensus 173 ----------------------------------------------------------~~~~~~~~~~k~~~l~~~l~~~ 194 (323)
.........+|++.+.+++.+.
T Consensus 281 ~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~ 360 (542)
T COG1111 281 LAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQ 360 (542)
T ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHH
Confidence 0011111345888888888776
Q ss_pred C--CCCCeEEEEecCcccHHHHHHHHhhCCCeeE-E--------ecCCCCHHHHHHHHHhccccCCCCCEEEEecccccc
Q 047490 195 L--SKGNKVMVFCNTLNSSRAVDHFLNENQISTV-N--------YHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARG 263 (323)
Q Consensus 195 ~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~--------~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~G 263 (323)
+ ..+.++|||++.+++|+.+...|.+.+..+. . ...||++.++.++++.|++ |+.++||||++.++|
T Consensus 361 ~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~--Ge~nVLVaTSVgEEG 438 (542)
T COG1111 361 LEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK--GEYNVLVATSVGEEG 438 (542)
T ss_pred HhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--CCceEEEEccccccc
Confidence 6 4567999999999999999999998877664 2 2357999999999999999 999999999999999
Q ss_pred cCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 264 LDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 264 id~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+|+ .+|.||+|++-.|...++||.||+||. +.|.++++++..+.
T Consensus 439 LDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 439 LDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred CCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 999 999999999999999999999999999 89999999998743
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-35 Score=278.69 Aligned_cols=275 Identities=20% Similarity=0.311 Sum_probs=199.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.+++|++|+++|+.|+.+.++++.. .++++..++|+...... ....++|+|+||+++..++.+....+++++++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lv 141 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCV 141 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEE
Confidence 467999999999999999999998753 47889889888654332 22347999999999999888766668899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch--hhHHHHHHHhcC----ceeeecccc---ccc
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK--AVQKLVDEECQG----IAHLRTSTL---HKK 166 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~--~~~~~~~~~~~~----~~~~~~~~~---~~~ 166 (323)
|+||+|.+.+.++++.++.++..+.... .+.|++++|||+++ .+..++...... +..+..... ...
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~-----~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~ 216 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLN-----PDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIH 216 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcC-----CCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeec
Confidence 9999999998889999998888776543 24599999999975 333333211110 000000000 000
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-------------------------
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN------------------------- 221 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------------- 221 (323)
... ................+.+.+ ..++++||||++++.|+.+++.|...
T Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (737)
T PRK02362 217 FDD-SQREVEVPSKDDTLNLVLDTL----EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSD 291 (737)
T ss_pred ccc-ccccCCCccchHHHHHHHHHH----HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccC
Confidence 000 000011111122333333333 35689999999999999988877542
Q ss_pred -----------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC-----CCCCc
Q 047490 222 -----------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD-----FPLNS 280 (323)
Q Consensus 222 -----------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~-----~p~s~ 280 (323)
..+++.+||+|++.+|..+++.|++ |.++|||||+++++|+|+ ..++||. |+ .|.+.
T Consensus 292 ~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~--G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~ 369 (737)
T PRK02362 292 TETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD--RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPV 369 (737)
T ss_pred ccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc--CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCH
Confidence 1368899999999999999999999 999999999999999999 5555554 54 58899
Q ss_pred hhhhhhhcccccCCC--cceEEEEeeCC
Q 047490 281 IDYLHRTGRTARMGA--KGKVTSLVAKK 306 (323)
Q Consensus 281 ~~~~Q~~GR~~R~~~--~g~~~~~~~~~ 306 (323)
.+|.||+||+||.|. .|.+++++...
T Consensus 370 ~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 370 LEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999985 48888888664
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=269.30 Aligned_cols=275 Identities=19% Similarity=0.285 Sum_probs=218.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--CCCCCCCc
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--NMVYGDIK 93 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~~~~ 93 (323)
.+-.+||++|.++|.+++.+.++.++...|+.+...+|++......+...++++|+|+|||+|.-++... ...+.+++
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr 151 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR 151 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc
Confidence 4578999999999999999999999999999999999999988888888999999999999998887653 23588999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeeccccccccccce
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+||+||+|.+.+...+.++...+..+..... ++|.|++|||..+. ..+++..... .+.+...... ....
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-----~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~---k~~~ 222 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAG-----DFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAA---KKLE 222 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCc-----ccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccC---Ccce
Confidence 9999999999988888888888888876643 56999999998643 3333222111 1222221111 1111
Q ss_pred eeEEeccCC--------hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC-CeeEEecCCCCHHHHHHHHH
Q 047490 172 HDFIKLSGS--------ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ-ISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 172 ~~~~~~~~~--------~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~ 242 (323)
......... ......+.+.++ +...+|||+||+..+|.++..|+..+ ..+..|||.++.++|..+.+
T Consensus 223 i~v~~p~~~~~~~~~~~~~~~~~i~~~v~----~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 223 IKVISPVEDLIYDEELWAALYERIAELVK----KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred EEEEecCCccccccchhHHHHHHHHHHHh----hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHH
Confidence 111111111 123344444444 45699999999999999999999876 88999999999999999999
Q ss_pred hccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhccccc-CCCcceEEEEeeC
Q 047490 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR-MGAKGKVTSLVAK 305 (323)
Q Consensus 243 ~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R-~~~~g~~~~~~~~ 305 (323)
+|++ |+++.+|||+.++-|||+ +++.||+++.|.+...+.||+||+|+ .+...+++++...
T Consensus 299 ~lk~--G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 299 RLKE--GELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHhc--CCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999 999999999999999999 99999999999999999999999985 5566777777766
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.5e-34 Score=271.79 Aligned_cols=263 Identities=21% Similarity=0.288 Sum_probs=197.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+++++||+||++|+.|+++.+++++...++++..++++......... + .+.++|+|+||..+ .....++++
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L 574 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDL 574 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccC
Confidence 57999999999999999999999988888888888887654433322 2 34589999999532 234568899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+++|+||+|++ +......+..+.. ++++++||||+.+...............+...... ...+..
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~--------~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t 639 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRT--------SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRT 639 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCC--------CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEE
Confidence 99999999974 3344444444332 34899999999876655544444444333322211 112222
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
++.... .......+...+ ..++++++||++.++++.+++.|++. +..+..+||+|++.+|++++++|++ |+
T Consensus 640 ~v~~~~-~~~i~~~i~~el----~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk 712 (926)
T TIGR00580 640 FVMEYD-PELVREAIRREL----LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GE 712 (926)
T ss_pred EEEecC-HHHHHHHHHHHH----HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CC
Confidence 222211 111122233322 35789999999999999999999874 7789999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
.+|||||+++++|+|+ ++++||+++.|. +..+|.|++||+||.|+.|.|++++...
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999 999999999875 6778999999999999999999998653
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.6e-34 Score=265.47 Aligned_cols=264 Identities=17% Similarity=0.267 Sum_probs=192.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc---cc-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED---SL-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.+++|++||++|+.|+++.+++++...++++..++|+........ .+ .+.++|+|+||+.+.. ...+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcc
Confidence 47799999999999999999999999888899999999977544332 22 3458999999986643 345789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++++|+||+|++. ...+..+.... .+.++++||||+.+...............+. ..+.....+.
T Consensus 384 l~lvVIDE~Hrfg-----~~qr~~l~~~~--------~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~ 448 (681)
T PRK10917 384 LGLVIIDEQHRFG-----VEQRLALREKG--------ENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPIT 448 (681)
T ss_pred cceEEEechhhhh-----HHHHHHHHhcC--------CCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcE
Confidence 9999999999752 23333332221 1348999999997665443322111111111 1111111222
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcc--------cHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHH
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLN--------SSRAVDHFLNEN--QISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~ 241 (323)
..+.. ..+...+.+.+......+++++|||+..+ .++.+++.|.+. +..+..+||+|++.+|+.++
T Consensus 449 ~~~~~----~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 524 (681)
T PRK10917 449 TVVIP----DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVM 524 (681)
T ss_pred EEEeC----cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH
Confidence 22222 11223344444443457889999999654 455667777655 46899999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeC
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
++|++ |+.+|||||+++++|+|+ ++++||+++.|. ....+.|++||+||.|..|.|++++..
T Consensus 525 ~~F~~--g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 525 AAFKA--GEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred HHHHc--CCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999 999999999999999999 999999999987 578899999999999999999999963
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.2e-33 Score=260.49 Aligned_cols=266 Identities=16% Similarity=0.236 Sum_probs=191.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.+++|++||++|+.|+++.++++++..++++..++|+......... + .+.++|+|+||+.+.+ ...+.+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~ 357 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKR 357 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccc
Confidence 477999999999999999999999998889999999998776543222 2 3457999999987653 345788
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++++|+||+|++. ...+..+....... ...++++||||+.+...............+. ..+.....+.
T Consensus 358 l~lvVIDEaH~fg-----~~qr~~l~~~~~~~-----~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~~r~~i~ 425 (630)
T TIGR00643 358 LALVIIDEQHRFG-----VEQRKKLREKGQGG-----FTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPPGRKPIT 425 (630)
T ss_pred cceEEEechhhcc-----HHHHHHHHHhcccC-----CCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCCCCCceE
Confidence 9999999999753 22222222211100 1348999999987654433221111111111 0011111122
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcc--------cHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHH
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLN--------SSRAVDHFLNEN--QISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~ 241 (323)
..+. . .. ....+.+.+......+.+++|||+..+ .++.+++.|.+. +..+..+||+|++.+|..++
T Consensus 426 ~~~~--~-~~-~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 426 TVLI--K-HD-EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred EEEe--C-cc-hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 2221 1 12 224555555554457789999999764 455667777653 67899999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEee
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
++|++ |+.+|||||+++++|+|+ ++++||+++.|. +...+.|++||+||.|++|.|++++.
T Consensus 502 ~~F~~--g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 502 EEFRE--GEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHc--CCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999 999999999999999999 999999999986 67889999999999999999999993
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.8e-33 Score=269.86 Aligned_cols=263 Identities=18% Similarity=0.259 Sum_probs=197.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++++++||+||++|+.|+++.+++.+...++++..++++.....+...+ .++++|+|+||+.+. ....+.+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~ 722 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKD 722 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhh
Confidence 4789999999999999999999998777778888888876655544332 246899999997432 3455789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++++|+||+|++ +. .....+..+.. +.+++++|||+.+.........+..+..+...... ...+.
T Consensus 723 L~lLVIDEahrf---G~--~~~e~lk~l~~--------~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~ 787 (1147)
T PRK10689 723 LGLLIVDEEHRF---GV--RHKERIKAMRA--------DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVK 787 (1147)
T ss_pred CCEEEEechhhc---ch--hHHHHHHhcCC--------CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCce
Confidence 999999999986 22 22333433332 44999999999887776665666565555432221 11222
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
..+.... .......++..+ ..+++++|||++.+.++.+++.|++. +..+..+||+|+..+|+.++.+|++ |
T Consensus 788 ~~~~~~~-~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--G 860 (1147)
T PRK10689 788 TFVREYD-SLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--Q 860 (1147)
T ss_pred EEEEecC-cHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--c
Confidence 3222222 111122322222 24679999999999999999999876 6789999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCC-CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFP-LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
+.+|||||+++++|+|+ ++++||+.+.+ .+..+|.|++||+||.|+.|.|++++..
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999 99999966543 3567899999999999999999998864
No 51
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.2e-34 Score=266.86 Aligned_cols=275 Identities=19% Similarity=0.228 Sum_probs=194.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.++|||+|+++|+.|+.+.++.+. ..++++..++|+...... ..++++|+|+||+++..++.+....+++++++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lv 142 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLV 142 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEE
Confidence 36799999999999999999999864 457899999998664322 23457999999999999888766678999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc-c-ceee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-S-ARHD 173 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 173 (323)
|+||+|.+.+.+++..+..++..+.. +.|++++|||+++. . .+...+...... ....+.... . ..+.
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~--------~~qiI~lSATl~n~-~-~la~wl~~~~~~-~~~rpv~l~~~~~~~~ 211 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLG--------RAQILGLSATVGNA-E-ELAEWLNAELVV-SDWRPVKLRKGVFYQG 211 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCc--------CCcEEEEEccCCCH-H-HHHHHhCCcccc-CCCCCCcceeeEecCC
Confidence 99999999888888888888877653 34999999999753 2 222233221111 100011100 0 0011
Q ss_pred EEeccCC-hhH-HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-------------------------------
Q 047490 174 FIKLSGS-ENK-LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE------------------------------- 220 (323)
Q Consensus 174 ~~~~~~~-~~k-~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~------------------------------- 220 (323)
+...... ..+ ...+...+......++++||||++++.|+.++..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 212 FLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred eeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 1111111 111 1122222222223578999999999999887765532
Q ss_pred --CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE-------cCCCC-Cchhhhhhhcc
Q 047490 221 --NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM-------FDFPL-NSIDYLHRTGR 289 (323)
Q Consensus 221 --~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~-------~~~p~-s~~~~~Q~~GR 289 (323)
...++..+|++|++++|..+++.|++ |.++|||||++++.|+|+ ..+.||. ++.|. +..+|.||+||
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~--G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GR 369 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFRE--GLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGR 369 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHC--CCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhc
Confidence 12358899999999999999999999 999999999999999999 5555553 34433 56789999999
Q ss_pred cccCC--CcceEEEEeeCCc
Q 047490 290 TARMG--AKGKVTSLVAKKD 307 (323)
Q Consensus 290 ~~R~~--~~g~~~~~~~~~~ 307 (323)
+||.| ..|.+++++...+
T Consensus 370 AGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 370 AGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCCcCCCceEEEEecCcc
Confidence 99976 5789999887644
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-33 Score=264.14 Aligned_cols=276 Identities=18% Similarity=0.232 Sum_probs=196.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++++. ..+.++....|+...... ....++|+|+||+++..++.++...+++++++|
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvV 140 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIV 140 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEE
Confidence 5689999999999999999999864 457788888887554322 223579999999999998888777788999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc-ccee-eE
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-SARH-DF 174 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 174 (323)
+||+|.+.+.+++..++.++..+.... .+.|+|++|||+++.. .+...+.... +.....+.+.. .+.. ..
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~-----~~~riI~lSATl~n~~--~la~wl~~~~-~~~~~r~vpl~~~i~~~~~ 212 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVN-----PDARILALSATVSNAN--ELAQWLNASL-IKSNFRPVPLKLGILYRKR 212 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcC-----cCCcEEEEeCccCCHH--HHHHHhCCCc-cCCCCCCCCeEEEEEecCe
Confidence 999999988788888888877665432 2459999999997532 1222222211 11100000000 0000 00
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-------------------------CCeeEEec
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------------------------QISTVNYH 229 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------~~~~~~~~ 229 (323)
............+...+.+....++++||||++++.++.+++.|... ..++..+|
T Consensus 213 ~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~h 292 (674)
T PRK01172 213 LILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHH 292 (674)
T ss_pred eeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEec
Confidence 00111111111123333333346789999999999999999887643 12578899
Q ss_pred CCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC---------CCCchhhhhhhcccccCCC--cce
Q 047490 230 GEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF---------PLNSIDYLHRTGRTARMGA--KGK 298 (323)
Q Consensus 230 ~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~---------p~s~~~~~Q~~GR~~R~~~--~g~ 298 (323)
|+|+.++|..+++.|++ |.++|||||+++++|+|++...||+.+. |.+..+|.||+||+||.|. .|.
T Consensus 293 agl~~~eR~~ve~~f~~--g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 293 AGLSNEQRRFIEEMFRN--RYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred CCCCHHHHHHHHHHHHc--CCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 99999999999999999 9999999999999999997778888764 3477889999999999984 667
Q ss_pred EEEEeeCC
Q 047490 299 VTSLVAKK 306 (323)
Q Consensus 299 ~~~~~~~~ 306 (323)
+++++...
T Consensus 371 ~~i~~~~~ 378 (674)
T PRK01172 371 GYIYAASP 378 (674)
T ss_pred EEEEecCc
Confidence 77776544
No 53
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=243.56 Aligned_cols=277 Identities=20% Similarity=0.289 Sum_probs=225.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.+-|+|||..+|++|.++.|+.-..+.++++..-.|......... ....++||||+|++-+..++..+ ..+.+
T Consensus 260 ~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgd 338 (830)
T COG1202 260 GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGD 338 (830)
T ss_pred CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccc
Confidence 37799999999999999999999999999988877777665544432 22345799999999999988876 67899
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+..||+||+|.+-+...++.+.-++..++..++.. |+|.+|||..++..-. ..+..-. ...+..+..+.
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~A-----Q~i~LSATVgNp~elA--~~l~a~l----V~y~~RPVplE 407 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGA-----QFIYLSATVGNPEELA--KKLGAKL----VLYDERPVPLE 407 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCC-----eEEEEEeecCChHHHH--HHhCCee----EeecCCCCChh
Confidence 99999999999998889999999998888877543 9999999997654322 1222111 11223333455
Q ss_pred eeEEeccCChhHHHHHHHHhccCCC------CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLS------KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.+.+...+...|.+.+.++.+...+ -.++||||++++..|+.++..|...|+++..||++++-.+|+.+...|.
T Consensus 408 rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 408 RHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred HeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 5666677677888888777755321 2379999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCCCCCEEEEcC----C-CCCchhhhhhhcccccCC--CcceEEEEeeCC
Q 047490 246 NEDGDCPTLVCTDLAARGLDLDVDHVIMFD----F-PLNSIDYLHRTGRTARMG--AKGKVTSLVAKK 306 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~----~-p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 306 (323)
+ +++.++|+|.+++.|+|++++.||+-. . .-|+++|.|+.||+||.+ ..|+++++..+.
T Consensus 488 ~--q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 488 A--QELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred c--CCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9 999999999999999999999998743 3 349999999999999988 478999998864
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=258.53 Aligned_cols=283 Identities=21% Similarity=0.312 Sum_probs=213.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
|++.+.+. +.+++|+||+++|+.|.+++++ .+...|+++...+|+...... ...+++|+|+|||++..+.++...
T Consensus 68 i~~~l~~~-~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~ 142 (766)
T COG1204 68 ILSTLLEG-GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS 142 (766)
T ss_pred HHHHHHhc-CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc
Confidence 33344443 6799999999999999999999 555679999999999776552 223479999999999999998877
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeecccccc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
....+++||+||+|.+.+...++.++.++........ .++++++|||+++. +..++.-.... ...+......
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~-----~~rivgLSATlpN~~evA~wL~a~~~~-~~~rp~~l~~ 216 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE-----LIRIVGLSATLPNAEEVADWLNAKLVE-SDWRPVPLRR 216 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-----ceEEEEEeeecCCHHHHHHHhCCcccc-cCCCCccccc
Confidence 8889999999999999987789999999988877653 35999999999864 44444332221 1111111122
Q ss_pred ccccceeeEEeccCCh-----hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-------------------
Q 047490 166 KIASARHDFIKLSGSE-----NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN------------------- 221 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~-----~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------- 221 (323)
..+.. ..+....... ...+...+.+......++++||||++++.+...++.+...
T Consensus 217 ~v~~~-~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 217 GVPYV-GAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred CCccc-eEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 22222 2222222111 2334555555556678899999999999999999888730
Q ss_pred ------------------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC-------
Q 047490 222 ------------------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF------- 276 (323)
Q Consensus 222 ------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~------- 276 (323)
..+++.||++++.++|.-+.+.|+. |.++||+||+++..|+|++++.||+-|.
T Consensus 296 ~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~--g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~ 373 (766)
T COG1204 296 ILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK--GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG 373 (766)
T ss_pred cccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc--CCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC
Confidence 1245679999999999999999999 9999999999999999999999998542
Q ss_pred ---CCCchhhhhhhcccccCC--CcceEEEEee
Q 047490 277 ---PLNSIDYLHRTGRTARMG--AKGKVTSLVA 304 (323)
Q Consensus 277 ---p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~ 304 (323)
+-+..++.|+.||+||.| ..|.++++.+
T Consensus 374 g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 374 GIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred CeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 347788999999999998 4666666663
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.8e-32 Score=251.29 Aligned_cols=274 Identities=20% Similarity=0.223 Sum_probs=198.0
Q ss_pred CCCccEEE-EcCCHHHHHHHHHHHHHhcccc-----------------------ceeEEEeecCccCCccccccCCCCCE
Q 047490 15 PRRPRAVV-LCPTRELSEQVFRVAKSISHHA-----------------------RFRSTMVSGGGRLRPQEDSLNNPIDM 70 (323)
Q Consensus 15 ~~~~~~lv-l~P~~~L~~q~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~I 70 (323)
.+.++.|| ++||++|+.|+++.++++.... .+++..++||.....+...+..+++|
T Consensus 59 ~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~I 138 (844)
T TIGR02621 59 AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAV 138 (844)
T ss_pred ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcE
Confidence 34455555 6799999999999999998754 47899999999988888888888999
Q ss_pred EEeChHHHHHHHHcCCC----------------CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEE
Q 047490 71 VVGTPGRILQHIEDGNM----------------VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134 (323)
Q Consensus 71 ii~Tp~~l~~~~~~~~~----------------~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i 134 (323)
+|+|++.+ .+..+ .++++.++|+|||| ++.+|.+.+..|+..+.... ...+.|++
T Consensus 139 IVgT~D~i----~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~---~~rprQtL 209 (844)
T TIGR02621 139 IVGTVDMI----GSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP---DFLPLRVV 209 (844)
T ss_pred EEECHHHH----cCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc---ccccceEE
Confidence 99996544 22222 26789999999999 56679999999988642100 00135999
Q ss_pred EEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhcc-CCCCCCeEEEEecCcccHHH
Q 047490 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP-SLSKGNKVMVFCNTLNSSRA 213 (323)
Q Consensus 135 ~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~~lvf~~~~~~~~~ 213 (323)
+||||++............................+.+ ++... ...|...+...+.. ....++++|||||+++.|+.
T Consensus 210 LFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~ 287 (844)
T TIGR02621 210 ELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRK 287 (844)
T ss_pred EEecCCCccHHHHHHHHccCCceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHH
Confidence 99999988776655555444433322222222223333 33322 23344443333211 12356799999999999999
Q ss_pred HHHHHhhCCCeeEEecCCCCHHHHH-----HHHHhccc----cC-----CCCCEEEEecccccccCCCCCEEEEcCCCCC
Q 047490 214 VDHFLNENQISTVNYHGEVPAQERV-----ENLNKFKN----ED-----GDCPTLVCTDLAARGLDLDVDHVIMFDFPLN 279 (323)
Q Consensus 214 l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----~~-----g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s 279 (323)
+++.|++.++ ..+||+|++.+|. .++++|++ .. +...|||||+++++|+|++.++||++..|
T Consensus 288 L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP-- 363 (844)
T TIGR02621 288 VFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAP-- 363 (844)
T ss_pred HHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCCC--
Confidence 9999998776 8899999999999 77889975 11 12579999999999999966999997776
Q ss_pred chhhhhhhcccccCCCcc-eEEEEe
Q 047490 280 SIDYLHRTGRTARMGAKG-KVTSLV 303 (323)
Q Consensus 280 ~~~~~Q~~GR~~R~~~~g-~~~~~~ 303 (323)
...|+||+||+||.|+.| ..+.++
T Consensus 364 ~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 364 FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHhcccCCCCCCCCceEEEE
Confidence 589999999999999753 334444
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.6e-33 Score=241.50 Aligned_cols=280 Identities=20% Similarity=0.241 Sum_probs=186.0
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC------------cccccc-C-----CCCCEEE
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR------------PQEDSL-N-----NPIDMVV 72 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~-----~~~~Iii 72 (323)
.+.+.++.+++|++|+++|+.|+.+.++.++.. +++.++++.... ...... . ...+|++
T Consensus 23 ~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v 99 (358)
T TIGR01587 23 SIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITV 99 (358)
T ss_pred HHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeee
Confidence 344556789999999999999999999998643 344444432210 000000 0 1257999
Q ss_pred eChHHHHHHHHcCC----CC--CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHH
Q 047490 73 GTPGRILQHIEDGN----MV--YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQK 146 (323)
Q Consensus 73 ~Tp~~l~~~~~~~~----~~--~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 146 (323)
+||+.+...+.... .. .-..+++|+||+|.+.+.++.. +..++..+.. .+.|++++|||+++...+
T Consensus 100 ~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~-------~~~~~i~~SATlp~~l~~ 171 (358)
T TIGR01587 100 CTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD-------NDVPILLMSATLPKFLKE 171 (358)
T ss_pred CCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH-------cCCCEEEEecCchHHHHH
Confidence 99999988766521 01 1123789999999987654332 5555554442 134899999999976665
Q ss_pred HHHHHhcCceeeeccccccccccceeeEEe-ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC--
Q 047490 147 LVDEECQGIAHLRTSTLHKKIASARHDFIK-LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI-- 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-- 223 (323)
+................ .......+.+.. ......+...+.+++.. ...++++||||++.+.++.+++.|++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~ 249 (358)
T TIGR01587 172 YAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEE 249 (358)
T ss_pred HHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCC
Confidence 55443222111000000 000001122211 11122344444444432 23568999999999999999999987665
Q ss_pred eeEEecCCCCHHHHHH----HHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhcccccCCCc---
Q 047490 224 STVNYHGEVPAQERVE----NLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--- 296 (323)
Q Consensus 224 ~~~~~~~~~~~~~r~~----~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~--- 296 (323)
.+..+||++++.+|.. +++.|++ +...+||||+++++|+|++++.||++..| ...|.||+||+||.|+.
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~ilvaT~~~~~GiDi~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~ 325 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVIVATQVIEASLDISADVMITELAP--IDSLIQRLGRLHRYGRKNGE 325 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEEEECcchhceeccCCCEEEEcCCC--HHHHHHHhccccCCCCCCCC
Confidence 5899999999999876 4889998 99999999999999999999999998766 67899999999998843
Q ss_pred -ceEEEEeeCCc
Q 047490 297 -GKVTSLVAKKD 307 (323)
Q Consensus 297 -g~~~~~~~~~~ 307 (323)
|.++++....+
T Consensus 326 ~~~~~v~~~~~~ 337 (358)
T TIGR01587 326 NFEVYIITIAPE 337 (358)
T ss_pred CCeEEEEeecCC
Confidence 36777766543
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.8e-32 Score=245.47 Aligned_cols=258 Identities=14% Similarity=0.177 Sum_probs=181.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+..++|||+||++|+.||.+.++++.......+..+.+|.... .+.+|+|+||+++.+... ..++++++
T Consensus 156 ~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~ 225 (501)
T PHA02558 156 NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGM 225 (501)
T ss_pred cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCE
Confidence 34559999999999999999999998754444555566664322 236899999999876432 24678999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHH--HHHhcCceeeeccccc--------
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLV--DEECQGIAHLRTSTLH-------- 164 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~--~~~~~~~~~~~~~~~~-------- 164 (323)
||+||||++.+. .+..++..+... .+++++||||.+...... ...+.... .......
T Consensus 226 iIvDEaH~~~~~----~~~~il~~~~~~--------~~~lGLTATp~~~~~~~~~~~~~fG~i~-~~v~~~~li~~g~l~ 292 (501)
T PHA02558 226 VIVDECHLFTGK----SLTSIITKLDNC--------KFKFGLTGSLRDGKANILQYVGLFGDIF-KPVTTSQLMEEGQVT 292 (501)
T ss_pred EEEEchhcccch----hHHHHHHhhhcc--------ceEEEEeccCCCccccHHHHHHhhCCce-EEecHHHHHhCCCcC
Confidence 999999998653 455565555322 179999999975432211 11111111 0000000
Q ss_pred --------cccc-----cc-----eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeE
Q 047490 165 --------KKIA-----SA-----RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV 226 (323)
Q Consensus 165 --------~~~~-----~~-----~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 226 (323)
.... .. ...+........+...+.+.+....+.+.+++|||++.++++.+++.|++.+.++.
T Consensus 293 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~ 372 (501)
T PHA02558 293 DLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVY 372 (501)
T ss_pred CceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEE
Confidence 0000 00 00000011122233344444444334678899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHhccccCCCCCEEEEe-cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc
Q 047490 227 NYHGEVPAQERVENLNKFKNEDGDCPTLVCT-DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297 (323)
Q Consensus 227 ~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t-~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g 297 (323)
.+||+++.++|..+++.|++ |...+|||| +.+++|+|+ ++++||++.++.|...|.||+||++|.+..+
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999998 888899998 899999999 9999999999999999999999999987543
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.3e-32 Score=250.83 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=192.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHh-ccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.+++|+.|+++++.|+++.+.+. ....+..++....+.. ....+.+|+|+||+.|.+.+.. ...++++++|
T Consensus 45 ~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~V 117 (819)
T TIGR01970 45 GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGAL 117 (819)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEE
Confidence 569999999999999999998644 3334445554444322 2233468999999999998876 3568999999
Q ss_pred eecchhh-hhcCCChhhH-HHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADT-MFDRGFGPDI-RKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~-~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|. .++.++.-.+ ..+...++ .+.++++||||++... +..++.....+..... ...+.++
T Consensus 118 IiDEaHER~L~~Dl~L~ll~~i~~~lr--------~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~ 183 (819)
T TIGR01970 118 IFDEFHERSLDADLGLALALDVQSSLR--------EDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIR 183 (819)
T ss_pred EEeccchhhhccchHHHHHHHHHHhcC--------CCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeE
Confidence 9999994 5554443222 23333232 2459999999998654 3444443333322211 1123344
Q ss_pred EEeccCChhHH----HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 174 FIKLSGSENKL----EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 174 ~~~~~~~~~k~----~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
|.......... ..+...+.. .++++|||+++..+++.+++.|++ .++.+..+||+|+.++|..+++.|++
T Consensus 184 y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~ 260 (819)
T TIGR01970 184 YLPLRGDQRLEDAVSRAVEHALAS---ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ 260 (819)
T ss_pred EeecchhhhHHHHHHHHHHHHHHh---cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc
Confidence 44333222111 223333332 357899999999999999999987 37889999999999999999999998
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCC------------------CchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------------------NSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
|+.+|+|||+++++|+|+ ++++||++|.|. |...+.||+||+||. .+|.||.+++..+
T Consensus 261 --G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 261 --GRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred --CCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 999999999999999999 999999999875 234589999999999 7999999999876
Q ss_pred HHHH
Q 047490 308 VLLA 311 (323)
Q Consensus 308 ~~~~ 311 (323)
...+
T Consensus 338 ~~~l 341 (819)
T TIGR01970 338 HQRL 341 (819)
T ss_pred HHhh
Confidence 5443
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.6e-31 Score=242.00 Aligned_cols=277 Identities=16% Similarity=0.131 Sum_probs=195.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccc---cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHH---ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..++.+++|++||++|+.|+...+.+..+. .+..+...+|+... ........+.+|+++|+.. ....++
T Consensus 219 ~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~ 290 (675)
T PHA02653 219 NFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLF 290 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccc
Confidence 334679999999999999999999876543 24567778888652 1111222256899999752 113478
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++++||+||+|++...+ +.+..++..+... ..|+++||||++.....+ ..++..+..+.... .....+
T Consensus 291 ~v~~VVIDEaHEr~~~~--DllL~llk~~~~~-------~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV 358 (675)
T PHA02653 291 DYGTVIIDEVHEHDQIG--DIIIAVARKHIDK-------IRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPI 358 (675)
T ss_pred cCCEEEccccccCccch--hHHHHHHHHhhhh-------cCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCe
Confidence 89999999999876533 4444444333211 128999999998777654 56666555544331 122334
Q ss_pred eeeEEeccCC--------hhHHHHHHHHhccC-CCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHH
Q 047490 171 RHDFIKLSGS--------ENKLEALLQVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVE 239 (323)
Q Consensus 171 ~~~~~~~~~~--------~~k~~~l~~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~ 239 (323)
.+.|...... ......+...+... ...++++||||++..+++.+++.|++. +..+..+||+|++. ++
T Consensus 359 ~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq 436 (675)
T PHA02653 359 SEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DE 436 (675)
T ss_pred EEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HH
Confidence 4444332210 11112233333322 124568999999999999999999876 68899999999964 56
Q ss_pred HHHhc-cccCCCCCEEEEecccccccCC-CCCEEEEcC---CCC---------CchhhhhhhcccccCCCcceEEEEeeC
Q 047490 240 NLNKF-KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFD---FPL---------NSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 240 ~~~~f-~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~---~p~---------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
.+++| ++ |+.+|||||+++++|+|+ ++++||++| .|. |.+.|.||+||+||. ++|.|+.+++.
T Consensus 437 ~l~~ff~~--gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~ 513 (675)
T PHA02653 437 ILEKVYSS--KNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDL 513 (675)
T ss_pred HHHHHhcc--CceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECH
Confidence 67777 56 899999999999999999 999999998 554 788999999999999 79999999998
Q ss_pred CcHHHHHHHH
Q 047490 306 KDVLLADRIE 315 (323)
Q Consensus 306 ~~~~~~~~i~ 315 (323)
.+...++++.
T Consensus 514 ~~~~pI~ri~ 523 (675)
T PHA02653 514 DLLKPIKRID 523 (675)
T ss_pred HHhHHHHHHh
Confidence 7765555544
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.8e-31 Score=249.14 Aligned_cols=265 Identities=13% Similarity=0.204 Sum_probs=191.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHH-hccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKS-ISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.+++|++||++++.|+++.+.+ +....+..++...++.... ..+.+|+|+||+.+.+.+.. ...++++++|
T Consensus 48 ~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~I 120 (812)
T PRK11664 48 NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLV 120 (812)
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEE
Confidence 35899999999999999999864 4444455666655553321 22358999999999998876 4568999999
Q ss_pred eecchhhh-hcCCCh-hhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADTM-FDRGFG-PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|.. ++..+. .....+...++ .++++++||||++... +..++.....+.... ....+.++
T Consensus 121 IlDEaHER~l~~Dl~L~ll~~i~~~lr--------~~lqlilmSATl~~~~---l~~~~~~~~~I~~~g---r~~pV~~~ 186 (812)
T PRK11664 121 ILDEFHERSLQADLALALLLDVQQGLR--------DDLKLLIMSATLDNDR---LQQLLPDAPVIVSEG---RSFPVERR 186 (812)
T ss_pred EEcCCCccccccchHHHHHHHHHHhCC--------ccceEEEEecCCCHHH---HHHhcCCCCEEEecC---ccccceEE
Confidence 99999962 222111 11122222222 2459999999998642 334444333332221 11224444
Q ss_pred EEeccCChhHHH-----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLE-----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~-----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
|..... .++.. .+...+.+ .++.+|||+++..+++.+++.|++ .+..+..+||+|+..+|..+++.|+
T Consensus 187 y~~~~~-~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~ 262 (812)
T PRK11664 187 YQPLPA-HQRFDEAVARATAELLRQ---ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAP 262 (812)
T ss_pred eccCch-hhhHHHHHHHHHHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcccc
Confidence 444332 23332 23333332 357999999999999999999987 4778899999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCC------------------CchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------------------NSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+ |+.+|+|||+++++|+|+ ++++||++|.+. |...|.||+||+||. .+|.||.+++..
T Consensus 263 ~--G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 263 A--GRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred C--CCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 8 999999999999999999 999999988764 335799999999999 699999999976
Q ss_pred cHH
Q 047490 307 DVL 309 (323)
Q Consensus 307 ~~~ 309 (323)
+..
T Consensus 340 ~~~ 342 (812)
T PRK11664 340 QAE 342 (812)
T ss_pred HHh
Confidence 553
No 61
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=1.5e-29 Score=240.53 Aligned_cols=282 Identities=23% Similarity=0.372 Sum_probs=200.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..++.++|||+||++|+.|+.+.+++++...+.++..++|+.........+ .+++|+|+||+.+...+......+.+++
T Consensus 55 ~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~ 133 (773)
T PRK13766 55 HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVS 133 (773)
T ss_pred HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 345679999999999999999999998755445777788776654433333 3469999999999888777777888999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-------------------
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG------------------- 154 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~------------------- 154 (323)
+||+||||++.+... ...+........ ....++++||||....... ...+..
T Consensus 134 liVvDEaH~~~~~~~---~~~i~~~~~~~~-----~~~~il~lTaTP~~~~~~i-~~~~~~L~i~~v~~~~~~~~~v~~~ 204 (773)
T PRK13766 134 LLIFDEAHRAVGNYA---YVYIAERYHEDA-----KNPLVLGLTASPGSDEEKI-KEVCENLGIEHVEVRTEDDPDVKPY 204 (773)
T ss_pred EEEEECCcccccccc---HHHHHHHHHhcC-----CCCEEEEEEcCCCCCHHHH-HHHHHhCCceEEEEcCCCChhHHhh
Confidence 999999999865322 222333222221 1237999999984321111 000000
Q ss_pred -------------------------------------ceeeeccc-----cc---------ccccc--------------
Q 047490 155 -------------------------------------IAHLRTST-----LH---------KKIAS-------------- 169 (323)
Q Consensus 155 -------------------------------------~~~~~~~~-----~~---------~~~~~-------------- 169 (323)
........ .. .....
T Consensus 205 ~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 284 (773)
T PRK13766 205 VHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAE 284 (773)
T ss_pred hccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 00000000 00 00000
Q ss_pred --------------------------------------------------ceeeEEeccCChhHHHHHHHHhccCC--CC
Q 047490 170 --------------------------------------------------ARHDFIKLSGSENKLEALLQVLEPSL--SK 197 (323)
Q Consensus 170 --------------------------------------------------~~~~~~~~~~~~~k~~~l~~~l~~~~--~~ 197 (323)
.......+.....|.+.|.+++.+.. ..
T Consensus 285 ~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~ 364 (773)
T PRK13766 285 AMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNP 364 (773)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCC
Confidence 00000001122456777777776543 46
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC--------CCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE--------VPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DV 268 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~ 268 (323)
+.++||||+++.+++.+.+.|...++.+..+||. |+..+|.+++++|++ |+.++||+|+++++|+|+ .+
T Consensus 365 ~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 365 DSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcCCCcccC
Confidence 7899999999999999999998888888888876 898999999999999 999999999999999999 99
Q ss_pred CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 269 DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 269 ~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
++||+|++|+|...|.||+||+||.+ .|.++.++.....
T Consensus 443 ~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred CEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999986 4888888886544
No 62
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2e-29 Score=222.03 Aligned_cols=268 Identities=18% Similarity=0.257 Sum_probs=206.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..|.++..++||.-||.|.++.+.+|++..++++..++|..........+ .+..+|+|+| +.+......+.
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~ 383 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFH 383 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeec
Confidence 44789999999999999999999999999999999999988766654433 4558999999 55666677799
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++.++|+||-|+ |+.+.+..+..-... .+..++|||||.|.+-......-...+.+ ...+.....+
T Consensus 384 ~LgLVIiDEQHR-----FGV~QR~~L~~KG~~-------~Ph~LvMTATPIPRTLAlt~fgDldvS~I--dElP~GRkpI 449 (677)
T COG1200 384 NLGLVIIDEQHR-----FGVHQRLALREKGEQ-------NPHVLVMTATPIPRTLALTAFGDLDVSII--DELPPGRKPI 449 (677)
T ss_pred ceeEEEEecccc-----ccHHHHHHHHHhCCC-------CCcEEEEeCCCchHHHHHHHhccccchhh--ccCCCCCCce
Confidence 999999999996 777777776654331 34899999999887766554433322222 2222222223
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHH--------HHHHHHhhC--CCeeEEecCCCCHHHHHHH
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSR--------AVDHFLNEN--QISTVNYHGEVPAQERVEN 240 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~--------~l~~~l~~~--~~~~~~~~~~~~~~~r~~~ 240 (323)
.-.++.. .+...+.+.+.....+|+++.|.|+-.++.+ .+++.|+.. +..+..+||.|+.++++++
T Consensus 450 ~T~~i~~----~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 450 TTVVIPH----ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred EEEEecc----ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 3333322 3444555555554558899999999877554 555666643 5679999999999999999
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
+++|++ |+.+|||||.+.+.|+|+ +++..|+.+.-. -.++..|..||+||.+.++.|+.++.++.
T Consensus 526 M~~Fk~--~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 526 MEAFKE--GEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHc--CCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999 999999999999999999 999999987543 78889999999999999999999999887
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-29 Score=226.10 Aligned_cols=286 Identities=16% Similarity=0.162 Sum_probs=204.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC-------
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------- 86 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------- 86 (323)
..++.++|++||++||.|.++.+..++...++++..++|+... +.+....+++|+|+|...| ++++..+.
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~ 219 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRAS 219 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhcccccccccccc
Confidence 3478999999999999999999999999999999999999653 2333445689999999998 55655432
Q ss_pred ------------------CCCCCCcEEeecchhhhhcCC------------------ChhhHHHHHhhhcc---------
Q 047490 87 ------------------MVYGDIKYLVLDEADTMFDRG------------------FGPDIRKFLVPLKN--------- 121 (323)
Q Consensus 87 ------------------~~~~~~~~vIiDE~h~~~~~~------------------~~~~~~~i~~~~~~--------- 121 (323)
...+.+.+.|+||+|.++=++ .......+...+..
T Consensus 220 ~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~ 299 (656)
T PRK12898 220 DARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAA 299 (656)
T ss_pred chhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECC
Confidence 223568899999999854100 00001111111100
Q ss_pred -----------------------ccCC------------------------------------CCC-----CC-------
Q 047490 122 -----------------------RASK------------------------------------PNG-----QG------- 130 (323)
Q Consensus 122 -----------------------~~~~------------------------------------~~~-----~~------- 130 (323)
.+.. ..+ ..
T Consensus 300 ~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQ 379 (656)
T PRK12898 300 EKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQ 379 (656)
T ss_pred CCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHH
Confidence 0000 000 00
Q ss_pred -----------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCCh
Q 047490 131 -----------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181 (323)
Q Consensus 131 -----------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (323)
.++.+||||......++...+...+..++..... .....+.++.. ...
T Consensus 380 aieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~-t~~ 456 (656)
T PRK12898 380 MIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFL-TAA 456 (656)
T ss_pred HHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEe-CHH
Confidence 2678889998877666666666555544333222 21222333333 356
Q ss_pred hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 182 ~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
.|...|.+.+......+.++||||++.+.++.+++.|.+.++++..+||+++..++..+...+.. | .|+|||+.++
T Consensus 457 ~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~--g--~VlVATdmAg 532 (656)
T PRK12898 457 AKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQR--G--RITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCC--C--cEEEEccchh
Confidence 78999999887754567899999999999999999999999999999999765554444444333 4 5999999999
Q ss_pred cccCC-CCC--------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 262 RGLDL-DVD--------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 262 ~Gid~-~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|+|+ ... +||+++.|.|.+.|.||+||+||.|.+|.++.+++..|.-
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99998 444 8999999999999999999999999999999999986643
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3e-29 Score=230.05 Aligned_cols=285 Identities=15% Similarity=0.180 Sum_probs=203.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
.++.+.|++||+.||.|.++.+..+....++++..+.|+.....+.+.. .+++|+++||..| ++++.... ..
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~ 196 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKV 196 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhc
Confidence 4789999999999999999999999999999999999987733333322 3489999999999 56555432 35
Q ss_pred CCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhccc---------------------------cCC
Q 047490 89 YGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNR---------------------------ASK 125 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~---------------------------~~~ 125 (323)
++.++++|+||+|.++=.+ .......+...+... ...
T Consensus 197 ~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~ 276 (790)
T PRK09200 197 QRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDN 276 (790)
T ss_pred ccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCcc
Confidence 6889999999999954100 001111111111100 000
Q ss_pred CC-----------------------CCC----------------------------------------------------
Q 047490 126 PN-----------------------GQG---------------------------------------------------- 130 (323)
Q Consensus 126 ~~-----------------------~~~---------------------------------------------------- 130 (323)
.. +.+
T Consensus 277 l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~ 356 (790)
T PRK09200 277 LYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITI 356 (790)
T ss_pred ccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhH
Confidence 00 000
Q ss_pred -------ceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee-eEEeccCChhHHHHHHHHhccCCCCCCeEE
Q 047490 131 -------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH-DFIKLSGSENKLEALLQVLEPSLSKGNKVM 202 (323)
Q Consensus 131 -------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l 202 (323)
.++.+||+|......++.+-+......++.. .+...... ..+. .....|...+.+.+......+.|+|
T Consensus 357 q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~---kp~~r~d~~~~i~-~~~~~K~~al~~~i~~~~~~~~pvL 432 (790)
T PRK09200 357 QNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTN---RPIIRIDYPDKVF-VTLDEKYKAVIEEVKERHETGRPVL 432 (790)
T ss_pred HHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCC---CCcccccCCCeEE-cCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 1566777776444433333332222222111 11111111 1122 2346788999888876545688999
Q ss_pred EEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC----CCC-----EEEE
Q 047490 203 VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL----DVD-----HVIM 273 (323)
Q Consensus 203 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~----~~~-----~vi~ 273 (323)
|||++.+.++.++..|...++++..+||++...++..+...++. | .|+|||+.+++|+|+ .+. +||+
T Consensus 433 If~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~ 508 (790)
T PRK09200 433 IGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--G--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG 508 (790)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--C--eEEEEccchhcCcCCCcccccccccCcEEEe
Confidence 99999999999999999999999999999998888888888876 6 599999999999998 466 9999
Q ss_pred cCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 274 FDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 274 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++.|.|.+.|.||+||+||.|.+|.++.+++..|.-
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 999999999999999999999999999999976553
No 65
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.4e-30 Score=198.43 Aligned_cols=255 Identities=29% Similarity=0.486 Sum_probs=200.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+....++|+|+|++|+.|+.++...+.+.. +.++..++||.......+.+.+-++|+|+||+++..+.++..+.++++
T Consensus 107 v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 107 VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhc
Confidence 3556788999999999999998877776554 579999999999888888888888999999999999999999999999
Q ss_pred cEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccc-cccccc
Q 047490 93 KYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH-KKIASA 170 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 170 (323)
+..|+|||+.++++- .+..+..|....+.. -|..++|||++.++...-.+++..+..+..+... ...-+.
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEifr~tp~~--------KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGL 258 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIFRMTPHE--------KQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGL 258 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHhhcCccc--------ceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhH
Confidence 999999999987632 445556665544432 2899999999999998888888887665544333 334456
Q ss_pred eeeEEeccCC--hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 171 RHDFIKLSGS--ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 171 ~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.++|+..... ..|+..|++.|. ..+++||+.+... +. |+.
T Consensus 259 qQ~YvkLke~eKNrkl~dLLd~Le-----FNQVvIFvKsv~R-------l~------------------------f~k-- 300 (387)
T KOG0329|consen 259 QQYYVKLKENEKNRKLNDLLDVLE-----FNQVVIFVKSVQR-------LS------------------------FQK-- 300 (387)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhh-----hcceeEeeehhhh-------hh------------------------hhh--
Confidence 6666666542 345555555553 4689999988763 10 322
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAI 318 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l 318 (323)
+ +|+|+..++|+|+ +++.+++||+|.+..+|.+|+||+||.|.+|.++.+.+.. |...+..+.+-+
T Consensus 301 ---r-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf 368 (387)
T KOG0329|consen 301 ---R-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRF 368 (387)
T ss_pred ---h-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhh
Confidence 2 8999999999999 9999999999999999999999999999999999999875 445555555543
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.4e-28 Score=223.64 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=187.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--------NMV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--------~~~ 88 (323)
+.++|||||+..|+.||.+++.+|.......+..++|+.... ......|+|+|++.+.....+. .+.
T Consensus 298 ~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~ 372 (732)
T TIGR00603 298 KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLT 372 (732)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhc
Confidence 357999999999999999999999754445666666653221 1223589999999875432221 122
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH--HHHHhcCceeeecccccc-
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL--VDEECQGIAHLRTSTLHK- 165 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~--~~~~~~~~~~~~~~~~~~- 165 (323)
-..|++||+||+|++.. ..+..++..+... ..+++||||....... +...+ .+..+...-...
T Consensus 373 ~~~~gLII~DEvH~lpA----~~fr~il~~l~a~---------~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi 438 (732)
T TIGR00603 373 NREWGLILLDEVHVVPA----AMFRRVLTIVQAH---------CKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQ 438 (732)
T ss_pred cccCCEEEEEccccccH----HHHHHHHHhcCcC---------cEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHH
Confidence 35789999999998743 5566666655443 5899999996433221 22211 121111100000
Q ss_pred ---ccccce--eeEEec--------------------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 166 ---KIASAR--HDFIKL--------------------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 166 ---~~~~~~--~~~~~~--------------------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
...... ..+... .....|...+..++..+...+.++||||++...++.+++.|.
T Consensus 439 ~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~- 517 (732)
T TIGR00603 439 KKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG- 517 (732)
T ss_pred hCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-
Confidence 000000 000000 112346666666665544477899999999999999988873
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCC-CCchhhhhhhcccccCCCcce
Q 047490 221 NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP-LNSIDYLHRTGRTARMGAKGK 298 (323)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~~g~ 298 (323)
+..+||+++..+|..++++|+. .+.+++||+|+++.+|+|+ ++++||+++.| .|..+|.||+||++|.+..|.
T Consensus 518 ----~~~I~G~ts~~ER~~il~~Fr~-~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 518 ----KPFIYGPTSQQERMQILQNFQH-NPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred ----CceEECCCCHHHHHHHHHHHHh-CCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc
Confidence 4568999999999999999986 1377999999999999999 99999999987 599999999999999876554
Q ss_pred E-------EEEeeCC--cHHHHHHHHHHH
Q 047490 299 V-------TSLVAKK--DVLLADRIEEAI 318 (323)
Q Consensus 299 ~-------~~~~~~~--~~~~~~~i~~~l 318 (323)
+ |.+++.. |.....+-.+.|
T Consensus 593 ~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 593 AEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred cccccceEEEEecCCchHHHHHHHHHHHH
Confidence 3 7777765 444444444444
No 67
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=5.8e-29 Score=231.47 Aligned_cols=284 Identities=18% Similarity=0.202 Sum_probs=214.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CC--CCCEEEeChHHHHHHHH--cCCCCC
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NN--PIDMVVGTPGRILQHIE--DGNMVY 89 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~~~Iii~Tp~~l~~~~~--~~~~~~ 89 (323)
+..|||.|..+|+..+...+.. .++....+.++.....+... + .+ ..+|++-|||++...-. .....+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L 380 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL 380 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc
Confidence 4899999999999877666633 36788888887666433222 2 22 47899999999854321 111122
Q ss_pred C---CCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccc
Q 047490 90 G---DIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH 164 (323)
Q Consensus 90 ~---~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (323)
. -+.++|+||||++.+|+ |++.+..+........ +++++++|||....+...+-..+.-...... ...
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~-~~s 453 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP------GVPFIALTATATERVREDVIRSLGLRNPELF-KSS 453 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC------CCCeEEeehhccHHHHHHHHHHhCCCCccee-ccc
Confidence 2 38899999999999999 8898888876554432 3699999999999888887766554322211 111
Q ss_pred cccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhc
Q 047490 165 KKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 244 (323)
...++....+..-.+ ......+...+... ......||||.++.+++.+...|+..+.....||++|++.+|+.|.+.|
T Consensus 454 fnR~NL~yeV~~k~~-~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w 531 (941)
T KOG0351|consen 454 FNRPNLKYEVSPKTD-KDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW 531 (941)
T ss_pred CCCCCceEEEEeccC-ccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH
Confidence 122233322222211 22333333334332 4567999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
.. ++++|++||=++++|||- ++..||||+.|+|...|.|-+|||||.|....|++|+...|...++.+..
T Consensus 532 ~~--~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 532 MS--DKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred hc--CCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99 999999999999999999 99999999999999999999999999999999999999998877776544
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=7.1e-29 Score=238.90 Aligned_cols=258 Identities=16% Similarity=0.259 Sum_probs=190.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC-Cc----ccccc-CCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL-RP----QEDSL-NNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~-~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
++++++||+||++|+.|+.+.++.++...++.+..++++... .. ....+ .++++|+|+||+++.+.+. .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~ 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPK 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccc
Confidence 478999999999999999999999998888888878776542 11 11222 3458999999999988766 3445
Q ss_pred CCCcEEeecchhhhhc-----------CCCh-hhHHHHHhhhccc----------------cCCCCCCCceEEEEEeecc
Q 047490 90 GDIKYLVLDEADTMFD-----------RGFG-PDIRKFLVPLKNR----------------ASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~-----------~~~~-~~~~~i~~~~~~~----------------~~~~~~~~~~~i~~sat~~ 141 (323)
..++++|+||||++++ .||. +.+..++..++.. .....+.+.|++++|||.+
T Consensus 200 ~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~ 279 (1176)
T PRK09401 200 KKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGR 279 (1176)
T ss_pred cccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCC
Confidence 6799999999999986 4564 4566666555430 0000111458999999998
Q ss_pred hh-hHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCccc---HHHHHHH
Q 047490 142 KA-VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNS---SRAVDHF 217 (323)
Q Consensus 142 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~---~~~l~~~ 217 (323)
+. ....+.+ ....+..........++.+.+.... ++...+.+++... +.++||||++... ++.+++.
T Consensus 280 ~~~~~~~l~~---~ll~~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~ 350 (1176)
T PRK09401 280 PRGNRVKLFR---ELLGFEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEY 350 (1176)
T ss_pred ccchHHHHhh---ccceEEecCcccccCCceEEEEEcc---cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHH
Confidence 64 3321111 1112222222334455666666543 4666777777543 3579999999888 9999999
Q ss_pred HhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE----ecccccccCC-C-CCEEEEcCCCC------Cchhhhh
Q 047490 218 LNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC----TDLAARGLDL-D-VDHVIMFDFPL------NSIDYLH 285 (323)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~----t~~~~~Gid~-~-~~~vi~~~~p~------s~~~~~Q 285 (323)
|+..|+.+..+||+| +..+++|++ |+++|||| |+.+++|+|+ + +++|||||.|. ....+.+
T Consensus 351 L~~~gi~v~~~hg~l-----~~~l~~F~~--G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~ 423 (1176)
T PRK09401 351 LEDLGINAELAISGF-----ERKFEKFEE--GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPF 423 (1176)
T ss_pred HHHCCCcEEEEeCcH-----HHHHHHHHC--CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHH
Confidence 999999999999999 233599999 99999999 5889999999 7 89999999998 6677889
Q ss_pred hhcccc
Q 047490 286 RTGRTA 291 (323)
Q Consensus 286 ~~GR~~ 291 (323)
+.||..
T Consensus 424 ~~~r~~ 429 (1176)
T PRK09401 424 LLLRLL 429 (1176)
T ss_pred HHHHHH
Confidence 999985
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=3.8e-29 Score=233.96 Aligned_cols=306 Identities=19% Similarity=0.258 Sum_probs=227.0
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccc--eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
+++.++.+.+..++|+|.||++|++++.++++++....+ +.+....|+...........++++|++|||+++..++.+
T Consensus 105 PIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr 184 (851)
T COG1205 105 PILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLR 184 (851)
T ss_pred HHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhcc
Confidence 455566666777999999999999999999999998887 778888888777777677788899999999999875544
Q ss_pred C----CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 85 G----NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 85 ~----~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
. ...++++++||+||+|.+-. .++.++-.+++.+...+... +.++|+|++|||..+......+ .........
T Consensus 185 ~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~-~~~~q~i~~SAT~~np~e~~~~-l~~~~f~~~- 260 (851)
T COG1205 185 NHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRY-GSPLQIICTSATLANPGEFAEE-LFGRDFEVP- 260 (851)
T ss_pred CcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHHhcc-CCCceEEEEeccccChHHHHHH-hcCCcceee-
Confidence 3 34577899999999998754 48888888888888776433 3578999999999766544333 222222221
Q ss_pred cccccccccceeeEEeccC--------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHH----HHHhhCC----Ce
Q 047490 161 STLHKKIASARHDFIKLSG--------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVD----HFLNENQ----IS 224 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~--------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~----~~l~~~~----~~ 224 (323)
..........++.....+. ...+...+..+.......+-++|+|+.++..++.+. +.+...+ ..
T Consensus 261 v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~ 340 (851)
T COG1205 261 VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDA 340 (851)
T ss_pred ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhh
Confidence 1112222223333332220 123444444555445557889999999999999996 3344344 56
Q ss_pred eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEE
Q 047490 225 TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSL 302 (323)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~ 302 (323)
+..+++++...+|..+..+|+. |+..++++|++++.|+|+ .++.||..+.|. +...+.|+.||+||.++.+..+..
T Consensus 341 v~~~~~~~~~~er~~ie~~~~~--g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 341 VSTYRAGLHREERRRIEAEFKE--GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred eeeccccCCHHHHHHHHHHHhc--CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 7889999999999999999999 999999999999999999 999999999999 999999999999999866655555
Q ss_pred eeC--CcHHHHHHHHHHH
Q 047490 303 VAK--KDVLLADRIEEAI 318 (323)
Q Consensus 303 ~~~--~~~~~~~~i~~~l 318 (323)
... -|.......++.+
T Consensus 419 ~~~~~~d~yy~~~p~~~~ 436 (851)
T COG1205 419 LRSDPLDSYYLRHPEELL 436 (851)
T ss_pred eCCCccchhhhhCcHhhh
Confidence 442 2334444444433
No 70
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=210.47 Aligned_cols=287 Identities=31% Similarity=0.489 Sum_probs=218.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccc---cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHH---ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.|.++|+-|+++|+.|+.+.++++-.. ..++.....||.....+...+.++.+|+|+||+++.+.+......+.+
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 56799999999999999999966666433 345666788888888888899999999999999999999998889999
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHHHhcCceeeeccccccccccc
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++++++||++.++..++.+.+..+...++..++.. ..+|.+++|||+.-. ....-++.+--+.-.... .+...+..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg--~rlq~~vCsatlh~feVkk~~ervmhfptwVdLk-geD~vpet 440 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG--FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLK-GEDLVPET 440 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCC--cccccceeeeEEeEEEeeehhhhhccCceeEecc-cccccchh
Confidence 99999999999999999999999998888876542 357999999998532 222222222111111111 12222233
Q ss_pred eeeEEeccCC--hhHHH----------------------------HHHHHhccC-------CCCCCeEEEEecCcccHHH
Q 047490 171 RHDFIKLSGS--ENKLE----------------------------ALLQVLEPS-------LSKGNKVMVFCNTLNSSRA 213 (323)
Q Consensus 171 ~~~~~~~~~~--~~k~~----------------------------~l~~~l~~~-------~~~~~~~lvf~~~~~~~~~ 213 (323)
.|++...... +.... .-..+++.. .....+.||||.+...|..
T Consensus 441 vHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 441 VHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDN 520 (725)
T ss_pred hccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchH
Confidence 3332222110 01111 111111111 0234689999999999999
Q ss_pred HHHHHhhC---CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcc
Q 047490 214 VDHFLNEN---QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGR 289 (323)
Q Consensus 214 l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR 289 (323)
+.+++.++ .+++..+||+..+.+|++.++.|++ +..+.||||+++.+|+|+ .+..+|+..+|.....|.+|+||
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigr 598 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGR 598 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhc
Confidence 99999876 4578889999999999999999999 999999999999999999 99999999999999999999999
Q ss_pred cccCCCcceEEEEeeCC
Q 047490 290 TARMGAKGKVTSLVAKK 306 (323)
Q Consensus 290 ~~R~~~~g~~~~~~~~~ 306 (323)
+||...-|.+|+++...
T Consensus 599 vgraermglaislvat~ 615 (725)
T KOG0349|consen 599 VGRAERMGLAISLVATV 615 (725)
T ss_pred cchhhhcceeEEEeecc
Confidence 99998888888887653
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=9.8e-29 Score=223.30 Aligned_cols=285 Identities=15% Similarity=0.169 Sum_probs=206.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~~ 89 (323)
+..+.|++||..||.|.++.+.++....++++..+.|+.....+.... .++|+|+||..| ++++..+ ...+
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~ 174 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQ 174 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhc
Confidence 557999999999999999999999999999999999987754443333 379999999999 8888776 3467
Q ss_pred CCCcEEeecchhhhhcCC-Ch----------h-----hHHHHHhhhccc----------------------------cCC
Q 047490 90 GDIKYLVLDEADTMFDRG-FG----------P-----DIRKFLVPLKNR----------------------------ASK 125 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~-~~----------~-----~~~~i~~~~~~~----------------------------~~~ 125 (323)
+.+.++|+||+|.++-.+ .. + ....+...+... ...
T Consensus 175 r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~l 254 (745)
T TIGR00963 175 RPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNL 254 (745)
T ss_pred cccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccc
Confidence 889999999999965210 00 0 001111111000 000
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 047490 126 PNGQG--------------------------------------------------------------------------- 130 (323)
Q Consensus 126 ~~~~~--------------------------------------------------------------------------- 130 (323)
....+
T Consensus 255 y~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~q 334 (745)
T TIGR00963 255 YDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQ 334 (745)
T ss_pred cChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHH
Confidence 00000
Q ss_pred ------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEE
Q 047490 131 ------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVF 204 (323)
Q Consensus 131 ------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf 204 (323)
.++.+||+|...+..++.+-+......++.-........... + ......|..++.+.+.+....+.|+|||
T Consensus 335 n~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~--i-~~t~~~k~~ai~~~i~~~~~~grpvLV~ 411 (745)
T TIGR00963 335 NFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDL--V-YKTEEEKWKAVVDEIKERHAKGQPVLVG 411 (745)
T ss_pred HHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCe--E-EcCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 156677777755444444433333333222211111111111 1 1224568888888776655689999999
Q ss_pred ecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C-------CCEEEEcCC
Q 047490 205 CNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D-------VDHVIMFDF 276 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~-------~~~vi~~~~ 276 (323)
|++...++.+++.|.+.+++...+|++ ..+|+..+..|.. +...|+|||+.+++|+|+ . ..+||+++.
T Consensus 412 t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag--~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~ 487 (745)
T TIGR00963 412 TTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG--RKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER 487 (745)
T ss_pred eCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC--CCceEEEEeccccCCcCCCccchhhcCCcEEEecCC
Confidence 999999999999999999999999998 6788889999987 777899999999999999 7 449999999
Q ss_pred CCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 277 PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 277 p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
|.|.+.|.|+.||+||.|.+|.+..+++..|.-.
T Consensus 488 p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 488 HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred CCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 9999999999999999999999999999876543
No 72
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=2.7e-28 Score=228.95 Aligned_cols=138 Identities=22% Similarity=0.427 Sum_probs=120.6
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHh-hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN-ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
+.|++.|.+++... .+.|+||||++..++..+.+.|+ ..|+.+..+||+|+..+|..+++.|++++|..+|||||.+
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 34677778877664 46799999999999999999994 5699999999999999999999999985557899999999
Q ss_pred cccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 260 AARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
+++|+|+ .+++||+||+|+|+..|.||+||++|.|+.+.+.++....+......+.+.+..
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9999999 999999999999999999999999999999988777776666666666666654
No 73
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.4e-29 Score=225.71 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=205.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC---CCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG---NMVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~---~~~~~ 90 (323)
...+.+++|++|+++||.++.+.+.+-+...|+++..++|+....... -..++|+|+|||+|.-.-+++ ..+++
T Consensus 161 ~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~ 237 (1230)
T KOG0952|consen 161 AKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFS 237 (1230)
T ss_pred ccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhh
Confidence 456789999999999999999999999988899999999997765443 234799999999996554443 24577
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeeeccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLRTSTLHKKIA 168 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 168 (323)
.+++||+||+|.+.+ .+++.++.|+.+...... .....++++++|||+|+-.. +.+++.- +..+......-.+.
T Consensus 238 ~V~LviIDEVHlLhd-~RGpvlEtiVaRtlr~ve-ssqs~IRivgLSATlPN~eD--vA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 238 LVRLVIIDEVHLLHD-DRGPVLETIVARTLRLVE-SSQSMIRIVGLSATLPNYED--VARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred heeeEEeeeehhhcC-cccchHHHHHHHHHHHHH-hhhhheEEEEeeccCCCHHH--HHHHhcCCCccceeeeccccccc
Confidence 899999999998876 589999999887764332 23357899999999997443 2222222 11111111111111
Q ss_pred cceeeEEeccCC----------hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-----------------
Q 047490 169 SARHDFIKLSGS----------ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----------------- 221 (323)
Q Consensus 169 ~~~~~~~~~~~~----------~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------- 221 (323)
.....++-.... ....+++.+. ...|.+++|||.+++.+...++.|.+.
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~----~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k 389 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEF----LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNK 389 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHH----HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhH
Confidence 222222222221 1122333333 357899999999999999888887541
Q ss_pred ------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCC-----------Cchhhh
Q 047490 222 ------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL-----------NSIDYL 284 (323)
Q Consensus 222 ------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~-----------s~~~~~ 284 (323)
..+.+++|.+|...+|.-+...|.. |.++||+||.++..|+|+++.+||+-|.+. +.-+..
T Consensus 390 ~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVl 467 (1230)
T KOG0952|consen 390 QLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVL 467 (1230)
T ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHHhc--CCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHH
Confidence 1456789999999999999999999 999999999999999999999999977652 445668
Q ss_pred hhhcccccCC--CcceEEEEeeCCc
Q 047490 285 HRTGRTARMG--AKGKVTSLVAKKD 307 (323)
Q Consensus 285 Q~~GR~~R~~--~~g~~~~~~~~~~ 307 (323)
|..|||||.+ ..|.++++.+..-
T Consensus 468 QifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHhccCCCCCCCCceEEEEecccH
Confidence 9999999976 5788887777543
No 74
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=217.29 Aligned_cols=298 Identities=21% Similarity=0.309 Sum_probs=203.2
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.|+.++...++.++++++|++-|+.|+...+..++.. ..+....||.........+-...+|+|+||+.+.+.+.+..
T Consensus 96 Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~ 173 (746)
T KOG0354|consen 96 IMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGL 173 (746)
T ss_pred HHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccc
Confidence 3566777777899999999999999999888888764 45666666655444444444456999999999999888765
Q ss_pred CC-CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH----------------
Q 047490 87 MV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD---------------- 149 (323)
Q Consensus 87 ~~-~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~---------------- 149 (323)
.. ++.+.++||||||+.... ..+..++..+..... ...|++++||||.........
T Consensus 174 ~~~ls~fs~iv~DE~Hra~kn---~~Y~~Vmr~~l~~k~----~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ss 246 (746)
T KOG0354|consen 174 HDELSDFSLIVFDECHRTSKN---HPYNNIMREYLDLKN----QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESS 246 (746)
T ss_pred ccccceEEEEEEccccccccc---ccHHHHHHHHHHhhh----ccccEEEEecCCCccHHHHHHHHHhhheecccchhhh
Confidence 43 589999999999987653 234444433222111 122999999999754333211
Q ss_pred ----------------------------------HHhc-----Cceeeec----------cccccccccce---e-----
Q 047490 150 ----------------------------------EECQ-----GIAHLRT----------STLHKKIASAR---H----- 172 (323)
Q Consensus 150 ----------------------------------~~~~-----~~~~~~~----------~~~~~~~~~~~---~----- 172 (323)
.++. ....+.. .......++.. +
T Consensus 247 i~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~ 326 (746)
T KOG0354|consen 247 IKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYA 326 (746)
T ss_pred hhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHH
Confidence 0000 0000000 00000000000 0
Q ss_pred ----------------------------------------------------------eE-EeccCChhHHHHHHHHhcc
Q 047490 173 ----------------------------------------------------------DF-IKLSGSENKLEALLQVLEP 193 (323)
Q Consensus 173 ----------------------------------------------------------~~-~~~~~~~~k~~~l~~~l~~ 193 (323)
+. ...+....|++.+.+.+.+
T Consensus 327 ~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e 406 (746)
T KOG0354|consen 327 LHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVE 406 (746)
T ss_pred HHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHH
Confidence 00 0001124467777776655
Q ss_pred CCC--CCCeEEEEecCcccHHHHHHHHhh-C--CCeeEEec--------CCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 194 SLS--KGNKVMVFCNTLNSSRAVDHFLNE-N--QISTVNYH--------GEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 194 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~-~--~~~~~~~~--------~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
+.+ +..++||||.++..|+.+..+|.. . +.....+- .+|++.++.+++++|+. |+.++||||+++
T Consensus 407 ~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~NvLVATSV~ 484 (746)
T KOG0354|consen 407 QFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINVLVATSVA 484 (746)
T ss_pred HhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccEEEEecch
Confidence 443 446999999999999999999873 2 22333322 37999999999999999 999999999999
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
++|+|+ .|+.||-||...|+..++||+|| ||. +.|+|+.+.+..+....++....
T Consensus 485 EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~~~~ 540 (746)
T KOG0354|consen 485 EEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERNNLA 540 (746)
T ss_pred hccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHHHHh
Confidence 999999 99999999999999999999999 888 68999999985555555544443
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=1e-27 Score=218.07 Aligned_cols=285 Identities=16% Similarity=0.174 Sum_probs=198.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC---CccccccCCCCCEEEeChHHH-HHHHHc------CC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL---RPQEDSLNNPIDMVVGTPGRI-LQHIED------GN 86 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Iii~Tp~~l-~~~~~~------~~ 86 (323)
++.++|++|+++|+.|+++++..+....|+++...+++... .........+++|+++||+.| .+++.. +.
T Consensus 111 g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~ 190 (762)
T TIGR03714 111 GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEG 190 (762)
T ss_pred CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhh
Confidence 55799999999999999999999999999999888776322 111223334689999999999 565543 23
Q ss_pred CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhccc---------------------------c
Q 047490 87 MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNR---------------------------A 123 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~---------------------------~ 123 (323)
..++.+.++|+||||.++-.+ .......++..+... .
T Consensus 191 ~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~ 270 (762)
T TIGR03714 191 KFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKI 270 (762)
T ss_pred cccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCC
Confidence 457789999999999974211 000111111111110 0
Q ss_pred CCCC-CC--------------------C----------------------------------------------------
Q 047490 124 SKPN-GQ--------------------G---------------------------------------------------- 130 (323)
Q Consensus 124 ~~~~-~~--------------------~---------------------------------------------------- 130 (323)
.+.. .. +
T Consensus 271 ~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~I 350 (762)
T TIGR03714 271 DNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASI 350 (762)
T ss_pred CccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeee
Confidence 0000 00 0
Q ss_pred ---------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeE
Q 047490 131 ---------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKV 201 (323)
Q Consensus 131 ---------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 201 (323)
.++.+||+|...+..++.+-+......++............ .+. .....|..++.+.+.+....+.++
T Consensus 351 t~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d--~i~-~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 351 TYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPD--KIY-ATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred eHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCC--eEE-ECHHHHHHHHHHHHHHHhhCCCCE
Confidence 26777777765545554433322222222211111111111 122 224668899998887765678999
Q ss_pred EEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCC----------CCEE
Q 047490 202 MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD----------VDHV 271 (323)
Q Consensus 202 lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~----------~~~v 271 (323)
||||++.+.++.+...|.+.++++..+||++...++..+.+.++. | .|+|||+.+++|+|++ +.+|
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--G--AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--C--eEEEEccccccccCCCCCccccccCCeEEE
Confidence 999999999999999999999999999999999888888888877 7 4999999999999984 5678
Q ss_pred EEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 272 IMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+++++|....+ .||.||+||.|.+|.++.+++..|.-
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 88898876655 99999999999999999999976553
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=6.9e-29 Score=205.45 Aligned_cols=280 Identities=21% Similarity=0.258 Sum_probs=203.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc------CCCCCEEEeChHHHHHH----HHcCCCC
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL------NNPIDMVVGTPGRILQH----IEDGNMV 88 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~Tp~~l~~~----~~~~~~~ 88 (323)
..||+.|..+|+.++.+.+..+- +.+..+.+.....++.+.+ .....+++.|||..... +.+....
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~ 138 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN 138 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh
Confidence 89999999999999988887763 3444444444444433322 33457999999876322 1122233
Q ss_pred CCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHh--cCceeeeccccc
Q 047490 89 YGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC--QGIAHLRTSTLH 164 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (323)
...++|+++||||+..+|| |++.+..+-. ++..+ ..++.+++|||..+.+.+.+-..+ ..++.+...+.
T Consensus 139 r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~-LRS~~-----~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~- 211 (641)
T KOG0352|consen 139 RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS-LRSVC-----PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT- 211 (641)
T ss_pred hceeeeEEechhhhHhhhccccCcchhhhhh-HHhhC-----CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-
Confidence 4568899999999999998 7777665532 33332 245899999999998888765443 33332221111
Q ss_pred cccccceeeEEecc---CChhHHHHHHHHhccCCC-----------CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecC
Q 047490 165 KKIASARHDFIKLS---GSENKLEALLQVLEPSLS-----------KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230 (323)
Q Consensus 165 ~~~~~~~~~~~~~~---~~~~k~~~l~~~l~~~~~-----------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 230 (323)
...+.|+++. .-.+-...|.+.....+. ..+-.||||.+++.++.++-.|...|++...||.
T Consensus 212 ----FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHA 287 (641)
T KOG0352|consen 212 ----FRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHA 287 (641)
T ss_pred ----hhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhc
Confidence 1111222211 112233444443332221 1245799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 231 ~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++...+|-++.++|.+ ++..|+++|..+++|+|- ++..||+++.|.|...|.|-.||+||.|..+.|-+++...|..
T Consensus 288 GLK~~ERTeVQe~WM~--~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 288 GLKKKERTEVQEKWMN--NEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred ccccchhHHHHHHHhc--CCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchH
Confidence 9999999999999999 999999999999999999 9999999999999999999999999999999999999998887
Q ss_pred HHHHHH
Q 047490 310 LADRIE 315 (323)
Q Consensus 310 ~~~~i~ 315 (323)
.++-+.
T Consensus 366 ~i~FLi 371 (641)
T KOG0352|consen 366 ALNFLV 371 (641)
T ss_pred HHHHHH
Confidence 665543
No 77
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=5e-28 Score=237.84 Aligned_cols=278 Identities=15% Similarity=0.206 Sum_probs=196.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEeecCccCCcccc---cc-CCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQED---SL-NNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~-~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
++.+++||+||++|+.|+.+.++.+.... ++++..++|+.....+.. .+ .+.++|+|+||+.+.+.+... ..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~ 198 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KH 198 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hh
Confidence 46799999999999999999999988764 456677788876554432 22 345899999999888766542 22
Q ss_pred CCCcEEeecchhhhhcC-----------CChhhHHH----HHhh---------------hccccCCCCCCCceEEEEEee
Q 047490 90 GDIKYLVLDEADTMFDR-----------GFGPDIRK----FLVP---------------LKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~-----------~~~~~~~~----i~~~---------------~~~~~~~~~~~~~~~i~~sat 139 (323)
.+++++|+||||+++++ +|.+.+.. ++.. +..........+-..+++|||
T Consensus 199 ~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT 278 (1638)
T PRK14701 199 LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASAT 278 (1638)
T ss_pred CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecC
Confidence 67999999999999863 67776654 3210 110000001111136779999
Q ss_pred cchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCccc---HHHHHH
Q 047490 140 MTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNS---SRAVDH 216 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~---~~~l~~ 216 (323)
.++... ....+..+..+..........++.+.+.... ...+ ..+.+++... +.+.||||++.+. |+.+++
T Consensus 279 ~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~-~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~ 351 (1638)
T PRK14701 279 GKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYLNPE-KIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEK 351 (1638)
T ss_pred CCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEEECC-HHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHH
Confidence 985311 1122233333444444445556666665443 2323 5677777653 4588999999886 489999
Q ss_pred HHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec----ccccccCC-C-CCEEEEcCCCC---Cchhhhhhh
Q 047490 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD----LAARGLDL-D-VDHVIMFDFPL---NSIDYLHRT 287 (323)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~----~~~~Gid~-~-~~~vi~~~~p~---s~~~~~Q~~ 287 (323)
.|.+.|+.+..+||+ |...+++|++ |+++|||||. .+.+|+|+ + +.+|||||+|+ |...|.|..
T Consensus 352 ~L~~~Gi~a~~~h~~-----R~~~l~~F~~--G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 352 YLLEDGFKIELVSAK-----NKKGFDLFEE--GEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred HHHHCCCeEEEecch-----HHHHHHHHHc--CCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 999999999999995 8899999999 9999999994 78999999 7 99999999999 777676665
Q ss_pred -------------cccccCCCcceEEEEeeCCcHH
Q 047490 288 -------------GRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 288 -------------GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
||+||.|..+.++..+...+..
T Consensus 425 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 425 YRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred hhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 9999999877666444433433
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=4.7e-27 Score=202.80 Aligned_cols=255 Identities=14% Similarity=0.146 Sum_probs=165.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCC--cc------------------ccccCCCCCEEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLR--PQ------------------EDSLNNPIDMVV 72 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~Iii 72 (323)
+.++++++|+++|++|+.+.++++... .+..+..+.|+...+ .. .....+.+.|++
T Consensus 39 ~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~ill 118 (357)
T TIGR03158 39 ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILL 118 (357)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEE
Confidence 457899999999999999999998743 245566666652211 00 000123578999
Q ss_pred eChHHHHHHHHcCC--------CCCCCCcEEeecchhhhhcCCChh-----hHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 73 GTPGRILQHIEDGN--------MVYGDIKYLVLDEADTMFDRGFGP-----DIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 73 ~Tp~~l~~~~~~~~--------~~~~~~~~vIiDE~h~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
|||+.|..++.... .++.+++++|+||+|.+..+.... ....++..... ..+++++|||
T Consensus 119 T~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~i~lSAT 190 (357)
T TIGR03158 119 TNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC--------RRKFVFLSAT 190 (357)
T ss_pred ecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc--------CCcEEEEecC
Confidence 99999987665421 125789999999999976533211 11222221111 2389999999
Q ss_pred cchhhHHHHHHH--hcCceee-ecc--c---------------cccccccceeeEEeccCChhHH---HHHHHHhccCC-
Q 047490 140 MTKAVQKLVDEE--CQGIAHL-RTS--T---------------LHKKIASARHDFIKLSGSENKL---EALLQVLEPSL- 195 (323)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~-~~~--~---------------~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~- 195 (323)
+++...+.+... ...+... ... . .....+.+.+.+.. ....+. ..+.+.+.+..
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~ 268 (357)
T TIGR03158 191 PDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFR 268 (357)
T ss_pred CCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHh
Confidence 998877776654 2211111 111 0 00011223333333 122232 33333333222
Q ss_pred -CCCCeEEEEecCcccHHHHHHHHhhCC--CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEE
Q 047490 196 -SKGNKVMVFCNTLNSSRAVDHFLNENQ--ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVI 272 (323)
Q Consensus 196 -~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi 272 (323)
..++++||||++.+.++.+++.|++.+ ..+..+||.+++.+|... ++..|||||+++++|+|++.+.||
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~--------~~~~iLVaTdv~~rGiDi~~~~vi 340 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA--------MQFDILLGTSTVDVGVDFKRDWLI 340 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh--------ccCCEEEEecHHhcccCCCCceEE
Confidence 256799999999999999999999764 577889999998887643 456799999999999999444666
Q ss_pred EcCCCCCchhhhhhhcccc
Q 047490 273 MFDFPLNSIDYLHRTGRTA 291 (323)
Q Consensus 273 ~~~~p~s~~~~~Q~~GR~~ 291 (323)
++ |.+...|.||+||+|
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 45 889999999999987
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=9.8e-27 Score=215.96 Aligned_cols=263 Identities=21% Similarity=0.296 Sum_probs=211.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+++|.|||||.-|++|.++.|++-+...++++..++--...+++...+ .+..||+|+| +-+-+....+.++
T Consensus 643 GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdL 717 (1139)
T COG1197 643 GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDL 717 (1139)
T ss_pred CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecC
Confidence 689999999999999999999999999999998887766665554433 4568999999 4455667889999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.++|+||-|+ |+.....-+..++. ++.++-+||||.|.+-.+.-......+.+..++... -..+
T Consensus 718 GLlIIDEEqR-----FGVk~KEkLK~Lr~--------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~ 781 (1139)
T COG1197 718 GLLIIDEEQR-----FGVKHKEKLKELRA--------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVK 781 (1139)
T ss_pred CeEEEechhh-----cCccHHHHHHHHhc--------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC---cceE
Confidence 9999999996 66666776766664 458999999998888777766666655554443322 2233
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.|+...+..--.++++.-+ ..|+++--..|..+..+.+++.|++. ..++.+.||.|++.+-++++.+|.+ |+
T Consensus 782 T~V~~~d~~~ireAI~REl----~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~--g~ 855 (1139)
T COG1197 782 TFVSEYDDLLIREAILREL----LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN--GE 855 (1139)
T ss_pred EEEecCChHHHHHHHHHHH----hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc--CC
Confidence 4443333333334444444 47899999999999999999999986 6688999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
.+|||||.+.+.|+|+ +++++|+.+... -.++..|..||+||..+.++||.++.+.
T Consensus 856 ~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 856 YDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999 999999877654 6888899999999999999999999953
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.95 E-value=1.9e-26 Score=219.81 Aligned_cols=263 Identities=15% Similarity=0.209 Sum_probs=175.4
Q ss_pred cEEEEcC----CHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 19 RAVVLCP----TRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 19 ~~lvl~P----~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++.-| +++++.|+++++..-. |-.++.-. .... ....+++|+|+||+.|++.+... ..++++++
T Consensus 120 ~I~~TQPRRlAArsLA~RVA~El~~~l---G~~VGY~v---rf~~---~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~ 189 (1294)
T PRK11131 120 LIGHTQPRRLAARTVANRIAEELETEL---GGCVGYKV---RFND---QVSDNTMVKLMTDGILLAEIQQD-RLLMQYDT 189 (1294)
T ss_pred ceeeCCCcHHHHHHHHHHHHHHHhhhh---cceeceee---cCcc---ccCCCCCEEEEChHHHHHHHhcC-CccccCcE
Confidence 4445557 4678888888776522 11222111 1111 12345799999999999988764 45899999
Q ss_pred Eeecchhh-hhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 95 LVLDEADT-MFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 95 vIiDE~h~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
||+||+|. +++.++... .+..+... ..+.|+|+||||++.. .+...+...+ .+..... ...+...
T Consensus 190 IIIDEAHERsLn~DfLLg---~Lk~lL~~-----rpdlKvILmSATid~e--~fs~~F~~ap-vI~V~Gr---~~pVei~ 255 (1294)
T PRK11131 190 IIIDEAHERSLNIDFILG---YLKELLPR-----RPDLKVIITSATIDPE--RFSRHFNNAP-IIEVSGR---TYPVEVR 255 (1294)
T ss_pred EEecCccccccccchHHH---HHHHhhhc-----CCCceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCc---cccceEE
Confidence 99999994 666554321 12222111 1245999999999743 3333332222 2222111 1123334
Q ss_pred EEeccCC-----hhHHHHHHHHhccC-CCCCCeEEEEecCcccHHHHHHHHhhCCCe---eEEecCCCCHHHHHHHHHhc
Q 047490 174 FIKLSGS-----ENKLEALLQVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNENQIS---TVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 174 ~~~~~~~-----~~k~~~l~~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f 244 (323)
|...... .+....+++.+... ...++.+|||+++..+++.+++.|+..+.. +..+||+++.++|..+++.
T Consensus 256 y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~- 334 (1294)
T PRK11131 256 YRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS- 334 (1294)
T ss_pred EeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc-
Confidence 4333221 23344444443321 134578999999999999999999887654 6789999999999988775
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCC---------------C---CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF---------------P---LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~---------------p---~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
. |..+|+|||+++++|+|+ ++++||++|. | .|...|.||+||+||. .+|.|+.+++.
T Consensus 335 -~--g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte 410 (1294)
T PRK11131 335 -H--SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSE 410 (1294)
T ss_pred -c--CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCH
Confidence 3 678899999999999999 9999999863 3 4668899999999999 79999999998
Q ss_pred CcHHH
Q 047490 306 KDVLL 310 (323)
Q Consensus 306 ~~~~~ 310 (323)
.+...
T Consensus 411 ~d~~~ 415 (1294)
T PRK11131 411 DDFLS 415 (1294)
T ss_pred HHHHh
Confidence 76543
No 81
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=208.08 Aligned_cols=276 Identities=18% Similarity=0.230 Sum_probs=204.6
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++..+..+++|-.|-++|-+|..+.|++-+.+.| .++|+.. ++..+.++|+|.|.|.+++.++.-..+
T Consensus 334 alaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 334 ALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHhhccceEecchhhhhccchHHHHHHhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhh
Confidence 34566688999999999999999999999887543 6777743 333478999999999999999888899
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeecc-cccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTS-TLHKKI 167 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 167 (323)
++.+|||||+|.+.+.+++.-.+.++.+++.. +++|++|||.|+.. ..|+.+.-......... ..+.+
T Consensus 403 DvE~VIFDEVHYiND~eRGvVWEEViIMlP~H--------V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVP- 473 (1248)
T KOG0947|consen 403 DVEFVIFDEVHYINDVERGVVWEEVIIMLPRH--------VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVP- 473 (1248)
T ss_pred ccceEEEeeeeecccccccccceeeeeecccc--------ceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccc-
Confidence 99999999999999999999999999999875 49999999998754 34444332221111110 11110
Q ss_pred ccceeeEEecc----------------------------------------------------------------CC-hh
Q 047490 168 ASARHDFIKLS----------------------------------------------------------------GS-EN 182 (323)
Q Consensus 168 ~~~~~~~~~~~----------------------------------------------------------------~~-~~ 182 (323)
..+++ +.. .. ..
T Consensus 474 --LEh~l-~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr 550 (1248)
T KOG0947|consen 474 --LEHYL-YTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRR 550 (1248)
T ss_pred --eEEEE-EeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccccccccccc
Confidence 01100 000 00 00
Q ss_pred H---HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--------------------------------------
Q 047490 183 K---LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------------------------------------- 221 (323)
Q Consensus 183 k---~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------- 221 (323)
+ .-.++..+.. ..--|++|||-+++-|++.++.|...
T Consensus 551 ~~~~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~l 628 (1248)
T KOG0947|consen 551 KQPTWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSL 628 (1248)
T ss_pred ccchHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHH
Confidence 1 2222233322 13358999999999999999998651
Q ss_pred -CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCC---------Cchhhhhhhcccc
Q 047490 222 -QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL---------NSIDYLHRTGRTA 291 (323)
Q Consensus 222 -~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~---------s~~~~~Q~~GR~~ 291 (323)
..+++++||++-+--++-+...|.. |-++||+||.++++|+|+++.+||+.+..+ ++.+|.|++||||
T Consensus 629 l~RGiaVHH~GlLPivKE~VE~LFqr--GlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAG 706 (1248)
T KOG0947|consen 629 LLRGIAVHHGGLLPIVKEVVELLFQR--GLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAG 706 (1248)
T ss_pred HhhcchhhcccchHHHHHHHHHHHhc--CceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhcccc
Confidence 2356789999999999999999999 999999999999999999999999987653 7889999999999
Q ss_pred cCC--CcceEEEEeeCC--cHHHHHH
Q 047490 292 RMG--AKGKVTSLVAKK--DVLLADR 313 (323)
Q Consensus 292 R~~--~~g~~~~~~~~~--~~~~~~~ 313 (323)
|+| ..|.++++.... +.+.+++
T Consensus 707 RRGlD~tGTVii~~~~~vp~~a~l~~ 732 (1248)
T KOG0947|consen 707 RRGLDETGTVIIMCKDSVPSAATLKR 732 (1248)
T ss_pred ccccCcCceEEEEecCCCCCHHHHhh
Confidence 999 578888887754 4444433
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.2e-25 Score=201.14 Aligned_cols=275 Identities=17% Similarity=0.185 Sum_probs=183.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.++|||+|+.+|+.|+.+.+++.+ +.++..++++....+.... ..+..+|+|+|+..++ ..++++
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l 94 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNL 94 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCC
Confidence 6689999999999999999999876 3467788887655443222 2345799999998664 347789
Q ss_pred cEEeecchhhhhcCC---ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFDRG---FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++||+||.|....++ ..-+.+.+....... .+.+++++||||+.+........ ................
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~------~~~~vil~SATPsles~~~~~~g--~~~~~~l~~r~~~~~~ 166 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK------FNCPVVLGSATPSLESYHNAKQK--AYRLLVLTRRVSGRKP 166 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHHHHHHh------cCCCEEEEeCCCCHHHHHHHhcC--CeEEeechhhhcCCCC
Confidence 999999999865332 111223332222111 13489999999886655444321 1111111111111111
Q ss_pred ceeeEEeccCCh---hHHHHHHHHhccCCCCCCeEEEEecCccc------------------------------------
Q 047490 170 ARHDFIKLSGSE---NKLEALLQVLEPSLSKGNKVMVFCNTLNS------------------------------------ 210 (323)
Q Consensus 170 ~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~~~lvf~~~~~~------------------------------------ 210 (323)
....+....... .--..+++.+.+.++.++++|||+|++..
T Consensus 167 p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~C 246 (505)
T TIGR00595 167 PEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYC 246 (505)
T ss_pred CeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCC
Confidence 112222222111 12245666666666788899999777543
Q ss_pred ------------------------HHHHHHHHhhC--CCeeEEecCCCCHHHH--HHHHHhccccCCCCCEEEEeccccc
Q 047490 211 ------------------------SRAVDHFLNEN--QISTVNYHGEVPAQER--VENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 211 ------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
.+.+.+.|++. +.++..+|++++...+ +.++++|++ |+.+|||+|+.++.
T Consensus 247 g~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~i~k 324 (505)
T TIGR00595 247 GYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADILIGTQMIAK 324 (505)
T ss_pred cCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEEEeCccccc
Confidence 46777777765 6688899999887665 899999999 99999999999999
Q ss_pred ccCC-CCCEEEEcCCCC------------CchhhhhhhcccccCCCcceEEEEeeCCcHHHH
Q 047490 263 GLDL-DVDHVIMFDFPL------------NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311 (323)
Q Consensus 263 Gid~-~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 311 (323)
|+|+ +++.|++.+... ....|.|++||+||.++.|.+++.....+...+
T Consensus 325 G~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 325 GHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred CCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 9999 999886554331 235689999999999999999877765554433
No 83
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=5.5e-27 Score=206.04 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=202.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.|+||-.|-++|-+|.++++..-++ .++..+|+.... .++..+|+|.+.|..++.+++-.+..+.+||
T Consensus 172 kQRVIYTSPIKALSNQKYREl~~EF~----DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVI 240 (1041)
T KOG0948|consen 172 KQRVIYTSPIKALSNQKYRELLEEFK----DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVI 240 (1041)
T ss_pred cCeEEeeChhhhhcchhHHHHHHHhc----ccceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEE
Confidence 67999999999999999999999887 466677775433 3467899999999999999988899999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeeccccccccccceeeE
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+||+|.|-+.+.+.-.+..+-.++. +++++++|||.|+.. .+|+-..-..++++....... ... ++|
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~--------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRP--TPL-QHy 309 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPD--------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRP--TPL-QHY 309 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccc--------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCC--Ccc-eee
Confidence 9999999998887777766666654 459999999998765 445555555555543322211 112 222
Q ss_pred EeccC--------------ChhHHHHHHHHhccCC------------------------------------CCCCeEEEE
Q 047490 175 IKLSG--------------SENKLEALLQVLEPSL------------------------------------SKGNKVMVF 204 (323)
Q Consensus 175 ~~~~~--------------~~~k~~~l~~~l~~~~------------------------------------~~~~~~lvf 204 (323)
+...+ .++.....+..+.... .+..|+|||
T Consensus 310 ifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvF 389 (1041)
T KOG0948|consen 310 IFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVF 389 (1041)
T ss_pred eecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEE
Confidence 11110 1122222222221100 123489999
Q ss_pred ecCcccHHHHHHHHhhC---------------------------------------CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 205 CNTLNSSRAVDHFLNEN---------------------------------------QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~---------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
+-++++|+.++-.+... ..+++++|+|+-+-.++-+.-.|+
T Consensus 390 SFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFq 469 (1041)
T KOG0948|consen 390 SFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQ 469 (1041)
T ss_pred EecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHh
Confidence 99999999998877541 235678999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCCCCCEEEEcCCCC---------CchhhhhhhcccccCCC--cceEEEEeeCC-cHHHHHH
Q 047490 246 NEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL---------NSIDYLHRTGRTARMGA--KGKVTSLVAKK-DVLLADR 313 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~---------s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~-~~~~~~~ 313 (323)
+ |-+++|+||.++..|+|+++..|++....+ |.-+|+|+.|||||+|. .|-||++++.. +....+.
T Consensus 470 E--GLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 470 E--GLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred c--cHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 9 999999999999999999999999976532 88899999999999994 68888888754 4444443
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=2.9e-25 Score=214.36 Aligned_cols=243 Identities=18% Similarity=0.316 Sum_probs=170.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEE---EeecCccCCcccc---cc-CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRST---MVSGGGRLRPQED---SL-NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~-~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
++++++||+||++|+.|+.+.++++....++.+. .++|+.....+.. .+ .++++|+|+||+++.+.+....
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-- 197 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-- 197 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--
Confidence 3789999999999999999999999877665543 4567765443322 22 3458999999999988766522
Q ss_pred CCCCcEEeecchhhhhc-----------CCChhh-HHHHHhhhc------------------cccCCCCCCCceEEEEEe
Q 047490 89 YGDIKYLVLDEADTMFD-----------RGFGPD-IRKFLVPLK------------------NRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~-----------~~~~~~-~~~i~~~~~------------------~~~~~~~~~~~~~i~~sa 138 (323)
. +++++|+||||++++ .||.+. +..++..++ ...+ .....+++++||
T Consensus 198 ~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~~li~~SA 274 (1171)
T TIGR01054 198 P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP--GKKRGCLIVSSA 274 (1171)
T ss_pred C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh--hccCcEEEEEeC
Confidence 2 899999999999987 356543 444432211 0000 000114677899
Q ss_pred ec-chhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCc---ccHHHH
Q 047490 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTL---NSSRAV 214 (323)
Q Consensus 139 t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~---~~~~~l 214 (323)
|. +......+ +.....+..........++.+.+..... +...+.+++... +.++||||++. +.|+.+
T Consensus 275 T~~p~~~~~~l---~r~ll~~~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l 345 (1171)
T TIGR01054 275 TGRPRGKRAKL---FRELLGFEVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEI 345 (1171)
T ss_pred CCCccccHHHH---cccccceEecCccccccceEEEEEeccc---HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHH
Confidence 94 54443222 1222222223333344556666554332 245566666543 35789999999 999999
Q ss_pred HHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe----cccccccCC-C-CCEEEEcCCCC
Q 047490 215 DHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT----DLAARGLDL-D-VDHVIMFDFPL 278 (323)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t----~~~~~Gid~-~-~~~vi~~~~p~ 278 (323)
++.|++.|+.+..+||+++ +.++++|++ |+++||||| +.+++|+|+ + +++||+||.|.
T Consensus 346 ~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~--G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 346 AEFLENHGVKAVAYHATKP----KEDYEKFAE--GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHhCCceEEEEeCCCC----HHHHHHHHc--CCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999999999997 368999999 999999995 889999999 8 89999999996
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.7e-25 Score=201.80 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=206.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC-CCC-----
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN-MVY----- 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~-~~~----- 89 (323)
+..++|++||++||.|.++++..+....|+++..+.|+.....+.... .++|+|+||+.| ++++..+. ..+
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~ 200 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQ 200 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhc
Confidence 457999999999999999999999999999999999987765554433 479999999999 88888762 323
Q ss_pred CCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcccc------------------------------
Q 047490 90 GDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNRA------------------------------ 123 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~------------------------------ 123 (323)
..+.++|+||+|.++=.+ ....+..++..+....
T Consensus 201 r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~ 280 (896)
T PRK13104 201 RELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL 280 (896)
T ss_pred cccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH
Confidence 589999999999964100 0111111111111100
Q ss_pred ----------CCC-CCCC--------------------------------------------------------------
Q 047490 124 ----------SKP-NGQG-------------------------------------------------------------- 130 (323)
Q Consensus 124 ----------~~~-~~~~-------------------------------------------------------------- 130 (323)
... ...+
T Consensus 281 ~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i 360 (896)
T PRK13104 281 LTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPI 360 (896)
T ss_pred HHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCC
Confidence 000 0000
Q ss_pred -------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHh
Q 047490 131 -------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191 (323)
Q Consensus 131 -------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 191 (323)
.++.+||+|...+..++.+-+......++.-.......... .+. .....|..++.+.+
T Consensus 361 ~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d--~v~-~t~~~k~~av~~~i 437 (896)
T PRK13104 361 QNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEAD--LVY-LTQADKFQAIIEDV 437 (896)
T ss_pred CCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCC--eEE-cCHHHHHHHHHHHH
Confidence 14556666665444444444333333322211111111111 122 22566888888888
Q ss_pred ccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC--
Q 047490 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD-- 269 (323)
Q Consensus 192 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~-- 269 (323)
.+....+.|+||||++...++.+++.|++.+++...+|+.++..++..+.+.|+. |. |+|||+.+++|+|+.+.
T Consensus 438 ~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~--G~--VtIATNmAGRGtDI~Lggn 513 (896)
T PRK13104 438 RECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP--GA--VTIATNMAGRGTDIVLGGS 513 (896)
T ss_pred HHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC--Cc--EEEeccCccCCcceecCCc
Confidence 7777789999999999999999999999999999999999999999999999998 85 99999999999998332
Q ss_pred -------------------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 270 -------------------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 270 -------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
+||-...+.|.+.-.|..||+||.|.+|.+..+++..|.-.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 514 LAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 78888889999999999999999999999999999876543
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=1.7e-24 Score=200.39 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=186.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.++|||+|+++|+.|+.+.+++.+ +.++..++|+....++... ..+.++|+|+|+..++ ..++++
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l 259 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNL 259 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCC
Confidence 6789999999999999999999875 4578888888765443322 2455799999998764 347889
Q ss_pred cEEeecchhhhhcCCC---hhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFDRGF---GPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++||+||+|....+.. .-+.+.+....... .+.+++++|||++.+......... ...+...........
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~------~~~~~il~SATps~~s~~~~~~g~--~~~~~l~~r~~~~~~ 331 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL------ENIPVVLGSATPSLESLANAQQGR--YRLLRLTKRAGGARL 331 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHHHHHhhc------cCCCEEEEcCCCCHHHHHHHhccc--eeEEEeccccccCCC
Confidence 9999999997643221 11223332211111 134899999999866655543321 111111111111111
Q ss_pred ceeeEEeccCC------hhHHHHHHHHhccCCCCCCeEEEEecCcc----------------------------------
Q 047490 170 ARHDFIKLSGS------ENKLEALLQVLEPSLSKGNKVMVFCNTLN---------------------------------- 209 (323)
Q Consensus 170 ~~~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~lvf~~~~~---------------------------------- 209 (323)
.....+..... ......+++.+.+.++.++++|+|+|++.
T Consensus 332 p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 411 (679)
T PRK05580 332 PEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRC 411 (679)
T ss_pred CeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEEC
Confidence 11122222110 01124556666666677889999988632
Q ss_pred --------------------------cHHHHHHHHhhC--CCeeEEecCCCC--HHHHHHHHHhccccCCCCCEEEEecc
Q 047490 210 --------------------------SSRAVDHFLNEN--QISTVNYHGEVP--AQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 210 --------------------------~~~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
-++.+.+.|++. +.++..+|+++. +.+++.++++|++ |+.+|||+|+.
T Consensus 412 h~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~ 489 (679)
T PRK05580 412 HHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR--GEADILIGTQM 489 (679)
T ss_pred CCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc--CCCCEEEEChh
Confidence 345666666664 668888999986 4578899999999 99999999999
Q ss_pred cccccCC-CCCEEEEcCCC--CC----------chhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 260 AARGLDL-DVDHVIMFDFP--LN----------SIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~p--~s----------~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
+..|+|+ +++.|++++.. .+ .+.|.|++||+||.++.|.+++.....+...++.+
T Consensus 490 iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 490 LAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred hccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 9999999 99999766543 22 25689999999999999999988877665544433
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=2.1e-24 Score=206.53 Aligned_cols=267 Identities=15% Similarity=0.183 Sum_probs=178.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCc-cCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
..++++.-|.+--+..+++.+.+.. +..++...|.. ..+.. ...+..|.++|++.|.+.+... ..++++++|
T Consensus 111 ~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d-~~L~~~~~I 183 (1283)
T TIGR01967 111 HGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQD-RFLSRYDTI 183 (1283)
T ss_pred CceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhC-cccccCcEE
Confidence 3467777898887777776666654 23444444431 12221 2335689999999999888764 358899999
Q ss_pred eecchhh-hhcCCChhh-HHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADT-MFDRGFGPD-IRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|. .++.++.-. +..++... .+.++|+||||+.. ..+...+...+ .+.... ....+...
T Consensus 184 IIDEaHERsL~~D~LL~lLk~il~~r---------pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~G---r~~PVev~ 248 (1283)
T TIGR01967 184 IIDEAHERSLNIDFLLGYLKQLLPRR---------PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSG---RTYPVEVR 248 (1283)
T ss_pred EEcCcchhhccchhHHHHHHHHHhhC---------CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECC---CcccceeE
Confidence 9999994 655444322 23332221 24599999999974 23333332222 222211 11122223
Q ss_pred EEeccC-----ChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCC---CeeEEecCCCCHHHHHHHHHhc
Q 047490 174 FIKLSG-----SENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 174 ~~~~~~-----~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f 244 (323)
|..... ..++.+.+.+.+.+.. +.++.+|||+++..+++.+++.|++.+ ..+..+||+|+.+++..+++.+
T Consensus 249 Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 249 YRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC
Confidence 332211 1134444544443321 245799999999999999999998763 4578899999999999885433
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCC------------------CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP------------------LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
+..+|++||+++++|+++ ++++||++|.+ -|...|.||.||+||.+ +|.|+.+++.
T Consensus 329 ----~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte 403 (1283)
T TIGR01967 329 ----SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSE 403 (1283)
T ss_pred ----CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCH
Confidence 336899999999999999 99999999854 36678999999999997 9999999997
Q ss_pred CcHHH
Q 047490 306 KDVLL 310 (323)
Q Consensus 306 ~~~~~ 310 (323)
.+...
T Consensus 404 ~~~~~ 408 (1283)
T TIGR01967 404 EDFNS 408 (1283)
T ss_pred HHHHh
Confidence 76544
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=1.5e-24 Score=191.76 Aligned_cols=251 Identities=21% Similarity=0.258 Sum_probs=170.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
..+|||||+.+|+.||++.+....... ..++...|+..... . ..|.|+|.+++...-....+..+.+++||+
T Consensus 81 ~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~ 152 (442)
T COG1061 81 RSTLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIF 152 (442)
T ss_pred CCEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEE
Confidence 349999999999999998888876532 12333333322111 1 369999999887642112233447999999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH---HHHHhcCceeeecccccccc----ccc
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL---VDEECQGIAHLRTSTLHKKI----ASA 170 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~ 170 (323)
||||++.. +.+..+...+.... .++++||||+...... +...+. +..+......... ...
T Consensus 153 DE~Hh~~a----~~~~~~~~~~~~~~--------~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~ 219 (442)
T COG1061 153 DEVHHLPA----PSYRRILELLSAAY--------PRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPY 219 (442)
T ss_pred EccccCCc----HHHHHHHHhhhccc--------ceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccce
Confidence 99998754 44555555554431 2899999987433111 222221 1111111111100 000
Q ss_pred eeeEEec--c-----------------------------------CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHH
Q 047490 171 RHDFIKL--S-----------------------------------GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRA 213 (323)
Q Consensus 171 ~~~~~~~--~-----------------------------------~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~ 213 (323)
....+.. . ....+...+...+..+. .+.+++|||.+..+++.
T Consensus 220 ~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~ 298 (442)
T COG1061 220 KYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYE 298 (442)
T ss_pred EEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHH
Confidence 0000000 0 01123334444444333 56799999999999999
Q ss_pred HHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhccccc
Q 047490 214 VDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292 (323)
Q Consensus 214 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R 292 (323)
++..|...+. +..+.|..+..+|..+++.|++ |..++|+++.++.+|+|+ +++++|...++.|...|.||+||.-|
T Consensus 299 i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~--g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 299 IAKLFLAPGI-VEAITGETPKEEREAILERFRT--GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc--CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999987776 7889999999999999999999 889999999999999999 99999999999999999999999999
Q ss_pred C
Q 047490 293 M 293 (323)
Q Consensus 293 ~ 293 (323)
.
T Consensus 376 ~ 376 (442)
T COG1061 376 P 376 (442)
T ss_pred C
Confidence 3
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=3.3e-24 Score=200.33 Aligned_cols=270 Identities=19% Similarity=0.244 Sum_probs=169.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEeecCccCCcc---------------------ccccC---CC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQ---------------------EDSLN---NP 67 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~---~~ 67 (323)
.....+++|..||+++++|++++++++.... ..++...+|....... ..++. +.
T Consensus 328 ~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr 407 (878)
T PRK09694 328 QGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKR 407 (878)
T ss_pred hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhh
Confidence 4445799999999999999999998754321 2356677765432110 01111 11
Q ss_pred ---CCEEEeChHHHHHHHHcC-CCCCCCC----cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 68 ---IDMVVGTPGRILQHIEDG-NMVYGDI----KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 68 ---~~Iii~Tp~~l~~~~~~~-~~~~~~~----~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
.+|+|||...++...... ...++.+ ++|||||+|.+ ...+..++..+....... ..++|+||||
T Consensus 408 ~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-----D~ym~~lL~~~L~~l~~~---g~~vIllSAT 479 (878)
T PRK09694 408 VFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-----DAYMYGLLEAVLKAQAQA---GGSVILLSAT 479 (878)
T ss_pred hhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-----CHHHHHHHHHHHHHHHhc---CCcEEEEeCC
Confidence 589999998887554332 2223333 48999999964 333333333222221111 2379999999
Q ss_pred cchhhHHHHHHHhcCce------eeeccc-------cccccc------cceeeE--Eecc-CChhHHHHHHHHhccCCCC
Q 047490 140 MTKAVQKLVDEECQGIA------HLRTST-------LHKKIA------SARHDF--IKLS-GSENKLEALLQVLEPSLSK 197 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~------~~~~~~--~~~~-~~~~k~~~l~~~l~~~~~~ 197 (323)
+|....+.+...+.... .++... ...... ...... .... ........+++.+.+....
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 99887665544322110 000000 000000 001110 0000 0001112333333333346
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCC---CeeEEecCCCCHHHH----HHHHHhc-cccCCC---CCEEEEecccccccCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQER----VENLNKF-KNEDGD---CPTLVCTDLAARGLDL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r----~~~~~~f-~~~~g~---~~ilv~t~~~~~Gid~ 266 (323)
+++++||||+++.|+.+++.|++.+ ..+..+||+++..+| +++++.| ++ |+ ..|||+|++++.|+|+
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~--g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKN--GKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCcCCCeEEEECcchhheeec
Confidence 7899999999999999999998764 578999999999988 4567788 44 44 4699999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhhhcccccCCC
Q 047490 267 DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 267 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 295 (323)
+++.+|....| .+.++||+||++|.+.
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999998878 6789999999999874
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.3e-24 Score=197.56 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=206.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~~ 89 (323)
+..+-|++||..||.|.++.+..++...|+++..+.|+.....+..... ++|+++||..| ++++.... ...
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~ 199 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQ 199 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcc
Confidence 3457799999999999999999999999999999999877766555543 79999999999 88887654 346
Q ss_pred CCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc--------------------------------
Q 047490 90 GDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN-------------------------------- 121 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~-------------------------------- 121 (323)
+.+.++|+||+|.++=.+ ....+..+...+..
T Consensus 200 r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~l 279 (830)
T PRK12904 200 RGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENL 279 (830)
T ss_pred cccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccc
Confidence 789999999999954100 00111111111110
Q ss_pred ------------------ccCCCCCCC-----------------------------------------------------
Q 047490 122 ------------------RASKPNGQG----------------------------------------------------- 130 (323)
Q Consensus 122 ------------------~~~~~~~~~----------------------------------------------------- 130 (323)
......+.+
T Consensus 280 y~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~q 359 (830)
T PRK12904 280 YDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQ 359 (830)
T ss_pred cChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHH
Confidence 000000000
Q ss_pred ------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEE
Q 047490 131 ------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVF 204 (323)
Q Consensus 131 ------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf 204 (323)
.++.+||+|...+..++.+-+......++.-.......... .+ ......|..++.+.+.+....+.|+|||
T Consensus 360 n~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d--~i-~~t~~~K~~aI~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 360 NYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPD--LI-YKTEKEKFDAVVEDIKERHKKGQPVLVG 436 (830)
T ss_pred HHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCC--eE-EECHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 15667777776555444444333333322211111111111 12 1235668899998887655678999999
Q ss_pred ecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC---------------
Q 047490 205 CNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD--------------- 269 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~--------------- 269 (323)
|++...++.+++.|...+++...+|+. ..+|+..+..|.. +...|+|||+.+++|+|+.+.
T Consensus 437 t~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag--~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~ 512 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG--RPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEET 512 (830)
T ss_pred eCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC--CCceEEEecccccCCcCccCCCchhhhhhhhhhhhh
Confidence 999999999999999999999999996 6789999999998 778899999999999999443
Q ss_pred ------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 270 ------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 270 ------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+||-...|.|.+.-.|..||+||.|.+|.+..+++..|.-
T Consensus 513 ~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 513 EEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred hHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 7888899999999999999999999999999999977653
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=8e-24 Score=199.73 Aligned_cols=284 Identities=16% Similarity=0.232 Sum_probs=187.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc---cccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE---DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+||||| .++..||.+++.+|.+ .+++..++|........ ......++|+|+|++.+..... .+..-.|+
T Consensus 219 ~gp~LIVvP-~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~ 293 (1033)
T PLN03142 219 TGPHMVVAP-KSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWR 293 (1033)
T ss_pred CCCEEEEeC-hHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCC
Confidence 357899999 5778999999999986 45677777654322111 1123457999999998865432 22334689
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHH--Hh---------------cC-
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDE--EC---------------QG- 154 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~--~~---------------~~- 154 (323)
+||+||||++-+. ......++..+... ..+++|+||..+ ..++... ++ ..
T Consensus 294 ~VIvDEAHrIKN~--~Sklskalr~L~a~---------~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~ 362 (1033)
T PLN03142 294 YIIIDEAHRIKNE--NSLLSKTMRLFSTN---------YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQIS 362 (1033)
T ss_pred EEEEcCccccCCH--HHHHHHHHHHhhcC---------cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccc
Confidence 9999999998542 33444555555432 578999998532 1111000 00 00
Q ss_pred -----------------ceeeeccc--cccccccceeeEEec--------------------------------------
Q 047490 155 -----------------IAHLRTST--LHKKIASARHDFIKL-------------------------------------- 177 (323)
Q Consensus 155 -----------------~~~~~~~~--~~~~~~~~~~~~~~~-------------------------------------- 177 (323)
+..++... .....+......+.+
T Consensus 363 ~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLR 442 (1033)
T PLN03142 363 GENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLR 442 (1033)
T ss_pred cccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 00000000 000000000000000
Q ss_pred ------------------------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 178 ------------------------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 178 ------------------------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.....|+..|..++......+.++|||++.......+...|...++....++|+++
T Consensus 443 k~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts 522 (1033)
T PLN03142 443 KCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTG 522 (1033)
T ss_pred HHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCC
Confidence 00124555566666655567889999999999999999999989999999999999
Q ss_pred HHHHHHHHHhccccCC-CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC--c
Q 047490 234 AQERVENLNKFKNEDG-DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK--D 307 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g-~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~--~ 307 (323)
..+|..+++.|+++++ ...+|++|.+++.|+|+ .+++||+||+|||+....|++||++|.|+... ++.+++.. |
T Consensus 523 ~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 523 GEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred HHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9999999999987433 34578999999999999 99999999999999999999999999997654 44455543 3
Q ss_pred HHHHHHHHH
Q 047490 308 VLLADRIEE 316 (323)
Q Consensus 308 ~~~~~~i~~ 316 (323)
...+.+..+
T Consensus 603 EkIlera~~ 611 (1033)
T PLN03142 603 EKVIERAYK 611 (1033)
T ss_pred HHHHHHHHH
Confidence 344444433
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=4.5e-24 Score=174.86 Aligned_cols=284 Identities=17% Similarity=0.280 Sum_probs=211.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----c--CCCCCEEEeChHHHHHH---HHc--C
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----L--NNPIDMVVGTPGRILQH---IED--G 85 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~Iii~Tp~~l~~~---~~~--~ 85 (323)
..-+||++|..+|+.+..-.++++ |+....+...+......+. . .....+++.||+++... +.+ .
T Consensus 134 dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 357899999999998888888887 4455555554443332211 1 23467999999998432 222 2
Q ss_pred CCCCCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 163 (323)
.+....+.++-+||+|+-.+|+ |++.+..+-..-++. ++.+++++|||..+.+....+..+.....+... .
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf------~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a 282 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF------KGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-A 282 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC------CCCceeeeehhhhcchhhHHHHHHhHHhhheee-c
Confidence 3456678999999999999888 777666543221211 234899999999888777666554332222111 1
Q ss_pred ccccccceeeEEecc-CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHH
Q 047490 164 HKKIASARHDFIKLS-GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 242 (323)
....++.......-+ ..++.++.+.+.++..+ .|...||||-+.+.++.++..|++.|+....+|..|.+.++...-+
T Consensus 283 ~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 283 GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred ccCCCCceeEeeeCCCChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 122233333333333 34567888888887754 5678899999999999999999999999999999999999999999
Q ss_pred hccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhh------------------------------------
Q 047490 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLH------------------------------------ 285 (323)
Q Consensus 243 ~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q------------------------------------ 285 (323)
.|-. |+++|+|+|-++++|+|- ++..||+..+|+|...|.|
T Consensus 362 ~w~a--~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 362 GWIA--GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccc--cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 9999 999999999999999999 9999999999999999999
Q ss_pred -------hhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 286 -------RTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 286 -------~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
..||+||.+++..|+.++--.|...+...
T Consensus 440 favfsekesgragrd~~~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDDMKADCILYYGFADIFKISSM 475 (695)
T ss_pred eeeecchhccccccCCCcccEEEEechHHHHhHHHH
Confidence 67999999999999999987776554443
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=4.2e-24 Score=196.91 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=200.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCC-CCCCcE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMV-YGDIKY 94 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~-~~~~~~ 94 (323)
..++.|++|.++|++.+...+.+.....++++...+|+.....+. ..+.+|+|||||++...-++. ... .+-+++
T Consensus 364 ~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrL 440 (1674)
T KOG0951|consen 364 PFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRL 440 (1674)
T ss_pred cceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHH
Confidence 358999999999999999999999999999999999986543221 124689999999987655442 122 335789
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce-ee-ecccccccccccee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA-HL-RTSTLHKKIASARH 172 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 172 (323)
+|+||.|.+.+ .+++....+..+..... .......+++++|||+|+-.. +..++.... .+ ..+.. -..-...+
T Consensus 441 lIIDEIHLLhD-dRGpvLESIVaRt~r~s-es~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~s-yRpvPL~q 515 (1674)
T KOG0951|consen 441 LIIDEIHLLHD-DRGPVLESIVARTFRRS-ESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSS-YRPVPLKQ 515 (1674)
T ss_pred Hhhhhhhhccc-ccchHHHHHHHHHHHHh-hhcccCceeeeecccCCchhh--hHHHhccCcccccccCcc-cCcCCccc
Confidence 99999998766 47888888876654432 122235699999999996543 222222111 11 11111 12223445
Q ss_pred eEEeccCC--hhHHHHHHHHh----ccCCCCCCeEEEEecCcccHHHHHHHHhh--------------------------
Q 047490 173 DFIKLSGS--ENKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNE-------------------------- 220 (323)
Q Consensus 173 ~~~~~~~~--~~k~~~l~~~l----~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-------------------------- 220 (323)
+|+-+... ..+.+++-+++ -++..+ +++|||+.+++++...++.++.
T Consensus 516 q~Igi~ek~~~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea 594 (1674)
T KOG0951|consen 516 QYIGITEKKPLKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEA 594 (1674)
T ss_pred eEeccccCCchHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhh
Confidence 55554432 22333332222 223333 7999999999998888887763
Q ss_pred -----------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC-----------CC
Q 047490 221 -----------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF-----------PL 278 (323)
Q Consensus 221 -----------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~-----------p~ 278 (323)
..++++++|.||+..+|..+.+.|.. |.++++++|.+++.|+|++++.||+=+. +.
T Consensus 595 ~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~el 672 (1674)
T KOG0951|consen 595 GQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTEL 672 (1674)
T ss_pred hcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccC
Confidence 24678899999999999999999999 9999999999999999999999998553 34
Q ss_pred CchhhhhhhcccccCC--CcceEEEEeeCCcH
Q 047490 279 NSIDYLHRTGRTARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 279 s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~ 308 (323)
++.+..||.||+||.+ ..|.+++.....+.
T Consensus 673 sp~dv~qmlgragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 673 SPLDVMQMLGRAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred CHHHHHHHHhhcCCCccCcCCceeeccCchHh
Confidence 8899999999999987 35666666555444
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=8.2e-24 Score=193.23 Aligned_cols=293 Identities=17% Similarity=0.190 Sum_probs=205.8
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHc
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIED 84 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~ 84 (323)
.++...+..-.|..+-+++|+.-||.|-++.+..++..+|++++.+.++.......... .++|.++|...| ++++..
T Consensus 110 A~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD 187 (796)
T PRK12906 110 ATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRD 187 (796)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhh
Confidence 34444455556788999999999999999999999999999999998876555443333 469999999888 455554
Q ss_pred CC------CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcccc-------------------
Q 047490 85 GN------MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNRA------------------- 123 (323)
Q Consensus 85 ~~------~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~------------------- 123 (323)
+. ...+.+.+.|+||+|.++=.+ ....+..+...+....
T Consensus 188 ~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~ 267 (796)
T PRK12906 188 NMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKT 267 (796)
T ss_pred ccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEccc
Confidence 31 234678899999999954100 0111122222211100
Q ss_pred -------------------CCCC-CCC-----------------------------------------------------
Q 047490 124 -------------------SKPN-GQG----------------------------------------------------- 130 (323)
Q Consensus 124 -------------------~~~~-~~~----------------------------------------------------- 130 (323)
.... ..+
T Consensus 268 k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQa 347 (796)
T PRK12906 268 KTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQA 347 (796)
T ss_pred CceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHH
Confidence 0000 000
Q ss_pred ----------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE--EeccCC
Q 047490 131 ----------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF--IKLSGS 180 (323)
Q Consensus 131 ----------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 180 (323)
.++.+||+|...+..++.+-+......++.- . +..+... ......
T Consensus 348 ieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtn---k--p~~r~d~~d~i~~t~ 422 (796)
T PRK12906 348 IEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTN---R--PVIRKDSPDLLYPTL 422 (796)
T ss_pred HHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCC---C--CeeeeeCCCeEEcCH
Confidence 1555666666544333333222222222111 1 1111111 111224
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
..|..++.+.+......+.|+||||++...++.++..|.+.+++...+|+++...++..+.+.++. |. |+|||+.+
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATnmA 498 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATNMA 498 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce--EEEEeccc
Confidence 568888888887655688999999999999999999999999999999999998888888888887 77 99999999
Q ss_pred ccccCCC----CC-----EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 261 ARGLDLD----VD-----HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 261 ~~Gid~~----~~-----~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++|+|+. +. +||+++.|.|.+.|.|+.||+||.|.+|.+..+++..|.-
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchH
Confidence 9999982 56 9999999999999999999999999999999999987653
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.7e-23 Score=165.40 Aligned_cols=275 Identities=18% Similarity=0.238 Sum_probs=196.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..|.++.+..|..+.+.+++.++++.+. +..+..++|++....+ .+++|+|...++++. +.+++
T Consensus 142 ~~G~~vciASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~ 205 (441)
T COG4098 142 NQGGRVCIASPRVDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDL 205 (441)
T ss_pred hcCCeEEEecCcccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccE
Confidence 3478999999999999999999999886 4578889998665443 479999998888754 36889
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||+|...-. -...+...+...... . =..|.+|||+++.+.+.+...-.....+.... ..-+-+...+
T Consensus 206 liIDEVDAFP~~-~d~~L~~Av~~ark~---~----g~~IylTATp~k~l~r~~~~g~~~~~klp~Rf--H~~pLpvPkf 275 (441)
T COG4098 206 LIIDEVDAFPFS-DDQSLQYAVKKARKK---E----GATIYLTATPTKKLERKILKGNLRILKLPARF--HGKPLPVPKF 275 (441)
T ss_pred EEEecccccccc-CCHHHHHHHHHhhcc---c----CceEEEecCChHHHHHHhhhCCeeEeecchhh--cCCCCCCCce
Confidence 999999975321 123333333333221 1 16899999999888776655433333332222 2222222233
Q ss_pred EeccCChhHH------HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 175 IKLSGSENKL------EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 175 ~~~~~~~~k~------~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+..+-..++ ..|...|+.....+.|++||+++....+.+++.|+.. ...+...|+.. ..|.+..++|++
T Consensus 276 ~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~ 353 (441)
T COG4098 276 VWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRD 353 (441)
T ss_pred EEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHc
Confidence 4443323222 2566677666678899999999999999999999554 33446778764 478899999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCC--CCchhhhhhhcccccCC--CcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP--LNSIDYLHRTGRTARMG--AKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p--~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|++.+||+|.++++|+.+ +++..+.-.-. .+.....|.+||+||.- ..|.+..|......++.+.+.++-+
T Consensus 354 --G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~ 429 (441)
T COG4098 354 --GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKE 429 (441)
T ss_pred --CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHH
Confidence 999999999999999999 88876664433 47788899999999976 3688888887777777777666543
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=6.1e-23 Score=190.73 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=197.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.+++|..|.++|.+|.++.+...+.+..--++..+|+.. .+.++.++|+|.|.|.+++.+....+..+.+
T Consensus 160 ~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ 232 (1041)
T COG4581 160 RDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEW 232 (1041)
T ss_pred HcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccce
Confidence 446779999999999999999999987643223466666643 3445789999999999999999888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeecccccccccccee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
||+||+|.+.+...+...+.++..++.. ++++++|||.++.. ..|++..-..+.++... ........+
T Consensus 233 ViFDEvHyi~D~eRG~VWEE~Ii~lP~~--------v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t--~~RpvPL~~ 302 (1041)
T COG4581 233 VVFDEVHYIGDRERGVVWEEVIILLPDH--------VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST--EHRPVPLEH 302 (1041)
T ss_pred EEEEeeeeccccccchhHHHHHHhcCCC--------CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee--cCCCCCeEE
Confidence 9999999999998999899999888764 49999999998654 44555443333332221 111222222
Q ss_pred eEEec------cCChhH--------H---------------------------------------HHHHHHhccCCCCCC
Q 047490 173 DFIKL------SGSENK--------L---------------------------------------EALLQVLEPSLSKGN 199 (323)
Q Consensus 173 ~~~~~------~~~~~k--------~---------------------------------------~~l~~~l~~~~~~~~ 199 (323)
++..- .+...+ . ..+...+.. .+.-
T Consensus 303 ~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~l 380 (1041)
T COG4581 303 FVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLL 380 (1041)
T ss_pred EEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCC
Confidence 21111 000000 0 011111111 2345
Q ss_pred eEEEEecCcccHHHHHHHHhh----------------------------CC-------------CeeEEecCCCCHHHHH
Q 047490 200 KVMVFCNTLNSSRAVDHFLNE----------------------------NQ-------------ISTVNYHGEVPAQERV 238 (323)
Q Consensus 200 ~~lvf~~~~~~~~~l~~~l~~----------------------------~~-------------~~~~~~~~~~~~~~r~ 238 (323)
|+|+|+-++..|+.++..+.. .+ ..++++|++|=+..+.
T Consensus 381 P~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~ 460 (1041)
T COG4581 381 PAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKE 460 (1041)
T ss_pred ceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHH
Confidence 899999999999988776642 01 1345799999999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCC---------CCchhhhhhhcccccCCC--cceEEEEeeC
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFP---------LNSIDYLHRTGRTARMGA--KGKVTSLVAK 305 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~ 305 (323)
.+.+.|.+ |-++|+++|.+++.|+|+++..|+++... -+..+|.|+.||+||.|. .|.++++..+
T Consensus 461 ~vE~Lfq~--GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 461 LVEELFQE--GLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHhc--cceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 99999999 99999999999999999999999998653 389999999999999994 6777777443
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.4e-22 Score=185.66 Aligned_cols=285 Identities=13% Similarity=0.157 Sum_probs=205.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC-CCC-----
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG-NMV----- 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~-~~~----- 88 (323)
.+..|.||+|+..||.|.++++..+...+|+++..+.++.+..... -..+++|+++||..| ++++..+ ...
T Consensus 122 ~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~v 199 (908)
T PRK13107 122 TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERV 199 (908)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhh
Confidence 3455999999999999999999999999999999998886653322 223579999999999 8888776 222
Q ss_pred CCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc-------------------------------
Q 047490 89 YGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN------------------------------- 121 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~------------------------------- 121 (323)
.+.+.++|+||+|.++-.+ ....+..++..+..
T Consensus 200 qr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~ 279 (908)
T PRK13107 200 QRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQ 279 (908)
T ss_pred ccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHH
Confidence 3778999999999965211 00011111111110
Q ss_pred -----cc---------CCCC-C--------------------CC------------------------------------
Q 047490 122 -----RA---------SKPN-G--------------------QG------------------------------------ 130 (323)
Q Consensus 122 -----~~---------~~~~-~--------------------~~------------------------------------ 130 (323)
.. .... . .+
T Consensus 280 ~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEa 359 (908)
T PRK13107 280 EKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEA 359 (908)
T ss_pred HHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHH
Confidence 00 0000 0 00
Q ss_pred -------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHH
Q 047490 131 -------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185 (323)
Q Consensus 131 -------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 185 (323)
.++.+||+|...+..++.+-+......++.-.......... .+. .....|..
T Consensus 360 KE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d--~iy-~t~~~K~~ 436 (908)
T PRK13107 360 KEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMAD--LVY-LTADEKYQ 436 (908)
T ss_pred hcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCC--cEE-eCHHHHHH
Confidence 14566666665544444443333333322211111111111 111 23467888
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccC
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid 265 (323)
++.+.+.+....|.|+||||++...++.++..|...+++...+|+.++..++..+.+.|+. |. |+|||+.+++|+|
T Consensus 437 Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~--VtIATnmAGRGTD 512 (908)
T PRK13107 437 AIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--GA--VTIATNMAGRGTD 512 (908)
T ss_pred HHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--Cc--EEEecCCcCCCcc
Confidence 8888887776789999999999999999999999999999999999999999999999998 88 9999999999999
Q ss_pred CCCC--------------------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 266 LDVD--------------------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 266 ~~~~--------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
+.+. +||-...+.|.+.-.|..||+||.|.+|.+..+++..|
T Consensus 513 IkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 513 IVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred eecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 8332 78888999999999999999999999999999999876
Q ss_pred HH
Q 047490 308 VL 309 (323)
Q Consensus 308 ~~ 309 (323)
.-
T Consensus 593 ~L 594 (908)
T PRK13107 593 SL 594 (908)
T ss_pred HH
Confidence 63
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=4e-22 Score=191.52 Aligned_cols=267 Identities=18% Similarity=0.232 Sum_probs=164.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-----
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG----- 85 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~----- 85 (323)
.+...+..++|+|+|+.+|+.|+.+.++.+..........+++...... ........|+|+|++++.+.+...
T Consensus 457 L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~ 534 (1123)
T PRK11448 457 LLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMD 534 (1123)
T ss_pred HHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccc
Confidence 3445556799999999999999999999875432212211221111011 111234689999999997765321
Q ss_pred CCCCCCCcEEeecchhhhhcC------C---------ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHH
Q 047490 86 NMVYGDIKYLVLDEADTMFDR------G---------FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~------~---------~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 150 (323)
...+..+++||+||||+.... + +...++.++..+.. ..|++||||...+...+..
T Consensus 535 ~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA----------~~IGLTATP~r~t~~~FG~ 604 (1123)
T PRK11448 535 KPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDA----------VKIGLTATPALHTTEIFGE 604 (1123)
T ss_pred cCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCc----------cEEEEecCCccchhHHhCC
Confidence 135678999999999985310 0 12456666665432 5899999997554332211
Q ss_pred Hh--------------cC---ceeeecccccc--cccc------cee---eE--EeccC--------------ChhHH--
Q 047490 151 EC--------------QG---IAHLRTSTLHK--KIAS------ARH---DF--IKLSG--------------SENKL-- 184 (323)
Q Consensus 151 ~~--------------~~---~~~~~~~~~~~--~~~~------~~~---~~--~~~~~--------------~~~k~-- 184 (323)
.. -. +..+....... .... ... .. ...+. .+...
T Consensus 605 pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~ 684 (1123)
T PRK11448 605 PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRV 684 (1123)
T ss_pred eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHH
Confidence 00 00 00000000000 0000 000 00 00000 00011
Q ss_pred --HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---------CCeeEEecCCCCHHHHHHHHHhccccCCCC-C
Q 047490 185 --EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---------QISTVNYHGEVPAQERVENLNKFKNEDGDC-P 252 (323)
Q Consensus 185 --~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~-~ 252 (323)
..+.+.+.. ..++|+||||.+..+|+.+++.|.+. +..+..++|+++ ++.+++++|++ +.. .
T Consensus 685 i~~~l~~~l~~--~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~ 758 (1123)
T PRK11448 685 VCEELAKYLDP--TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPN 758 (1123)
T ss_pred HHHHHHHHHhc--cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCe
Confidence 122222222 13479999999999999998887652 124456888876 56789999998 665 5
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 295 (323)
|+|+++.+.+|+|+ ++++||++.++.|...|.|++||+.|...
T Consensus 759 IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 759 IVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred EEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 89999999999999 89999999999999999999999999753
No 99
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.89 E-value=8.9e-22 Score=174.08 Aligned_cols=272 Identities=17% Similarity=0.244 Sum_probs=189.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc--c-cCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED--S-LNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..+|| -||++|...| ..|.+++++|.+ ++++..++|+........ . ..++++|+|||++...+- ...+.--
T Consensus 215 ~~~GP-fLVi~P~StL-~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~ 288 (971)
T KOG0385|consen 215 GIPGP-FLVIAPKSTL-DNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKF 288 (971)
T ss_pred CCCCC-eEEEeeHhhH-HHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcC
Confidence 34454 5788997665 558889999988 568999999865433221 1 234789999999988664 2223344
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch-hhHHHH---------------------
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK-AVQKLV--------------------- 148 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~-~~~~~~--------------------- 148 (323)
+|+|+||||+|++-+ ....+..++..+... ..+++|+||-. .+.+..
T Consensus 289 ~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~~---------nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF 357 (971)
T KOG0385|consen 289 NWRYLVIDEAHRIKN--EKSKLSKILREFKTD---------NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWF 357 (971)
T ss_pred CceEEEechhhhhcc--hhhHHHHHHHHhccc---------ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHH
Confidence 799999999999865 345555666666544 46788888742 221110
Q ss_pred --------------------------------------------------------------------------------
Q 047490 149 -------------------------------------------------------------------------------- 148 (323)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (323)
T Consensus 358 ~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI 437 (971)
T KOG0385|consen 358 DFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNI 437 (971)
T ss_pred cccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHH
Confidence
Q ss_pred ----HHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 149 ----DEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
..+|.++.-+.. ..+..+.....+. .....|+..|-++|....+.|.++|||.+-.....-+-.++.-.++.
T Consensus 438 ~mQLRKccnHPYLF~g-~ePg~pyttdehL---v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ 513 (971)
T KOG0385|consen 438 MMQLRKCCNHPYLFDG-AEPGPPYTTDEHL---VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYE 513 (971)
T ss_pred HHHHHHhcCCccccCC-CCCCCCCCcchHH---HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCce
Confidence 011111111111 0000111111111 11234666666666666678999999999999999888888888999
Q ss_pred eEEecCCCCHHHHHHHHHhccccCCC-CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEE
Q 047490 225 TVNYHGEVPAQERVENLNKFKNEDGD-CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302 (323)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~f~~~~g~-~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 302 (323)
.+.+.|.++-++|...++.|+.++++ .-+|++|.+.+.|||+ .+++||+||..||+.--.|++.|++|.|+...|.++
T Consensus 514 ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 514 YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred eEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 99999999999999999999996543 4578999999999999 999999999999999999999999999987655554
Q ss_pred eeCC
Q 047490 303 VAKK 306 (323)
Q Consensus 303 ~~~~ 306 (323)
-.-.
T Consensus 594 RLit 597 (971)
T KOG0385|consen 594 RLIT 597 (971)
T ss_pred EEec
Confidence 4433
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=5.4e-22 Score=179.63 Aligned_cols=283 Identities=17% Similarity=0.221 Sum_probs=202.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--CCCCCCCcE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--NMVYGDIKY 94 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~~~~~ 94 (323)
...++.+.|..+.+.+-...+..+....|+.+...+|........ ..-.+.|+|-|+-..+++.. .-.+..+.+
T Consensus 269 rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~ 344 (1008)
T KOG0950|consen 269 RRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGM 344 (1008)
T ss_pred hhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCc
Confidence 457888999999999999999999999998888877554433222 23479999999886665542 234667899
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeeccccccccccce-
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHKKIASAR- 171 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (323)
||+||.|.+.+.+.+...+.++.++...+... .+|+|+||||+++. +..+++...... ...+....+..
T Consensus 345 vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~---~~~iIGMSATi~N~~lL~~~L~A~~y~t-----~fRPv~L~E~ik 416 (1008)
T KOG0950|consen 345 VVVDELHMIGDKGRGAILELLLAKILYENLET---SVQIIGMSATIPNNSLLQDWLDAFVYTT-----RFRPVPLKEYIK 416 (1008)
T ss_pred EEEeeeeeeeccccchHHHHHHHHHHHhcccc---ceeEeeeecccCChHHHHHHhhhhheec-----ccCcccchhccC
Confidence 99999999999999999999988887665433 37899999999853 444444332211 01111110000
Q ss_pred --eeEEeccCChhHH----------------HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-------------
Q 047490 172 --HDFIKLSGSENKL----------------EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE------------- 220 (323)
Q Consensus 172 --~~~~~~~~~~~k~----------------~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~------------- 220 (323)
...+... ...-. +.+..++.+...++.++||||++++-|+.++..+..
T Consensus 417 ~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~ 495 (1008)
T KOG0950|consen 417 PGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLG 495 (1008)
T ss_pred CCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhh
Confidence 0000000 00000 223333333334566899999999999988765532
Q ss_pred -------------------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcC
Q 047490 221 -------------------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFD 275 (323)
Q Consensus 221 -------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~ 275 (323)
...+++++|.++..++|+.+...|++ |...|++||+++..|+|+++..||+-.
T Consensus 496 ~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~--g~i~vl~aTSTlaaGVNLPArRVIira 573 (1008)
T KOG0950|consen 496 LWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE--GNIFVLVATSTLAAGVNLPARRVIIRA 573 (1008)
T ss_pred HHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHh--cCeEEEEecchhhccCcCCcceeEEeC
Confidence 14577889999999999999999999 999999999999999999888888754
Q ss_pred C-----CCCchhhhhhhcccccCC--CcceEEEEeeCCcHHHHHHH
Q 047490 276 F-----PLNSIDYLHRTGRTARMG--AKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 276 ~-----p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~i 314 (323)
+ +.+.-+|.|++||+||.| ..|.++.++...|......+
T Consensus 574 P~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 574 PYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred CccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 3 348889999999999998 57899999999887555433
No 101
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.8e-20 Score=166.59 Aligned_cols=273 Identities=18% Similarity=0.268 Sum_probs=191.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc-------------ccccCCCCCEEEeChHHHHHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ-------------EDSLNNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Iii~Tp~~l~~~~~ 83 (323)
...+||||| ..++.||.+++..|++.. ++..+++....... .+....+..|+++|++.|.-.
T Consensus 255 ~~paLIVCP-~Tii~qW~~E~~~w~p~~--rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-- 329 (923)
T KOG0387|consen 255 TKPALIVCP-ATIIHQWMKEFQTWWPPF--RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-- 329 (923)
T ss_pred cCceEEEcc-HHHHHHHHHHHHHhCcce--EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--
Confidence 368999999 567899999999998855 66667665542110 111223457999999876532
Q ss_pred cCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch-hhHHHHH-------------
Q 047490 84 DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK-AVQKLVD------------- 149 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~-~~~~~~~------------- 149 (323)
...+.-..|+++|+||.|++-+. .......+..++.. +.|.+|+||.. .+.++..
T Consensus 330 ~d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~T~---------~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~ 398 (923)
T KOG0387|consen 330 GDDLLGILWDYVILDEGHRIRNP--NSKISLACKKIRTV---------HRIILSGTPIQNNLTELWSLFDFVFPGKLGTL 398 (923)
T ss_pred CcccccccccEEEecCcccccCC--ccHHHHHHHhcccc---------ceEEeeCccccchHHHHHHHhhhccCCcccch
Confidence 22344567999999999998653 35556666666654 78888888753 2222110
Q ss_pred ----------------------------------------------------------------------------HH--
Q 047490 150 ----------------------------------------------------------------------------EE-- 151 (323)
Q Consensus 150 ----------------------------------------------------------------------------~~-- 151 (323)
++
T Consensus 399 ~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~ 478 (923)
T KOG0387|consen 399 PVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLN 478 (923)
T ss_pred HHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhh
Confidence 00
Q ss_pred ------------------------hcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecC
Q 047490 152 ------------------------CQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNT 207 (323)
Q Consensus 152 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~ 207 (323)
|.++.-+.... ... .....+........|+..+..++..+..+|.++|+|.++
T Consensus 479 s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~--~~~-~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs 555 (923)
T KOG0387|consen 479 SSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD--EDE-KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQS 555 (923)
T ss_pred hHHHHHHHcCCccceechHHHHhhcCCcccccCcc--ccc-ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhH
Confidence 00000000000 000 000000001112358889999998888899999999999
Q ss_pred cccHHHHHHHHh-hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhh
Q 047490 208 LNSSRAVDHFLN-ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLH 285 (323)
Q Consensus 208 ~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q 285 (323)
+....-+-.+|. ..++...-+.|..+...|..++++|++++...-+|++|.+.+-|+|+ .++.||+||+.||+.+-.|
T Consensus 556 ~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~Q 635 (923)
T KOG0387|consen 556 RQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQ 635 (923)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchH
Confidence 999999999998 68999999999999999999999999855555678999999999999 9999999999999999999
Q ss_pred hhcccccCCCcce--EEEEeeCCcH
Q 047490 286 RTGRTARMGAKGK--VTSLVAKKDV 308 (323)
Q Consensus 286 ~~GR~~R~~~~g~--~~~~~~~~~~ 308 (323)
+.-|+.|.|++.. +|-+++....
T Consensus 636 AreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 636 ARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred HHHHHHhhcCccceEEEEEecCCcH
Confidence 9999999997554 5555555433
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=6.9e-21 Score=178.20 Aligned_cols=287 Identities=19% Similarity=0.227 Sum_probs=183.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc--------cccc-C-----CCCCEEEeChHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ--------EDSL-N-----NPIDMVVGTPGRILQ 80 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~-----~~~~Iii~Tp~~l~~ 80 (323)
....+++++.|+++++++++++++.+....+......++....... .... . .-..+.++||.....
T Consensus 244 ~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~ 323 (733)
T COG1203 244 KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILI 323 (733)
T ss_pred cccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhh
Confidence 3578999999999999999999999887654443322332221100 0000 0 012455556554444
Q ss_pred HHHcCC-CC-C--CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce
Q 047490 81 HIEDGN-MV-Y--GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA 156 (323)
Q Consensus 81 ~~~~~~-~~-~--~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~ 156 (323)
...... .. + =....+|+||+|.+........+..++..+... +.+++++|||+|+...+.+........
T Consensus 324 ~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~-------g~~ill~SATlP~~~~~~l~~~~~~~~ 396 (733)
T COG1203 324 FSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA-------GVPVLLMSATLPPFLKEKLKKALGKGR 396 (733)
T ss_pred hhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhC-------CCCEEEEecCCCHHHHHHHHHHHhccc
Confidence 211111 11 1 124689999999887654333344444444332 348999999999999988887765543
Q ss_pred eeeccccccccccceeeEEeccCChh-HH---HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCC
Q 047490 157 HLRTSTLHKKIASARHDFIKLSGSEN-KL---EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-k~---~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 232 (323)
....... ..+.............+ +. ...........+.+.+++|.|||+..|.++++.|+..+..+..+||.+
T Consensus 397 ~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf 474 (733)
T COG1203 397 EVVENAK--FCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRF 474 (733)
T ss_pred ceecccc--ccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 3222111 00011111111110000 11 134444444556789999999999999999999998877899999999
Q ss_pred CHHHHHHHHHhccc--cCCCCCEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhcccccCC--CcceEEEEeeCCcH
Q 047490 233 PAQERVENLNKFKN--EDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 233 ~~~~r~~~~~~f~~--~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~ 308 (323)
...+|.+.+++..+ ..+...|+|||++.+.|+|++++.+|--- ...+..+||+||++|.| ..|.++++......
T Consensus 475 ~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 475 TLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred chhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 99999888775442 12556699999999999999999777644 44777899999999999 57788877775544
Q ss_pred HHHH
Q 047490 309 LLAD 312 (323)
Q Consensus 309 ~~~~ 312 (323)
....
T Consensus 553 ~~~~ 556 (733)
T COG1203 553 PYLK 556 (733)
T ss_pred Cchh
Confidence 3333
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.3e-19 Score=165.16 Aligned_cols=127 Identities=24% Similarity=0.294 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|..++.+.+.+....++|+||-|.+....+.++..|...+++..+++..-...+-.-+-+.-+. |. |.|||+.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~--VTIATNm 625 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GA--VTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--Cc--EEEeecc
Confidence 3568888888777766789999999999999999999999999998888887554444444444443 55 8999999
Q ss_pred cccccCCCCC---------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 260 AARGLDLDVD---------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 260 ~~~Gid~~~~---------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
+++|.|+.+. +||....|.|.+...|..||+||.|.+|.+..+++..|.-.
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~ 685 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLM 685 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHH
Confidence 9999998322 79999999999999999999999999999999999876543
No 104
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=163.68 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=87.5
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
-+|-+++..+....+|++.|+++|++|+...+...+... -.+...+.|....+.... .-+|+|+|+-|+.+..++..
T Consensus 545 Y~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLls 622 (1330)
T KOG0949|consen 545 YAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLS 622 (1330)
T ss_pred HHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcC
Confidence 356667777788899999999999999999998877322 234444455443333222 22489999999999888766
Q ss_pred ---CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 85 ---GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 85 ---~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
...+.+.++++|+||+|.+....-+--...++.-+ +.+++++|||..+
T Consensus 623 pp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li----------~CP~L~LSATigN 673 (1330)
T KOG0949|consen 623 PPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI----------PCPFLVLSATIGN 673 (1330)
T ss_pred chhhhhhhhcceEEEechhhhccccccchHHHHHHHhc----------CCCeeEEecccCC
Confidence 34557889999999999987654332233333222 2389999999864
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.8e-19 Score=164.49 Aligned_cols=272 Identities=16% Similarity=0.233 Sum_probs=181.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+..+.+.-|.+--|..+++++.+.... +++...|-... .......+..|-++|.+.|.+.+.... .++.+++||
T Consensus 94 ~g~I~~tQPRRlAArsvA~RvAeel~~---~~G~~VGY~iR--fe~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vI 167 (845)
T COG1643 94 AGKIGCTQPRRLAARSVAERVAEELGE---KLGETVGYSIR--FESKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVI 167 (845)
T ss_pred CCeEEecCchHHHHHHHHHHHHHHhCC---CcCceeeEEEE--eeccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEE
Confidence 457888889887777777777665433 22222221111 011123346899999999999888644 489999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||+|+ ..-...-++..++...+.. +.++++|.||||+..+... .++.+...+... .....+..+|..
T Consensus 168 iDEaHE-----RSl~tDilLgllk~~~~~r-r~DLKiIimSATld~~rfs---~~f~~apvi~i~---GR~fPVei~Y~~ 235 (845)
T COG1643 168 IDEAHE-----RSLNTDILLGLLKDLLARR-RDDLKLIIMSATLDAERFS---AYFGNAPVIEIE---GRTYPVEIRYLP 235 (845)
T ss_pred Ecchhh-----hhHHHHHHHHHHHHHHhhc-CCCceEEEEecccCHHHHH---HHcCCCCEEEec---CCccceEEEecC
Confidence 999994 3333333333333311111 1247999999999754332 333322222221 112222333323
Q ss_pred ccCChh-HHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 177 LSGSEN-KLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 177 ~~~~~~-k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
....+. -...+...+.... +..+.+|||.+...+.+..++.|++ ....+..+||.++.+++..+.+--.. |+
T Consensus 236 ~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~--~~ 313 (845)
T COG1643 236 EAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPG--GK 313 (845)
T ss_pred CCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCC--Cc
Confidence 332333 3344444443332 3568999999999999999999997 35788899999999999886666655 66
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.+|+++|+++++++.+ ++..||..|. |-|.+...||.||+||. .+|.||-+++..+..
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 7799999999999999 9999998765 33777889999999999 599999999975543
No 106
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=1e-19 Score=135.50 Aligned_cols=120 Identities=40% Similarity=0.693 Sum_probs=110.9
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
+.|...+.+.+....+.++++||||++...++.+++.|++.+.++..+||+++..++..+.+.|++ +...++++|+.+
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChh
Confidence 368888888888765567899999999999999999999888899999999999999999999999 889999999999
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEE
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 302 (323)
++|+|+ .+++||++++|++...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999 899999999999999999999999999998887653
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.82 E-value=1.7e-19 Score=165.47 Aligned_cols=135 Identities=27% Similarity=0.428 Sum_probs=124.1
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...++..+++.+......+.+++|||++.+.++.+++.|.+.++.+..+||+++..+|.++++.|+. |++.|+|||+.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcCh
Confidence 4457778888887776788999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCC-CCCEEEEcC-----CCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 260 AARGLDL-DVDHVIMFD-----FPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~-----~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+.+|+|+ ++++|++++ .|.+...|+|++||+||. ..|.++++.+..+....+.|.+.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999 999999987 799999999999999998 68999999999888888888776
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.2e-17 Score=146.74 Aligned_cols=268 Identities=18% Similarity=0.209 Sum_probs=173.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHh-ccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
.+-|--|.|--|.-++++..+- ....|-.++...--.+.. .....|.+.|-+.|++-+.... .++.+++||+
T Consensus 97 ~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIl 169 (674)
T KOG0922|consen 97 KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIIL 169 (674)
T ss_pred cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEE
Confidence 3777788887666666555443 222333333222111111 1235799999999988766543 4889999999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||||. +.-+..-++..++....+. .++++|++|||+.-+. +..++.+...+... .....+...|...
T Consensus 170 DEAHE-----Rsl~TDiLlGlLKki~~~R--~~LklIimSATlda~k---fS~yF~~a~i~~i~---GR~fPVei~y~~~ 236 (674)
T KOG0922|consen 170 DEAHE-----RSLHTDILLGLLKKILKKR--PDLKLIIMSATLDAEK---FSEYFNNAPILTIP---GRTFPVEILYLKE 236 (674)
T ss_pred echhh-----hhhHHHHHHHHHHHHHhcC--CCceEEEEeeeecHHH---HHHHhcCCceEeec---CCCCceeEEeccC
Confidence 99993 3333333333333332222 3579999999997332 22333332222221 1222233333332
Q ss_pred cCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhC----C----CeeEEecCCCCHHHHHHHHHhccccC
Q 047490 178 SGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNEN----Q----ISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
+..+.-...+..+++-+. ++++-+|||.+..++.+.+++.|.+. + .-+..+||.++.+++..+.+--..
T Consensus 237 p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~-- 314 (674)
T KOG0922|consen 237 PTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPP-- 314 (674)
T ss_pred CchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCC--
Confidence 322322233333332221 46679999999999999999988764 1 124579999999998877665555
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|..+|+++|++++..+.+ .+..||..|. |-|...-.||.||+||.| +|+|+-+++..+..
T Consensus 315 g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 315 GKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred CcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 999999999999999999 9999998764 347778899999999994 99999999987664
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=3e-18 Score=154.12 Aligned_cols=292 Identities=16% Similarity=0.158 Sum_probs=197.6
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC-
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG- 85 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~- 85 (323)
+...+..-.|..+-+++|+..||.|-++++..++..+|+++..+.++.........+ .++|.++|...| +++++.+
T Consensus 110 l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm 187 (764)
T PRK12326 110 IAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQL 187 (764)
T ss_pred HHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhh
Confidence 333344455778999999999999999999999999999999998876655444434 369999999887 4444443
Q ss_pred -----CCCCCCCcEEeecchhhhhcCC---------------ChhhHHHHHhhhcc------------------------
Q 047490 86 -----NMVYGDIKYLVLDEADTMFDRG---------------FGPDIRKFLVPLKN------------------------ 121 (323)
Q Consensus 86 -----~~~~~~~~~vIiDE~h~~~~~~---------------~~~~~~~i~~~~~~------------------------ 121 (323)
....+.+.+.|+||+|.++=.+ ....+..+...+..
T Consensus 188 ~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e 267 (764)
T PRK12326 188 VTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVE 267 (764)
T ss_pred ccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHH
Confidence 2235668899999999954100 00001111111100
Q ss_pred ---------------------------ccCCCCCCC--------------------------------------------
Q 047490 122 ---------------------------RASKPNGQG-------------------------------------------- 130 (323)
Q Consensus 122 ---------------------------~~~~~~~~~-------------------------------------------- 130 (323)
......+.+
T Consensus 268 ~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~ 347 (764)
T PRK12326 268 KALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETG 347 (764)
T ss_pred HHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCc
Confidence 000000000
Q ss_pred ---------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCC
Q 047490 131 ---------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195 (323)
Q Consensus 131 ---------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 195 (323)
.++.+||+|......++.+-+......++.-............| .....|..++.+.+.+..
T Consensus 348 ~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy---~t~~~k~~Aii~ei~~~~ 424 (764)
T PRK12326 348 EVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVY---ATAAEKNDAIVEHIAEVH 424 (764)
T ss_pred eeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceE---eCHHHHHHHHHHHHHHHH
Confidence 15677777776555544443333333222211111111111111 224668888888887766
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC------
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD------ 269 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~------ 269 (323)
..|.|+||.|.+....+.+.+.|.+.+++..++++.-...+-+-+-+.-+. |. |.|||+.+++|.|+.+.
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--ga--VTIATNMAGRGTDIkLg~~~~~~ 500 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GA--VTVSTQMAGRGTDIRLGGSDEAD 500 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--Cc--EEEEecCCCCccCeecCCCcccc
Confidence 789999999999999999999999999999999887655554444444444 55 89999999999998332
Q ss_pred ----------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 270 ----------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 270 ----------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+||-...+.|.+.-.|..||+||.|.+|.+..+++..|.
T Consensus 501 ~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 501 RDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred hHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 799999999999999999999999999999999997665
No 110
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.78 E-value=3.6e-17 Score=148.60 Aligned_cols=283 Identities=16% Similarity=0.139 Sum_probs=175.9
Q ss_pred hhccccCCCC-----ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC--CccccccC-----CCCCEEEeCh
Q 047490 8 MLGVLMKPRR-----PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL--RPQEDSLN-----NPIDMVVGTP 75 (323)
Q Consensus 8 ~~~~~~~~~~-----~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~Iii~Tp 75 (323)
|...+...++ .+.||++| ..|+..|.+++.+|.....+....+++.... ......+. -...|++.++
T Consensus 284 lwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sy 362 (776)
T KOG0390|consen 284 IWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISY 362 (776)
T ss_pred HHHHHHhCcCccccccccEEEcc-HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccH
Confidence 4445566677 89999999 6788999999999987666777777777553 00111111 1135889999
Q ss_pred HHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch-hhHHHHH-----
Q 047490 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK-AVQKLVD----- 149 (323)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~-~~~~~~~----- 149 (323)
+.+.+.+.. +....++++|+||.|++-+ -...+...+..+... +.|++|+||-. ...+...
T Consensus 363 e~~~~~~~~--il~~~~glLVcDEGHrlkN--~~s~~~kaL~~l~t~---------rRVLLSGTp~QNdl~EyFnlL~fv 429 (776)
T KOG0390|consen 363 ETASDYCRK--ILLIRPGLLVCDEGHRLKN--SDSLTLKALSSLKTP---------RRVLLTGTPIQNDLKEYFNLLDFV 429 (776)
T ss_pred HHHHHHHHH--HhcCCCCeEEECCCCCccc--hhhHHHHHHHhcCCC---------ceEEeeCCcccccHHHHHHHHhhc
Confidence 999866654 4466889999999998754 335566666666544 78999999843 1111110
Q ss_pred ------------------------------------------HHhcCceeeecc-ccccccccceeeEEeccCC------
Q 047490 150 ------------------------------------------EECQGIAHLRTS-TLHKKIASARHDFIKLSGS------ 180 (323)
Q Consensus 150 ------------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------ 180 (323)
.....+...+.. ......|....+.+.+...
T Consensus 430 rP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~ 509 (776)
T KOG0390|consen 430 RPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKEL 509 (776)
T ss_pred ChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHH
Confidence 000000000000 0011111111221111111
Q ss_pred -------------------------------------------------------------------hhHHHHHHHHhcc
Q 047490 181 -------------------------------------------------------------------ENKLEALLQVLEP 193 (323)
Q Consensus 181 -------------------------------------------------------------------~~k~~~l~~~l~~ 193 (323)
..|+..|..++..
T Consensus 510 ~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~ 589 (776)
T KOG0390|consen 510 YKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV 589 (776)
T ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH
Confidence 1122333333211
Q ss_pred CCCCCCeEEEEecCcccHHHH-HHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC-EEEEecccccccCC-CCCE
Q 047490 194 SLSKGNKVMVFCNTLNSSRAV-DHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP-TLVCTDLAARGLDL-DVDH 270 (323)
Q Consensus 194 ~~~~~~~~lvf~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~-ilv~t~~~~~Gid~-~~~~ 270 (323)
..+...--.+++.+.+....+ .+.++-.|..+..+||.|+..+|+.+++.|+.+++.-. .|.++.+++.|+|+ .++.
T Consensus 590 ~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 590 IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 111111112333333333333 33344459999999999999999999999999766634 56667899999999 9999
Q ss_pred EEEcCCCCCchhhhhhhcccccCCCcceEEEEee
Q 047490 271 VIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 271 vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
||.+|++||++.-.|+++|+.|.|++-.|+++--
T Consensus 670 lil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 670 LILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred EEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999999999999999998776655543
No 111
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.78 E-value=1.2e-18 Score=161.48 Aligned_cols=111 Identities=26% Similarity=0.432 Sum_probs=101.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC-CCCCEEEEecccccccCC-CCCEEEE
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED-GDCPTLVCTDLAARGLDL-DVDHVIM 273 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-g~~~ilv~t~~~~~Gid~-~~~~vi~ 273 (323)
+.|.++|||.+-+....-|+++|...+++.--+.|.+..+.|+..++.|+.++ ..+.+|+||.+.+.|||+ .+++||+
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 57789999999999999999999999999999999999999999999999853 456789999999999999 9999999
Q ss_pred cCCCCCchhhhhhhcccccCCCcc--eEEEEeeCC
Q 047490 274 FDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKK 306 (323)
Q Consensus 274 ~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~ 306 (323)
||..||+..-.|+..||+|.|++. .+|-|++..
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999999755 567777764
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.1e-17 Score=150.89 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=187.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
|..+|+|+|-.+|..|+.+.++..+. .++..++++....+....| .+...|+|+|-..++ ..++++
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~L 314 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNL 314 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------Cchhhc
Confidence 68999999999999999999999875 5888888887765543333 467899999943332 347899
Q ss_pred cEEeecchhhhhc---CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFD---RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
.+||+||=|--.- .+..-+.+.+....... .+.++|+-||||+-+........ .+..+...........
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~------~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~ 386 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK------ENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARL 386 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHHHH------hCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCC
Confidence 9999999996432 12233444443322221 13489999999986665544322 2223332222222222
Q ss_pred ceeeEEeccCChhHH-----HHHHHHhccCCCCCCeEEEEecCcccHH--------------------------------
Q 047490 170 ARHDFIKLSGSENKL-----EALLQVLEPSLSKGNKVMVFCNTLNSSR-------------------------------- 212 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~lvf~~~~~~~~-------------------------------- 212 (323)
.....++......+. ..|++.+++.++.++++|+|.|.+..+-
T Consensus 387 p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH 466 (730)
T COG1198 387 PRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCH 466 (730)
T ss_pred CcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeC
Confidence 333344444333332 6778888888889999999999966432
Q ss_pred ----------------------------HHHHHHhhC--CCeeEEecCCCCH--HHHHHHHHhccccCCCCCEEEEeccc
Q 047490 213 ----------------------------AVDHFLNEN--QISTVNYHGEVPA--QERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 213 ----------------------------~l~~~l~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
++.+.|+.. +.++..+.++... ..-+..+..|.+ |+.+|||.|+.+
T Consensus 467 ~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~--ge~dILiGTQmi 544 (730)
T COG1198 467 YCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN--GEADILIGTQMI 544 (730)
T ss_pred CCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC--CCCCeeecchhh
Confidence 222222222 3344445555443 234677999999 999999999999
Q ss_pred ccccCC-CCCEEEEcCCCC------------CchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 261 ARGLDL-DVDHVIMFDFPL------------NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
..|.|+ +++.|...+... ....+.|-.||+||.+.+|.+++-.-.+|...++.+.
T Consensus 545 aKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 545 AKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred hcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 999999 999887765432 3444679999999999999999888888876665543
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.78 E-value=6.3e-17 Score=148.16 Aligned_cols=246 Identities=18% Similarity=0.289 Sum_probs=161.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccc-eeEEE-eecCccCCccc----cccCCCCCEEEeChHHHHHHHHcCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTM-VSGGGRLRPQE----DSLNNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~----~~~~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
-..++.++++++||..|+.|+.+.++++....+ ..+.. .++........ +...++++|+|+|.+-+.+-+..-
T Consensus 121 ~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L- 199 (1187)
T COG1110 121 LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL- 199 (1187)
T ss_pred HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh-
Confidence 344568999999999999999999999987765 44444 34433332222 223567999999988776555432
Q ss_pred CCCCCCcEEeecchhhhhcCC-----------Chhh-------HHHHHhhhc----------------cccCCCCCCCce
Q 047490 87 MVYGDIKYLVLDEADTMFDRG-----------FGPD-------IRKFLVPLK----------------NRASKPNGQGFQ 132 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~-----------~~~~-------~~~i~~~~~----------------~~~~~~~~~~~~ 132 (323)
..-++++|++|++|.++..+ |... +..+...+. ..........=+
T Consensus 200 -~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~ 278 (1187)
T COG1110 200 -SKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGI 278 (1187)
T ss_pred -cccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCce
Confidence 12478999999999976432 2221 001111111 000000111238
Q ss_pred EEEEEeecchhh-HHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecC---c
Q 047490 133 TVLVSATMTKAV-QKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNT---L 208 (323)
Q Consensus 133 ~i~~sat~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~---~ 208 (323)
+++.|||..+.- .-.+-+.+.++.. +.......++...+... . -.+.+.++++.. |.-.|||++. +
T Consensus 279 LvvsSATg~~rg~R~~LfReLlgFev---G~~~~~LRNIvD~y~~~-~---~~e~~~elvk~l---G~GgLIfV~~d~G~ 348 (1187)
T COG1110 279 LVVSSATGKPRGSRLKLFRELLGFEV---GSGGEGLRNIVDIYVES-E---SLEKVVELVKKL---GDGGLIFVPIDYGR 348 (1187)
T ss_pred EEEeeccCCCCCchHHHHHHHhCCcc---CccchhhhheeeeeccC-c---cHHHHHHHHHHh---CCCeEEEEEcHHhH
Confidence 999999985433 3334444444432 22334445555555444 3 334444444432 3366999999 9
Q ss_pred ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec----ccccccCC--CCCEEEEcCCC
Q 047490 209 NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD----LAARGLDL--DVDHVIMFDFP 277 (323)
Q Consensus 209 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~----~~~~Gid~--~~~~vi~~~~p 277 (323)
+.++++++.|+..|+.+..+|+. .++.++.|.+ |++++||++. .+.+|+|+ .+..+|++|.|
T Consensus 349 e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~--GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 349 EKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE--GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc--CceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99999999999999999999984 2678999999 9999999864 78999999 59999999987
No 114
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.2e-18 Score=117.06 Aligned_cols=77 Identities=39% Similarity=0.764 Sum_probs=73.9
Q ss_pred HHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 216 HFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
++|+..++.+..+||++++.+|..+++.|+. +...+||||+.+++|+|+ .+++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS--GEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT--TSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc--cCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3678889999999999999999999999999 888999999999999999 9999999999999999999999999986
No 115
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.3e-17 Score=151.94 Aligned_cols=291 Identities=15% Similarity=0.167 Sum_probs=197.2
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC--
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN-- 86 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~-- 86 (323)
..+..-.|..|-+++|+..||.|-++++..++..+|+++.++.++.........+. ++|+++|...| +++++.+.
T Consensus 116 a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 116 VYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred HHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhcccee
Confidence 33444557789999999999999999999999999999999988766555444444 79999999887 55555432
Q ss_pred ----CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhccc------------------------
Q 047490 87 ----MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNR------------------------ 122 (323)
Q Consensus 87 ----~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~------------------------ 122 (323)
...+.+.++|+||+|.++=++ ....+..++..+...
T Consensus 194 ~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~ 273 (913)
T PRK13103 194 SLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVE 273 (913)
T ss_pred chhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeee
Confidence 234789999999999954100 000111111111000
Q ss_pred ------------c---------CCC-CCCC--------------------------------------------------
Q 047490 123 ------------A---------SKP-NGQG-------------------------------------------------- 130 (323)
Q Consensus 123 ------------~---------~~~-~~~~-------------------------------------------------- 130 (323)
. ... ...+
T Consensus 274 LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGL 353 (913)
T PRK13103 274 LNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGL 353 (913)
T ss_pred echHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHH
Confidence 0 000 0000
Q ss_pred -------------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccC
Q 047490 131 -------------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179 (323)
Q Consensus 131 -------------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (323)
.++.+||+|...+..++.+-+......++.-.......... .+ ...
T Consensus 354 HQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d--~v-y~t 430 (913)
T PRK13103 354 HQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFND--LV-YLT 430 (913)
T ss_pred HHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCC--eE-EcC
Confidence 15566666665444444433333333322221111111111 12 223
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|..++.+-+......|+|+||-+.+....+.++..|+..+++..+++......+-+-+.+.-+. |. |.|||+.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--Ga--VTIATNM 506 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GA--LTIATNM 506 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--Cc--EEEeccC
Confidence 4678899988888777889999999999999999999999999888777776554454444444443 54 8999999
Q ss_pred cccccCCCCC--------------------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEE
Q 047490 260 AARGLDLDVD--------------------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301 (323)
Q Consensus 260 ~~~Gid~~~~--------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 301 (323)
+++|.|+.+. +||-...+.|.+.-.|..||+||.|.+|.+..
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 9999998321 78888999999999999999999999999999
Q ss_pred EeeCCcHH
Q 047490 302 LVAKKDVL 309 (323)
Q Consensus 302 ~~~~~~~~ 309 (323)
+++..|.-
T Consensus 587 ~lSlED~L 594 (913)
T PRK13103 587 YLSLEDSL 594 (913)
T ss_pred EEEcCcHH
Confidence 99986653
No 116
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.76 E-value=1.1e-17 Score=134.24 Aligned_cols=134 Identities=39% Similarity=0.600 Sum_probs=113.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++++++|++|+++|+.|+.+.++.+....++.+..++|+.........+..+++|+|+||+.+..++.+....++++++
T Consensus 67 ~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~ 146 (203)
T cd00268 67 KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKY 146 (203)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCE
Confidence 36789999999999999999999999887788888888887765555555567899999999999999887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA 156 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~ 156 (323)
+|+||+|.+.+.++...+..+...+.. +.+++++|||+++.........+..+.
T Consensus 147 lIvDE~h~~~~~~~~~~~~~~~~~l~~--------~~~~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 147 LVLDEADRMLDMGFEDQIREILKLLPK--------DRQTLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred EEEeChHHhhccChHHHHHHHHHhCCc--------ccEEEEEeccCCHHHHHHHHHHCCCCE
Confidence 999999999887788888888877654 339999999999888887777766543
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=2.2e-17 Score=148.58 Aligned_cols=258 Identities=13% Similarity=0.144 Sum_probs=163.3
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-----
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG----- 85 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~----- 85 (323)
++....-+++|+|+.+++|+.|.+..+..+.+.. -....+.+-.. ...++|.++|++++.......
T Consensus 209 L~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~ 279 (875)
T COG4096 209 LIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYR 279 (875)
T ss_pred HHhcchhheeeEEechHHHHHHHHHHHHHhCCCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccc
Confidence 3445666899999999999999999999998753 22222222211 114799999999998877654
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHh-cCceeeeccccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC-QGIAHLRTSTLH 164 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~-~~~~~~~~~~~~ 164 (323)
.+....+++||+||||+- .......|+.++... .+++||||........-.+. ..+.........
T Consensus 280 ~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA~----------~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeA 345 (875)
T COG4096 280 RFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDAA----------TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEA 345 (875)
T ss_pred cCCCCceeEEEechhhhh----HHhhhHHHHHHHHHH----------HHhhccCcccccccccccccCCCcceeecHHHH
Confidence 244566999999999974 445556888888764 45569999764443332222 111111000000
Q ss_pred -----------------ccccc----------------c--eeeEEeccC------ChhHHH----HHHHHhcc--CCCC
Q 047490 165 -----------------KKIAS----------------A--RHDFIKLSG------SENKLE----ALLQVLEP--SLSK 197 (323)
Q Consensus 165 -----------------~~~~~----------------~--~~~~~~~~~------~~~k~~----~l~~~l~~--~~~~ 197 (323)
....+ + ..+.....+ -....+ .+.+.+.. .-..
T Consensus 346 V~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~ 425 (875)
T COG4096 346 VEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDE 425 (875)
T ss_pred hhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCc
Confidence 00000 0 000000000 001223 33344443 2122
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEE
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHV 271 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~v 271 (323)
.+||||||.+..+|+.+.+.|.+. +--+..+.|+-.. . +..+..|...+.-.+|.++.+.+.+|+|+ .|.++
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~-~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ-A-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh-h-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 579999999999999999998764 3345556665432 2 33345554433455688999999999999 99999
Q ss_pred EEcCCCCCchhhhhhhcccccC
Q 047490 272 IMFDFPLNSIDYLHRTGRTARM 293 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~ 293 (323)
+++-.-.|...|.|++||+.|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999994
No 118
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.74 E-value=2.7e-17 Score=146.51 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=109.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
|...|..+|-.....|.++|||.+......-+-..|...++....+.|...-..|+.++.+|..+..-.-+|++|.+.+.
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~ 841 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGF 841 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcc
Confidence 66667777766666889999999999988888888999999999999999999999999999985555567899999999
Q ss_pred ccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCc--ceEEEEeeCCcH
Q 047490 263 GLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GKVTSLVAKKDV 308 (323)
Q Consensus 263 Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~ 308 (323)
|||+ .+++||++|...|+.+-.|+-.|++|.|+. -.++-++++...
T Consensus 842 GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 842 GINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred eecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 9999 999999999999999999999999999964 457777776543
No 119
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.73 E-value=7.6e-17 Score=149.37 Aligned_cols=270 Identities=20% Similarity=0.309 Sum_probs=178.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecc
Q 047490 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDE 99 (323)
Q Consensus 20 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE 99 (323)
+||+|| ..|+.-|..++.+|++. +++....|+-......+...++.+|||++++.+.+.+.. +.-.+|.|+|+||
T Consensus 1034 SLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDE 1108 (1549)
T KOG0392|consen 1034 SLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDE 1108 (1549)
T ss_pred eEEECC-chhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecC
Confidence 899999 56899999999999986 566666666443333333344579999999988654432 2234688999999
Q ss_pred hhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHH-----------------------------
Q 047490 100 ADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVD----------------------------- 149 (323)
Q Consensus 100 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~----------------------------- 149 (323)
-|.+-+ -...+...+..+... +.+.+|+||..+ ..+...
T Consensus 1109 GHVikN--~ktkl~kavkqL~a~---------hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd 1177 (1549)
T KOG0392|consen 1109 GHVIKN--SKTKLTKAVKQLRAN---------HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRD 1177 (1549)
T ss_pred cceecc--hHHHHHHHHHHHhhc---------ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcC
Confidence 998755 345666667777654 678899998531 111100
Q ss_pred --------------------------------------------H---------------HhcC---ceeeecccccccc
Q 047490 150 --------------------------------------------E---------------ECQG---IAHLRTSTLHKKI 167 (323)
Q Consensus 150 --------------------------------------------~---------------~~~~---~~~~~~~~~~~~~ 167 (323)
. +... ......+......
T Consensus 1178 ~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~ 1257 (1549)
T KOG0392|consen 1178 PKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESL 1257 (1549)
T ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhcc
Confidence 0 0000 0000000000000
Q ss_pred c-cceeeE--------------Eecc-----------------------CChhHHHHHHHHhccCC-C------------
Q 047490 168 A-SARHDF--------------IKLS-----------------------GSENKLEALLQVLEPSL-S------------ 196 (323)
Q Consensus 168 ~-~~~~~~--------------~~~~-----------------------~~~~k~~~l~~~l~~~~-~------------ 196 (323)
. ...|.| ...+ ....|+.+|-++|.+.- .
T Consensus 1258 gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~ 1337 (1549)
T KOG0392|consen 1258 GTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSD 1337 (1549)
T ss_pred CcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcch
Confidence 0 000000 0000 12347777777765531 0
Q ss_pred -CCCeEEEEecCcccHHHHHHHHh-hCCCeeE--EecCCCCHHHHHHHHHhccccCCCCCEE-EEecccccccCC-CCCE
Q 047490 197 -KGNKVMVFCNTLNSSRAVDHFLN-ENQISTV--NYHGEVPAQERVENLNKFKNEDGDCPTL-VCTDLAARGLDL-DVDH 270 (323)
Q Consensus 197 -~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~--~~~~~~~~~~r~~~~~~f~~~~g~~~il-v~t~~~~~Gid~-~~~~ 270 (323)
.+.+++|||+-...+..+-+-|. ..-..+. .+.|..++.+|.++.++|+++ ..+++| ++|.+.+.|+|+ .+|+
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccccccCCCce
Confidence 24699999999999999877554 4445555 678999999999999999982 255655 667899999999 9999
Q ss_pred EEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 271 VIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 271 vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
||+++-.||+..-.|++.||+|.|++-. ++-+++.+
T Consensus 1417 VVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1417 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9999999999999999999999998765 55556654
No 120
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=2.1e-16 Score=144.35 Aligned_cols=289 Identities=15% Similarity=0.170 Sum_probs=191.9
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC----
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN---- 86 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~---- 86 (323)
+..-.|..|-|++...-||.-=++++..+...+|++++....+.......... .++|.++|...| +++++.+.
T Consensus 114 LnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~ 191 (925)
T PRK12903 114 LNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSK 191 (925)
T ss_pred HHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccH
Confidence 33444667888899999998889999999988999999888775555444444 379999999888 66666542
Q ss_pred --CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcccc-------------------------
Q 047490 87 --MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNRA------------------------- 123 (323)
Q Consensus 87 --~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~------------------------- 123 (323)
...+.+.+.|+||+|.++=.+ ....+..++..+....
T Consensus 192 ~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~ 271 (925)
T PRK12903 192 EEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFK 271 (925)
T ss_pred HHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcC
Confidence 235678899999999854100 0001111111111000
Q ss_pred -CCC-CCCC-----------------------------------------------------------------------
Q 047490 124 -SKP-NGQG----------------------------------------------------------------------- 130 (323)
Q Consensus 124 -~~~-~~~~----------------------------------------------------------------------- 130 (323)
.+. ...+
T Consensus 272 i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAs 351 (925)
T PRK12903 272 LKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLAT 351 (925)
T ss_pred CCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeee
Confidence 000 0000
Q ss_pred ----------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCe
Q 047490 131 ----------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNK 200 (323)
Q Consensus 131 ----------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 200 (323)
-++.+||+|...+..++.+-+......++.-........... + ......|..++.+.+.+....+.|
T Consensus 352 IT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~--i-y~t~~~K~~Aii~ei~~~~~~gqP 428 (925)
T PRK12903 352 ITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDS--I-FGTKHAKWKAVVKEVKRVHKKGQP 428 (925)
T ss_pred ehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCc--E-EEcHHHHHHHHHHHHHHHHhcCCC
Confidence 156666666654444444333333222222111111111111 1 122467888888877776678999
Q ss_pred EEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC---------EE
Q 047490 201 VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---------HV 271 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---------~v 271 (323)
+||.|.+...++.++..|...+++..+++..-...+-.-+.+.-+. |. |.|||+.+++|.|+.+. +|
T Consensus 429 VLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~~--Ga--VTIATNMAGRGTDI~Lg~~V~~~GGLhV 504 (925)
T PRK12903 429 ILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQK--GA--ITIATNMAGRGTDIKLSKEVLELGGLYV 504 (925)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCCC--Ce--EEEecccccCCcCccCchhHHHcCCcEE
Confidence 9999999999999999999999998888887554444333333332 44 89999999999999443 89
Q ss_pred EEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 272 IMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|....|.|.+.-.|..||+||.|.+|.+..+++..|.-
T Consensus 505 IgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 505 LGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred EecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 99999999999999999999999999999999977654
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.73 E-value=3.1e-16 Score=145.68 Aligned_cols=260 Identities=16% Similarity=0.198 Sum_probs=144.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcC--CCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDG--NMVY 89 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~--~~~~ 89 (323)
...+.+++|+|+|+.+|..|+.+.+..+.... . ....+...-...+ .....|+|+|.++|...+... ....
T Consensus 289 ~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~ 362 (667)
T TIGR00348 289 ELLKNPKVFFVVDRRELDYQLMKEFQSLQKDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPV 362 (667)
T ss_pred hhcCCCeEEEEECcHHHHHHHHHHHHhhCCCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCC
Confidence 34567899999999999999999999986421 0 0000111111112 223689999999998644332 1111
Q ss_pred CCC-cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc----Cceeeeccccc
Q 047490 90 GDI-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ----GIAHLRTSTLH 164 (323)
Q Consensus 90 ~~~-~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (323)
..- .+||+||||+.....+ ...+...++.. .++++||||............. .+.+... ...
T Consensus 363 ~~~~~lvIvDEaHrs~~~~~---~~~l~~~~p~a---------~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~-~~~ 429 (667)
T TIGR00348 363 DRKEVVVIFDEAHRSQYGEL---AKNLKKALKNA---------SFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYF-ITD 429 (667)
T ss_pred CCCCEEEEEEcCccccchHH---HHHHHhhCCCC---------cEEEEeCCCcccccccccccccCCCCCeEEEee-HHH
Confidence 111 2899999998654322 22222334332 7999999996421111101110 1111000 000
Q ss_pred cccccce-e-eEEe------c----------------cC----------------------ChhHHHHHHHHhccCC---
Q 047490 165 KKIASAR-H-DFIK------L----------------SG----------------------SENKLEALLQVLEPSL--- 195 (323)
Q Consensus 165 ~~~~~~~-~-~~~~------~----------------~~----------------------~~~k~~~l~~~l~~~~--- 195 (323)
....+.. . .|.. . +. .+..+..+.+.+.+++
T Consensus 430 AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~ 509 (667)
T TIGR00348 430 AIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKF 509 (667)
T ss_pred HhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHh
Confidence 0000000 0 0000 0 00 0001112222221111
Q ss_pred --CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHH---------------------HHHHHHHhcccc
Q 047490 196 --SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQ---------------------ERVENLNKFKNE 247 (323)
Q Consensus 196 --~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~~ 247 (323)
..+.+.+|+|.++.+|..+++.|.+. +.....+++..+.. ....++++|+.
T Consensus 510 ~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~- 588 (667)
T TIGR00348 510 KELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKK- 588 (667)
T ss_pred hhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcC-
Confidence 12479999999999999999888654 23344455543322 12468888976
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccC
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 293 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 293 (323)
++..+|+|+++.+.+|+|. .+++++. +-|-....+.|++||+.|.
T Consensus 589 ~~~~~ilIVvdmllTGFDaP~l~tLyl-dKplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 589 EENPKLLIVVDMLLTGFDAPILNTLYL-DKPLKYHGLLQAIARTNRI 634 (667)
T ss_pred CCCceEEEEEcccccccCCCccceEEE-eccccccHHHHHHHHhccc
Confidence 4678999999999999999 5665555 4455456689999999994
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.73 E-value=4.3e-17 Score=150.80 Aligned_cols=126 Identities=26% Similarity=0.396 Sum_probs=113.8
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
..++..+++.+......+.+++|||++...++.+++.|...++.+..+||+++..+|..+++.|+. |.+.|+|||+.+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc--CCceEEEEeCHH
Confidence 446677777777766778899999999999999999999999999999999999999999999998 999999999999
Q ss_pred ccccCC-CCCEEEEcCC-----CCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 261 ARGLDL-DVDHVIMFDF-----PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.+|+|+ ++++||+++. |.+...|.||+||+||. ..|.++++++..+..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~ 560 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDS 560 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHH
Confidence 999999 9999999875 78999999999999996 789999999964333
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=7.1e-17 Score=149.41 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=133.4
Q ss_pred eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccH
Q 047490 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211 (323)
Q Consensus 132 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~ 211 (323)
++.+||+|...+..++.+-+......++.-......... ..+. .....|..++.+.+......+.|+||||+++..+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~--d~vy-~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMD--DLVY-KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCC--CeEe-cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 688999999777766655544443333222111111111 1122 3345688999998876556789999999999999
Q ss_pred HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC--------EEEEcCCCCCchh
Q 047490 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD--------HVIMFDFPLNSID 282 (323)
Q Consensus 212 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~--------~vi~~~~p~s~~~ 282 (323)
+.++..|...+++...+|+ ...+|+..+..|.. +.-.|+|||+.+++|+|+ -.. +||.+..|.|.+.
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG--~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Ri 687 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG--QKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRI 687 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC--CCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHH
Confidence 9999999999999999997 57788999999997 777899999999999998 433 4588899999999
Q ss_pred hhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 283 YLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 283 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|.|+.||+||.|.+|.++.|++..|.-
T Consensus 688 d~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 688 DRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999999999999999987654
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.8e-16 Score=135.86 Aligned_cols=179 Identities=24% Similarity=0.311 Sum_probs=142.8
Q ss_pred ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCccc
Q 047490 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNS 210 (323)
Q Consensus 131 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~ 210 (323)
.|.|++||||.+...+... ........ .+.+...-.+.+.+....++.|+.-+......+.+++|-+=|.+.
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiI-----RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQII-----RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEee-----cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 4899999999765443221 11111111 111222222334455667888888887777788999999999999
Q ss_pred HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCC-----CCCchhhh
Q 047490 211 SRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF-----PLNSIDYL 284 (323)
Q Consensus 211 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~-----p~s~~~~~ 284 (323)
|+.+.+.|.+.|+++.++|++...-+|.+++.+.+. |.++|||+.+.+.+|+|+ .+..|.++|. ..|....+
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 999999999999999999999999999999999999 999999999999999999 8999999875 45899999
Q ss_pred hhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 285 HRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 285 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|-+||+.|. -.|.++.+...-..++.+.|.+--++
T Consensus 537 QtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchhhhHHHHHHHHHHHHH
Confidence 999999998 58999999998777777777765443
No 125
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.71 E-value=5.6e-17 Score=126.19 Aligned_cols=132 Identities=29% Similarity=0.496 Sum_probs=104.8
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC-ccccccCCCCCEEEeChHHHHHHHHcCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR-PQEDSLNNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
++..+.+.+..++++++|+++|+.|+.+.++.++...++++..++++.... .....+..+++|+|+||++|...+....
T Consensus 35 ~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~ 114 (169)
T PF00270_consen 35 ALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK 114 (169)
T ss_dssp HHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS
T ss_pred HHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc
Confidence 344444445579999999999999999999999988778899998887644 3333345568999999999999998865
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
..+.+++++|+||+|.+..+.+...+..++..+.... +.+++++|||++...+
T Consensus 115 ~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~------~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 115 INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK------NIQIILLSATLPSNVE 167 (169)
T ss_dssp STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT------TSEEEEEESSSTHHHH
T ss_pred cccccceeeccCcccccccccHHHHHHHHHHHhcCCC------CCcEEEEeeCCChhHh
Confidence 5677799999999999998777788888877764431 3599999999985443
No 126
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.71 E-value=1.7e-14 Score=124.70 Aligned_cols=297 Identities=20% Similarity=0.289 Sum_probs=212.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcccc-ce----eEEEeec---------------CccCCccccc-------------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHA-RF----RSTMVSG---------------GGRLRPQEDS------------- 63 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~----~~~~~~~---------------~~~~~~~~~~------------- 63 (323)
.|+||||+|++..|-++.+.+.++.+.. .. +...-+| +....+....
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 4999999999999999999999988762 10 0000011 0000000000
Q ss_pred --------c---CCCCCEEEeChHHHHHHHHc------CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCC
Q 047490 64 --------L---NNPIDMVVGTPGRILQHIED------GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126 (323)
Q Consensus 64 --------~---~~~~~Iii~Tp~~l~~~~~~------~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~ 126 (323)
+ ..++|||||+|=-|...+.. ..-+++++.++|+|.+|.+.-+. .+++..++..+.....+.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCC
Confidence 0 12369999999988877764 23458999999999999987654 577778877776655444
Q ss_pred CCCC----------------ceEEEEEeecchhhHHHHHHHhcCcee---eec-----cccccccccceeeEEeccCC--
Q 047490 127 NGQG----------------FQTVLVSATMTKAVQKLVDEECQGIAH---LRT-----STLHKKIASARHDFIKLSGS-- 180 (323)
Q Consensus 127 ~~~~----------------~~~i~~sat~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~-- 180 (323)
.+++ .|.|++|+...++......+.+.+..- +.. +........+.+.|..++..
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 4433 599999999999999988886655421 111 11233455666777665432
Q ss_pred ----hhHHHHH----HHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 181 ----ENKLEAL----LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 181 ----~~k~~~l----~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
+.+.+-+ +..+.. .....++|||+++--.--.+...|++.+.....+|...+..+.......|.. |+.+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~--G~~~ 352 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH--GRKP 352 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc--CCce
Confidence 2233333 333331 2355799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccc--cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCC------cceEEEEeeCCcHHHHHHHHHH
Q 047490 253 TLVCTDLAA--RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA------KGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 253 ilv~t~~~~--~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+|+.|.-+- .-..+ ++.+||+|++|..+.-|...++-.+.... ...|.++++.-|...+++|.-.
T Consensus 353 iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 353 ILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 999997433 23457 89999999999999988877765554432 5789999999999988888643
No 127
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=6e-17 Score=139.71 Aligned_cols=302 Identities=10% Similarity=0.063 Sum_probs=195.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccc-e--eEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC----CC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHAR-F--RSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG----NM 87 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~----~~ 87 (323)
.+....++..|+.+++....+-+.-...... . -++-.+.+............+.+++++.|.........+ ..
T Consensus 329 ~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~ 408 (1034)
T KOG4150|consen 329 CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNV 408 (1034)
T ss_pred CcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhcccccc
Confidence 3445677888888887654432221111100 0 111222222222223334556899999998875544332 23
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCC-CCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP-NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK 166 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
++-...++++||+|..... ++......++.+...+.-. ...+.+++-.++|+...++-..+-. +...+........
T Consensus 409 ~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~--~~~E~~Li~~DGS 485 (1034)
T KOG4150|consen 409 PVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELA--NLSELELVTIDGS 485 (1034)
T ss_pred HHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhc--CCcceEEEEecCC
Confidence 3334578899999976542 4555444444443322111 1235799999999977665443332 2333333333334
Q ss_pred cccceeeEEeccC--------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----C----CeeEEecC
Q 047490 167 IASARHDFIKLSG--------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----Q----ISTVNYHG 230 (323)
Q Consensus 167 ~~~~~~~~~~~~~--------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~----~~~~~~~~ 230 (323)
+....+...+-++ .++++....+++.+....+-++|-||++++.|+.+....++. + ..+.-|.|
T Consensus 486 Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRG 565 (1034)
T KOG4150|consen 486 PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRG 565 (1034)
T ss_pred CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC
Confidence 4455555555443 234666666666666667889999999999999887765542 1 13345789
Q ss_pred CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEE--eeCCc
Q 047490 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL--VAKKD 307 (323)
Q Consensus 231 ~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~~ 307 (323)
+...++|+.+..+.-- |++.-+|+|.+++.|||+ .++.|++.+.|.|...+.|..||+||+.+.+..+++ ..+.|
T Consensus 566 GY~A~DRRKIE~~~F~--G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 566 GYIAEDRRKIESDLFG--GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVD 643 (1034)
T ss_pred ccchhhHHHHHHHhhC--CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchh
Confidence 9999999999887776 999999999999999999 999999999999999999999999999877654444 44567
Q ss_pred HHHHHHHHHHHHhc
Q 047490 308 VLLADRIEEAIRKN 321 (323)
Q Consensus 308 ~~~~~~i~~~l~~~ 321 (323)
...+......++.+
T Consensus 644 Q~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 644 QYYMSHPDKLFGSP 657 (1034)
T ss_pred hHhhcCcHHHhCCC
Confidence 77777776666544
No 128
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.8e-15 Score=132.67 Aligned_cols=266 Identities=16% Similarity=0.165 Sum_probs=168.5
Q ss_pred CccEEEEcCCHHHHHHHHHHH-HHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVA-KSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++=+--|.+--|..++.+. ++++..+|-.++.----.++. ....-|=++|-+.|++-+... ..+.++.+|
T Consensus 310 gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcT------SekTvlKYMTDGmLlREfL~e-pdLasYSVi 382 (902)
T KOG0923|consen 310 GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCT------SEKTVLKYMTDGMLLREFLSE-PDLASYSVI 382 (902)
T ss_pred CceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEecccc------CcceeeeeecchhHHHHHhcc-ccccceeEE
Confidence 344666678777665554443 444433333332221111111 122467799999998776643 458899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||||. ..-+...++.-++... .. +.+++++..|||+.-.-. . .++.....+.. +.....+..+|.
T Consensus 383 iiDEAHE-----RTL~TDILfgLvKDIa-r~-RpdLKllIsSAT~DAekF--S-~fFDdapIF~i---PGRRyPVdi~Yt 449 (902)
T KOG0923|consen 383 IVDEAHE-----RTLHTDILFGLVKDIA-RF-RPDLKLLISSATMDAEKF--S-AFFDDAPIFRI---PGRRYPVDIFYT 449 (902)
T ss_pred Eeehhhh-----hhhhhhHHHHHHHHHH-hh-CCcceEEeeccccCHHHH--H-HhccCCcEEec---cCcccceeeecc
Confidence 9999994 2222222222222111 11 136699999999863332 2 22222211111 122223334444
Q ss_pred eccCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhC---------CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 176 KLSGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNEN---------QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
..+..+.-..++..++.-+. ++.+-+|||....++.+...+.|.+. .+-++.+|+.+|++.+..|.+---
T Consensus 450 ~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP 529 (902)
T KOG0923|consen 450 KAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTP 529 (902)
T ss_pred cCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCC
Confidence 44433333344444444333 35588999999999999888877652 456678999999999988877666
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
. |..+|++||+++++.+.+ ++..||.-|. |-|.+.-.||+||+||.| +|+|+-+++.
T Consensus 530 ~--gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 530 P--GARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred C--CceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 5 999999999999999999 9999998654 447777789999999996 9999999994
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.69 E-value=1.4e-15 Score=140.83 Aligned_cols=273 Identities=14% Similarity=0.155 Sum_probs=174.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
+.-++++--|.|--|-.++++..+-. +..+-.++........ ......+.+||.+.+++.+.. ...+.++..
T Consensus 218 ~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vth 290 (924)
T KOG0920|consen 218 AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTH 290 (924)
T ss_pred CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCce
Confidence 45568888899887777777766543 2222222222222111 112257999999999999887 556889999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc--------
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK-------- 166 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 166 (323)
+|+||+|.=.- -.+-+-.++..+.... .++++|+||||...+.... +..+...+.....-.+
T Consensus 291 iivDEVHER~i--~~DflLi~lk~lL~~~-----p~LkvILMSAT~dae~fs~---YF~~~pvi~i~grtfpV~~~fLED 360 (924)
T KOG0920|consen 291 IIVDEVHERSI--NTDFLLILLKDLLPRN-----PDLKVILMSATLDAELFSD---YFGGCPVITIPGRTFPVKEYFLED 360 (924)
T ss_pred eeeeeEEEccC--CcccHHHHHHHHhhhC-----CCceEEEeeeecchHHHHH---HhCCCceEeecCCCcchHHHHHHH
Confidence 99999995321 1111222222222221 3569999999987443332 2222111111000000
Q ss_pred --------------c--ccce------eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---
Q 047490 167 --------------I--ASAR------HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--- 221 (323)
Q Consensus 167 --------------~--~~~~------~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--- 221 (323)
. +... -.........+-+..++..+... +..+.+|||.+...+...+.+.|...
T Consensus 361 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f 439 (924)
T KOG0920|consen 361 ILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPF 439 (924)
T ss_pred HHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhcccc
Confidence 0 0000 00000001122344444444443 34679999999999999999998642
Q ss_pred ----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCC------------------C
Q 047490 222 ----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP------------------L 278 (323)
Q Consensus 222 ----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p------------------~ 278 (323)
..-+..+|+.|+..+++.+....-. |..+|+++|.+++..|.+ ++-+||..+.- -
T Consensus 440 ~~~~~~~ilplHs~~~s~eQ~~VF~~pp~--g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wv 517 (924)
T KOG0920|consen 440 ADSLKFAILPLHSSIPSEEQQAVFKRPPK--GTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWV 517 (924)
T ss_pred ccccceEEEeccccCChHHHHHhcCCCCC--CcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeec
Confidence 2456779999999999988877777 889999999999999999 99999987632 2
Q ss_pred CchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 279 NSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 279 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|.+.-.||.||+||. ..|.||.+++.....
T Consensus 518 SkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 518 SKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred cccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 666678999999999 799999999975443
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.68 E-value=7.8e-17 Score=145.10 Aligned_cols=292 Identities=17% Similarity=0.251 Sum_probs=166.7
Q ss_pred cchhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc------------------
Q 047490 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS------------------ 63 (323)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 63 (323)
|++.|++.+ .++|+|+|+.+|..|..+++.+-.. ..++...++++.......+.
T Consensus 198 LkisEala~-------~~iL~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il 269 (1518)
T COG4889 198 LKISEALAA-------ARILFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDIL 269 (1518)
T ss_pred HHHHHHHhh-------hheEeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHH
Confidence 445555554 7999999999999999777766543 35666667666543221110
Q ss_pred -------cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEE
Q 047490 64 -------LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136 (323)
Q Consensus 64 -------~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ 136 (323)
-..+--|+++|++++...-.....-+..+++||+||||+...--....-...+..+.. ...-+-.+.+.|
T Consensus 270 ~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs---~~niKa~kRlYm 346 (1518)
T COG4889 270 SEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHS---DQNIKAAKRLYM 346 (1518)
T ss_pred HHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecC---cchhHHHHhhhc
Confidence 0123459999999998876666667889999999999997532111110111111100 000001267889
Q ss_pred Eeecch---hhHHHHH-----------HH-------------------hcCceeeeccccccccccceeeEEeccCChhH
Q 047490 137 SATMTK---AVQKLVD-----------EE-------------------CQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183 (323)
Q Consensus 137 sat~~~---~~~~~~~-----------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 183 (323)
||||.- +...... .. +..+..+..........+..+....-+...-.
T Consensus 347 TATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~ 426 (1518)
T COG4889 347 TATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLA 426 (1518)
T ss_pred ccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccc
Confidence 999831 1111100 00 11111111111111111111111111111111
Q ss_pred HHHHHHHh-------ccCC------------CCCCeEEEEecCcccHHHHHHHHhh-------------CCCee--EEec
Q 047490 184 LEALLQVL-------EPSL------------SKGNKVMVFCNTLNSSRAVDHFLNE-------------NQIST--VNYH 229 (323)
Q Consensus 184 ~~~l~~~l-------~~~~------------~~~~~~lvf~~~~~~~~~l~~~l~~-------------~~~~~--~~~~ 229 (323)
.+..-.++ ++.. .+.++.|-||.+.++...+++.|.. .++.+ ....
T Consensus 427 ~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvD 506 (1518)
T COG4889 427 LDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVD 506 (1518)
T ss_pred hhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeeccc
Confidence 11111111 1100 0124678999999888877766643 23333 4456
Q ss_pred CCCCHHHHHHHHHhccc-cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC---CcceEEEEee
Q 047490 230 GEVPAQERVENLNKFKN-EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG---AKGKVTSLVA 304 (323)
Q Consensus 230 ~~~~~~~r~~~~~~f~~-~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~---~~g~~~~~~~ 304 (323)
|.|+..+|...+..-.. ++.+|+||-...++.+|+|+ .++.||++++-.+..+..|.+||+.|.. +.|.+|+-+.
T Consensus 507 GtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 507 GTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred ccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 89999998544433222 34789999999999999999 8999999999999999999999999965 3566666555
No 131
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=8.6e-15 Score=126.14 Aligned_cols=247 Identities=21% Similarity=0.293 Sum_probs=160.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
...++--|.+-||.++++++.+. |+.+..++|++....... .+.++.+-+|.|+.. .-..++..|+
T Consensus 216 ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAVi 281 (700)
T KOG0953|consen 216 KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVI 281 (700)
T ss_pred ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcccceEEEEEEee--------cCCceEEEEe
Confidence 45678889999999999999886 678888888754433222 223566777765332 1335789999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||++.|.+...+=.....+..+...- |=+.+ .+.....+...+...- .. -..++|-..
T Consensus 282 DEIQmm~Dp~RGwAWTrALLGl~AdE----------iHLCG--epsvldlV~~i~k~TG----d~------vev~~YeRl 339 (700)
T KOG0953|consen 282 DEIQMMRDPSRGWAWTRALLGLAADE----------IHLCG--EPSVLDLVRKILKMTG----DD------VEVREYERL 339 (700)
T ss_pred hhHHhhcCcccchHHHHHHHhhhhhh----------hhccC--CchHHHHHHHHHhhcC----Ce------eEEEeeccc
Confidence 99999988766555555444443321 11111 2233344433332110 00 001111111
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
.+-. -.+.+..-+... +++-+ |.|-+++....+...+.+.+.. +++++|.+|++.|......|+.+.++++||||
T Consensus 340 ~pL~-v~~~~~~sl~nl--k~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVA 415 (700)
T KOG0953|consen 340 SPLV-VEETALGSLSNL--KPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVA 415 (700)
T ss_pred Ccce-ehhhhhhhhccC--CCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEe
Confidence 1100 111233333332 23344 3455667888898888887655 99999999999999999999998899999999
Q ss_pred ecccccccCCCCCEEEEcCCC---------CCchhhhhhhcccccCCC---cceEEEEee
Q 047490 257 TDLAARGLDLDVDHVIMFDFP---------LNSIDYLHRTGRTARMGA---KGKVTSLVA 304 (323)
Q Consensus 257 t~~~~~Gid~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~~~---~g~~~~~~~ 304 (323)
|+++++|+|++++.||+++.. -+..+-.|.+|||||.|. .|.+-++..
T Consensus 416 sDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 416 SDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred ecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999999999999999999764 356677899999999873 455555543
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.65 E-value=8.3e-15 Score=134.70 Aligned_cols=242 Identities=12% Similarity=0.095 Sum_probs=149.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
.|..|-|++++..||.+-++++..+...+|++++...++........... ++|.++|...| +++++.+. ..
T Consensus 116 ~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v 193 (870)
T CHL00122 116 TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVV 193 (870)
T ss_pred cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhh
Confidence 47789999999999999999999999999999999888766555444444 59999999877 45555432 23
Q ss_pred CCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc-------------------------------
Q 047490 89 YGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN------------------------------- 121 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~------------------------------- 121 (323)
.+.+.+.|+||+|.++=.+ .......+...+..
T Consensus 194 ~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ 273 (870)
T CHL00122 194 QRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIED 273 (870)
T ss_pred ccccceeeeecchhheeccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCcc
Confidence 5678999999999954100 00001111111100
Q ss_pred ------------------ccCCCCCCC-----------------------------------------------------
Q 047490 122 ------------------RASKPNGQG----------------------------------------------------- 130 (323)
Q Consensus 122 ------------------~~~~~~~~~----------------------------------------------------- 130 (323)
......+.+
T Consensus 274 ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~Q 353 (870)
T CHL00122 274 LYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQ 353 (870)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHH
Confidence 000000000
Q ss_pred ------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEE
Q 047490 131 ------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVF 204 (323)
Q Consensus 131 ------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf 204 (323)
.++.+||+|...+..++.+-+......++.-. +.......-........|..++.+.+.+..+.+.|+||-
T Consensus 354 nfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk---p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIg 430 (870)
T CHL00122 354 NFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR---PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIG 430 (870)
T ss_pred HHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC---CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 14555555554333332222222222211111 111111110112234568888888777766789999999
Q ss_pred ecCcccHHHHHHHHhhCCCeeEEecCCC--CHHHHHHHHHhccccCCCCCEEEEecccccccCC
Q 047490 205 CNTLNSSRAVDHFLNENQISTVNYHGEV--PAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL 266 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~ 266 (323)
|.+....+.++..|.+.+++..+++..- ...+-+-|.+.-+. |. |.|||+.+++|.|+
T Consensus 431 T~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~--VTIATNMAGRGTDI 490 (870)
T CHL00122 431 TTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRK--GS--ITIATNMAGRGTDI 490 (870)
T ss_pred eCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCC--Cc--EEEeccccCCCcCe
Confidence 9999999999999999999988888863 23444444444443 54 89999999999997
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.64 E-value=3.5e-15 Score=127.11 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=173.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--------NMV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--------~~~ 88 (323)
+..+||||.+---+.||...+..|.....-.+..++++.. .....++.|+|+|+.++..--++. -+.
T Consensus 345 kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~ 419 (776)
T KOG1123|consen 345 KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR 419 (776)
T ss_pred cccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHh
Confidence 4689999999999999999999998777667777776633 334556899999998774322221 122
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHh-cCceee---------
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC-QGIAHL--------- 158 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~-~~~~~~--------- 158 (323)
-+.|.++++||+|.+.. ..++.++.-....| .+++|||+-++-.+..+..+ -++.-+
T Consensus 420 ~~EWGllllDEVHvvPA----~MFRRVlsiv~aHc---------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~ 486 (776)
T KOG1123|consen 420 GREWGLLLLDEVHVVPA----KMFRRVLSIVQAHC---------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQK 486 (776)
T ss_pred cCeeeeEEeehhccchH----HHHHHHHHHHHHHh---------hccceeEEeeccccccccceeecchhhhccHHHHHh
Confidence 46799999999997643 44555655555553 68999998655443322111 000000
Q ss_pred ----------------ecccccc--ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 159 ----------------RTSTLHK--KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 159 ----------------~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
....... .....+.....+- .++|...--=+++-+...+.|+|||..+.-...+++-.|.+
T Consensus 487 kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM-NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K 565 (776)
T KOG1123|consen 487 KGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM-NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK 565 (776)
T ss_pred CCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec-CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC
Confidence 0000000 0000000011111 23344433333333444788999999998887777776643
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCC-CCchhhhhhhcccccCCC---
Q 047490 221 NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP-LNSIDYLHRTGRTARMGA--- 295 (323)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~--- 295 (323)
-.++|..+..+|..+++.|+.+ ..++.++.+.+....+|+ .++++|....- .|.++-.||.||.-|..+
T Consensus 566 -----pfIYG~Tsq~ERm~ILqnFq~n-~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~d 639 (776)
T KOG1123|consen 566 -----PFIYGPTSQNERMKILQNFQTN-PKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRND 639 (776)
T ss_pred -----ceEECCCchhHHHHHHHhcccC-CccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCc
Confidence 4578999999999999999972 456778888999999999 89999986543 478888999999988642
Q ss_pred ---cceEEEEeeCC
Q 047490 296 ---KGKVTSLVAKK 306 (323)
Q Consensus 296 ---~g~~~~~~~~~ 306 (323)
....+++++..
T Consensus 640 e~fnafFYSLVS~D 653 (776)
T KOG1123|consen 640 EEFNAFFYSLVSKD 653 (776)
T ss_pred cccceeeeeeeecc
Confidence 23456666654
No 134
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.3e-15 Score=131.06 Aligned_cols=273 Identities=13% Similarity=0.107 Sum_probs=167.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
-+=|--|.|--|--++++...-+..++-++....-- .........|-++|-+.|++-+.+ .+.+..+..||+|
T Consensus 307 mIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf------d~ti~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlD 379 (1172)
T KOG0926|consen 307 MIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF------DGTIGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILD 379 (1172)
T ss_pred eeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe------ccccCCCceeEEecchHHHHHHHH-hHhhhhceeEEec
Confidence 445556877666555555544333333333322110 112233468999999999988775 4668899999999
Q ss_pred chhhhhcCCChhhHHHHHhhhccccC-----CCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 99 EADTMFDRGFGPDIRKFLVPLKNRAS-----KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 99 E~h~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|||.-.- ..+.+.-+++++..... ...-+++++|.||||+--.-...-.+.+..+.. ..........+..+
T Consensus 380 EAHERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP--likVdARQfPVsIH 455 (1172)
T KOG0926|consen 380 EAHERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP--LIKVDARQFPVSIH 455 (1172)
T ss_pred hhhhccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc--eeeeecccCceEEE
Confidence 9995321 22333333333322111 122347899999999852221111111111111 11222333344455
Q ss_pred EEeccCChhHHHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhC-------------------------------
Q 047490 174 FIKLSGSENKLEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNEN------------------------------- 221 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------- 221 (323)
|..-+..+...++..+.+.-+.. +++-+|||+....++..+++.|++.
T Consensus 456 F~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~ 535 (1172)
T KOG0926|consen 456 FNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSN 535 (1172)
T ss_pred eccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCc
Confidence 55555555555555555543321 5678999999999999999988651
Q ss_pred --------------------------------------------------------------------CCeeEEecCCCC
Q 047490 222 --------------------------------------------------------------------QISTVNYHGEVP 233 (323)
Q Consensus 222 --------------------------------------------------------------------~~~~~~~~~~~~ 233 (323)
...|..+++-++
T Consensus 536 k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs 615 (1172)
T KOG0926|consen 536 KTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLS 615 (1172)
T ss_pred ccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcC
Confidence 122334555566
Q ss_pred HHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC------------------CchhhhhhhcccccCC
Q 047490 234 AQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------------------NSIDYLHRTGRTARMG 294 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~ 294 (323)
...+..+.+.--. |..-++|+|+++++.+.+ ++.+||..|..+ |.+.--||+||+||.|
T Consensus 616 ~~~Q~RVF~~~p~--g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 616 TEKQMRVFDEVPK--GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred HHHhhhhccCCCC--CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 6666666555555 777789999999999999 999999876432 4444569999999996
Q ss_pred CcceEEEEeeC
Q 047490 295 AKGKVTSLVAK 305 (323)
Q Consensus 295 ~~g~~~~~~~~ 305 (323)
+|.||-+++.
T Consensus 694 -pGHcYRLYSS 703 (1172)
T KOG0926|consen 694 -PGHCYRLYSS 703 (1172)
T ss_pred -CCceeehhhh
Confidence 8999999874
No 135
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.64 E-value=8.1e-16 Score=104.35 Aligned_cols=80 Identities=44% Similarity=0.745 Sum_probs=75.1
Q ss_pred HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccc
Q 047490 213 AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 291 (323)
Q Consensus 213 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~ 291 (323)
.+++.|+..+..+..+||++++.+|..+++.|++ +...++++|+.+++|+|+ .+++||++++|++...|.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN--GKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc--CCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4667778889999999999999999999999999 888999999999999999 8999999999999999999999999
Q ss_pred cCC
Q 047490 292 RMG 294 (323)
Q Consensus 292 R~~ 294 (323)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 975
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.5e-14 Score=127.43 Aligned_cols=264 Identities=15% Similarity=0.160 Sum_probs=163.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
-+-+--|.+.-|--+++...+-. ...|-.++...--.+. .....-|-++|-+.|++-... ...+.++..||+
T Consensus 402 mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~-d~~L~kYSviIm 474 (1042)
T KOG0924|consen 402 MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDV------TSEDTKIKYMTDGILLRESLK-DRDLDKYSVIIM 474 (1042)
T ss_pred eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeec------CCCceeEEEeccchHHHHHhh-hhhhhheeEEEe
Confidence 34444577776666666555433 2222222211111001 112246889999988764332 234778999999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||||.-.- -.+.+.-++....... .++++|.+|||+.-.- +. .++.+...+.+. .....+...|...
T Consensus 475 DEAHERsl--NtDilfGllk~~larR-----rdlKliVtSATm~a~k--f~-nfFgn~p~f~Ip---GRTyPV~~~~~k~ 541 (1042)
T KOG0924|consen 475 DEAHERSL--NTDILFGLLKKVLARR-----RDLKLIVTSATMDAQK--FS-NFFGNCPQFTIP---GRTYPVEIMYTKT 541 (1042)
T ss_pred chhhhccc--chHHHHHHHHHHHHhh-----ccceEEEeeccccHHH--HH-HHhCCCceeeec---CCccceEEEeccC
Confidence 99995211 1122222222222221 2569999999986332 22 222222222221 1122233333333
Q ss_pred cCChhHHHHHHHHhccCCCC-CCeEEEEecCcccHHHHHHHHhhC----------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 178 SGSENKLEALLQVLEPSLSK-GNKVMVFCNTLNSSRAVDHFLNEN----------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+..+.--.++.+.+.-+... .+-+|||.+.....+..+..+++. ++.+..+++.+|...+.++.+.-..
T Consensus 542 p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~ 621 (1042)
T KOG0924|consen 542 PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEG 621 (1042)
T ss_pred chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCC
Confidence 33333334555555555443 378999999988777666555431 5678899999999888877766665
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
|..+++|+|.++++.+.+ ++.+||..|. |-|.+.-.||.||+||.| +|.|+-+++.
T Consensus 622 --~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 622 --GVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred --CceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 888999999999999999 9999998764 457778889999999995 9999999986
No 137
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.63 E-value=3.9e-14 Score=120.58 Aligned_cols=266 Identities=15% Similarity=0.212 Sum_probs=173.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
-.||+||. .+-..|++.+..|++.... +..+.++.+.... +.....|.|.+++.+..+-. .+.-..+++||+|
T Consensus 243 plliVcPA-svrftWa~al~r~lps~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~D 315 (689)
T KOG1000|consen 243 PLLIVCPA-SVRFTWAKALNRFLPSIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFD 315 (689)
T ss_pred cEEEEecH-HHhHHHHHHHHHhcccccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEe
Confidence 35777994 5567789999999886543 5555555443321 22235799999998876533 2334468999999
Q ss_pred chhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--h-----------------HHHHHHHhcCce---
Q 047490 99 EADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--V-----------------QKLVDEECQGIA--- 156 (323)
Q Consensus 99 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~-----------------~~~~~~~~~~~~--- 156 (323)
|+|.+-+.. ......++.-+.... ++|++|+||.-+ . .++-.++|....
T Consensus 316 EsH~Lk~sk-tkr~Ka~~dllk~ak--------hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~ 386 (689)
T KOG1000|consen 316 ESHMLKDSK-TKRTKAATDLLKVAK--------HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRF 386 (689)
T ss_pred chhhhhccc-hhhhhhhhhHHHHhh--------heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccce
Confidence 999986643 222444443333322 799999998421 1 111112221100
Q ss_pred --ee----------------------eccccccccccceeeEEec-cC--------------------------------
Q 047490 157 --HL----------------------RTSTLHKKIASARHDFIKL-SG-------------------------------- 179 (323)
Q Consensus 157 --~~----------------------~~~~~~~~~~~~~~~~~~~-~~-------------------------------- 179 (323)
.+ ........++. ++..+.. .+
T Consensus 387 ~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~ 465 (689)
T KOG1000|consen 387 CFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLF 465 (689)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHH
Confidence 00 00000001111 1111111 11
Q ss_pred ----ChhHHHHHHHHhccC----CCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 180 ----SENKLEALLQVLEPS----LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 180 ----~~~k~~~l~~~l~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...|...+.+.+..+ ...+.|.+|||......+.+...+.+.+.+...+.|..++..|...-+.|+.++...
T Consensus 466 y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~ 545 (689)
T KOG1000|consen 466 YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVR 545 (689)
T ss_pred HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceE
Confidence 111444555555442 246689999999999999999999999999999999999999999999999833333
Q ss_pred CEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEE
Q 047490 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 301 (323)
--+++..+++.|+++ .++.|++...+||+.-..|.-.|++|.|+++.+-+
T Consensus 546 VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 546 VAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeE
Confidence 345667889999999 99999999999999999999999999998765433
No 138
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.60 E-value=8.3e-14 Score=118.67 Aligned_cols=123 Identities=24% Similarity=0.255 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCC--CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 183 KLEALLQVLEPSLS--KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 183 k~~~l~~~l~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
|+++|.+-|....+ ..-|.|||.+-......+.-.|.+.|+.+.-+-|+|++..|...++.|.+++.-.-.|++-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 67777665544322 2347899999999999998899999999999999999999999999999844433456777899
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeC
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAK 305 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~ 305 (323)
+..+|+ .+.+|+.+|+.|++.--.|...|.+|.|+.. +++.|+-.
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 999999 9999999999999999999999999999644 45555443
No 139
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=4.7e-14 Score=124.64 Aligned_cols=124 Identities=24% Similarity=0.370 Sum_probs=99.8
Q ss_pred HHHHHHHHhccC-CCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE-EEeccc
Q 047490 183 KLEALLQVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL-VCTDLA 260 (323)
Q Consensus 183 k~~~l~~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il-v~t~~~ 260 (323)
|+..+++.+... .....+++|..+......-+...++..|.....+||.....+|+.+++.|+.+.|..+|+ ++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 555555555544 345678888887777777778889988988899999999999999999999876655555 555889
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceE--EEEeeCC
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV--TSLVAKK 306 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 306 (323)
+.|+|+ ..+|+|..|+-||++--.|++.|..|.|++..+ +-+.+.+
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 999999 999999999999999999999999999976543 3444444
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.4e-13 Score=126.60 Aligned_cols=248 Identities=13% Similarity=0.134 Sum_probs=155.9
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC---
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG--- 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~--- 85 (323)
..+..-.|..|-|++++..||..-++++..+...+|++++...++........ .-.++|+++|+..| ++++..+
T Consensus 119 aylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~ 196 (939)
T PRK12902 119 SYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMAT 196 (939)
T ss_pred HHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcc
Confidence 33344456789999999999999999999999999999999877655444333 33479999999988 4444332
Q ss_pred ---CCCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc------c----c-------------
Q 047490 86 ---NMVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN------R----A------------- 123 (323)
Q Consensus 86 ---~~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~------~----~------------- 123 (323)
....+.+.+.|+||+|.++=.+ .......+...+.. . .
T Consensus 197 ~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G 276 (939)
T PRK12902 197 DISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEG 276 (939)
T ss_pred cccccccCccceEEEecccceeeccCCCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHH
Confidence 2345778999999999954100 00011111111111 0 0
Q ss_pred --------C---CCCCCC--------------------------------------------------------------
Q 047490 124 --------S---KPNGQG-------------------------------------------------------------- 130 (323)
Q Consensus 124 --------~---~~~~~~-------------------------------------------------------------- 130 (323)
. .....+
T Consensus 277 ~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it 356 (939)
T PRK12902 277 FAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQ 356 (939)
T ss_pred HHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCC
Confidence 0 000000
Q ss_pred ------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhc
Q 047490 131 ------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192 (323)
Q Consensus 131 ------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 192 (323)
.++.+||+|...+..++.+-+......++.-........... + ......|..++.+.+.
T Consensus 357 ~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~--v-y~t~~~K~~Ai~~ei~ 433 (939)
T PRK12902 357 PETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQ--V-YKTEIAKWRAVANETA 433 (939)
T ss_pred CCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCe--E-EcCHHHHHHHHHHHHH
Confidence 156667777654444443333333332222111111111111 1 1224678888888887
Q ss_pred cCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC-CC-HHHHHHHHHhccccCCCCCEEEEecccccccCC
Q 047490 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE-VP-AQERVENLNKFKNEDGDCPTLVCTDLAARGLDL 266 (323)
Q Consensus 193 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~-~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~ 266 (323)
+..+.|.|+||-+.+.+..+.++..|...+++..+++.. .. ..+-+-+.+.-+. |. |.|||+.+++|.|+
T Consensus 434 ~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~--Ga--VTIATNMAGRGTDI 505 (939)
T PRK12902 434 EMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRK--GA--VTIATNMAGRGTDI 505 (939)
T ss_pred HHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCC--Cc--EEEeccCCCCCcCE
Confidence 776789999999999999999999999999988888886 22 3333333444333 54 89999999999997
No 141
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=2.1e-12 Score=110.06 Aligned_cols=215 Identities=18% Similarity=0.234 Sum_probs=136.3
Q ss_pred EeChHHHHHHHHcC--------CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 72 VGTPGRILQHIEDG--------NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 72 i~Tp~~l~~~~~~~--------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
.++|..+++++..+ .-.+..+..+|+||||. ..-....++.-++...... .++++|.+|||+..
T Consensus 132 C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahE-----RtlATDiLmGllk~v~~~r--pdLk~vvmSatl~a- 203 (699)
T KOG0925|consen 132 CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHE-----RTLATDILMGLLKEVVRNR--PDLKLVVMSATLDA- 203 (699)
T ss_pred cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhh-----hhHHHHHHHHHHHHHHhhC--CCceEEEeecccch-
Confidence 35667676665433 23578899999999994 2222222222222221111 36799999999853
Q ss_pred hHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhcc-C-CCCCCeEEEEecCcccHHHHHHHHhhC
Q 047490 144 VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP-S-LSKGNKVMVFCNTLNSSRAVDHFLNEN 221 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~-~~~~~~~lvf~~~~~~~~~l~~~l~~~ 221 (323)
.-++.+..+...+..+. ......|+......+-.++.+..+.+ + .+.++-+++|....++.+..++.+...
T Consensus 204 --~Kfq~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re 276 (699)
T KOG0925|consen 204 --EKFQRYFGNAPLLAVPG-----THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISRE 276 (699)
T ss_pred --HHHHHHhCCCCeeecCC-----CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 23445555443333322 22233355555555555544443322 1 235689999999999999998887642
Q ss_pred ---------CCeeEEecCCCCHHHHHHHHHhcccc---CCCCCEEEEecccccccCC-CCCEEEEcCC------------
Q 047490 222 ---------QISTVNYHGEVPAQERVENLNKFKNE---DGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------ 276 (323)
Q Consensus 222 ---------~~~~~~~~~~~~~~~r~~~~~~f~~~---~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------ 276 (323)
...+..+| ++++..+.+--... .-..+|+|+|.+++..+.+ .+.+||.-|.
T Consensus 277 ~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRv 352 (699)
T KOG0925|consen 277 VDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRV 352 (699)
T ss_pred HHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceee
Confidence 34566667 33444433332221 1246799999999999999 8999998664
Q ss_pred ------CCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 277 ------PLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 277 ------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
|-|...-.||.||+||. .+|+|..+++..
T Consensus 353 esllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 353 ESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 55788889999999998 799999999864
No 142
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=9.9e-14 Score=127.01 Aligned_cols=127 Identities=25% Similarity=0.352 Sum_probs=104.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC-CEEEEecccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC-PTLVCTDLAA 261 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~-~ilv~t~~~~ 261 (323)
|.+.|-.++-.....+++++.||.-.....-+-.+|.-.++.-..+.|.....+|...++.|+.++... .+|.+|.+.+
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 555555555444457889999999988888888888877888888999999999999999999965554 4778899999
Q ss_pred cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 262 RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 262 ~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.|+|+ .++.||+||..|++..+.|+..|++|.|+...+-++....-.+
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 99999 9999999999999999999999999999876655555544333
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.44 E-value=4.3e-12 Score=116.89 Aligned_cols=270 Identities=13% Similarity=0.104 Sum_probs=153.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
|..+|||+|..+|..|+.+.+++.++. -.+..++++....++.+.+ .+...|+|+|-..++ ..+.++
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-------aP~~~L 258 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-------APVEDL 258 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-------eccCCC
Confidence 678999999999999999999998852 3577788877665543332 455789999943222 357899
Q ss_pred cEEeecchhhhhcCC---ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFDRG---FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
.+||+||-|.-.-.. ..-+.+.+....... .+.++|+-|||++-+........... .+..........-
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~------~~~~lvLgSaTPSles~~~~~~g~~~--~~~~~~~~~~~~~ 330 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ------HGCALLIGGHARTAEAQALVESGWAH--DLVAPRPVVRARA 330 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH------cCCcEEEECCCCCHHHHHHHhcCcce--eeccccccccCCC
Confidence 999999999643211 223445554333322 14489999999987766554432211 1111100000000
Q ss_pred ceeeEEeccC----------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHH-Hhh------CCCeeEE-----
Q 047490 170 ARHDFIKLSG----------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHF-LNE------NQISTVN----- 227 (323)
Q Consensus 170 ~~~~~~~~~~----------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~-l~~------~~~~~~~----- 227 (323)
.......... ...--..+.+.+++.++++ ++|+|.|.+..+-.+... ... .+....+
T Consensus 331 P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~ 409 (665)
T PRK14873 331 PRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGG 409 (665)
T ss_pred CeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCC
Confidence 1111111110 0001235566666666778 999999997755543221 100 0000000
Q ss_pred -----ecC-------------------CCCHH------------------HHHHHHHhccccCCCCCEEEEec----ccc
Q 047490 228 -----YHG-------------------EVPAQ------------------ERVENLNKFKNEDGDCPTLVCTD----LAA 261 (323)
Q Consensus 228 -----~~~-------------------~~~~~------------------~r~~~~~~f~~~~g~~~ilv~t~----~~~ 261 (323)
+.| +...+ +++.+++.|. ++.+|||+|+ .+.
T Consensus 410 ~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~---~~~~IlVGTqgaepm~~ 486 (665)
T PRK14873 410 TPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVD---AGPALVVATPGAEPRVE 486 (665)
T ss_pred eeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhc---cCCCEEEECCCCccccc
Confidence 000 00000 1234666664 5778999998 555
Q ss_pred cccCCCCCEEEEcCC------CC------CchhhhhhhcccccCCCcceEEEEeeCCcHHHHH
Q 047490 262 RGLDLDVDHVIMFDF------PL------NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312 (323)
Q Consensus 262 ~Gid~~~~~vi~~~~------p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 312 (323)
| +++.|++.|. |. ....+.|..||+||..+.|.+++.. ..+...++
T Consensus 487 -g---~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~ 544 (665)
T PRK14873 487 -G---GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQ 544 (665)
T ss_pred -C---CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHH
Confidence 3 2344444432 21 3445579999999998899999875 44444333
No 144
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.43 E-value=3.7e-12 Score=113.09 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=104.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
|+..|-.+|......+.++|+|.+-.+....+-+.|.-.++.-..+.|.....+|+++..+|+. +..+-+|++|.+.+-
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGL 1107 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcc
Confidence 4444545554444578899999999999999999998889999999999999999999999998 344457889999999
Q ss_pred ccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeCCc
Q 047490 263 GLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKKD 307 (323)
Q Consensus 263 Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~ 307 (323)
|||+ .++.||+|+..|++..-.|.+.|++|.|+.. .++-+++.+.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 9999 9999999999999999999999999999754 4666666543
No 145
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.41 E-value=9.2e-12 Score=113.72 Aligned_cols=121 Identities=24% Similarity=0.309 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----------------------CCeeEEecCCCCHHHHHHH
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----------------------QISTVNYHGEVPAQERVEN 240 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~ 240 (323)
|+-.|+++|...-+-|.+.|||.++......+..+|... |..-..+.|.....+|+..
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 666677777776677889999999999999888887541 2334557889999999999
Q ss_pred HHhccccCC--CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEe
Q 047490 241 LNKFKNEDG--DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303 (323)
Q Consensus 241 ~~~f~~~~g--~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~ 303 (323)
.+.|+.+.. ..-.||+|.+.+-|+|+ .++.||+||..||+.--.|.+=|+.|.|+...||++-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 999997432 23479999999999999 9999999999999999999999999999876666543
No 146
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.40 E-value=1e-11 Score=99.02 Aligned_cols=144 Identities=30% Similarity=0.460 Sum_probs=103.4
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCC-CEEEeChHHHHHHHHcCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPI-DMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Iii~Tp~~l~~~~~~~~ 86 (323)
++..+...+..+++|++|+.+++.|+.+.+..+............++.........+..+. +++++|++.+.+.+....
T Consensus 45 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~ 124 (201)
T smart00487 45 ALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL 124 (201)
T ss_pred HHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC
Confidence 3344444446789999999999999999999988654423344444433233333333444 999999999999988876
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
.....++++|+||+|.+....+...+..++..+.. ..+++++|||+++........+......+.
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK--------NVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc--------cceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 67778999999999999875566777777765522 238999999999888777777666544443
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.39 E-value=4.3e-11 Score=112.38 Aligned_cols=276 Identities=15% Similarity=0.193 Sum_probs=179.9
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccc-cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
......+++++.|..+.+..+++.+.+-+.. .|+.+..+.|+...+- .+....+|+|+||++|..+ + ..+.
T Consensus 1182 ~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~ 1253 (1674)
T KOG0951|consen 1182 RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQ 1253 (1674)
T ss_pred CCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhh
Confidence 3566789999999999987777666554433 4677777777654432 2334469999999999876 2 5778
Q ss_pred CcEEeecchhhhhcCCChh------hHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc
Q 047490 92 IKYLVLDEADTMFDRGFGP------DIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+++.|+||.|.+.+. .+. .++.|...+-. +++++++|..+.+.-.- + ++.....+-......
T Consensus 1254 v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k--------~ir~v~ls~~lana~d~-i--g~s~~~v~Nf~p~~R 1321 (1674)
T KOG0951|consen 1254 VDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEK--------KIRVVALSSSLANARDL-I--GASSSGVFNFSPSVR 1321 (1674)
T ss_pred cceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHh--------heeEEEeehhhccchhh-c--cccccceeecCcccC
Confidence 999999999998742 222 25555555544 34999999988755432 1 111111111111111
Q ss_pred cccccee-eEEeccCChhHHHHHH----HHhccCCCCCCeEEEEecCcccHHHHHHHHhh--------------------
Q 047490 166 KIASARH-DFIKLSGSENKLEALL----QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-------------------- 220 (323)
Q Consensus 166 ~~~~~~~-~~~~~~~~~~k~~~l~----~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-------------------- 220 (323)
..+-..+ +-......+..+.... ..+.++-..+++.+||++++++|..++-.+-.
T Consensus 1322 ~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~ 1401 (1674)
T KOG0951|consen 1322 PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDET 1401 (1674)
T ss_pred CCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHh
Confidence 1111111 1112222222222222 22333334678999999999999877654421
Q ss_pred --CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC-----------CCCchhhhhhh
Q 047490 221 --NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF-----------PLNSIDYLHRT 287 (323)
Q Consensus 221 --~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~-----------p~s~~~~~Q~~ 287 (323)
...+.++-|.++++....-+..-|.. |.++++|.... ..|+....+.||.+|. +.+..+..|++
T Consensus 1402 l~e~l~~gvg~e~~s~~d~~iv~~l~e~--g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~ 1478 (1674)
T KOG0951|consen 1402 LRESLKHGVGHEGLSSNDQEIVQQLFEA--GAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMV 1478 (1674)
T ss_pred hhhcccccccccccCcchHHHHHHHHhc--CcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHh
Confidence 12233334889999999999999999 99999999888 8898887777777653 34677889999
Q ss_pred cccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 288 GRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 288 GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
|++.| .|+|++++...+.+..+++
T Consensus 1479 G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1479 GLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred hhhcC---CccEEEEecCchHHHHHHh
Confidence 99988 5799999998877766543
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=1e-11 Score=93.25 Aligned_cols=120 Identities=35% Similarity=0.516 Sum_probs=86.0
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
....+.++++|++|+..++.|+.+.+..+... +..+..+.++............+.+|+++|++.+.............
T Consensus 25 ~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~ 103 (144)
T cd00046 25 LDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKK 103 (144)
T ss_pred HhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhc
Confidence 33346789999999999999999999998764 56676676665544444344556899999999999888776656778
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
++++|+||+|.+................. ...+++++||||
T Consensus 104 ~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--------~~~~~i~~saTp 144 (144)
T cd00046 104 LDLLILDEAHRLLNQGFGLLGLKILLKLP--------KDRQVLLLSATP 144 (144)
T ss_pred CCEEEEeCHHHHhhcchHHHHHHHHhhCC--------ccceEEEEeccC
Confidence 99999999999876543332211111111 133899999996
No 149
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.37 E-value=1e-10 Score=112.53 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=75.6
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCC--CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQ--ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHV 271 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~v 271 (323)
.++++|||+++....+.+++.|.... .....+..+.. ..|..++++|++ ++..||++|..+.+|+|+ + +..|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHh--CCCeEEEEcceeecccccCCCceEEE
Confidence 45799999999999999999987521 11223333333 478889999998 888899999999999999 5 5578
Q ss_pred EEcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEE
Q 047490 272 IMFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSL 302 (323)
Q Consensus 272 i~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~ 302 (323)
|+.+.|. ....+.|.+||+-|..+ .|.++++
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 8887663 11235699999999864 4444433
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=3.3e-11 Score=112.54 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=128.0
Q ss_pred eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccH
Q 047490 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211 (323)
Q Consensus 132 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~ 211 (323)
++-+||+|...+..++.+-+......++.-.......... .+. .....|..++.+-+......|.|+||-+.|....
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D--~vy-~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKED--LVY-KTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCC--eEe-cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 6788999997776665555544443333222111111111 121 2356788899888877778999999999999999
Q ss_pred HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC---------EEEEcCCCCCchh
Q 047490 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---------HVIMFDFPLNSID 282 (323)
Q Consensus 212 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---------~vi~~~~p~s~~~ 282 (323)
+.+++.|+..+++..+++......+-+-+.+.-+. |. |-|||+.+++|.|+.+. +||-...+.|.+.
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--Ga--VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRI 717 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GT--VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRV 717 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--Cc--EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHH
Confidence 99999999999888888777665555555555554 65 89999999999998322 7888899999999
Q ss_pred hhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 283 YLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 283 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
..|..||+||.|.+|.+..+++..|.-
T Consensus 718 D~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 718 DRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred HHHHhcccccCCCCCcceEEEEcccHH
Confidence 999999999999999999999976653
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.22 E-value=9e-10 Score=104.82 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=80.8
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccccc
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGL 264 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gi 264 (323)
+.+.+.+......+++++|+++|.+..+.+++.|......+ ..-|... .+..++++|++ ++-.||++|..+.+|+
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~--~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR--GEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc--CCCeEEEecchhhCCC
Confidence 34555443333457899999999999999999987654444 4444322 34568999998 7777999999999999
Q ss_pred CC-C--CCEEEEcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEEee
Q 047490 265 DL-D--VDHVIMFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSLVA 304 (323)
Q Consensus 265 d~-~--~~~vi~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~~~ 304 (323)
|+ + ...||+...|. -...+.|.+||.-|... .|.++++-.
T Consensus 709 D~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 98 4 55667777652 12335799999999864 555444443
No 152
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=5.1e-10 Score=96.64 Aligned_cols=297 Identities=18% Similarity=0.236 Sum_probs=188.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccce-e-----EEEeecCccC------------Ccccccc--------------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARF-R-----STMVSGGGRL------------RPQEDSL-------------- 64 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~-~-----~~~~~~~~~~------------~~~~~~~-------------- 64 (323)
.|+||||||+++-|-.+.+.+..++...+. + -..+.|+... .+....+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999999998544322 1 1112221110 0000000
Q ss_pred ----------CCCCCEEEeChHHHHHHHHcC------CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCC
Q 047490 65 ----------NNPIDMVVGTPGRILQHIEDG------NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128 (323)
Q Consensus 65 ----------~~~~~Iii~Tp~~l~~~~~~~------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~ 128 (323)
....+|+||+|--|.-++... .-+++.+.++|+|.+|.++.+. .+++..++..+........+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccC
Confidence 123689999998887777632 2347889999999999998754 46777777766555444333
Q ss_pred CC----------------ceEEEEEeecchhhHHHHHHHhcCceeeecc-------ccccccccceeeEEecc------C
Q 047490 129 QG----------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTS-------TLHKKIASARHDFIKLS------G 179 (323)
Q Consensus 129 ~~----------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~------~ 179 (323)
.+ .|.+++|+--.+.....+..+|.+..-.... ........+.+.|..+. .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 33 2566666666666666666665543211100 11111111122221111 1
Q ss_pred ChhHHHHHHHHhccCCC--CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 180 SENKLEALLQVLEPSLS--KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.+.+..-+...+-..+. ....+|||.|+--..-++...+++.......+|.-.++.......+.|-. |+.++|+-|
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~q--gr~~vlLyT 609 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQ--GRKSVLLYT 609 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHh--cCceEEEEe
Confidence 23344444433332221 23578999999999999999999888777767776666666777888999 999999999
Q ss_pred ccc--ccccCC-CCCEEEEcCCCCCchhhh---hhhcccccCC----CcceEEEEeeCCcHHHHHHHHH
Q 047490 258 DLA--ARGLDL-DVDHVIMFDFPLNSIDYL---HRTGRTARMG----AKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 258 ~~~--~~Gid~-~~~~vi~~~~p~s~~~~~---Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
.-+ -+--++ ++..||+|.+|.++.-|. .+.+|..-.| ....|.+++++-|.-.+..+.-
T Consensus 610 ER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 610 ERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 753 334578 899999999999877664 5555554333 2357999999999887777654
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.16 E-value=9.8e-10 Score=103.40 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=69.0
Q ss_pred EEEecCcccHHHHHHHHhhC------CCeeEEecCCCCHHHHHHHHHhc---c-------------------cc--CCCC
Q 047490 202 MVFCNTLNSSRAVDHFLNEN------QISTVNYHGEVPAQERVENLNKF---K-------------------NE--DGDC 251 (323)
Q Consensus 202 lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f---~-------------------~~--~g~~ 251 (323)
+|-.++.+.+-.+++.|-.. .+.+++||+..+...|..+.+.. - +. .+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 67788888888887777543 23467899998877776554332 1 11 1456
Q ss_pred CEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhcccccCCC
Q 047490 252 PTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 295 (323)
.|+|+|++.+.|+|++++.+|. -|.+....+|++||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHDYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecccCCeeee--ccCcHHHHHHHhhccccccc
Confidence 7999999999999999997776 46678888999999999874
No 154
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=108.09 Aligned_cols=125 Identities=21% Similarity=0.371 Sum_probs=111.1
Q ss_pred hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 182 ~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
.|++.|.=+|.+.+..|.++|||++-.+..+-+-.+|.-+|+.-..+.|....++|+..+++|+.++.-+..+++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 48888888888888899999999999999999999999999999999999999999999999998545556788999999
Q ss_pred cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeCC
Q 047490 262 RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKK 306 (323)
Q Consensus 262 ~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~ 306 (323)
.|||+ .+|.||+||..||+.--.|.-.|++|.|+.- .+|-+++..
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999 9999999999999999999999999999644 455566543
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.12 E-value=5.8e-08 Score=88.93 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=82.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc--CCCCCEEEEecccccccCC------C-
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE--DGDCPTLVCTDLAARGLDL------D- 267 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~ilv~t~~~~~Gid~------~- 267 (323)
.+++++|.+.+....+.+++.|...-.....+.|+.+ .+...+++|++. .|.-.||++|..+.+|+|+ +
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5679999999999999999999764323345566543 455678888872 1356799999999999999 1
Q ss_pred ----CCEEEEcCCCC-------------------------CchhhhhhhcccccCCC---cceEEEEeeCCcHHHHHHHH
Q 047490 268 ----VDHVIMFDFPL-------------------------NSIDYLHRTGRTARMGA---KGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 268 ----~~~vi~~~~p~-------------------------s~~~~~Q~~GR~~R~~~---~g~~~~~~~~~~~~~~~~i~ 315 (323)
+++||+.-.|. ....+.|-+||.-|... .|.+.++-..-....-+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 88999987662 12335799999999864 45555554443333444433
Q ss_pred H
Q 047490 316 E 316 (323)
Q Consensus 316 ~ 316 (323)
+
T Consensus 627 ~ 627 (636)
T TIGR03117 627 E 627 (636)
T ss_pred H
Confidence 3
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.09 E-value=7.6e-09 Score=95.06 Aligned_cols=266 Identities=11% Similarity=0.150 Sum_probs=158.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
.+..++|++...++|+.+..+.++...-. + ...+.+.... .+. ...+-++.+.+++.++. ...+.+++
T Consensus 76 ~~~~~VLvVShRrSL~~sL~~rf~~~~l~-g---Fv~Y~d~~~~----~i~~~~~~rLivqIdSL~R~~---~~~l~~yD 144 (824)
T PF02399_consen 76 NPDKSVLVVSHRRSLTKSLAERFKKAGLS-G---FVNYLDSDDY----IIDGRPYDRLIVQIDSLHRLD---GSLLDRYD 144 (824)
T ss_pred CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-c---ceeeeccccc----cccccccCeEEEEehhhhhcc---cccccccC
Confidence 46789999999999999999999876321 1 1122221111 111 12466777777776653 23467799
Q ss_pred EEeecchhhhhcCCChhhH---HHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 94 YLVLDEADTMFDRGFGPDI---RKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+||+||+-.++..-+.+.+ ..+...+.....+.+ .+|++-|++.+...+++......................
T Consensus 145 vVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak----~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs 220 (824)
T PF02399_consen 145 VVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAK----TVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFS 220 (824)
T ss_pred EEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCC----eEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcc
Confidence 9999999887654332222 222222222222222 899999999999998888764332211111110000000
Q ss_pred eeeEEeccC----------------------------------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHH
Q 047490 171 RHDFIKLSG----------------------------------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDH 216 (323)
Q Consensus 171 ~~~~~~~~~----------------------------------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~ 216 (323)
....+.... .......+...|...+..|.++-||+.+...++.+++
T Consensus 221 ~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~ 300 (824)
T PF02399_consen 221 NRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVAR 300 (824)
T ss_pred cceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHH
Confidence 000000000 0011123344444444567888899999999999999
Q ss_pred HHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEEEEcCCC----CCchhhhhhhcc
Q 047490 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHVIMFDFP----LNSIDYLHRTGR 289 (323)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~vi~~~~p----~s~~~~~Q~~GR 289 (323)
+.+.....+..++|.-+..+ + +.| ++.+|++-|+++..|+++ . ++-++-|=-| .+.....|++||
T Consensus 301 ~~~~~~~~Vl~l~s~~~~~d---v-~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgR 372 (824)
T PF02399_consen 301 FCARFTKKVLVLNSTDKLED---V-ESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGR 372 (824)
T ss_pred HHHhcCCeEEEEcCCCCccc---c-ccc----cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHH
Confidence 99888888888888665442 2 223 557799999999999998 4 6666666323 234457899999
Q ss_pred cccCCCcceEEEEee
Q 047490 290 TARMGAKGKVTSLVA 304 (323)
Q Consensus 290 ~~R~~~~g~~~~~~~ 304 (323)
+.... ....+++++
T Consensus 373 vR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 373 VRSLL-DNEIYVYID 386 (824)
T ss_pred HHhhc-cCeEEEEEe
Confidence 96553 444444444
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.07 E-value=1.1e-09 Score=101.08 Aligned_cols=283 Identities=15% Similarity=0.162 Sum_probs=180.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~ 88 (323)
.+..+.+++...-|+.--++++.+.....|++++....+.....+..... ++|.++|-..| ++++..+ ...
T Consensus 120 ~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~v 197 (822)
T COG0653 120 AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKV 197 (822)
T ss_pred CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhh
Confidence 35578888999999998899999999999999999999876555544444 59999998887 4444433 223
Q ss_pred CCCCcEEeecchhhhh----------cCC--C----hhhHHHHHhhhcccc-CCCCCCC---------------------
Q 047490 89 YGDIKYLVLDEADTMF----------DRG--F----GPDIRKFLVPLKNRA-SKPNGQG--------------------- 130 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~----------~~~--~----~~~~~~i~~~~~~~~-~~~~~~~--------------------- 130 (323)
...+.+.|+||++.++ ++. . ...+..++..+.... ...+..+
T Consensus 198 qr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~ 277 (822)
T COG0653 198 QRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIEN 277 (822)
T ss_pred hccCCeEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCccc
Confidence 4568899999999854 110 1 111222221111110 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 047490 131 -------------------------------------------------------------------------------- 130 (323)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (323)
T Consensus 278 Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITf 357 (822)
T COG0653 278 LYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITF 357 (822)
T ss_pred ccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhH
Confidence
Q ss_pred -------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEE
Q 047490 131 -------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMV 203 (323)
Q Consensus 131 -------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lv 203 (323)
.++.+||+|...+..++.+-+......++.-. +.....+.=........|..++++.+......|.|+||
T Consensus 358 Qn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnr---p~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLv 434 (822)
T COG0653 358 QNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNR---PIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLV 434 (822)
T ss_pred HHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCCC---cccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEE
Confidence 02222222222222222222222222221111 11111111111122456888888888887789999999
Q ss_pred EecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC--CCC----------EE
Q 047490 204 FCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL--DVD----------HV 271 (323)
Q Consensus 204 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~--~~~----------~v 271 (323)
-+.+....+.+.+.|.+.+++..++.......+-+.+.+.-+. |. +-|||+.+++|-|+ +-. +|
T Consensus 435 gT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~--ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~V 510 (822)
T COG0653 435 GTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQP--GA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHV 510 (822)
T ss_pred cCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCC--Cc--cccccccccCCcccccCCCHHHHHHhCCcEE
Confidence 9999999999999999999998888888776666666665555 55 78999999999998 332 45
Q ss_pred EEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 272 IMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
|-...-.|.+.--|..||+||.|-+|..-.+++..|
T Consensus 511 IgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 511 IGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred EecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 555555677777799999999999998887777544
No 158
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.06 E-value=9.6e-10 Score=79.96 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=62.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++|||.||+.++..+.+.++.. ..+...-.-. ....++.-|-++|...+.+.+.+ .....++++||
T Consensus 33 ~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~-------~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II 100 (148)
T PF07652_consen 33 RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM-------RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVII 100 (148)
T ss_dssp T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEE
T ss_pred cCeEEEecccHHHHHHHHHHHhcC----CcccCceeee-------ccccCCCcccccccHHHHHHhcC-cccccCccEEE
Confidence 679999999999999988877544 2222211110 12234457889999999887766 55578999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
+||||-. .+........+...... ....+|++|||||....
T Consensus 101 ~DEcH~~-----Dp~sIA~rg~l~~~~~~---g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 101 MDECHFT-----DPTSIAARGYLRELAES---GEAKVIFMTATPPGSED 141 (148)
T ss_dssp ECTTT-------SHHHHHHHHHHHHHHHT---TS-EEEEEESS-TT---
T ss_pred EeccccC-----CHHHHhhheeHHHhhhc---cCeeEEEEeCCCCCCCC
Confidence 9999942 22222222222222111 12479999999987654
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.02 E-value=2.3e-08 Score=96.64 Aligned_cols=274 Identities=15% Similarity=0.142 Sum_probs=149.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCC-CCCEEEeChHHHHHHHHcCC--CCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN-PIDMVVGTPGRILQHIEDGN--MVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~Tp~~l~~~~~~~~--~~~~ 90 (323)
....|.+++||.+++|-.|+.+.+..+........ ...+...-.+.+.+ ...|+|||-++|-....... ....
T Consensus 300 ~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~ 375 (962)
T COG0610 300 LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKR 375 (962)
T ss_pred ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCC
Confidence 37789999999999999999999999975432211 11112222233332 34899999999987775531 1122
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH-HHHHhcCceeeecccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL-VDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
+=-.||+||||+... +.....+-..++.. ..+++|+||.-..... .....+.+.+............
T Consensus 376 ~~ivvI~DEaHRSQ~---G~~~~~~~~~~~~a---------~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~ 443 (962)
T COG0610 376 KNVVVIIDEAHRSQY---GELAKLLKKALKKA---------IFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGA 443 (962)
T ss_pred CcEEEEEechhhccc---cHHHHHHHHHhccc---------eEEEeeCCccccccccchhhhhcceeEEEecchhhccCc
Confidence 233789999998643 44444444444432 7999999995332222 1111222211111111111000
Q ss_pred c-eeeEEec---cC---------------------------------------ChhHH----HHHHHHhccCCCCCCeEE
Q 047490 170 A-RHDFIKL---SG---------------------------------------SENKL----EALLQVLEPSLSKGNKVM 202 (323)
Q Consensus 170 ~-~~~~~~~---~~---------------------------------------~~~k~----~~l~~~l~~~~~~~~~~l 202 (323)
. ...|... .. ...+. ..+.+........+.+.+
T Consensus 444 vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam 523 (962)
T COG0610 444 VLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAM 523 (962)
T ss_pred eeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEE
Confidence 0 0000000 00 00001 111111111112345777
Q ss_pred EEecCcccHHHHHHHHhhCCC---------e------------eEE--ecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 203 VFCNTLNSSRAVDHFLNENQI---------S------------TVN--YHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 203 vf~~~~~~~~~l~~~l~~~~~---------~------------~~~--~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
+.+.++..+..+.+....... . -.. .|.. ..........+|..+....++||.++.
T Consensus 524 ~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dm 602 (962)
T COG0610 524 VVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDM 602 (962)
T ss_pred EEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEcc
Confidence 777777744444433222100 0 000 0111 122334455565444578899999999
Q ss_pred cccccCCCCCEEEEcCCCCCchhhhhhhcccccCC----CcceEEEEee
Q 047490 260 AARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMG----AKGKVTSLVA 304 (323)
Q Consensus 260 ~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~----~~g~~~~~~~ 304 (323)
+-+|+|.++-+.+..|-|--.....|++-|+.|.- ..|.++.+..
T Consensus 603 lLTGFDaP~L~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 603 LLTGFDAPCLNTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred ccccCCccccceEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 99999998888888999998999999999999964 2344544444
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.85 E-value=2e-08 Score=98.19 Aligned_cols=125 Identities=29% Similarity=0.448 Sum_probs=108.0
Q ss_pred hHHHHHHHHh-ccCCCCCC--eEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 182 NKLEALLQVL-EPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 182 ~k~~~l~~~l-~~~~~~~~--~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.|...+.+++ ......+. ++++|++.......+...++..++....++|.++...|...++.|.++++..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5788888888 56666777 99999999999999999999988888999999999999999999998434555677788
Q ss_pred ccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 259 ~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
+.+.|+|+ .+++||++|+.|++....|+..|+.|.|++.. ++-+++..
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 99999999 99999999999999999999999999997664 45555544
No 161
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.83 E-value=1.7e-07 Score=84.87 Aligned_cols=125 Identities=25% Similarity=0.383 Sum_probs=98.8
Q ss_pred HhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC------------------eeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI------------------STVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 190 ~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
++.+....+.++|+|.++......+.+.+.+... .-..+.|..+..+|++.+.+|+.++|--
T Consensus 711 ~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~ls 790 (1387)
T KOG1016|consen 711 ILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLS 790 (1387)
T ss_pred eeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCce
Confidence 3344444567999999999999988888866321 2234678888899999999999855433
Q ss_pred -CEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 252 -PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 252 -~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
-++++|.....|+|+ .++.+++++..|++.--.|.+.|+.|-|+...|+++----|...-+.|
T Consensus 791 Wlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 791 WLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred eeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 478899999999999 999999999999999999999999999998888887766655444433
No 162
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.82 E-value=1.1e-08 Score=94.30 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCCCCC-CeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 183 KLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~-~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
|+..+++.+....... .+++||++...-+..+.-.+...++....+.|.|....|.+.+..|..+++..-.+++..+..
T Consensus 523 ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 523 KIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred hhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 4455555554322222 399999999999999988888778888889999999999999999997444444567779999
Q ss_pred cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEE
Q 047490 262 RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301 (323)
Q Consensus 262 ~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 301 (323)
.|+|+ .+.+|+..|+-||+....|.+.|+.|.|+...+.+
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999 99999999999999999999999999997554443
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.77 E-value=4.6e-08 Score=83.29 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=70.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc---CCCCCCCCcEE
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED---GNMVYGDIKYL 95 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~---~~~~~~~~~~v 95 (323)
.+||+||. .+..||.+++.++......++....+...............+++|+|++.+...... ..+..-++++|
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~v 138 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRV 138 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEE
T ss_pred ceeEeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeE
Confidence 59999999 888999999999996545677666666412222223334578999999999811000 00112348999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
|+||+|.+-+ ........+..+... ..+++||||...
T Consensus 139 IvDEaH~~k~--~~s~~~~~l~~l~~~---------~~~lLSgTP~~n 175 (299)
T PF00176_consen 139 IVDEAHRLKN--KDSKRYKALRKLRAR---------YRWLLSGTPIQN 175 (299)
T ss_dssp EETTGGGGTT--TTSHHHHHHHCCCEC---------EEEEE-SS-SSS
T ss_pred EEeccccccc--ccccccccccccccc---------eEEeeccccccc
Confidence 9999999843 334444444445432 789999998543
No 164
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.72 E-value=2.4e-08 Score=78.56 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=66.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecC-----------ccCCccccccCCCCCEEEeChHHHHHHHHcCC-
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG-----------GRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN- 86 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~- 86 (323)
++++++|+..|+.|+.+.+..+.............. ..............+++++|.+.+........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 131 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK 131 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccc
Confidence 899999999999999999977765432111111000 00001111123456899999999987765421
Q ss_pred ----------CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 87 ----------MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 87 ----------~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
......++||+||+|++.... ....++. .. ...+++|||||.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~---~~~~i~~-~~---------~~~~l~lTATp~r 184 (184)
T PF04851_consen 132 IDESARRSYKLLKNKFDLVIIDEAHHYPSDS---SYREIIE-FK---------AAFILGLTATPFR 184 (184)
T ss_dssp ------GCHHGGGGSESEEEEETGGCTHHHH---HHHHHHH-SS---------CCEEEEEESS-S-
T ss_pred cccchhhhhhhccccCCEEEEehhhhcCCHH---HHHHHHc-CC---------CCeEEEEEeCccC
Confidence 234567899999999865422 1445544 21 2279999999863
No 165
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.46 E-value=5.8e-07 Score=69.30 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=57.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCC--eeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec--ccccccCC-C--CC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQI--STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD--LAARGLDL-D--VD 269 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~--~~~~Gid~-~--~~ 269 (323)
.++.++||+++....+.+.+.++.... ...++.. +.....++++.|++ ++-.||+++. .+.+|+|+ + ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~--~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR--GEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC--SSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh--ccCeEEEEEecccEEEeecCCCchhh
Confidence 458999999999999999999876532 1122333 35688899999999 7777999998 99999999 5 88
Q ss_pred EEEEcCCCC
Q 047490 270 HVIMFDFPL 278 (323)
Q Consensus 270 ~vi~~~~p~ 278 (323)
.||+.+.|.
T Consensus 84 ~vii~glPf 92 (167)
T PF13307_consen 84 AVIIVGLPF 92 (167)
T ss_dssp EEEEES---
T ss_pred eeeecCCCC
Confidence 999999873
No 166
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.41 E-value=2.3e-06 Score=83.35 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=82.3
Q ss_pred HHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCC--eeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 185 EALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQI--STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 185 ~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
..+.+.+.... ..+++++|+++|.+..+.+++.|+.... ....+.-++....|..++++|++ ++-.||++|..+.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~--~~~~iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ--FDKAILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh--cCCeEEEecCccc
Confidence 44444443322 2567999999999999999999875422 12233334444567889999998 7777999999999
Q ss_pred cccCC-C--CCEEEEcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEEe
Q 047490 262 RGLDL-D--VDHVIMFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSLV 303 (323)
Q Consensus 262 ~Gid~-~--~~~vi~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~~ 303 (323)
+|||+ + +.+||+...|. -...+.|.+||+-|..+ .|.++++-
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 99999 4 68899988663 12234699999999874 45444433
No 167
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.38 E-value=8e-06 Score=77.37 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=47.1
Q ss_pred CCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
..|+++||..+...+-.+.+.++.+..+||||||++.+... .-.|+...+.... .--+.++|++|.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~---eaFI~rlyr~~n~-----~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQ---EAFILRLYRQKNK-----TGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccccc---HHHHHHHHHHhCC-----CcceEEecCCCc
Confidence 48999999999988888899999999999999999865321 2223333332221 114778888875
No 168
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.37 E-value=4.2e-06 Score=79.15 Aligned_cols=104 Identities=25% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHVI 272 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~vi 272 (323)
.+++++||++|....+.+.+.++..... ....+|.. .+...++.|...... .++|++..+.+|+|+ + +..||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4559999999999999999999876542 33444543 444788899872222 799999999999999 4 78899
Q ss_pred EcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEEee
Q 047490 273 MFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSLVA 304 (323)
Q Consensus 273 ~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~~~ 304 (323)
+.+.|. -.....|.+||+-|... .|.++++-.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 988773 23345799999999753 344444433
No 169
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.34 E-value=8.8e-06 Score=76.85 Aligned_cols=116 Identities=25% Similarity=0.369 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc--CCCCCEEEEecccc
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE--DGDCPTLVCTDLAA 261 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~ilv~t~~~~ 261 (323)
.+.+.+.+......++.++|++++....+.++..|..........+|.. .+..+++.|++. .++-.||++|..+.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 4455554544333455689999999999999998874321223445542 466777666641 15566999999999
Q ss_pred cccCC-C--CCEEEEcCCCCC------------------------------chhhhhhhcccccCCC-cceEEEE
Q 047490 262 RGLDL-D--VDHVIMFDFPLN------------------------------SIDYLHRTGRTARMGA-KGKVTSL 302 (323)
Q Consensus 262 ~Gid~-~--~~~vi~~~~p~s------------------------------~~~~~Q~~GR~~R~~~-~g~~~~~ 302 (323)
+|||+ + +++||+...|.. ...+.|.+||.-|..+ .|.++++
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 99999 4 889999887631 1124689999999864 4444333
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.30 E-value=2.3e-07 Score=86.73 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=96.3
Q ss_pred hhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc
Q 047490 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
..++.......++.+++++.|.++|+..-.+.+.......|++++.+.|+...+.. ... .++++|+||+++.....+
T Consensus 961 e~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--~v~-~~~~~ittpek~dgi~Rs 1037 (1230)
T KOG0952|consen 961 ELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--AVR-EADIVITTPEKWDGISRS 1037 (1230)
T ss_pred HHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh--hee-cCceEEcccccccCcccc
Confidence 34566667778889999999999999998888888777778999999998776621 222 368999999999888775
Q ss_pred C--CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 85 G--NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 85 ~--~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
| ...++++..+|+||.|.+.+ ++++.+..+...... .+.....+++.+++|--+.
T Consensus 1038 w~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~-~s~~t~~~vr~~glsta~~ 1094 (1230)
T KOG0952|consen 1038 WQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNY-ISSQTEEPVRYLGLSTALA 1094 (1230)
T ss_pred ccchhhhccccceeecccccccC-CCcceEEEEeecccc-CccccCcchhhhhHhhhhh
Confidence 4 45588999999999998765 455555444443333 2333445677887765543
No 171
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=4.6e-05 Score=72.48 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred HHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhCCC------eeEEecCCCCHHHHHHHHHhcccc--CCCCCEE
Q 047490 184 LEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNENQI------STVNYHGEVPAQERVENLNKFKNE--DGDCPTL 254 (323)
Q Consensus 184 ~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~il 254 (323)
...+.+.+.+... .++.++||+++....+.+.+.+...+. ...++..+-...++..++++|++. .+.-.||
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEE
Confidence 3444444433222 468999999999999988887765422 112222222225778899999752 1334589
Q ss_pred EEe--cccccccCC-C--CCEEEEcCCCC-Cc------------------------------hhhhhhhcccccCCCcce
Q 047490 255 VCT--DLAARGLDL-D--VDHVIMFDFPL-NS------------------------------IDYLHRTGRTARMGAKGK 298 (323)
Q Consensus 255 v~t--~~~~~Gid~-~--~~~vi~~~~p~-s~------------------------------~~~~Q~~GR~~R~~~~g~ 298 (323)
+++ ..+.+|||+ + +..||+.+.|. ++ ....|.+||+-|..+.--
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G 666 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYG 666 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceE
Confidence 999 789999999 5 89999999884 11 223599999999865333
Q ss_pred EEEEee
Q 047490 299 VTSLVA 304 (323)
Q Consensus 299 ~~~~~~ 304 (323)
++++++
T Consensus 667 ~iillD 672 (705)
T TIGR00604 667 SIVLLD 672 (705)
T ss_pred EEEEEe
Confidence 344443
No 172
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.83 E-value=4.2e-05 Score=72.92 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=80.2
Q ss_pred hhcccc--CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc-ccccC--CCCCEEEeChHHHHHHH
Q 047490 8 MLGVLM--KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ-EDSLN--NPIDMVVGTPGRILQHI 82 (323)
Q Consensus 8 ~~~~~~--~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Iii~Tp~~l~~~~ 82 (323)
++++++ +.++.--||+|||-.+.+ |.=+|++|.+ ++++...+|.-..... .+.|. +.++|+|+++..++.-+
T Consensus 654 llAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~ 730 (1958)
T KOG0391|consen 654 LLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL 730 (1958)
T ss_pred HHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH
Confidence 344443 344556688899988766 5667999987 6688888887543322 22232 34689999999887655
Q ss_pred HcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
.. +...+|.|+|+||+|++-+ |...-+..+..+... +.+++|.|+-
T Consensus 731 ~A--FkrkrWqyLvLDEaqnIKn--fksqrWQAllnfnsq---------rRLLLtgTPL 776 (1958)
T KOG0391|consen 731 TA--FKRKRWQYLVLDEAQNIKN--FKSQRWQALLNFNSQ---------RRLLLTGTPL 776 (1958)
T ss_pred HH--HHhhccceeehhhhhhhcc--hhHHHHHHHhccchh---------heeeecCCch
Confidence 43 4567899999999999865 444444444444433 6788888874
No 173
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.78 E-value=9.9e-05 Score=68.70 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=81.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC-------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN-------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~ 269 (323)
.+-+++|.+-....-.+..++... .+.+...|+.....+..++.+...+ |..+++++|.+.+..+.+ ++.
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~--gv~kii~stniaetsiTidd~v 720 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE--GVTKIILSTNIAETSITIDDVV 720 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc--cccccccccceeeEeeeeccee
Confidence 457889999999888888777543 4566778998888888888887777 999999999999998888 777
Q ss_pred EEEEcCCC------------------CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 270 HVIMFDFP------------------LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 270 ~vi~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
.|+..+.- .|.....||.||+||. .+|.|..+++.
T Consensus 721 ~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 721 YVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 77764321 2555668999999998 67888777664
No 174
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.77 E-value=4.2e-05 Score=62.13 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=68.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCc-cCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
....|.+|||+.+--.+.++.+.++.+... +..+..+++-- ...++...+. ...+|.||||+++..++..+.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 455799999999999999999999988432 12344444332 4445555554 46799999999999999999999999
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
+.+||+|--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998764
No 175
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.55 E-value=0.00045 Score=51.41 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=37.3
Q ss_pred EecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEEEEcCCC
Q 047490 227 NYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHVIMFDFP 277 (323)
Q Consensus 227 ~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~vi~~~~p 277 (323)
++..+....+..+++++|+++ ++..||+++..+.+|+|+ + +..||+.+.|
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~-~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEA-CENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHc-CCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 344445555678889999872 222699999889999999 4 7889998877
No 176
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.49 E-value=0.0002 Score=59.01 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=69.5
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~ 85 (323)
+|++.+..-.|..|=|++.+..|+..-++++..++..+|+++....++.....+..... ++|+++|...| .+++...
T Consensus 108 ~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~ 185 (266)
T PF07517_consen 108 ALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDN 185 (266)
T ss_dssp HHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHH
Confidence 34444444457789999999999999999999999999999999999876544333333 58999999998 3445442
Q ss_pred C------CCCCCCcEEeecchhhhh
Q 047490 86 N------MVYGDIKYLVLDEADTMF 104 (323)
Q Consensus 86 ~------~~~~~~~~vIiDE~h~~~ 104 (323)
. ...+.++++|+||+|.++
T Consensus 186 ~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 186 LALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhccchhccCCCCEEEEeccceEE
Confidence 1 125678999999999875
No 177
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.37 E-value=0.00076 Score=50.27 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=31.4
Q ss_pred HHHHHHHHhccccCC-CCCEEEEecc--cccccCC-C--CCEEEEcCCC
Q 047490 235 QERVENLNKFKNEDG-DCPTLVCTDL--AARGLDL-D--VDHVIMFDFP 277 (323)
Q Consensus 235 ~~r~~~~~~f~~~~g-~~~ilv~t~~--~~~Gid~-~--~~~vi~~~~p 277 (323)
.+..+++++|++... .-.||+++.- +.+|+|+ + +..||+.+.|
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 344678888886211 0258888876 9999999 5 7899998877
No 178
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.37 E-value=0.0006 Score=56.23 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=59.1
Q ss_pred HHHHhccccCCCCCEEEEecccccccCCCCC---------EEEEcCCCCCchhhhhhhcccccCCCc-ceEEEEeeC---
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---------HVIMFDFPLNSIDYLHRTGRTARMGAK-GKVTSLVAK--- 305 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---------~vi~~~~p~s~~~~~Q~~GR~~R~~~~-g~~~~~~~~--- 305 (323)
...+.|.+ |+..|+|.+.+.+.|+.++++ .-|...+|||....+|..||++|.++. ...+.++..
T Consensus 52 ~e~~~F~~--g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC--CCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45678999 999999999999999998432 466788999999999999999999973 344444432
Q ss_pred CcHHHHHHHHHHHH
Q 047490 306 KDVLLADRIEEAIR 319 (323)
Q Consensus 306 ~~~~~~~~i~~~l~ 319 (323)
.|...+..+.+-|+
T Consensus 130 gE~Rfas~va~rL~ 143 (278)
T PF13871_consen 130 GERRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHHHh
Confidence 35555555555443
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.15 E-value=0.0032 Score=52.37 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC---CCC----
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN---MVY---- 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~---~~~---- 89 (323)
..+.|++..+.+|-.+..+.++..+.. .+.+..+..-... . ...+ +-.|+++|+..|..-..... ..+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~-~-~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG-D-IIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC-c-CCCC--CCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 358999999999999999999988754 3444433321111 0 0111 23799999998876543211 100
Q ss_pred ----CC-CcEEeecchhhhhcCCC----hhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 90 ----GD-IKYLVLDEADTMFDRGF----GPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 90 ----~~-~~~vIiDE~h~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
.+ =.+||+||||..-+... ..........+....++. +++.+|||...+.
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-----RvvY~SATgasep 224 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-----RVVYASATGASEP 224 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-----cEEEecccccCCC
Confidence 12 24899999999865432 123333333343333222 7999999986443
No 180
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.02 E-value=0.0047 Score=58.59 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=77.5
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
......+..|....+..+.+....+.++|+.+|+...+..+.+.|++ .+..+..+||+++..++.+.+.+..+ |..+
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~--g~~~ 243 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR--GEAK 243 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc--CCCC
Confidence 33344566788777766666556688999999999999999999876 47789999999999999999999888 8889
Q ss_pred EEEEecccccccCC-CCCEEEEcC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFD 275 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~ 275 (323)
|+|+|.... -..+ ++..+|.-+
T Consensus 244 IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 244 VVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred EEEeccHHh-cccccCCCEEEEEC
Confidence 999997432 2456 677766543
No 181
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0023 Score=60.10 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=81.8
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
...-..+..|.+..++.+.+.+.+|+.+|+.+|.......+.+.|+.. +.++..+|+++++.+|.+.+.+... |+.+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~--G~~~ 298 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR--GEAR 298 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc--CCce
Confidence 344455778999999999999899999999999999999998888754 8899999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEE
Q 047490 253 TLVCTDLAARGLDL-DVDHVIM 273 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~ 273 (323)
|+|+|..+- -.-+ ++..+|.
T Consensus 299 vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 299 VVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEEEechhh-cCchhhccEEEE
Confidence 999997543 2345 6666665
No 182
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.94 E-value=0.0049 Score=57.90 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-C-CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-Q-ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
+..|.+..++++...+..|+++||.++....+..+.+.|++. + ..+..+|+++++.+|.+.+....+ |+.+|+|+|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcEEEEc
Confidence 467999999999888888999999999999999999999865 3 578999999999999999999998 999999999
Q ss_pred cccccccCC-CCCEEEEc
Q 047490 258 DLAARGLDL-DVDHVIMF 274 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~ 274 (323)
.... -..+ ++..+|..
T Consensus 248 RSAv-FaP~~~LgLIIvd 264 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIW 264 (665)
T ss_pred ceeE-EeccCCCCEEEEE
Confidence 7643 3456 67777764
No 183
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.91 E-value=0.0036 Score=57.14 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.+..|....+..+......++++|+.+|+...+..+++.|++. +..+..+||+++..+|.+.+.+..+ |+.+|+|+|
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGT 83 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGT 83 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECC
Confidence 3556777766666555567889999999999999999988764 6778999999999999999988888 888999999
Q ss_pred cccccccCC-CCCEEEEc
Q 047490 258 DLAARGLDL-DVDHVIMF 274 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~ 274 (323)
...- -..+ ++..||.-
T Consensus 84 rsal-f~p~~~l~lIIVD 100 (505)
T TIGR00595 84 RSAL-FLPFKNLGLIIVD 100 (505)
T ss_pred hHHH-cCcccCCCEEEEE
Confidence 7533 2456 77777754
No 184
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.83 E-value=0.0073 Score=57.45 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=73.9
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|.....-.+......+.++++.+|++..|...++.++. .+..+..+||+++..++.++++...+ |
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g 363 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--G 363 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--C
Confidence 34444455666544333333334678999999999999888777654 36889999999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
...|+|+|.. +...+.+ ++..||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 9999999975 4445677 7887775
No 185
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.40 E-value=0.017 Score=54.53 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=72.7
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+-.+......+.++++.+|++..|...++.+++ .+..+..++|+++..++..+++...+ |
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g 337 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--G 337 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--C
Confidence 34444455666543322222234677999999999999988777664 36899999999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
+.+|+|+|.. +...+.+ ++..||+
T Consensus 338 ~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 338 QIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCCEEEecHHHHhccccccccceEEE
Confidence 9999999975 4445677 7877765
No 186
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.37 E-value=0.015 Score=56.88 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=77.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC---------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM--------- 87 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~--------- 87 (323)
.+.+||++| .++..||..++....... +++....|-.+..-.......++||++||+..+..-+.....
T Consensus 420 tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~ 497 (1394)
T KOG0298|consen 420 TGATLIICP-NAILMQWFEEIHKHISSL-LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRH 497 (1394)
T ss_pred cCceEEECc-HHHHHHHHHHHHHhcccc-ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhc
Confidence 367899999 677899999999988653 565555553322222222334589999999999665543210
Q ss_pred -----CC-C-----CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH
Q 047490 88 -----VY-G-----DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147 (323)
Q Consensus 88 -----~~-~-----~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 147 (323)
.+ + .|=-|++|||+.+-+ -......++..+... ...++|+||...+..+
T Consensus 498 qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~~a~M~~rL~~i---------n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 498 QSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSAAAEMVRRLHAI---------NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred ccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHHHHHHHHHhhhh---------ceeeecCCchhhhhhh
Confidence 01 1 122479999987755 346667777777665 6889999987664443
No 187
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.05 E-value=0.031 Score=54.74 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=73.4
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+..+......+.+++|.+|++..|...++.+++ .+..+..++|..+..++..+++.+.+ |
T Consensus 476 Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g 553 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS--G 553 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc--C
Confidence 44444456676544433333334567999999999999998887665 36678889999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
+.+|+|+|.. +...+.+ ++..+|+
T Consensus 554 ~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 554 KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CceEEEchHHHhhCCCCcccCCEEEe
Confidence 9999999974 4445777 8887776
No 188
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.42 E-value=0.084 Score=53.07 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=70.9
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+.........+.+++|.+|++..|...++.+++. +..+..++|..+..++.++++...+ |
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~--g 702 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE--G 702 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh--C
Confidence 344444566765333222222245789999999999999888877642 4677789999999999999999888 8
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
..+|+|+|+. +...+.+ ++..+|+
T Consensus 703 ~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 703 KIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 8999999974 4445667 7777765
No 189
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.055 Score=52.13 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=59.6
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCC-----CeeEE-ecCCCCHHHHHHHHHhccccCCCCCEEEEecc-cccccCC---
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQ-----ISTVN-YHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-AARGLDL--- 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~~~Gid~--- 266 (323)
+++++++.+||...+...++.|+... ..+.. +|+.|++.++++.+++|.+ |..+|+|+|+. +..-.+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES--GDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc--CCccEEEEeHHHHHhhHHHhcc
Confidence 67899999999999999999887642 33333 9999999999999999999 99999999964 3333332
Q ss_pred -CCCEEEEcC
Q 047490 267 -DVDHVIMFD 275 (323)
Q Consensus 267 -~~~~vi~~~ 275 (323)
.++.|+.=|
T Consensus 202 ~kFdfifVDD 211 (1187)
T COG1110 202 LKFDFIFVDD 211 (1187)
T ss_pred cCCCEEEEcc
Confidence 355555533
No 190
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.29 E-value=0.018 Score=56.25 Aligned_cols=96 Identities=26% Similarity=0.290 Sum_probs=71.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEc
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMF 274 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~ 274 (323)
+...++|+|+........+...+...++..... |+ .+.....+..|.+ =. ..|+-++..+.|+|+ ++.||+..
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~-~~--t~d~~dc~~~fk~--I~-clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLD-GE--TEDFDDCIICFKS--ID-CLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhc-cC--Ccchhhhhhhccc--ce-EEEEEeccCcccccHHhhhhhhee
Confidence 344799999998877777766666554433222 21 2344556666764 22 357778899999999 99999999
Q ss_pred CCCCCchhhhhhhcccccCCCcc
Q 047490 275 DFPLNSIDYLHRTGRTARMGAKG 297 (323)
Q Consensus 275 ~~p~s~~~~~Q~~GR~~R~~~~g 297 (323)
++-.++..-.|.+||+.|.|+.-
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred ccccCchHHHhhhhhhhhccccc
Confidence 99999999999999999999744
No 191
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.08 E-value=0.097 Score=51.79 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhc
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 105 (323)
++|+|++..-|+..+....-.+...+++||||||++.+
T Consensus 432 AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 432 ADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 58999999988776643333456789999999999863
No 192
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.83 E-value=0.07 Score=52.60 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=69.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC----Ccccccc-CC----CCCEEEeChHHHHHHH-HcCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL----RPQEDSL-NN----PIDMVVGTPGRILQHI-EDGN 86 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~----~~~Iii~Tp~~l~~~~-~~~~ 86 (323)
.+.+++++| .+++.+|.+++.++.+.... +...+|.... ......+ .. ..+++++|++.+.... ....
T Consensus 390 ~~~~liv~p-~s~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~ 467 (866)
T COG0553 390 LGPALIVVP-ASLLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGG 467 (866)
T ss_pred CCCeEEEec-HHHHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHH
Confidence 468999999 55677889999888775432 5556665431 1112212 21 1689999999887732 1223
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
+.-..++++|+||+|.+-+.. ......+ ..+... ..+.+|.||-
T Consensus 468 l~~~~~~~~v~DEa~~ikn~~-s~~~~~l-~~~~~~---------~~~~LtgTPl 511 (866)
T COG0553 468 LKKIEWDRVVLDEAHRIKNDQ-SSEGKAL-QFLKAL---------NRLDLTGTPL 511 (866)
T ss_pred HhhceeeeeehhhHHHHhhhh-hHHHHHH-HHHhhc---------ceeeCCCChH
Confidence 445578999999999975532 2222222 244433 4588899983
No 193
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.62 E-value=0.21 Score=49.20 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHH----HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSR----AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
..|.+-.+...-.....|.++.|.+||.=.|+ .+.+.|+..+..+..++.-.+.+++..+++...+ |+++|+|+
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~--G~vDIvIG 703 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE--GKVDIVIG 703 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc--CCccEEEe
Confidence 34555444333333356789999999976555 5566666678888889998999999999999999 99999999
Q ss_pred e-cccccccCC-CCCEEEE
Q 047490 257 T-DLAARGLDL-DVDHVIM 273 (323)
Q Consensus 257 t-~~~~~Gid~-~~~~vi~ 273 (323)
| ..+..++.+ ++-.+|+
T Consensus 704 THrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 704 THRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred chHhhCCCcEEecCCeEEE
Confidence 9 568888999 9998886
No 194
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=94.57 E-value=0.011 Score=55.01 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC-CCCEEEEecccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG-DCPTLVCTDLAA 261 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g-~~~ilv~t~~~~ 261 (323)
|...|..++....+.+.++++|.+-....+.+...+...+ ....+.|..+..+|+..+..|+.+++ ....+.+|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 6666777777777789999999999999999988888777 77788999999999999999997433 455788888877
Q ss_pred cc
Q 047490 262 RG 263 (323)
Q Consensus 262 ~G 263 (323)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 65
No 195
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.54 E-value=0.022 Score=54.93 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=64.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~~ 89 (323)
|.-|=|++...-||.-=++++......+|++++++..+.....+.. .-.+||.++|...| +++++.+. ...
T Consensus 179 G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vq 256 (1025)
T PRK12900 179 GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQ 256 (1025)
T ss_pred CCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhc
Confidence 4567777888899988888888888889999999976644444333 33479999999888 55555442 335
Q ss_pred CCCcEEeecchhhhh
Q 047490 90 GDIKYLVLDEADTMF 104 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~ 104 (323)
+.+.+.|+||+|.++
T Consensus 257 R~~~faIVDEvDSvL 271 (1025)
T PRK12900 257 RDFYFAIVDEVDSVL 271 (1025)
T ss_pred cCCceEEEechhhhh
Confidence 678999999999865
No 196
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.45 E-value=0.17 Score=44.27 Aligned_cols=70 Identities=10% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+..++++++..+|...+.+.+..... .......+..|..+.............++
T Consensus 28 ~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~D 85 (352)
T PF09848_consen 28 SEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKLKKSDFRKPTSFINNYSESDKEKNKYD 85 (352)
T ss_pred cccCCceEEEEecchHHHHHHHHHhhhcc----------------------cchhhhhhhhhHHHHhhcccccccCCcCC
Confidence 44577899999999998888777765430 00012345555555544332334567899
Q ss_pred EEeecchhhhhc
Q 047490 94 YLVLDEADTMFD 105 (323)
Q Consensus 94 ~vIiDE~h~~~~ 105 (323)
+|||||||++..
T Consensus 86 viivDEAqrl~~ 97 (352)
T PF09848_consen 86 VIIVDEAQRLRT 97 (352)
T ss_pred EEEEehhHhhhh
Confidence 999999999987
No 197
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.34 E-value=0.021 Score=57.89 Aligned_cols=92 Identities=21% Similarity=0.344 Sum_probs=73.3
Q ss_pred EEEEecCcccHHHHHHHHhhCC-CeeEEecCCCCH-----------HHHHHHHHhccccCCCCCEEEEecccccccCC-C
Q 047490 201 VMVFCNTLNSSRAVDHFLNENQ-ISTVNYHGEVPA-----------QERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D 267 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~-----------~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~ 267 (323)
.++|++.+..+....+.+++.. ..+..+.|.+.+ ..+.+++..|.. ..+++|++|.++.+|+|+ .
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~--~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHF--HELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhh--hhhhHHHHHHHHHhhcchhh
Confidence 3799999999988888877641 122224443332 135688999998 889999999999999999 9
Q ss_pred CCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 268 VDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 268 ~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
++.|+.++.|...+.|.|..||+.+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996643
No 198
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.83 E-value=0.26 Score=45.71 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=68.0
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHH----HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSR----AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL- 259 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~- 259 (323)
-+++.++.. .+.|.++.+.+||.-.|+ .+.++|...++.+..+.|.+....|+++++...+ |..+++|+|.+
T Consensus 299 VA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~--G~~~ivVGTHAL 375 (677)
T COG1200 299 VALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLAS--GEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhC--CCCCEEEEcchh
Confidence 344444433 356789999999966555 5556666679999999999999999999999999 99999999976
Q ss_pred cccccCC-CCCEEEE
Q 047490 260 AARGLDL-DVDHVIM 273 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~ 273 (323)
+...+++ ++-.||.
T Consensus 376 iQd~V~F~~LgLVIi 390 (677)
T COG1200 376 IQDKVEFHNLGLVII 390 (677)
T ss_pred hhcceeecceeEEEE
Confidence 5557888 8888776
No 199
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.71 E-value=0.15 Score=46.14 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=62.6
Q ss_pred hhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHH
Q 047490 4 HDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRIL 79 (323)
Q Consensus 4 ~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~ 79 (323)
...+++.......+.++||-|-|+.-+.++.+.++.. +..+..++|+....++...+ .+.+.|+|+|-
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd---- 399 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD---- 399 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc----
Confidence 3455566666667789999999999999999988875 35788999998766655444 35688999992
Q ss_pred HHHHcCCCCCCCCcEEee
Q 047490 80 QHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~vIi 97 (323)
+-...+.+.++++||=
T Consensus 400 --VAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 400 --VAARGLDVPDVDLVIN 415 (519)
T ss_pred --cccccCCCccccEEEe
Confidence 2334677888888874
No 200
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.52 Score=42.50 Aligned_cols=120 Identities=18% Similarity=0.328 Sum_probs=86.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++-++||.+-|+-.+.++.+.+.+. |+++..++++.+.-++...+ .+.++++|+- ++++ ..+.+.
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR-EGLDiP 513 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 513 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh-ccCCCc
Confidence 34689999999999887766666654 88999999998876665544 4568999998 5555 467888
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHH
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 150 (323)
.+.+|-+=+||. .||...-..++.-+.....+..+ ++|+-.-..++++.+.++.
T Consensus 514 EVsLVAIlDADK---eGFLRse~SLIQtIGRAARN~~G---kvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 514 EVSLVAILDADK---EGFLRSERSLIQTIGRAARNVNG---KVILYADKITDSMQKAIDE 567 (663)
T ss_pred ceeEEEEeecCc---cccccccchHHHHHHHHhhccCC---eEEEEchhhhHHHHHHHHH
Confidence 999998888884 45665555555544444444444 7888777777777665543
No 201
>PRK14701 reverse gyrase; Provisional
Probab=93.28 E-value=0.38 Score=50.23 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=52.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
++.+++|.+|++..+..+.+.|+.. +..+..+||+++..++.++++.+.+ |..+|+|+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN--GDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECCc
Confidence 4668999999999999998888763 4567889999999999999999988 88899999974
No 202
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.21 E-value=0.25 Score=48.20 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC--Ccc--------eEEEEeeCCcHHHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG--AKG--------KVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g--------~~~~~~~~~~~~~~~~i~~~l 318 (323)
.++.+++.+++.+|.|- ++-.++.+....|...-.|.+||+-|.. +.| .--++.+.........+++..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 57899999999999999 8888888888888888899999999954 223 123344455666777776665
Q ss_pred Hh
Q 047490 319 RK 320 (323)
Q Consensus 319 ~~ 320 (323)
+.
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 44
No 203
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=93.13 E-value=0.26 Score=49.91 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=50.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCe---eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QIS---TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~---~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
.+.+++|.+|++..|..+++.++.. +.. +..+||+++..++.+.++.+.+ |..+|+|+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN--GDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc--CCCCEEEECHH
Confidence 4679999999999999998887754 322 3358999999999999999988 88899999973
No 204
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.07 E-value=0.044 Score=42.50 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCCCEEEeChHHHHHHHHcCCC--CCCCCcEEeecchhhhhc
Q 047490 66 NPIDMVVGTPGRILQHIEDGNM--VYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 66 ~~~~Iii~Tp~~l~~~~~~~~~--~~~~~~~vIiDE~h~~~~ 105 (323)
..++|+|+++.-++.-...... ...+-.+|||||||.+.+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4479999999988654333221 123446899999998754
No 205
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=93.05 E-value=0.054 Score=52.59 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=62.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCc-cCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
|.-|-|++...-||.-=++++......+|+++++..... .... +...-.++|.++|...| +++++.+. ..
T Consensus 210 GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~v 287 (1112)
T PRK12901 210 GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLV 287 (1112)
T ss_pred CCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhh
Confidence 456777788899998888888888888899999886532 2222 22233479999999888 55555432 23
Q ss_pred CCCCcEEeecchhhhh
Q 047490 89 YGDIKYLVLDEADTMF 104 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~ 104 (323)
.+.+.+.|+||+|.++
T Consensus 288 qR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 288 QRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CcCCceeEeechhhhh
Confidence 5668999999999865
No 206
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.93 E-value=0.3 Score=45.65 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=60.5
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
++..+....+.++||.|+|+..+.++++.|... ++.+..++|+....++...+ .+..+|+|+| +.+.
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a 318 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA 318 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh
Confidence 344445566789999999999999999988765 56889999987655444332 3457899999 3333
Q ss_pred cCCCCCCCCcEEeecch
Q 047490 84 DGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~ 100 (323)
..+.+.++++||.-+.
T Consensus 319 -rGIDip~V~~VInyd~ 334 (572)
T PRK04537 319 -RGLHIDGVKYVYNYDL 334 (572)
T ss_pred -cCCCccCCCEEEEcCC
Confidence 4567888998886554
No 207
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.70 E-value=0.44 Score=44.23 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCee------EEecCCCCHHHHHHHHHhcccc--CCCCCEEEEe--cccccccCC-
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQIST------VNYHGEVPAQERVENLNKFKNE--DGDCPTLVCT--DLAARGLDL- 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~------~~~~~~~~~~~r~~~~~~f~~~--~g~~~ilv~t--~~~~~Gid~- 266 (323)
++-+++|+++.+-...+.+..++.|+-. .++..... .-+.+++.|... .|.=.+|++. ..+.+|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~--~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKD--TVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcc--cHHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 3678999999888888877776544311 11121111 145667777651 2332467665 678999999
Q ss_pred C--CCEEEEcCCCCC--------------------------------chhhhhhhcccccCCCcceEEEEeeC
Q 047490 267 D--VDHVIMFDFPLN--------------------------------SIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 267 ~--~~~vi~~~~p~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
+ +.+|+..|+|.. ....-|.+|||-|.-+.-.++++.+.
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 6 889999998841 01124999999998766666666664
No 208
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.37 E-value=0.65 Score=38.01 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=61.1
Q ss_pred CCeeEEecCCCCHHHHHHHHHhccccC--CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccc-cCCCcc
Q 047490 222 QISTVNYHGEVPAQERVENLNKFKNED--GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA-RMGAKG 297 (323)
Q Consensus 222 ~~~~~~~~~~~~~~~r~~~~~~f~~~~--g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~-R~~~~g 297 (323)
++.+..++++.+... -+|...+ +...|+|+=..+++|+.+ ++...++.-.+...+++.|+.=.-| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 467777776544322 3344311 236688999999999999 9999999999999999988875555 666677
Q ss_pred eEEEEeeCCcHHHHHH
Q 047490 298 KVTSLVAKKDVLLADR 313 (323)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (323)
.|-++.++.-......
T Consensus 185 l~Ri~~~~~l~~~f~~ 200 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRH 200 (239)
T ss_pred ceEEecCHHHHHHHHH
Confidence 8888888654443333
No 209
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.86 E-value=0.72 Score=41.35 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=51.3
Q ss_pred CeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec-------ccccccCC-
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD-------LAARGLDL- 266 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~-------~~~~Gid~- 266 (323)
.++||.||++..+-.+....++. .+.++..-|+++-..++.++..- .+|+|||+ --..++|+
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~------PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSR------PDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhC------CCEEEecchhHHHHhccCCCcccc
Confidence 58999999999887776655442 67888899999988888776543 35999997 23456667
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
++..+|.
T Consensus 327 siEVLvl 333 (691)
T KOG0338|consen 327 SIEVLVL 333 (691)
T ss_pred ceeEEEe
Confidence 6665555
No 210
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.43 E-value=2.2 Score=40.59 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.++|+..+..+.+.+... ++.+..++++.....+... -.+..+|+||| ..+. ..+.+.
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeC
Confidence 44778999999999999988888775 5677788887554332221 23457899999 3333 467788
Q ss_pred CCcEEeecchhh
Q 047490 91 DIKYLVLDEADT 102 (323)
Q Consensus 91 ~~~~vIiDE~h~ 102 (323)
++++||+-|++.
T Consensus 510 ~v~lVvi~Dadi 521 (655)
T TIGR00631 510 EVSLVAILDADK 521 (655)
T ss_pred CCcEEEEeCccc
Confidence 999998877765
No 211
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.30 E-value=0.56 Score=37.90 Aligned_cols=117 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc---------ccccCCCCCEEEeChHHHHHHHHc----CC-
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ---------EDSLNNPIDMVVGTPGRILQHIED----GN- 86 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Iii~Tp~~l~~~~~~----~~- 86 (323)
.|..+..+++....+.+..-. ........++|+...... ......+..|++.+.+.|...+.. ..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~-~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~ 88 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP-GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEI 88 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST-TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSH
T ss_pred CCcCCcHHHHHHHHHHHHhcC-CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccc
Confidence 455677788877777776652 223456788888765532 111234568999999888654322 11
Q ss_pred ----CCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 87 ----MVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 87 ----~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
..+...+++++|++|.+.... ....+..++..+.... -++|+.|..+|..+.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-------k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-------KQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-------SEEEEEESS-TTTTT
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-------CeEEEEeCCCCcccc
Confidence 136789999999999886431 2233444444443321 166666666665543
No 212
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=90.87 E-value=0.2 Score=42.31 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCEEEeChHHHHHHHHcC--CCCCCCCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIEDG--NMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~--~~~~~~~~~vIiDE~h~~~~ 105 (323)
.++|+|+++.-++.-..+. ...+ .-.++||||||.+.+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3689999999886554322 2233 467999999998653
No 213
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=90.87 E-value=0.2 Score=42.31 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCEEEeChHHHHHHHHcC--CCCCCCCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIEDG--NMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~--~~~~~~~~~vIiDE~h~~~~ 105 (323)
.++|+|+++.-++.-..+. ...+ .-.++||||||.+.+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3689999999886554322 2233 467999999998653
No 214
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.82 E-value=0.67 Score=41.63 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
+......++||.|+++..+..+.+.+.+. +.++..++|+....++...+ .+..+|+|+| +.+. ..+
T Consensus 250 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~-rGi 319 (423)
T PRK04837 250 IEEEWPDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAA-RGL 319 (423)
T ss_pred HHhcCCCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhh-cCC
Confidence 33444678999999999999988888764 56888999987665554333 4567999999 3333 456
Q ss_pred CCCCCcEEeecc
Q 047490 88 VYGDIKYLVLDE 99 (323)
Q Consensus 88 ~~~~~~~vIiDE 99 (323)
.+.++++||--+
T Consensus 320 Dip~v~~VI~~d 331 (423)
T PRK04837 320 HIPAVTHVFNYD 331 (423)
T ss_pred CccccCEEEEeC
Confidence 778888877543
No 215
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=90.44 E-value=0.63 Score=43.94 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=59.5
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
++..+...++..+||.|+|+.-+.++++.+++. ++.+..++++.....+...+ .+..+|+|+|. .+
T Consensus 227 l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~- 296 (607)
T PRK11057 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AF- 296 (607)
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hh-
Confidence 444445556778999999999999999988775 56888899887655443322 45678999993 33
Q ss_pred cCCCCCCCCcEEeecc
Q 047490 84 DGNMVYGDIKYLVLDE 99 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE 99 (323)
...+.+.++++||--.
T Consensus 297 ~~GIDip~V~~VI~~d 312 (607)
T PRK11057 297 GMGINKPNVRFVVHFD 312 (607)
T ss_pred hccCCCCCcCEEEEeC
Confidence 3467788999988533
No 216
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.30 E-value=0.66 Score=42.19 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=58.1
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHc
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~ 84 (323)
...+.......+||.|+++.-+..+++.+++. +..+..++|+....++...+ .+..+|+|+| +.+ .
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~ 303 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-A 303 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-c
Confidence 33344445568999999999999999988775 56888999987765544332 3457899999 322 3
Q ss_pred CCCCCCCCcEEeecch
Q 047490 85 GNMVYGDIKYLVLDEA 100 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~ 100 (323)
..+.+.++++||.-+.
T Consensus 304 rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 304 RGLDIKALEAVINYEL 319 (460)
T ss_pred cccchhcCCeEEEecC
Confidence 4567888888886444
No 217
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.26 E-value=0.89 Score=41.33 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=54.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
......++||.|+++.-+..+++.+... ++.+..++|+....++...+ .+..+|+|+| +.+. ..+.
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiD 310 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLD 310 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCC
Confidence 3445678999999999999988888764 56888899887655443332 3457899999 3333 4577
Q ss_pred CCCCcEEee
Q 047490 89 YGDIKYLVL 97 (323)
Q Consensus 89 ~~~~~~vIi 97 (323)
+.++++||.
T Consensus 311 ip~v~~VI~ 319 (456)
T PRK10590 311 IEELPHVVN 319 (456)
T ss_pred cccCCEEEE
Confidence 888888874
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=89.90 E-value=1.5 Score=35.86 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=48.6
Q ss_pred eEEEeecCccCCcc--ccc-----cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhh
Q 047490 47 RSTMVSGGGRLRPQ--EDS-----LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVP 118 (323)
Q Consensus 47 ~~~~~~~~~~~~~~--~~~-----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~ 118 (323)
....++|....... ... ...+..+++.+.+.+..........+.+.+++|+||+|.+.... +...+-.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 45677776654432 111 12346788888887765332212235577899999999775432 22334455544
Q ss_pred hccccCCCCCCCceEEEEEeecch
Q 047490 119 LKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
+.... +.+++|++.++
T Consensus 126 ~~~~g--------~~ilits~~~p 141 (234)
T PRK05642 126 LRDSG--------RRLLLAASKSP 141 (234)
T ss_pred HHhcC--------CEEEEeCCCCH
Confidence 43321 34566666443
No 219
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=89.86 E-value=2.8 Score=39.39 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=65.8
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEeecCccCCccccccCCC--CCEEEeChHHHHHHHHcCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQEDSLNNP--IDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~Iii~Tp~~l~~~~~~~~~ 87 (323)
+..-++-++++.+|.+..++.+.+++....... +..+....|. ...-...++ ..|.++|. ...+..
T Consensus 279 l~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe----~I~i~f~nG~kstI~FaSa------rntNsi 348 (738)
T PHA03368 279 LATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE----TISFSFPDGSRSTIVFASS------HNTNGI 348 (738)
T ss_pred HHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc----EEEEEecCCCccEEEEEec------cCCCCc
Confidence 344468999999999999999988888865532 1112222221 111122222 35666641 122334
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
.-.+++++|+|||+-+-. +.+..++..+... +.+.|++|.|-.
T Consensus 349 RGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~-------n~k~I~ISS~Ns 391 (738)
T PHA03368 349 RGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT-------NCKIIFVSSTNT 391 (738)
T ss_pred cCCcccEEEEechhhCCH----HHHHHHHHHHhcc-------CccEEEEecCCC
Confidence 455899999999997633 5556666554433 338899988854
No 220
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.52 E-value=1 Score=41.55 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=58.6
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
.+...+......++||.|.|+..+..+...++.. ++++..++|+.....+.+.+ .+..+|+|+| +..
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva 333 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA 333 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh
Confidence 3344444455557999999999999988877776 57899999998766655443 4568999999 333
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
...+...++++||=
T Consensus 334 -aRGiDi~~v~~Vin 347 (513)
T COG0513 334 -ARGLDIPDVSHVIN 347 (513)
T ss_pred -hccCCccccceeEE
Confidence 34567778877753
No 221
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=89.33 E-value=1.1 Score=40.35 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=55.2
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
......++||.|++++-+..+++.++.. ++.+..++|+....++...+ .+..+|+|+| +.+ ...+.
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~GiD 310 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-ARGID 310 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-ccCcc
Confidence 3445679999999999999999888764 56888888887665554332 3457899999 333 34567
Q ss_pred CCCCcEEee
Q 047490 89 YGDIKYLVL 97 (323)
Q Consensus 89 ~~~~~~vIi 97 (323)
+.++++||.
T Consensus 311 ip~v~~VI~ 319 (434)
T PRK11192 311 IDDVSHVIN 319 (434)
T ss_pred CCCCCEEEE
Confidence 888888874
No 222
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.30 E-value=0.89 Score=40.94 Aligned_cols=81 Identities=14% Similarity=0.346 Sum_probs=59.3
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHH
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQH 81 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~ 81 (323)
.++...+.+...|.+||.+.++.-+.-+++.|.+. ++++..++|+...++....+ .+..+|+|+|-
T Consensus 506 kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------ 575 (673)
T KOG0333|consen 506 KKLIEILESNFDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------ 575 (673)
T ss_pred HHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------
Confidence 34455566667899999999999999888888876 56899999997766554433 23579999993
Q ss_pred HHcCCCCCCCCcEEe
Q 047490 82 IEDGNMVYGDIKYLV 96 (323)
Q Consensus 82 ~~~~~~~~~~~~~vI 96 (323)
.--..+...++.+||
T Consensus 576 vAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVI 590 (673)
T ss_pred ccccCCCCCccceee
Confidence 223356778887775
No 223
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.22 E-value=1.1 Score=42.49 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=57.7
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
++...+.......+||.|+|+.-+.++++.|.+. ++.+..++|+.....+...+ .+..+|+|+| +.+
T Consensus 235 ~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~ 305 (629)
T PRK11634 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVA 305 (629)
T ss_pred HHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chH
Confidence 3444444455578999999999999999888765 56788889887655443322 3567999999 333
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
. ..+.+.++++||.
T Consensus 306 a-rGIDip~V~~VI~ 319 (629)
T PRK11634 306 A-RGLDVERISLVVN 319 (629)
T ss_pred h-cCCCcccCCEEEE
Confidence 3 3567888888875
No 224
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.81 E-value=3.1 Score=35.64 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=81.3
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
..++...+..|.+-+.+.+...++.|+++.+-.+..+-+-+++..|+.. +..+..+||+-++ .|+
T Consensus 119 ~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~--------~fr----- 185 (441)
T COG4098 119 TLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDS--------YFR----- 185 (441)
T ss_pred EEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCch--------hcc-----
Confidence 4455566788999999988888889999999999999999999999864 5788889998652 233
Q ss_pred CCEEEEecccccccCC--CCCEEEEc---CCCCCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 251 CPTLVCTDLAARGLDL--DVDHVIMF---DFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~--~~~~vi~~---~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
-+++|||.= .-+-+ .+|.+|+- ..|.+.+...|-+-+-.|.. .|..+.+...
T Consensus 186 ~plvVaTtH--QLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~-~g~~IylTAT 242 (441)
T COG4098 186 APLVVATTH--QLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK-EGATIYLTAT 242 (441)
T ss_pred ccEEEEehH--HHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcc-cCceEEEecC
Confidence 357787741 11233 35555543 36888888888876666653 3444444333
No 225
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.65 E-value=1.4 Score=40.33 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
++.+||.+|++..+......|+..+..+..++++.+..++..++..... +..+++++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~--~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD--GKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHH
Confidence 4578999999999998888899899999999999999999999888887 88899999963
No 226
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=88.58 E-value=0.83 Score=41.40 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=45.5
Q ss_pred EEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 201 VMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.||++++++.|..+.++|... ++.+..+.|+|+...++.++.+ + + .|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-~---p--~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-R---P--DIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-C---C--CEEEecc
Confidence 799999999999999998763 8899999999999988888887 2 3 3899997
No 227
>PTZ00110 helicase; Provisional
Probab=88.55 E-value=1.5 Score=40.80 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.++||.|+++.-+..+.+.++.. ++.+..++|+....++...+ .+...|+|+| +.+ ...+.+.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~-~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVA-SRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chh-hcCCCccc
Confidence 4679999999999999999888754 55788888887655543332 3456899999 333 34567888
Q ss_pred CcEEee
Q 047490 92 IKYLVL 97 (323)
Q Consensus 92 ~~~vIi 97 (323)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 888885
No 228
>PRK09401 reverse gyrase; Reviewed
Probab=88.11 E-value=1.9 Score=43.85 Aligned_cols=79 Identities=24% Similarity=0.195 Sum_probs=54.0
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CCeeE--EecCCCCHHHHHHHHHhccccCCCC
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QISTV--NYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~--~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
+.+..|...++-++.....++.+++|.+|++..+..+++.++.. +..+. ..+++++..++.+..+.+.+ +..
T Consensus 103 pTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~--~~~ 180 (1176)
T PRK09401 103 PTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE--GDF 180 (1176)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhc--CCC
Confidence 44555554322222111235679999999999999999888765 33333 34566667788888888887 888
Q ss_pred CEEEEec
Q 047490 252 PTLVCTD 258 (323)
Q Consensus 252 ~ilv~t~ 258 (323)
+|+|+|+
T Consensus 181 ~IlV~Tp 187 (1176)
T PRK09401 181 DILVTTS 187 (1176)
T ss_pred CEEEECH
Confidence 9999996
No 229
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.05 E-value=0.52 Score=45.21 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=27.7
Q ss_pred CCCEEEeChHHHHHHHHc-CCCCCC--CCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIED-GNMVYG--DIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~-~~~~~~--~~~~vIiDE~h~~~~ 105 (323)
.++|+|++..-|+..+.. ....+. ..+++||||||++.+
T Consensus 219 ~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 219 EADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 368999999988766532 222233 478899999999863
No 230
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.67 E-value=4.1 Score=36.14 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc---------ccccCCCCCEEEeChHHHHHHHH-
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ---------EDSLNNPIDMVVGTPGRILQHIE- 83 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Iii~Tp~~l~~~~~- 83 (323)
..-..--+|+.|+..++......+.+.... ..+...++|+...... ......++.++..|.+.|.+-+-
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~ 160 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK 160 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH
Confidence 344567789999999998888888776543 4578889998876542 11122345799999988753321
Q ss_pred ---cC-----CCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 84 ---DG-----NMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 84 ---~~-----~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
.+ ...+ +++++++|+++.+.... ....+-.++..+.... -|+++.|..+|.++.
T Consensus 161 a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-------kqIvltsdr~P~~l~ 223 (408)
T COG0593 161 ALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-------KQIVLTSDRPPKELN 223 (408)
T ss_pred HHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-------CEEEEEcCCCchhhc
Confidence 11 1235 89999999999887643 3344445555554432 166666666665554
No 231
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.58 E-value=6.7 Score=35.53 Aligned_cols=120 Identities=12% Similarity=0.221 Sum_probs=65.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhcc---ccceeEEEeecCccCCcc-------ccccCCCCCEEEeChHHHHHHHHc----
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISH---HARFRSTMVSGGGRLRPQ-------EDSLNNPIDMVVGTPGRILQHIED---- 84 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Iii~Tp~~l~~~~~~---- 84 (323)
--.++.|...++...+..+.+... ....+...++|+...... ......+..+++.+.+.|...+..
T Consensus 111 dnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~ 190 (445)
T PRK12422 111 ANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRS 190 (445)
T ss_pred cceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhc
Confidence 345667777777666665544221 112356778887765432 111123578899998877544321
Q ss_pred CC-----CCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 85 GN-----MVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 85 ~~-----~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
.. ..+.+.+++++||+|.+.... ....+..++..+... ..++|+.|..++..+.
T Consensus 191 ~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-------~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 191 GEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-------GKLIVISSTCAPQDLK 250 (445)
T ss_pred chHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-------CCcEEEecCCCHHHHh
Confidence 11 125678999999999876432 223333444333221 1145555545554443
No 232
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.88 E-value=2.5 Score=38.07 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCeEEEEecCcccHHHHHHHH----hhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc------cccccCC-
Q 047490 198 GNKVMVFCNTLNSSRAVDHFL----NENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL------AARGLDL- 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~------~~~Gid~- 266 (323)
+.=.+|.|+++..|..+.... +..++.+..+||+.+..++..-++ . | ..|+|||+- --.++|+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~--g-~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E--G-AEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c--C-CeEEEechHHHHHHHHhhcccce
Confidence 344578899999888876544 445889999999999888776665 2 2 248999971 1236788
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
+++.+++
T Consensus 370 rvS~LV~ 376 (731)
T KOG0339|consen 370 RVSYLVL 376 (731)
T ss_pred eeeEEEE
Confidence 8887776
No 233
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=86.53 E-value=1.4 Score=29.69 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
+...++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 35678999999987888889999999888888999875
No 234
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.14 E-value=2.1 Score=39.12 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=55.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.+......++||.|+++.-+..+.+.+.+. ++.+..++|+.....+...+ .+...|+|+| +.+. ..
T Consensus 329 ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~-~G 398 (475)
T PRK01297 329 LVTQNPWERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAG-RG 398 (475)
T ss_pred HHHhcCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cC
Confidence 334455679999999999988888877654 56788888876655543332 3457899999 3333 45
Q ss_pred CCCCCCcEEeecc
Q 047490 87 MVYGDIKYLVLDE 99 (323)
Q Consensus 87 ~~~~~~~~vIiDE 99 (323)
+.+.++++||.-.
T Consensus 399 IDi~~v~~VI~~~ 411 (475)
T PRK01297 399 IHIDGISHVINFT 411 (475)
T ss_pred CcccCCCEEEEeC
Confidence 7788899888644
No 235
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.11 E-value=2.5 Score=39.94 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
++.++|.+|....++.-...|+..+..+..+|++++..++..++..... |..++++.|+-
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~--~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVN--GELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEEChh
Confidence 4578999999998888888888899999999999999999999999888 88999988853
No 236
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=86.06 E-value=1.6 Score=35.23 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeE--EEeecCccCCcc-----cc---ccCCCCCEEEeChHHHHHH
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRS--TMVSGGGRLRPQ-----ED---SLNNPIDMVVGTPGRILQH 81 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~-----~~---~~~~~~~Iii~Tp~~l~~~ 81 (323)
.+++.-+.++|| ++|..|....+++.+... +-++ ..+.-....... .+ .......|+++||+.+..+
T Consensus 67 Adg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 67 ADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred cCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 344557777777 789999999998887543 1112 222222222111 00 1112347999999999655
No 237
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=86.01 E-value=3.2 Score=29.84 Aligned_cols=76 Identities=11% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.+++..-+.++.+.+++. +..+..++|+......... + .+...|+++|.. ....+.+..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcChhh
Confidence 4678999999999999999888872 4567788887654332222 2 334579998842 223455667
Q ss_pred CcEEeecchh
Q 047490 92 IKYLVLDEAD 101 (323)
Q Consensus 92 ~~~vIiDE~h 101 (323)
.+.+|+.+..
T Consensus 97 ~~~vi~~~~~ 106 (131)
T cd00079 97 VSVVINYDLP 106 (131)
T ss_pred CCEEEEeCCC
Confidence 7777776664
No 238
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=85.77 E-value=5.7 Score=30.10 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=59.3
Q ss_pred eEEeccCChhHHHHHHHHhcc-CCC-CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHH-HHHHHHHhcc
Q 047490 173 DFIKLSGSENKLEALLQVLEP-SLS-KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQ-ERVENLNKFK 245 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~-~~~-~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~-~r~~~~~~f~ 245 (323)
.....+.+..|.....-.+.. ..+ +..++++.+|+...++...+.+... +..+..++++.+.. +....+
T Consensus 17 ~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 92 (169)
T PF00270_consen 17 VLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---- 92 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----
T ss_pred EEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----
Confidence 344555566666544422222 212 3359999999999999998877654 45778889988744 333333
Q ss_pred ccCCCCCEEEEecc-c----c-cccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-A----A-RGLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-~----~-~Gid~-~~~~vi~ 273 (323)
. +...|+|+|.. + . ...++ +++.+|+
T Consensus 93 ~--~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 93 S--NQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp H--TTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred c--ccccccccCcchhhccccccccccccceeecc
Confidence 3 66779999962 1 1 12456 6776665
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.50 E-value=2.8 Score=34.29 Aligned_cols=73 Identities=3% Similarity=-0.072 Sum_probs=38.0
Q ss_pred eEEEeecCccCCccc-------cccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhh
Q 047490 47 RSTMVSGGGRLRPQE-------DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVP 118 (323)
Q Consensus 47 ~~~~~~~~~~~~~~~-------~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~ 118 (323)
....++|.......- .....+..+.+.+.+........-...+.+++++++||+|.+.... +...+..++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~ 125 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNR 125 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHH
Confidence 566777766554321 1112345677777665433222111123456899999999875422 22334444444
Q ss_pred h
Q 047490 119 L 119 (323)
Q Consensus 119 ~ 119 (323)
+
T Consensus 126 ~ 126 (235)
T PRK08084 126 I 126 (235)
T ss_pred H
Confidence 4
No 240
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=85.19 E-value=2 Score=29.57 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..+++++|.+-..+...+..|+..|+.+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35679999999988889999999999998888888875
No 241
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.84 E-value=1.8 Score=41.15 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=52.3
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCC--------EEEEcCCCCCchhhhhhhcccccCCC-cce-EEEEeeC--Cc
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVD--------HVIMFDFPLNSIDYLHRTGRTARMGA-KGK-VTSLVAK--KD 307 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~~~-~g~-~~~~~~~--~~ 307 (323)
-++|.. |+..|-|-+.+...||.+ .=. .=|-..+|||.+.-+|..||.+|..+ .+. .+.+++. .+
T Consensus 850 KqrFM~--GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMD--GEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcc--ccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 457777 888888888999999998 322 23456899999999999999999875 232 2333332 45
Q ss_pred HHHHHHHHHHH
Q 047490 308 VLLADRIEEAI 318 (323)
Q Consensus 308 ~~~~~~i~~~l 318 (323)
.....-+.+-|
T Consensus 928 rRFAS~VAKRL 938 (1300)
T KOG1513|consen 928 RRFASIVAKRL 938 (1300)
T ss_pred hHHHHHHHHHH
Confidence 55544444443
No 242
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.54 E-value=3.1 Score=38.05 Aligned_cols=85 Identities=9% Similarity=0.263 Sum_probs=63.4
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...-.|.+||-+-+.+.+.|+..++.. ..++++..++|+.......+.+ .+...++||| +++.
T Consensus 378 ~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~ 449 (593)
T KOG0344|consen 378 LRQLVASGFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLA 449 (593)
T ss_pred HHHHHhccCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhh
Confidence 34445555678999999999999999998872 3478999999986554433322 3446799999 6666
Q ss_pred cCCCCCCCCcEEeecchh
Q 047490 84 DGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h 101 (323)
++ +.+.++++||-++.-
T Consensus 450 RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 450 RG-IDFKGVNLVINYDFP 466 (593)
T ss_pred cc-ccccCcceEEecCCC
Confidence 65 788999999997775
No 243
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=84.17 E-value=1.4 Score=34.16 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=38.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
..+++|-+|+.+=++.+.+.+..-....+.+....... ........++..|-+..|+.+... ....+++|
T Consensus 26 ~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~-------~~~~Dlli 95 (177)
T PF05127_consen 26 KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQRIEFVAPDELLAE-------KPQADLLI 95 (177)
T ss_dssp ---EEEE-SS--S-HHHHHCC-----------------------------CCC--B--HHHHCCT-----------SCEE
T ss_pred CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccceEEEECCHHHHhC-------cCCCCEEE
Confidence 36899999999988877776655544333222000000 000011112356777777755432 22458999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
||||=.+ --+.+..++... ..+++|.|..
T Consensus 96 VDEAAaI----p~p~L~~ll~~~------------~~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAI----PLPLLKQLLRRF------------PRVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHHCCS------------SEEEEEEEBS
T ss_pred EechhcC----CHHHHHHHHhhC------------CEEEEEeecc
Confidence 9999754 224444544322 5677888874
No 244
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.16 E-value=6.6 Score=30.99 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=48.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----cccc-cCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----AARG-LDL 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~~~G-id~ 266 (323)
.+.++++.+++...+....+.++.. +..+..++|+.+...... .+. +...|+|+|+. +..+ .++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~iiv~T~~~l~~~l~~~~~~~ 141 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR---KLK---RGPHIVVATPGRLLDLLERGKLDL 141 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc---CCCCEEEEChHHHHHHHHcCCCCh
Confidence 4568999999999888887766554 667788899887655432 222 44579999952 2222 456
Q ss_pred -CCCEEEEc
Q 047490 267 -DVDHVIMF 274 (323)
Q Consensus 267 -~~~~vi~~ 274 (323)
+++.+|.=
T Consensus 142 ~~l~~lIvD 150 (203)
T cd00268 142 SKVKYLVLD 150 (203)
T ss_pred hhCCEEEEe
Confidence 67776653
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.86 E-value=1.4 Score=37.19 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEE
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~s 137 (323)
-.++++||||+|.++... ....+..+..++...... ++.+|+++
T Consensus 144 ~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL---~ipiV~vG 187 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNEL---QIPIVGVG 187 (302)
T ss_pred cCCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhcc---CCCeEEec
Confidence 357999999999987743 333444444444433222 44677663
No 246
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=83.75 E-value=4.4 Score=37.10 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=26.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHH 43 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 43 (323)
..+++.+++.+++++-+..+.+.++.+...
T Consensus 51 g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 355789999999999999999999998765
No 247
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=83.67 E-value=16 Score=35.09 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc---c-cCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED---S-LNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.+++|.|+|+..+..+.+.+... ++.+..++|+.....+.. . ..+..+|+|+| ..+. ..+.+..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~-rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHh-CCccccC
Confidence 4778999999999988888877664 678888888755332222 1 23457889988 3333 4677889
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
++++|+=|++.
T Consensus 515 v~lVii~d~ei 525 (652)
T PRK05298 515 VSLVAILDADK 525 (652)
T ss_pred CcEEEEeCCcc
Confidence 99988877764
No 248
>PTZ00424 helicase 45; Provisional
Probab=83.58 E-value=2.9 Score=37.23 Aligned_cols=77 Identities=9% Similarity=0.163 Sum_probs=54.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
......++||.|+++.-+..+.+.+... +..+..++|+....++...+ .+..+|+|+| +. -...+.
T Consensus 263 ~~~~~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT-----~~-l~~GiD 332 (401)
T PTZ00424 263 ETLTITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT-----DL-LARGID 332 (401)
T ss_pred HhcCCCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEc-----cc-ccCCcC
Confidence 3344568999999999988888877664 56788899987655443322 3457999999 32 234567
Q ss_pred CCCCcEEeecc
Q 047490 89 YGDIKYLVLDE 99 (323)
Q Consensus 89 ~~~~~~vIiDE 99 (323)
+.++++||.-+
T Consensus 333 ip~v~~VI~~~ 343 (401)
T PTZ00424 333 VQQVSLVINYD 343 (401)
T ss_pred cccCCEEEEEC
Confidence 88888888533
No 249
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.15 E-value=5.9 Score=31.93 Aligned_cols=75 Identities=7% Similarity=0.017 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccccceeEEEeecCccCCccc--cc-----cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhh
Q 047490 31 EQVFRVAKSISHHARFRSTMVSGGGRLRPQE--DS-----LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 31 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~ 103 (323)
.+..+.++++.....-....++|........ .. ...+..+++.+...+..........+...+++|+||+|.+
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l 102 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAI 102 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhh
Confidence 3344445554322234566777766554321 11 1123456666655443221111112345679999999987
Q ss_pred hc
Q 047490 104 FD 105 (323)
Q Consensus 104 ~~ 105 (323)
..
T Consensus 103 ~~ 104 (226)
T TIGR03420 103 AG 104 (226)
T ss_pred cC
Confidence 54
No 250
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.32 E-value=6.6 Score=35.46 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=52.9
Q ss_pred CeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCH-HHHHHHHHhccccCCCCCEEEEecc-------cccccCC
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPA-QERVENLNKFKNEDGDCPTLVCTDL-------AARGLDL 266 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~-~~r~~~~~~f~~~~g~~~ilv~t~~-------~~~Gid~ 266 (323)
-+++|.++++..+-.++.-|... |..|+.+.|.-+- .+..+....... .+++|||+|+- ...|+++
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~--~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE--CRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc--cccceEEcCchHHHHhccCCCCcch
Confidence 58899999999999999888765 5566666665442 233333444443 67789999972 3568888
Q ss_pred -CCCEEEEcC
Q 047490 267 -DVDHVIMFD 275 (323)
Q Consensus 267 -~~~~vi~~~ 275 (323)
++..+|+-.
T Consensus 294 k~LrfLVIDE 303 (620)
T KOG0350|consen 294 KHLRFLVIDE 303 (620)
T ss_pred hhceEEEech
Confidence 888877743
No 251
>PRK06893 DNA replication initiation factor; Validated
Probab=82.31 E-value=5.5 Score=32.38 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=43.9
Q ss_pred eEEEeecCccCCcc--c-----cccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhh
Q 047490 47 RSTMVSGGGRLRPQ--E-----DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVP 118 (323)
Q Consensus 47 ~~~~~~~~~~~~~~--~-----~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~ 118 (323)
....++|....... . .....+..+.+.+..............+.+.+++++||+|.+.... +...+..++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~ 119 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNR 119 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence 34567776654432 0 1111234556666543322111111135678999999999875322 22233344444
Q ss_pred hccccCCCCCCCceEEEEEeecchh
Q 047490 119 LKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
.... +-+++++|++.++.
T Consensus 120 ~~~~-------~~~illits~~~p~ 137 (229)
T PRK06893 120 IKEQ-------GKTLLLISADCSPH 137 (229)
T ss_pred HHHc-------CCcEEEEeCCCChH
Confidence 4321 11466777766443
No 252
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=82.20 E-value=13 Score=35.38 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=55.1
Q ss_pred ccCChhHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 177 LSGSENKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 177 ~~~~~~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...++.|.-.. +..+.. ...+.+++|.++|...|...++.+.. .+..+..+.|++++.+++.. -.+
T Consensus 123 ~~TGeGKTla~~lp~~~~-al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~--------y~~ 193 (656)
T PRK12898 123 MQTGEGKTLTATLPAGTA-ALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAA--------YGA 193 (656)
T ss_pred eeCCCCcHHHHHHHHHHH-hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHH--------cCC
Confidence 34455554333 333322 23578999999999998877776654 58899999999987655431 234
Q ss_pred CEEEEecccccccCC-CCC
Q 047490 252 PTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~-~~~ 269 (323)
+|+++|.. +-|+|. .=.
T Consensus 194 dIvygT~~-e~~FDyLrd~ 211 (656)
T PRK12898 194 DITYCTNK-ELVFDYLRDR 211 (656)
T ss_pred CEEEECCC-chhhhhcccc
Confidence 68888875 567887 443
No 253
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=82.15 E-value=3.1 Score=36.46 Aligned_cols=74 Identities=9% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
+.++.++||.++|..-+..+++.+++.. .+..+..++|......+.+.. ..+|+|+|. .+.+ .+.++..
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~r-GiDi~~~- 337 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDV-GVDFKRD- 337 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhc-ccCCCCc-
Confidence 3456789999999999999999998753 234566777776554443332 468999993 3443 3444444
Q ss_pred EEeec
Q 047490 94 YLVLD 98 (323)
Q Consensus 94 ~vIiD 98 (323)
.+|+|
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56664
No 254
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=81.71 E-value=20 Score=34.89 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=46.4
Q ss_pred CeEEEEecCcccHHHHHHHHhhC-------CCeeEEecCCCCHHHHHHHHHhccc------cCCCCCEEEEecccccccC
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN-------QISTVNYHGEVPAQERVENLNKFKN------EDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~------~~g~~~ilv~t~~~~~Gid 265 (323)
..+|+|.++-..-+.+..+.+.. ...- ++.+.-++.+-.+++..|.+ ..|..-+.||=....+|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 45999999987666664443321 1111 22222244444555555554 1234344566678899999
Q ss_pred C-C--CCEEEEcCCC
Q 047490 266 L-D--VDHVIMFDFP 277 (323)
Q Consensus 266 ~-~--~~~vi~~~~p 277 (323)
+ + ...||..|.|
T Consensus 641 FsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLP 655 (945)
T ss_pred ccccCCceeEEecCC
Confidence 9 5 7789999987
No 255
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=81.53 E-value=5.2 Score=29.57 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=45.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccc
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARG 263 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~G 263 (323)
...+..++...+..|.+++|+|++...++.+-+.|=.......+=|+-.... .. ....|+|+++...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~--~~~PV~i~~~~~~-- 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PA--ARQPVLITWDQEA-- 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------ST--T--SEEEE-TTS---
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CC--CCCeEEEecCccc--
Confidence 4666677777777899999999999999999998866655556666543211 11 3357999987643
Q ss_pred cCC-CCCEEEEcCCC
Q 047490 264 LDL-DVDHVIMFDFP 277 (323)
Q Consensus 264 id~-~~~~vi~~~~p 277 (323)
-.. ..+.+|+.+..
T Consensus 82 ~~~~~~~vLinL~~~ 96 (137)
T PF04364_consen 82 NPNNHADVLINLSGE 96 (137)
T ss_dssp ---S--SEEEE--SS
T ss_pred CCCCCCCEEEECCCC
Confidence 122 37888887643
No 256
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.13 E-value=15 Score=34.18 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCCCCEEEeChHHHHHHHHcC---CCC---CCCCcE-Eeecchhhhhc
Q 047490 65 NNPIDMVVGTPGRILQHIEDG---NMV---YGDIKY-LVLDEADTMFD 105 (323)
Q Consensus 65 ~~~~~Iii~Tp~~l~~~~~~~---~~~---~~~~~~-vIiDE~h~~~~ 105 (323)
+++..|.++|.+.+...+.+. ... +.+..+ ++-||+|++..
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 456789999999998777543 222 333444 47899999864
No 257
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=81.02 E-value=1.9 Score=28.96 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=34.2
Q ss_pred cEEEEcCCHHHHHHHH-HHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH
Q 047490 19 RAVVLCPTRELSEQVF-RVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l 78 (323)
++|++|++=--...+. ..+++.+...++.+....+. ........+++|++++||+--
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~---~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS---ILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE---TTTHHHHHTT-SEEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec---ccccccccCCCcEEEEcCccc
Confidence 4788887654444444 66666666667666666555 112223344589999999744
No 258
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=80.86 E-value=5.4 Score=38.48 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC--Ccce-----------EEEEeeCCcHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG--AKGK-----------VTSLVAKKDVLLADRIE 315 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g~-----------~~~~~~~~~~~~~~~i~ 315 (323)
.++.+++..++.+|.|= ++-.++-.....|...=.|-+||.-|.. +.|. -.+++...+....+.++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 46789999999999999 8988999888888888899999999954 3342 33466677788888888
Q ss_pred HHHHhcC
Q 047490 316 EAIRKNE 322 (323)
Q Consensus 316 ~~l~~~~ 322 (323)
+...+++
T Consensus 563 kEI~~~s 569 (985)
T COG3587 563 KEINDES 569 (985)
T ss_pred HHHHHhh
Confidence 7766543
No 259
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=80.78 E-value=11 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
....+++|+||+..+. ...+..++..+... +.++|++.-+
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~-------~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKS-------GAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T--------T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhc-------CCEEEEECCc
Confidence 4556799999998763 24555566555442 2266666554
No 260
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=80.57 E-value=4.7 Score=37.38 Aligned_cols=72 Identities=11% Similarity=0.278 Sum_probs=52.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+++||.++++.-+..+.+.+... .++++..++|+....++...+ .+..+|+|+|. .+. ..+.+.++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v 437 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRV 437 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccC
Confidence 467999999999998888877653 256788899887665544333 35678999993 333 35678889
Q ss_pred cEEee
Q 047490 93 KYLVL 97 (323)
Q Consensus 93 ~~vIi 97 (323)
++||.
T Consensus 438 ~~VI~ 442 (518)
T PLN00206 438 RQVII 442 (518)
T ss_pred CEEEE
Confidence 88885
No 261
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=80.36 E-value=17 Score=33.06 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=58.5
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC--------cccccc----CCCCCEEEeChHH
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR--------PQEDSL----NNPIDMVVGTPGR 77 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~Iii~Tp~~ 77 (323)
..+.+..+.++||.+..++-+..+.+.+.+.+.... +.+.|..+.. .+...+ ++.++++|+|
T Consensus 359 e~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~---~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaT--- 432 (542)
T COG1111 359 EQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR---VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVAT--- 432 (542)
T ss_pred HHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce---eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEc---
Confidence 344566678999999999999999999998865432 3555533222 122211 4568999999
Q ss_pred HHHHHHcCCCCCCCCcEEeecchh
Q 047490 78 ILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 78 l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
.+-...+....+++||+=|+=
T Consensus 433 ---SVgEEGLDIp~vDlVifYEpv 453 (542)
T COG1111 433 ---SVGEEGLDIPEVDLVIFYEPV 453 (542)
T ss_pred ---ccccccCCCCcccEEEEecCC
Confidence 244567889999999997773
No 262
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=80.14 E-value=8.2 Score=25.65 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=29.7
Q ss_pred cEEEEcCCHH-HHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChH
Q 047490 19 RAVVLCPTRE-LSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 19 ~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
+++++||+-- ...-+...++++++..++....-..+.. +. ...++|++++|..
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~--~~---~~~~~DlIisT~~ 54 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLG--SA---KASSADIIVTSKD 54 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccc--cc---CCCCCCEEEEchh
Confidence 4789998733 4444455677766555544333222211 11 1345899999974
No 263
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=79.56 E-value=4 Score=40.01 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=54.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC----CCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN----NPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+..+||.+|+..-+.++.+.+++... .++.+..++|+....++...+. +...|+|+| +.. ..++.+.++
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT-----nIA-ErgItIp~V 281 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT-----NIA-ETSLTIEGI 281 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec-----chH-hhcccccCc
Confidence 56899999999999999999987432 3678999999988766655542 235799999 333 345667788
Q ss_pred cEEee
Q 047490 93 KYLVL 97 (323)
Q Consensus 93 ~~vIi 97 (323)
++||=
T Consensus 282 ~~VID 286 (819)
T TIGR01970 282 RVVID 286 (819)
T ss_pred eEEEE
Confidence 76654
No 264
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=79.53 E-value=7.3 Score=25.31 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=33.0
Q ss_pred cEEEEcCCH-HHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChH
Q 047490 19 RAVVLCPTR-ELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 19 ~~lvl~P~~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
+++++|++- ....-+...+++.++..++....-..+... . ....+++++++|+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~--~--~~~~~~dliitt~~ 55 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSE--V--IDLADADLIISTVP 55 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccch--h--hhcCCccEEEECCc
Confidence 478889877 566666777777776655543332222111 0 23345799999985
No 265
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=79.17 E-value=4.7 Score=38.58 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=67.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeec----CccCCccccccCCCCCEEEeChHHHHHHHHcC-CCC---
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG----GGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMV--- 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~--- 88 (323)
.+++|++.-+..|-.+..+.++..+. .++.+..+.- ..+.+ ..... .-.|+++|+..|.--.+.. ...
T Consensus 318 RKrAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~-en~n~--krGViFaTYtaLIGEs~~~~~kyrtR 393 (1300)
T KOG1513|consen 318 RKRALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSK-ENTNT--KRGVIFATYTALIGESQGKGGKYRTR 393 (1300)
T ss_pred cceeEEEEeccccccchhhchhhcCC-CCccceehhhccccccccc-ccCCc--cceeEEEeeHhhhhhccccCchHHHH
Confidence 45899999999998888888888764 3455544421 11110 01111 1269999998874332211 100
Q ss_pred --------CCCC-cEEeecchhhhhc-----CC----ChhhHHHHHhhhccccCCCCCCCceEEEEEeec---chhhHHH
Q 047490 89 --------YGDI-KYLVLDEADTMFD-----RG----FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM---TKAVQKL 147 (323)
Q Consensus 89 --------~~~~-~~vIiDE~h~~~~-----~~----~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~---~~~~~~~ 147 (323)
-.++ .+|||||||.--+ .+ .+..+..+-..++.. +++..|||- |..+.++
T Consensus 394 ~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~A---------RVVYASATGAsEPrNMaYM 464 (1300)
T KOG1513|consen 394 FRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNA---------RVVYASATGASEPRNMAYM 464 (1300)
T ss_pred HHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCc---------eEEEeeccCCCCcchhhhh
Confidence 1112 5799999998533 11 233344444444433 899999985 4444444
Q ss_pred H
Q 047490 148 V 148 (323)
Q Consensus 148 ~ 148 (323)
+
T Consensus 465 ~ 465 (1300)
T KOG1513|consen 465 V 465 (1300)
T ss_pred h
Confidence 3
No 266
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=79.01 E-value=17 Score=27.00 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...+...+..++...+..|.+++|+|++...++.+-+.|=.......+=|+-.+.. .. ....|+|+...
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~--~~~PV~l~~~~ 79 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PA--AGQPVLLTWPG 79 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CC--CCCCEEEEcCC
Confidence 45577778888888888899999999999999999888865555556667643311 01 34578887311
Q ss_pred cccccCC-CCCEEEEcCC
Q 047490 260 AARGLDL-DVDHVIMFDF 276 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~ 276 (323)
.-+. ..+.+|+.+.
T Consensus 80 ---~~~~~~~~~LinL~~ 94 (142)
T PRK05728 80 ---KRNANHRDLLINLDG 94 (142)
T ss_pred ---CCCCCCCcEEEECCC
Confidence 1234 5667787763
No 267
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.96 E-value=1.1 Score=43.13 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHh
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSI 40 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~ 40 (323)
.++++|.+.|..=..|..++++..
T Consensus 60 ~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 60 VRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cccEEEEcccchHHHHHHHHHHhh
Confidence 468899999998888888888884
No 268
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=78.95 E-value=5.7 Score=26.64 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=30.0
Q ss_pred cEEEEcCCHH-HHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChH
Q 047490 19 RAVVLCPTRE-LSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 19 ~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
+++++||+-- ...-+...+++.++..++....-..... +... ...++|++++|++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~--~~~~-~~~~~Dliist~~ 57 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIA--EVPS-LLDDADLIVSTTK 57 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHH--Hhhc-ccCCCcEEEEcCC
Confidence 6889998733 4445566666666555543322111111 1111 2346899999975
No 269
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.71 E-value=12 Score=32.70 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=50.2
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-------cccccCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-------AARGLDL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-------~~~Gid~ 266 (323)
...++|.+|+++.|..+++.+... |..+..+-|+++... .....+++ ..|+|||+- -..|+++
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~--q~~~L~kk----PhilVaTPGrL~dhl~~Tkgf~l 202 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML--QANQLSKK----PHILVATPGRLWDHLENTKGFSL 202 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH--HHHHhhcC----CCEEEeCcHHHHHHHHhccCccH
Confidence 357999999999999999998875 667788899988433 33444444 458999972 1456776
Q ss_pred -CCCEEEE
Q 047490 267 -DVDHVIM 273 (323)
Q Consensus 267 -~~~~vi~ 273 (323)
.+.++|.
T Consensus 203 e~lk~LVl 210 (476)
T KOG0330|consen 203 EQLKFLVL 210 (476)
T ss_pred HHhHHHhh
Confidence 6665543
No 270
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=78.63 E-value=4 Score=27.48 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+..++..|+..|+. +..+.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 46679999999988999999999998887 788888864
No 271
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=78.15 E-value=6.6 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCCCCeEEEEec-CcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 195 LSKGNKVMVFCN-TLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 195 ~~~~~~~lvf~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
..+..++++||. +-..+..++..|+..|+.+..+.|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 356789999997 456677788888888998888999875
No 272
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=77.78 E-value=4.5 Score=27.52 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3567899999998888888888988887 5777888764
No 273
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=77.53 E-value=5.4 Score=39.11 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=54.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC----CCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN----NPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+..+||.+|+..-+.++.+.+++... .++.+..++|+....++...+. +...|+|+|. .. ..++.+.+
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IA-ErsLtIp~ 283 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IA-ETSLTIEG 283 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hH-HhcccccC
Confidence 356899999999999999999987432 2578889999977765554442 2357999993 33 34567888
Q ss_pred CcEEee
Q 047490 92 IKYLVL 97 (323)
Q Consensus 92 ~~~vIi 97 (323)
+++||=
T Consensus 284 V~~VID 289 (812)
T PRK11664 284 IRLVVD 289 (812)
T ss_pred ceEEEE
Confidence 887763
No 274
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=77.51 E-value=3.4 Score=38.63 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=31.0
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG 54 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 54 (323)
++.+.....+||.+|+.--++|+++.+.+- ++++..+...
T Consensus 448 hl~~~~~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~ak 487 (935)
T KOG1802|consen 448 HLARQHAGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAK 487 (935)
T ss_pred HHHHhcCCceEEEcccchhHHHHHHHHHhc----CceEeeeehh
Confidence 344445778999999999999999999876 5677766554
No 275
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=77.51 E-value=9.7 Score=34.57 Aligned_cols=99 Identities=7% Similarity=0.042 Sum_probs=54.4
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc------cc---ccCCCCCEEEeChHHHHHHHHcC------
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ------ED---SLNNPIDMVVGTPGRILQHIEDG------ 85 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~Iii~Tp~~l~~~~~~~------ 85 (323)
.++.|....+...+..+.+.. ....+...++|+...... .. ....+..+++.|++.|...+...
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~-~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~ 195 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNP-GISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHK 195 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCc-CcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhh
Confidence 455666666655554443321 112355678887665432 11 11234678888888876544221
Q ss_pred C-----CCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhc
Q 047490 86 N-----MVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLK 120 (323)
Q Consensus 86 ~-----~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~ 120 (323)
. ..+.+.+++|+||+|.+.... ....+..++..+.
T Consensus 196 ~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 196 EIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred HHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 0 125678999999999775321 2234444444444
No 276
>PRK13767 ATP-dependent helicase; Provisional
Probab=76.91 E-value=6.2 Score=39.19 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=54.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc--cceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH--ARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
+..+||.|+|+..+..++..++..... .+..+...+|+.....+... + .+...|+|||.. +. ..+.+.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le-~GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LE-LGIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HH-hcCCCC
Confidence 567999999999999999999886442 23467778888665544332 2 345789999942 32 356688
Q ss_pred CCcEEeecc
Q 047490 91 DIKYLVLDE 99 (323)
Q Consensus 91 ~~~~vIiDE 99 (323)
++++||.-.
T Consensus 358 ~Vd~VI~~~ 366 (876)
T PRK13767 358 YIDLVVLLG 366 (876)
T ss_pred CCcEEEEeC
Confidence 888888643
No 277
>PRK02362 ski2-like helicase; Provisional
Probab=76.74 E-value=5.4 Score=38.81 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=58.2
Q ss_pred eeEEeccCChhHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 172 HDFIKLSGSENKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
......+.+..|.... +.++... ..++++++.+|++..|.+..+.++.. +..+..++|+.+.... +.
T Consensus 41 nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~------~l-- 111 (737)
T PRK02362 41 NLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE------WL-- 111 (737)
T ss_pred cEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc------cc--
Confidence 3445556666666443 2333322 35679999999999999998888765 7788889998764321 11
Q ss_pred CCCCCEEEEec-----cccccc-CC-CCCEEEE
Q 047490 248 DGDCPTLVCTD-----LAARGL-DL-DVDHVIM 273 (323)
Q Consensus 248 ~g~~~ilv~t~-----~~~~Gi-d~-~~~~vi~ 273 (323)
+..+|+|+|+ .+..+. .+ +++.+|.
T Consensus 112 -~~~~IiV~Tpek~~~llr~~~~~l~~v~lvVi 143 (737)
T PRK02362 112 -GDNDIIVATSEKVDSLLRNGAPWLDDITCVVV 143 (737)
T ss_pred -CCCCEEEECHHHHHHHHhcChhhhhhcCEEEE
Confidence 3456999995 222222 24 5666665
No 278
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=76.49 E-value=3.3 Score=32.84 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=30.1
Q ss_pred CCCEEEeChHHHHHHHHcCCCCCCCCcEEeecch
Q 047490 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~ 100 (323)
...+-|+||+++..+.....+..+.+.++|+|=.
T Consensus 196 ~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 196 VVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred ceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 4678999999999999998899999999999844
No 279
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=76.43 E-value=5.5 Score=27.02 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=30.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
++.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3568999999987888888889888988777888864
No 280
>PRK08727 hypothetical protein; Validated
Probab=76.33 E-value=9.4 Score=31.14 Aligned_cols=59 Identities=8% Similarity=-0.020 Sum_probs=34.7
Q ss_pred eEEEeecCccCCcc-------ccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhc
Q 047490 47 RSTMVSGGGRLRPQ-------EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 47 ~~~~~~~~~~~~~~-------~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 105 (323)
....++|....... ......+..+++.+.+.+...+......+.+.+++|+||+|.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccC
Confidence 45777777665432 111223456667666655443322222356788999999998764
No 281
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=76.20 E-value=2.2 Score=41.03 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=28.2
Q ss_pred cCCCCCEEEeChHHHHHHHHcCC--CCCCCCcEEeecchhhhh
Q 047490 64 LNNPIDMVVGTPGRILQHIEDGN--MVYGDIKYLVLDEADTMF 104 (323)
Q Consensus 64 ~~~~~~Iii~Tp~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~ 104 (323)
+..+++||++-+.-+.+-..+.. +.+.+ ..||+||||.+-
T Consensus 219 l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiE 260 (945)
T KOG1132|consen 219 LKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIE 260 (945)
T ss_pred hcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHH
Confidence 34557999999987776665544 23322 479999999974
No 282
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=76.10 E-value=1.2 Score=36.01 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHH
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKS 39 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~ 39 (323)
..++.++|+++|+..-++++.+.+.+
T Consensus 50 ~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 50 ADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp CCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred hhccccceeecCCchhHHHHHHHHHh
Confidence 56688999999999999999999988
No 283
>COG1204 Superfamily II helicase [General function prediction only]
Probab=75.67 E-value=9 Score=37.27 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=62.7
Q ss_pred eeEEeccCChhHHH-HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHh---hCCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 172 HDFIKLSGSENKLE-ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN---ENQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 172 ~~~~~~~~~~~k~~-~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
+..+..+....|.. .++.++....+.+.|++-.||.+..|++.++.++ ..|+++..++|+++..... -
T Consensus 49 N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~------l-- 120 (766)
T COG1204 49 NVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDER------L-- 120 (766)
T ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhh------h--
Confidence 44555565666654 4444554443446899999999999999999888 6799999999998733321 1
Q ss_pred CCCCCEEEEec----cccc-ccC-C-CCCEEEE
Q 047490 248 DGDCPTLVCTD----LAAR-GLD-L-DVDHVIM 273 (323)
Q Consensus 248 ~g~~~ilv~t~----~~~~-Gid-~-~~~~vi~ 273 (323)
++.+|+|+|+ .+.+ ..+ + .++.||.
T Consensus 121 -~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvVi 152 (766)
T COG1204 121 -ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVI 152 (766)
T ss_pred -ccCCEEEEchHHhhHhhhcCcchhhcccEEEE
Confidence 6778999995 1222 222 3 5777665
No 284
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=75.59 E-value=19 Score=33.67 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 85 GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
+...-++++++++||||-+ ..+.+..++..+... +.+.|+.|.|-+
T Consensus 293 NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~-------~~KiIfISS~Ns 338 (668)
T PHA03372 293 NSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQN-------TTKIIFISSTNT 338 (668)
T ss_pred ccccCCCCCEEEEehhhcc----CHHHHHHhhhhhccc-------CceEEEEeCCCC
Confidence 4556678999999999954 446677777777654 348888888753
No 285
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=75.24 E-value=9.7 Score=38.51 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
++.+||.+|.+..+..-...|...++.+..+.++++..++..++..+....|..+||++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 4689999999998876566666789999999999999998888888765447788999997
No 286
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=74.94 E-value=4.8 Score=28.92 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC--eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI--STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~ 233 (323)
....++++||++-..+...+..|+..|+ .+..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 4567999999998888889999999988 5888889874
No 287
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=74.86 E-value=7 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCCCeEEEEecCcc--cHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLN--SSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||++-. .+..++..|...|+.+..+.|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 45689999999753 677888888888988888888864
No 288
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=74.15 E-value=9.9 Score=37.95 Aligned_cols=81 Identities=12% Similarity=0.207 Sum_probs=55.6
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc---C---CCCCEEEeChHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL---N---NPIDMVVGTPGRILQH 81 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~Iii~Tp~~l~~~ 81 (323)
+...+...++.++||.|.+++.+..+.+.++.. .|+++..++|+.....+.+.+ . ++++|+|+| ..
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~---~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT-----dv 555 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER---EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS-----EI 555 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc---cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec-----hh
Confidence 444445555789999999999999999888543 367889999987665443332 2 357899999 22
Q ss_pred HHcCCCCCCCCcEEee
Q 047490 82 IEDGNMVYGDIKYLVL 97 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIi 97 (323)
.. ..+.+...+.||.
T Consensus 556 gs-eGlNlq~a~~VIn 570 (956)
T PRK04914 556 GS-EGRNFQFASHLVL 570 (956)
T ss_pred hc-cCCCcccccEEEE
Confidence 22 3455666666654
No 289
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=74.05 E-value=8.8 Score=35.24 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=53.7
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--CCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--NMVYG 90 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~ 90 (323)
....+....|++|+.+-+.+....++.+..... ..........+...|.+.--....+.+... ...-.
T Consensus 114 ~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~ 183 (546)
T COG4626 114 NWRSGAGIYILAPSVEQAANSFNPARDMVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGL 183 (546)
T ss_pred hhhcCCcEEEEeccHHHHHHhhHHHHHHHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCC
Confidence 345678999999999999999999988876432 000111111111112222222222222222 22334
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNR 122 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~ 122 (323)
+..+.|+||.|.....+ ..+..+...+...
T Consensus 184 ~~~~~I~DEih~f~~~~--~~~~~~~~g~~ar 213 (546)
T COG4626 184 NSVGAIIDELHLFGKQE--DMYSEAKGGLGAR 213 (546)
T ss_pred CcceEEEehhhhhcCHH--HHHHHHHhhhccC
Confidence 56799999999765432 5566666555443
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=73.96 E-value=11 Score=33.66 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=49.2
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc--c-----cc--CCCCCEEEeChHHHHHHHHc----CC-
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE--D-----SL--NNPIDMVVGTPGRILQHIED----GN- 86 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~--~~~~~Iii~Tp~~l~~~~~~----~~- 86 (323)
.++.+...++...+..+.+.. ........++|........ . .. ..+..+++.|.+.+...+.. ..
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~-~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~ 190 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENP-GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKM 190 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCc-CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCH
Confidence 455677777777666665542 1123556788876654321 1 11 12467888888776543221 10
Q ss_pred ----CCCCCCcEEeecchhhhhc
Q 047490 87 ----MVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 87 ----~~~~~~~~vIiDE~h~~~~ 105 (323)
..+.+.+++++||+|.+..
T Consensus 191 ~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 191 EEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHHHHhCCEEEEehhhhhcC
Confidence 1245678999999998754
No 291
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=73.75 E-value=43 Score=26.48 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=43.4
Q ss_pred ceeEEEeecCccCCccccccC-----CCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhh
Q 047490 45 RFRSTMVSGGGRLRPQEDSLN-----NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL 119 (323)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~-----~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~ 119 (323)
+.++..+....+.......+. +...+.|-++..+...+....... +++.|.+|||+ -|.+.+-..+..+
T Consensus 32 g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQ-----F~~~~~v~~l~~l 105 (201)
T COG1435 32 GMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQ-----FFDEELVYVLNEL 105 (201)
T ss_pred CCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCC-CcCEEEEehhH-----hCCHHHHHHHHHH
Confidence 567777777766554433332 123577778888877776543322 28899999998 3444444555555
Q ss_pred cc
Q 047490 120 KN 121 (323)
Q Consensus 120 ~~ 121 (323)
..
T Consensus 106 ad 107 (201)
T COG1435 106 AD 107 (201)
T ss_pred Hh
Confidence 43
No 292
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=73.73 E-value=9.1 Score=33.45 Aligned_cols=75 Identities=9% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc-------cc-CCCCCEEEeChHHHHHHHHcCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED-------SL-NNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
++.++||.++|+.-+..+++.+++... ...+..++|+....++.. .+ .+...|+|+|. .+.. .+
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~--~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~~-Gi 292 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAP--EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIEA-SL 292 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcC--CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chhc-ee
Confidence 357999999999999999999988654 236888888866544432 12 34567999994 3333 34
Q ss_pred CCCCCcEEeecc
Q 047490 88 VYGDIKYLVLDE 99 (323)
Q Consensus 88 ~~~~~~~vIiDE 99 (323)
.+ +++++|.+.
T Consensus 293 Di-~~~~vi~~~ 303 (358)
T TIGR01587 293 DI-SADVMITEL 303 (358)
T ss_pred cc-CCCEEEEcC
Confidence 44 366666543
No 293
>PRK06620 hypothetical protein; Validated
Probab=73.69 E-value=13 Score=29.97 Aligned_cols=81 Identities=4% Similarity=0.041 Sum_probs=43.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccc-eeEEEeecCccCCcc--ccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQ--EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..--+|+.++.+.+.+..+.+.+...... -+...++|....... .+.+....+..+.+...... ..+.+.+
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~~~~d 87 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EILEKYN 87 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHHhcCC
Confidence 46678889988887777666654111111 145678887655432 12222222334443222111 1234568
Q ss_pred EEeecchhhh
Q 047490 94 YLVLDEADTM 103 (323)
Q Consensus 94 ~vIiDE~h~~ 103 (323)
++++||+|.+
T Consensus 88 ~lliDdi~~~ 97 (214)
T PRK06620 88 AFIIEDIENW 97 (214)
T ss_pred EEEEeccccc
Confidence 8999999954
No 294
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.62 E-value=21 Score=25.43 Aligned_cols=76 Identities=24% Similarity=0.187 Sum_probs=47.7
Q ss_pred cCChhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhCC---CeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 178 SGSENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
+.+..|...+...+.... ....+++++|++...++...+.+.... ..+..+++........ .... ....
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~ 81 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLS--GKTD 81 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhc--CCCC
Confidence 445556544444433322 255799999999999988877766543 6777788776544433 1112 4456
Q ss_pred EEEEecc
Q 047490 253 TLVCTDL 259 (323)
Q Consensus 253 ilv~t~~ 259 (323)
++++|..
T Consensus 82 i~i~t~~ 88 (144)
T cd00046 82 IVVGTPG 88 (144)
T ss_pred EEEECcH
Confidence 8888864
No 295
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=73.57 E-value=13 Score=33.68 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=48.7
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc------ccc---CCCCCEEEeChHHHHHHHHc----CC-
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE------DSL---NNPIDMVVGTPGRILQHIED----GN- 86 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~Iii~Tp~~l~~~~~~----~~- 86 (323)
.++.+....+...+..+.+.. ....+...++|........ ..+ ..+..+++.|.+.+...+.. ..
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~-~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~ 202 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENP-GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTM 202 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCc-CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcH
Confidence 455677776666666655432 1223567788877654321 111 12456888888776443211 10
Q ss_pred ----CCCCCCcEEeecchhhhhc
Q 047490 87 ----MVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 87 ----~~~~~~~~vIiDE~h~~~~ 105 (323)
..+.+.+++++||+|.+..
T Consensus 203 ~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 203 EEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHHHHhcCCEEEEehhhhhcC
Confidence 1245688999999998754
No 296
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=73.33 E-value=4.9 Score=27.64 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 35678999999877777888889888884 777888764
No 297
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=73.28 E-value=3.2 Score=39.69 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCEEEeChHHHHHHHHcCCCC--CCCCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIEDGNMV--YGDIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~~~~--~~~~~~vIiDE~h~~~~ 105 (323)
.++++|+++..+..-.-..... ...-..+|+||+|++-+
T Consensus 194 ~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 194 NADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 3689999999887654433222 34667999999999764
No 298
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=73.10 E-value=8.7 Score=37.16 Aligned_cols=126 Identities=11% Similarity=0.086 Sum_probs=63.1
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHH---HHHHHHHhc-ccc--ceeEEEeecCccCCccccccCCCCCEEEeChHHHH
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQ---VFRVAKSIS-HHA--RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q---~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~ 79 (323)
..|+.+..+-.-.+-||+|||.+.-.- ..+.+++.+ +.. +.+.-.+..+.......-...+.+.+++.|...+.
T Consensus 93 rtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~~~~~~~~vLl~~~~Afn 172 (985)
T COG3587 93 RTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKFKSNNKPCVLLIFVSAFN 172 (985)
T ss_pred HHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHhhccCCCceEEEEehhhhc
Confidence 345666666667788999999987544 333333333 110 11222222221111112223455778888876663
Q ss_pred HH------HHcCCCCCCC--------------C-cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEe
Q 047490 80 QH------IEDGNMVYGD--------------I-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 80 ~~------~~~~~~~~~~--------------~-~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sa 138 (323)
.- +........+ . -.||+||=|++... ...+..+. .+.. .-++=++|
T Consensus 173 k~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~-~l~p---------l~ilRfgA 240 (985)
T COG3587 173 KEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIK-QLNP---------LLILRFGA 240 (985)
T ss_pred cccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHH-hhCc---------eEEEEecc
Confidence 32 1111111111 1 37899999998653 22233332 2221 24666789
Q ss_pred ecchh
Q 047490 139 TMTKA 143 (323)
Q Consensus 139 t~~~~ 143 (323)
|..+.
T Consensus 241 Tfkd~ 245 (985)
T COG3587 241 TFKDE 245 (985)
T ss_pred cchhh
Confidence 87654
No 299
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=72.68 E-value=7.8 Score=26.43 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||++-..+...+..|.+.++ .+..+.|++.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 3567999999998888888888988766 5777888764
No 300
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=72.64 E-value=4.8 Score=36.01 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCCcEE-eecchhhhhcCC---ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 89 YGDIKYL-VLDEADTMFDRG---FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 89 ~~~~~~v-IiDE~h~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
+.+-++| +|||||.+++.. +.+.++.+++.++.+ .+-++++|-+|.+-
T Consensus 252 ~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSK-------GVGv~fvTQ~P~Di 303 (502)
T PF05872_consen 252 LDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSK-------GVGVYFVTQNPTDI 303 (502)
T ss_pred CCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhcc-------CceEEEEeCCCCCC
Confidence 4455665 699999998755 445666666666543 45789999998543
No 301
>PHA02653 RNA helicase NPH-II; Provisional
Probab=71.92 E-value=9.2 Score=36.60 Aligned_cols=73 Identities=7% Similarity=0.116 Sum_probs=52.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc-cccc--CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ-EDSL--NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+..+||-+|+..-+..+.+.+++..+ ++.+..++|+.....+ .+.. .+...|+|+|. . -..++..+++
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~--~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----I-AERGIDIp~V 465 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLP--IYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----Y-LESSVTIRNA 465 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcC--CceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----h-hhccccccCe
Confidence 346899999999999999888887642 4688899998765422 1223 34468999993 3 3346778888
Q ss_pred cEEe
Q 047490 93 KYLV 96 (323)
Q Consensus 93 ~~vI 96 (323)
++||
T Consensus 466 ~~VI 469 (675)
T PHA02653 466 THVY 469 (675)
T ss_pred eEEE
Confidence 8886
No 302
>PRK09694 helicase Cas3; Provisional
Probab=71.85 E-value=13 Score=36.80 Aligned_cols=78 Identities=13% Similarity=0.290 Sum_probs=52.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc-------ccc-CCC----CCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE-------DSL-NNP----IDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~----~~Iii~Tp~~l~~~~ 82 (323)
..+..++|+++|..-+.++++.+++.... +..+..+++.....++. +.+ +++ ..|+|+| ..+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~-~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT-----QVi 631 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNT-QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT-----QVV 631 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCC-CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC-----cch
Confidence 34678999999999999999999976422 35788888886554431 111 111 3699999 333
Q ss_pred HcCCCCCCCCcEEeecch
Q 047490 83 EDGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~ 100 (323)
.. ++.+ +++++|-|-+
T Consensus 632 E~-GLDI-d~DvlItdla 647 (878)
T PRK09694 632 EQ-SLDL-DFDWLITQLC 647 (878)
T ss_pred hh-eeec-CCCeEEECCC
Confidence 33 3444 4788888755
No 303
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=71.83 E-value=6.2 Score=27.06 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 45679999999877788888899888876 667777754
No 304
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=71.58 E-value=4.6 Score=34.11 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=29.4
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
-+.++.+|+||||.|.... ...++..+...... .+|++.+..+..
T Consensus 127 ~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~--------trFiLIcnylsr 171 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDA-QAALRRTMEDFSRT--------TRFILICNYLSR 171 (346)
T ss_pred CCcceEEEEechhhhhHHH-HHHHHHHHhccccc--------eEEEEEcCChhh
Confidence 4457899999999886542 33445555443332 388888887653
No 305
>PRK07413 hypothetical protein; Validated
Probab=71.28 E-value=21 Score=31.38 Aligned_cols=55 Identities=24% Similarity=0.488 Sum_probs=36.1
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD 149 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 149 (323)
-..+++||+||+-..++.++-+ ...++..+..+. ....+|++...+|+.+.+..+
T Consensus 123 sg~ydlvILDEi~~Al~~gll~-~eevl~~L~~rP-----~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLP-VDEVVNTLKSRP-----EGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCcc-HHHHHHHHHhCC-----CCCEEEEeCCCCCHHHHHhCC
Confidence 3578999999999888877543 334444444332 233677777777877766544
No 306
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=71.24 E-value=7 Score=27.33 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=30.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe--eEEecCCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS--TVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~ 233 (323)
+..++++||.+-..+...+..|+..|+. +..+.|+++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 4578999999988777788899988884 777888875
No 307
>PHA02533 17 large terminase protein; Provisional
Probab=70.45 E-value=21 Score=33.18 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccc--eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.++..+++++|+..-+..+.+.++.+..... +... +.. .....-.+.+++.|.+.|.. .....=.+.
T Consensus 102 ~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~-i~~---~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~ 170 (534)
T PHA02533 102 NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPG-IVE---WNKGSIELENGSKIGAYASS-------PDAVRGNSF 170 (534)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcc-eee---cCccEEEeCCCCEEEEEeCC-------CCccCCCCC
Confidence 3467999999999999999998887765422 1110 000 01111223455666555522 111122256
Q ss_pred cEEeecchhhh
Q 047490 93 KYLVLDEADTM 103 (323)
Q Consensus 93 ~~vIiDE~h~~ 103 (323)
+++|+||+|.+
T Consensus 171 ~~liiDE~a~~ 181 (534)
T PHA02533 171 AMIYIDECAFI 181 (534)
T ss_pred ceEEEeccccC
Confidence 78999999955
No 308
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.29 E-value=9.7 Score=33.11 Aligned_cols=70 Identities=9% Similarity=0.255 Sum_probs=51.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
.++||.|.|++-+..+++.+++.+. .+..++|+....++.... .+...++|+| +.+-+ .+....+.
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh----~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT-----nV~AR-GiDv~qVs 400 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGH----QVSLLHGDLTVEQRAAIIDRFREGKEKVLITT-----NVCAR-GIDVAQVS 400 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCc----eeEEeeccchhHHHHHHHHHHhcCcceEEEEe-----chhhc-ccccceEE
Confidence 5789999999999999999998754 788899987765554332 2346899999 33333 45666777
Q ss_pred EEee
Q 047490 94 YLVL 97 (323)
Q Consensus 94 ~vIi 97 (323)
+||=
T Consensus 401 ~VvN 404 (477)
T KOG0332|consen 401 VVVN 404 (477)
T ss_pred EEEe
Confidence 6664
No 309
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=70.10 E-value=10 Score=35.44 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=78.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-cccc--cC---C-CCCE
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-AARG--LD---L-DVDH 270 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~~~G--id---~-~~~~ 270 (323)
.+.+||..|-...-+.=.+.|+..|+.+..+++.++.+++..++..... |.+++|.-++- +... ++ - ++..
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~--g~~klLyisPErl~~~~f~~~L~~~~i~l 134 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKS--GQLKLLYISPERLMSPRFLELLKRLPISL 134 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhc--CceeEEEECchhhcChHHHHHHHhCCCce
Confidence 3589999999888888788888999999999999999999999999999 99998876652 1111 11 1 1222
Q ss_pred --------EEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 271 --------VIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 271 --------vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|-.+|- +.+.-..+.|+....-..-.++.+.-.-+......|.+.|+-+
T Consensus 135 ~vIDEAHCiSqWGh--dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~ 191 (590)
T COG0514 135 VAIDEAHCISQWGH--DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQ 191 (590)
T ss_pred EEechHHHHhhcCC--ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCC
Confidence 222321 2333334444442221234566665566777777777766544
No 310
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=70.05 E-value=43 Score=30.36 Aligned_cols=83 Identities=16% Similarity=0.324 Sum_probs=47.9
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc------ccc---CCCCCEEEeChHHHHHHHHc----CCC
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE------DSL---NNPIDMVVGTPGRILQHIED----GNM 87 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~Iii~Tp~~l~~~~~~----~~~ 87 (323)
.++.|...++...+..+..... ..+...++|+......- ..+ ..+..+++.|.+.|...+.. +..
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~ 184 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPG--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL 184 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH
Confidence 4557777776555554443211 13567888877654321 111 12357888888887544321 110
Q ss_pred -----CC-CCCcEEeecchhhhhc
Q 047490 88 -----VY-GDIKYLVLDEADTMFD 105 (323)
Q Consensus 88 -----~~-~~~~~vIiDE~h~~~~ 105 (323)
.+ .+.+++++||+|.+.+
T Consensus 185 ~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 185 NEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHHHHHhcCCEEEEechhhhcC
Confidence 11 3588999999998754
No 311
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=69.95 E-value=21 Score=33.68 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=62.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc------cc---cCCCCCEEEeChHHHHHHHHc----C
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE------DS---LNNPIDMVVGTPGRILQHIED----G 85 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~Iii~Tp~~l~~~~~~----~ 85 (323)
--+|+.+...++...+..+-... ....+...++|+......- .. ...+..+++.|.+.|.+.+.. +
T Consensus 288 DnFvvG~sN~~A~aaa~avae~~-~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~ 366 (617)
T PRK14086 288 DTFVIGASNRFAHAAAVAVAEAP-AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDG 366 (617)
T ss_pred hhhcCCCccHHHHHHHHHHHhCc-cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhc
Confidence 34566777765554444333321 1123456788876654321 11 123567888888877543321 1
Q ss_pred C-----CCCCCCcEEeecchhhhhcCCC-hhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 86 N-----MVYGDIKYLVLDEADTMFDRGF-GPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 86 ~-----~~~~~~~~vIiDE~h~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
. ..+.+++++||||+|.+..... ...+..++..+.... -++|+.|-..+..+
T Consensus 367 ~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-------k~IIITSd~~P~eL 424 (617)
T PRK14086 367 KGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-------KQIVLSSDRPPKQL 424 (617)
T ss_pred cHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcC-------CCEEEecCCChHhh
Confidence 1 1246789999999998865332 233444554444321 15665555444444
No 312
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=69.43 E-value=9.4 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..+++++|++-..+...+..|+..|+ .+..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4667999999999999999999998887 4667777753
No 313
>PRK00254 ski2-like helicase; Provisional
Probab=69.21 E-value=19 Score=35.09 Aligned_cols=78 Identities=9% Similarity=0.156 Sum_probs=51.8
Q ss_pred eeEEeccCChhHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 172 HDFIKLSGSENKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
......+.+..|.... +.++......+.++|+.+|++..+...++.++. .+..+..++|+.+...+ +.
T Consensus 41 nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~~-- 112 (720)
T PRK00254 41 NLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------WL-- 112 (720)
T ss_pred cEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------hh--
Confidence 3344455566665433 344443334567999999999999988877664 47888999999874321 11
Q ss_pred CCCCCEEEEec
Q 047490 248 DGDCPTLVCTD 258 (323)
Q Consensus 248 ~g~~~ilv~t~ 258 (323)
+..+|+|+|+
T Consensus 113 -~~~~IiV~Tp 122 (720)
T PRK00254 113 -GKYDIIIATA 122 (720)
T ss_pred -ccCCEEEEcH
Confidence 3457899994
No 314
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=69.05 E-value=10 Score=25.98 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
+..++++||++-..+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4679999999988888888888888874 677888865
No 315
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=68.68 E-value=25 Score=27.30 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
.+-+..+++.... ++.++-++-.+...++.+++.|++. +..+..+||.+++++.+.+.++.++ ...+++
T Consensus 34 ~dl~~~l~~~~~~---~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil 104 (177)
T TIGR00696 34 PDLMEELCQRAGK---EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEE
Confidence 3444455554432 4457777777778888888888765 5555556888887777777888777 444433
No 316
>PRK04296 thymidine kinase; Provisional
Probab=68.55 E-value=55 Score=25.63 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=25.6
Q ss_pred EEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 71 ii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
.+..++.++..+.. .-.++++||+||+|.+. .+.+..++..+.
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~ 103 (190)
T PRK04296 61 PVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLD 103 (190)
T ss_pred EeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHH
Confidence 34566666665544 34578999999998531 222445555543
No 317
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=68.37 E-value=9.4 Score=25.73 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=27.6
Q ss_pred CCCeEEEEecC--cccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 197 KGNKVMVFCNT--LNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~--~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
+..++++||.+ +..+...+..|+..|+ .+..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 46799999999 3446778888888876 4667777764
No 318
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=68.36 E-value=29 Score=25.76 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccccc
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGL 264 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gi 264 (323)
..+..++......|.|++|-|.+...++++-+.|=.......+-|+.-... .+..-.|+|++.--. =
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e~-----------~~~~qPIli~~~~~~--p 82 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGEP-----------PPAGQPILIAWPGGN--P 82 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCCC-----------CCCCCCEEEEcCCCC--C
Confidence 377777777788999999999999999999999866665666666643211 113445888876322 1
Q ss_pred CC-CCCEEEEcCC
Q 047490 265 DL-DVDHVIMFDF 276 (323)
Q Consensus 265 d~-~~~~vi~~~~ 276 (323)
|- +++.+|+...
T Consensus 83 n~~~~~~lInl~d 95 (144)
T COG2927 83 NSARVDLLINLAD 95 (144)
T ss_pred CCCceeEEEeccc
Confidence 33 4566776543
No 319
>PRK13766 Hef nuclease; Provisional
Probab=68.31 E-value=29 Score=34.03 Aligned_cols=72 Identities=26% Similarity=0.371 Sum_probs=49.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC-C---CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c-----ccccCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN-Q---ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A-----ARGLDL 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~-----~~Gid~ 266 (323)
.++++|+.+++...++...+.++.. + ..+..++|+.+..+|...+ .. + .|+|+|+- + ..-+++
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~---~~--~--~iiv~T~~~l~~~l~~~~~~~ 129 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW---EK--A--KVIVATPQVIENDLIAGRISL 129 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH---hC--C--CEEEECHHHHHHHHHcCCCCh
Confidence 5689999999999887777776653 3 3678899998887765443 33 3 48999862 1 223456
Q ss_pred -CCCEEEEcC
Q 047490 267 -DVDHVIMFD 275 (323)
Q Consensus 267 -~~~~vi~~~ 275 (323)
+++.+|+-.
T Consensus 130 ~~~~liVvDE 139 (773)
T PRK13766 130 EDVSLLIFDE 139 (773)
T ss_pred hhCcEEEEEC
Confidence 677777644
No 320
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=68.31 E-value=2.3 Score=36.82 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=18.7
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNR 122 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~ 122 (323)
.+||+|||+.+ ....+..|+.+...-
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~G 378 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEG 378 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCC
Confidence 58999999965 345577777776543
No 321
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=68.02 E-value=16 Score=36.39 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=68.1
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHH-----Hhcc----ccceeEEEeecCccC-------Ccccccc-----
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAK-----SISH----HARFRSTMVSGGGRL-------RPQEDSL----- 64 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-----~~~~----~~~~~~~~~~~~~~~-------~~~~~~~----- 64 (323)
.+|+......+..+.||+||+.+.-..+.+.+. .++. ...+....+.++... ....+..
T Consensus 78 ~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~ 157 (986)
T PRK15483 78 RLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASR 157 (986)
T ss_pred HHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccc
Confidence 456666677778899999999998888776655 2221 112333333332100 1111111
Q ss_pred --CCCCCEEEeChHHHHHHHH-cCC----------CCCC---CC-cEEeecchhhhhcCCChhhHHHHHhhhccccCCCC
Q 047490 65 --NNPIDMVVGTPGRILQHIE-DGN----------MVYG---DI-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN 127 (323)
Q Consensus 65 --~~~~~Iii~Tp~~l~~~~~-~~~----------~~~~---~~-~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (323)
.+...|+++|-+.|..-.. ... ..+. .. -.||+||.|++...+ .....+ ..+...
T Consensus 158 ~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~--k~~~~i-~~lnpl----- 229 (986)
T PRK15483 158 QNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN--KFYQAI-EALKPQ----- 229 (986)
T ss_pred cCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch--HHHHHH-HhcCcc-----
Confidence 1246899999998854221 100 1111 11 378999999885422 122222 333321
Q ss_pred CCCceEEEEEeecch
Q 047490 128 GQGFQTVLVSATMTK 142 (323)
Q Consensus 128 ~~~~~~i~~sat~~~ 142 (323)
-++-+|||.+.
T Consensus 230 ----~~lrysAT~~~ 240 (986)
T PRK15483 230 ----MIIRFGATFPD 240 (986)
T ss_pred ----cEEEEeeecCC
Confidence 35679999976
No 322
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=67.83 E-value=18 Score=25.91 Aligned_cols=12 Identities=58% Similarity=0.927 Sum_probs=10.7
Q ss_pred cEEeecchhhhh
Q 047490 93 KYLVLDEADTMF 104 (323)
Q Consensus 93 ~~vIiDE~h~~~ 104 (323)
.++|+||+|.+.
T Consensus 89 ~~lviDe~~~l~ 100 (131)
T PF13401_consen 89 VLLVIDEADHLF 100 (131)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEeChHhcC
Confidence 689999999975
No 323
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=67.41 E-value=11 Score=28.65 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 147 (323)
...++++|+||+-..+..++-+ ...++..+..+. ....+|+.+..+|+++.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~-~~~v~~ll~~rp-----~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLD-VEEVVDLLKAKP-----EDLELVLTGRNAPKELIEA 145 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCC-HHHHHHHHHcCC-----CCCEEEEECCCCCHHHHHh
Confidence 4578999999999887766432 333444333322 1236777777777776654
No 324
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=67.24 E-value=17 Score=34.01 Aligned_cols=122 Identities=15% Similarity=0.088 Sum_probs=62.9
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHH-HHHHHhccccceeEEEeec----CccCCccccccCCCCCEEEeChHHHHHHHH
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVF-RVAKSISHHARFRSTMVSG----GGRLRPQEDSLNNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~ 83 (323)
+.........-+|++.||.+.+.+.. .++..+......-...+.. +.........+. +..+.++...+
T Consensus 54 ~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------ 126 (557)
T PF05876_consen 54 IGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------ 126 (557)
T ss_pred ceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC------
Confidence 33344444467899999999998876 6666665543211112222 111111122223 33455544221
Q ss_pred cCCCCCCCCcEEeecchhhhhc--CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 84 DGNMVYGDIKYLVLDEADTMFD--RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
...+.-..++++++||++.+.. .+-++.+..+........ ....++...||...
T Consensus 127 ~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~------~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 127 PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFG------SNRKILRISTPTIE 182 (557)
T ss_pred CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhc------cCcEEEEeCCCCCC
Confidence 1223345689999999998843 224455555544443321 11456666666543
No 325
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=67.05 E-value=33 Score=25.96 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=57.8
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
....+...+..++...+..|.+++|+|++...++.+=+.|=.......+=|+...... . ....|+++++
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~--a~~PV~L~~~ 78 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------P--EKQPIYITDE 78 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------C--CCCCEEEecC
Confidence 3566888888888888889999999999999998888887555555566676433110 1 3456888754
Q ss_pred ccccccCCCCCEEEEcCC
Q 047490 259 LAARGLDLDVDHVIMFDF 276 (323)
Q Consensus 259 ~~~~Gid~~~~~vi~~~~ 276 (323)
.- +.+ +.+.+|+.+.
T Consensus 79 ~~--~p~-~~~vLiNL~~ 93 (154)
T PRK06646 79 LQ--NPN-NASVLVIISP 93 (154)
T ss_pred CC--CCC-CCCEEEECCC
Confidence 31 222 5666787764
No 326
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=67.02 E-value=14 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=30.2
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 35679999999988888888999888874 666777753
No 327
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.49 E-value=13 Score=35.30 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
...++++||||+|.|.. ...+.++..+.+.. .++.||+.|..+.
T Consensus 122 ~gr~KViIIDEah~Ls~----~AaNALLKTLEEPP-----~~v~FILaTtep~ 165 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN----HAFNAMLKTLEEPP-----EHVKFILATTDPQ 165 (700)
T ss_pred cCCceEEEEEChHhcCH----HHHHHHHHhhccCC-----CCceEEEEeCChH
Confidence 45688999999998854 33444554443321 2346777765543
No 328
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=66.43 E-value=28 Score=33.60 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=52.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
.-+++..|.+.- .++|=||.||+-. .+..-..|..+ .+.+..|||. ..+|+++...+....+...||++|--+.
T Consensus 435 vIaFlayLkq~g-~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la 510 (941)
T KOG0389|consen 435 VIAFLAYLKQIG-NPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLA 510 (941)
T ss_pred HHHHHHHHHHcC-CCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecc
Confidence 344555665543 3568888898854 44443444443 6788889996 4799999999998656889999996555
Q ss_pred cc
Q 047490 262 RG 263 (323)
Q Consensus 262 ~G 263 (323)
.|
T Consensus 511 ~~ 512 (941)
T KOG0389|consen 511 AS 512 (941)
T ss_pred cC
Confidence 44
No 329
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.35 E-value=97 Score=27.62 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=58.4
Q ss_pred cEEEEcCC----HHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc---CC--CCCE-EEeChHHHHHHHHcCCCC
Q 047490 19 RAVVLCPT----RELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL---NN--PIDM-VVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 19 ~~lvl~P~----~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~I-ii~Tp~~l~~~~~~~~~~ 88 (323)
.++++-|+ ...+..++..+.......+.++..++.+.-.......+ .. +..+ .+-++..+...+..
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~---- 251 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ---- 251 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----
Confidence 44555564 33445555555543322355777777775322211111 11 2333 33456666655543
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
..+.++|++|++.+.... ...+..+...+...... .-.++.+|||....
T Consensus 252 ~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~----~e~~LVlsat~~~~ 300 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRD----AEFHLAVSSTTKTS 300 (388)
T ss_pred hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCC----CeEEEEEcCCCCHH
Confidence 467899999999976431 11223333322221110 11678889998643
No 330
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=66.31 E-value=66 Score=30.95 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccc
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHH 43 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 43 (323)
.+.+++|.+|...-+.++.+.++.....
T Consensus 215 ~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 215 LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 3679999999999999999888888763
No 331
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=66.25 E-value=12 Score=25.83 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=29.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
..++++||.+-..+..++..|+..|+. +..+.|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 468999999988888888899988875 677888864
No 332
>PF13245 AAA_19: Part of AAA domain
Probab=66.06 E-value=8.5 Score=25.05 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.4
Q ss_pred CccEEEEcCCHHHHHHHHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVA 37 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~ 37 (323)
+.++++++|++..++++.+.+
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH
Confidence 779999999999999998888
No 333
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=66.04 E-value=12 Score=29.45 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCcEEeecchhhhhcCCCh--hhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHH
Q 047490 91 DIKYLVLDEADTMFDRGFG--PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLV 148 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 148 (323)
.=.++|+||||........ ......+..+.... +. .+-++++|-.+. .+...+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR-h~---g~diiliTQ~~~-~id~~i 133 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR-HY---GWDIILITQSPS-QIDKFI 133 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCC-CT---T-EEEEEES-GG-GB-HHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhC-cC---CcEEEEEeCCHH-HHhHHH
Confidence 4568999999998764422 23344444443332 22 347888887764 333333
No 334
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=65.96 E-value=35 Score=32.22 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSIS 41 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~ 41 (323)
+.++++.+||-.-+..+.+.+....
T Consensus 193 ~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 193 KLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred CCcEEEECCcHHHHHHHHHHHHhhh
Confidence 3689999999988887777665543
No 335
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=65.62 E-value=15 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+...+..++..|+..|+ .+..+-|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4668999999998899999999998854 5666777754
No 336
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=65.57 E-value=20 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||++-..+...+..|...|+. +..+.|++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 35678999999988899999999988875 555777765
No 337
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=65.45 E-value=13 Score=36.17 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=55.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+.++||-|.|+..+..+++.++..... .+.++...+|+....++.... .+...++|+| +.+. ..+.
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaT-----d~le-rGID 344 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATT-----NALE-LGVD 344 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEEC-----chHh-ccCC
Confidence 579999999999999999988876432 245677788887765544332 3456899999 3333 3567
Q ss_pred CCCCcEEeecch
Q 047490 89 YGDIKYLVLDEA 100 (323)
Q Consensus 89 ~~~~~~vIiDE~ 100 (323)
+.++++||.-+.
T Consensus 345 I~~vd~VI~~~~ 356 (742)
T TIGR03817 345 ISGLDAVVIAGF 356 (742)
T ss_pred cccccEEEEeCC
Confidence 788888887654
No 338
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=65.34 E-value=21 Score=24.64 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHH-----HhhCCC-eeEEecCCCC
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHF-----LNENQI-STVNYHGEVP 233 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~-----l~~~~~-~~~~~~~~~~ 233 (323)
+................++++||.+-......+.. |...|. .+..+.|++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 52 KLDEFLKELGKKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHHHHHHTHGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccccccccccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 33443444444445667899999766666665555 777676 8888888864
No 339
>PRK01172 ski2-like helicase; Provisional
Probab=65.13 E-value=19 Score=34.71 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=48.0
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
.+...+.+..|.....-.+.+....+.++++.+|++..|.+.++.++. .+..+....|+...... +. .
T Consensus 40 vlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~~---~ 110 (674)
T PRK01172 40 VIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------FI---K 110 (674)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------hh---c
Confidence 345555566666533322222223467899999999999888877654 46778888887664321 11 2
Q ss_pred CCCEEEEec
Q 047490 250 DCPTLVCTD 258 (323)
Q Consensus 250 ~~~ilv~t~ 258 (323)
..+|+|+|+
T Consensus 111 ~~dIiv~Tp 119 (674)
T PRK01172 111 RYDVVILTS 119 (674)
T ss_pred cCCEEEECH
Confidence 346888886
No 340
>PF13245 AAA_19: Part of AAA domain
Probab=64.10 E-value=8.4 Score=25.08 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=32.6
Q ss_pred eccCChhHHHHHHHHhccCCCC----CCeEEEEecCcccHHHHHHHH
Q 047490 176 KLSGSENKLEALLQVLEPSLSK----GNKVMVFCNTLNSSRAVDHFL 218 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~----~~~~lvf~~~~~~~~~l~~~l 218 (323)
.-.++..|...+.+.+...... ++++++.+++...++.+.+.+
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4556677876666665554422 789999999999999999988
No 341
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=64.07 E-value=13 Score=28.63 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=34.3
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHH
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLV 148 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 148 (323)
-..+++||+||+-..++.++-+ ...++..+..+. ....+|+++..+|+.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~-~~~v~~lL~~rp-----~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLD-VEEVVEALQERP-----GHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcC-HHHHHHHHHhCC-----CCCEEEEECCCCCHHHHHhC
Confidence 4578999999999888777443 223334343322 23367777777777766544
No 342
>PHA02558 uvsW UvsW helicase; Provisional
Probab=64.03 E-value=15 Score=33.88 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=51.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc---C-CCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL---N-NPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.+++|++.+.+=+..+++.|++. +.++..++|+....++.... . +...|+|+|.+.+ ...+...+
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l-----~eG~Dip~ 413 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKV----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVF-----STGISIKN 413 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEccee-----cccccccc
Confidence 4568899999888777777777664 56899999987765543322 2 3346888885422 34677888
Q ss_pred CcEEeec
Q 047490 92 IKYLVLD 98 (323)
Q Consensus 92 ~~~vIiD 98 (323)
++.||+.
T Consensus 414 ld~vIl~ 420 (501)
T PHA02558 414 LHHVIFA 420 (501)
T ss_pred ccEEEEe
Confidence 8899874
No 343
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=63.22 E-value=18 Score=34.62 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=58.4
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCc--------ccccc----CCCCCEEEeChHHHH
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRP--------QEDSL----NNPIDMVVGTPGRIL 79 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~----~~~~~Iii~Tp~~l~ 79 (323)
....+..|+|+-+-+|+.|..+.+.+.+ ....+++...+.|...... +...+ .+..+|+|+|
T Consensus 408 f~~~~dsR~IIFve~R~sa~~l~~~l~~-~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVAT----- 481 (746)
T KOG0354|consen 408 FEQNPDSRTIIFVETRESALALKKWLLQ-LHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVAT----- 481 (746)
T ss_pred hhcCCCccEEEEEehHHHHHHHHHHHHh-hhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEe-----
Confidence 3467789999999999999999998887 3345677777777544321 11111 3557899999
Q ss_pred HHHHcCCCCCCCCcEEeecch
Q 047490 80 QHIEDGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~vIiDE~ 100 (323)
.+-...+....+++||.=++
T Consensus 482 -SV~EEGLDI~ec~lVIcYd~ 501 (746)
T KOG0354|consen 482 -SVAEEGLDIGECNLVICYDY 501 (746)
T ss_pred -cchhccCCcccccEEEEecC
Confidence 24456788889999998555
No 344
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=63.01 E-value=18 Score=30.29 Aligned_cols=70 Identities=10% Similarity=0.227 Sum_probs=50.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
.++++.|.|+.-++.+.+.+++. ...+...+|+...+++.... .+...|+|+|- .. ......+.+.
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~----nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD-----Vw-aRGiDv~qVs 336 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD-----VW-ARGIDVQQVS 336 (400)
T ss_pred heEEEEecccchhhHHHHHHHhh----CceeeeccCCcchhHHHHHHHHhhcCCceEEEEec-----hh-hccCCcceeE
Confidence 47889999999999888888775 45888999998776655443 24568999993 22 2245667777
Q ss_pred EEee
Q 047490 94 YLVL 97 (323)
Q Consensus 94 ~vIi 97 (323)
+||=
T Consensus 337 lviN 340 (400)
T KOG0328|consen 337 LVIN 340 (400)
T ss_pred EEEe
Confidence 7764
No 345
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=62.41 E-value=51 Score=27.42 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=51.5
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccC
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid 265 (323)
.+-+++.-..++.=|+||+++...-.-...+.+++....+..+.|.... + -.++... .++.+.++...+|-.
T Consensus 50 tIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~E-D-p~~i~~~------aDi~~~~D~~~~G~~ 121 (275)
T PF12683_consen 50 TISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHE-D-PEVISSA------ADIVVNPDEISRGYT 121 (275)
T ss_dssp HHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHHH------SSEEEE--HHHHHHH
T ss_pred HHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcC-C-HHHHhhc------cCeEeccchhhccHH
Confidence 3344444344566799999999998888888888887777777776442 2 2233332 237888888888865
Q ss_pred C-------CCCEEEEcCCCCCch
Q 047490 266 L-------DVDHVIMFDFPLNSI 281 (323)
Q Consensus 266 ~-------~~~~vi~~~~p~s~~ 281 (323)
+ .++..||+..|....
T Consensus 122 i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 122 IVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp HHHHHHHTT-S-EEEEEETTGGG
T ss_pred HHHHHHHcCCceEEEEechhhcc
Confidence 3 488999999998554
No 346
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=62.37 E-value=15 Score=26.20 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=30.1
Q ss_pred CCCCeEEEEecC-cccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNT-LNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~-~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+ -..+...+..|+..|+. +..+.|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 466799999999 47888888888888865 777788864
No 347
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.08 E-value=64 Score=24.83 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEE-ecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVN-YHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
+.+-...+++.... ++.++-++-.+...++.+++.|++. +..+.. +||.+...+...+++..++ ...+++
T Consensus 31 g~dl~~~ll~~~~~---~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv 103 (171)
T cd06533 31 GSDLMPALLELAAQ---KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADIL 103 (171)
T ss_pred cHHHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEE
Confidence 34455666665553 4678888888888888888888775 555444 6788887777777888877 444433
No 348
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=61.93 E-value=5.6 Score=29.63 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=34.4
Q ss_pred EEeccCChhHHH-HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC
Q 047490 174 FIKLSGSENKLE-ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ 222 (323)
Q Consensus 174 ~~~~~~~~~k~~-~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~ 222 (323)
++...++..|.. .|.+++.+....+.++||..+++-.++++.+.|+..+
T Consensus 8 ~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 8 VLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp EEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred EEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC
Confidence 344444555554 4667777777788999999999999999999997554
No 349
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.30 E-value=41 Score=25.91 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeE-EecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTV-NYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~-~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
..+-+..+++...+ ++.++-++-.+...++.+++.|++. +..+. .+||.+++.+.+++++..++ ...++++
T Consensus 33 g~dl~~~l~~~~~~---~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~ 106 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQ---RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEE
Confidence 34455666665544 4568888888888888888888876 44444 45676888888889988887 5545443
No 350
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=60.91 E-value=22 Score=26.52 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
...+++++|.+-..+..++..|+..|+ ++..+.|++.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 457899999998888888888988877 7888999964
No 351
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=60.71 E-value=21 Score=27.70 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 147 (323)
-..++++|+||+-..++.++-+ ...++..+..+. .+..+|++.-.+|+++.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~-~eeVl~~L~~rp-----~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIP-ETEVLEFLEKRP-----SHVDVILTGPEMPESLLAI 165 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCcc-HHHHHHHHHhCC-----CCCEEEEECCCCCHHHHHh
Confidence 3578999999999988877543 333444443322 2346777777777776654
No 352
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=60.54 E-value=96 Score=26.45 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=59.7
Q ss_pred hhHHHHHHHHhccC-----CCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHH------------h
Q 047490 181 ENKLEALLQVLEPS-----LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN------------K 243 (323)
Q Consensus 181 ~~k~~~l~~~l~~~-----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~------------~ 243 (323)
..|...|-+++... .+.+.+++|.+++.++.+.+-..|...+.....+.|.....+....-. .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 34555444444333 345679999999999999999998888888877888665444433220 0
Q ss_pred c-cccCCCCCEEEEecc-ccc----ccCC-CCCEEEEcCCCCCch-hhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 244 F-KNEDGDCPTLVCTDL-AAR----GLDL-DVDHVIMFDFPLNSI-DYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 244 f-~~~~g~~~ilv~t~~-~~~----Gid~-~~~~vi~~~~p~s~~-~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
. ......+.|-++|+. +.. ..+- +++.||-+|+..+.. ...|.+-..+|.++.-.++.++.....
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nSi 247 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNSI 247 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTSH
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCCH
Confidence 0 010122334455543 322 1333 688999999764332 345555333333345566666665444
No 353
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.33 E-value=74 Score=24.24 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=47.1
Q ss_pred eEEeccCChhHHHHHHHHhccCCCC--CCeEEEEecCcccHHHHHHHHhhCC-----CeeEEecCCCCHHHHHHHHHhcc
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSK--GNKVMVFCNTLNSSRAVDHFLNENQ-----ISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
..+....+..|...+...+...... ..++++.+++...+..+...+.... .....+++... ...++.+.
T Consensus 27 ~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 102 (201)
T smart00487 27 VILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLE 102 (201)
T ss_pred EEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHh
Confidence 3444455666776554444333222 3789999999888888877776543 33444555432 33344455
Q ss_pred ccCCCCCEEEEe
Q 047490 246 NEDGDCPTLVCT 257 (323)
Q Consensus 246 ~~~g~~~ilv~t 257 (323)
. +...++++|
T Consensus 103 ~--~~~~v~~~t 112 (201)
T smart00487 103 S--GKTDILVTT 112 (201)
T ss_pred c--CCCCEEEeC
Confidence 4 544788888
No 354
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=59.76 E-value=24 Score=37.17 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=50.4
Q ss_pred CCeEEEEecCcccHHHHHHHHhh----------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc--
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNE----------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-- 259 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-- 259 (323)
+.++|+.+|++..+..+.+.|+. .++.+...||+.+..+|...++ ...+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~------~ppdILVTTPEsL 110 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR------NPPDILITTPESL 110 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc------CCCCEEEecHHHH
Confidence 46899999999988888777642 3578889999999888865433 23459999962
Q ss_pred ---cc-cc-cCC-CCCEEEE
Q 047490 260 ---AA-RG-LDL-DVDHVIM 273 (323)
Q Consensus 260 ---~~-~G-id~-~~~~vi~ 273 (323)
+. .+ ..+ ++++||.
T Consensus 111 ~~LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 111 YLMLTSRARETLRGVETVII 130 (1490)
T ss_pred HHHHhhhhhhhhccCCEEEE
Confidence 22 12 246 7888886
No 355
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=59.65 E-value=29 Score=28.55 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=39.2
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ 222 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~ 222 (323)
.....+.+.+..-+-++.+.+.|. +++.+++|+++.++++...+.|++.+
T Consensus 163 ~vDav~LDmp~PW~~le~~~~~Lk----pgg~~~~y~P~veQv~kt~~~l~~~g 212 (256)
T COG2519 163 DVDAVFLDLPDPWNVLEHVSDALK----PGGVVVVYSPTVEQVEKTVEALRERG 212 (256)
T ss_pred ccCEEEEcCCChHHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHhcC
Confidence 445566666666666677777665 67899999999999999999999864
No 356
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=59.55 E-value=18 Score=28.48 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=34.7
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD 149 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 149 (323)
-..+++||+||+-..++.++-+ ...++..+.... ....+|++...+|+++.+..+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~-~eevi~~L~~rp-----~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLD-VEEVLEALNARP-----GMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCcc-HHHHHHHHHcCC-----CCCEEEEECCCCCHHHHHhCc
Confidence 4578999999999888877543 333444443321 233677777777777665443
No 357
>PLN02160 thiosulfate sulfurtransferase
Probab=59.16 E-value=23 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.++.++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 35678999999999999999999988874 666778764
No 358
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=59.12 E-value=22 Score=36.82 Aligned_cols=74 Identities=8% Similarity=0.090 Sum_probs=53.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCC--CCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN--PIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
....+||-+|+..-+.++.+.+++... .+..+..++|+.....+...+.. +..|+++|. . -..++.+.+++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~-~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN-----I-AEtSLTIpgV~ 350 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNL-RHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN-----V-AETSLTVPGIH 350 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCC-CCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc-----H-HHhccccCCee
Confidence 346899999999999999999987642 24678889998776666555432 247999994 2 23456677887
Q ss_pred EEe
Q 047490 94 YLV 96 (323)
Q Consensus 94 ~vI 96 (323)
+||
T Consensus 351 yVI 353 (1283)
T TIGR01967 351 YVI 353 (1283)
T ss_pred EEE
Confidence 766
No 359
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.07 E-value=45 Score=25.48 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=23.1
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHH
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEE 151 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~ 151 (323)
+++.+||.|. +.+..|-..++... +-+++|.--.+.+.++.+..
T Consensus 111 DClFfdE~h~-------sLvdtIk~lL~p~g--------~Al~fsPRRg~sL~kF~de~ 154 (201)
T KOG3201|consen 111 DCLFFDEHHE-------SLVDTIKSLLRPSG--------RALLFSPRRGQSLQKFLDEV 154 (201)
T ss_pred cchhHHHHHH-------HHHHHHHHHhCccc--------ceeEecCcccchHHHHHHHH
Confidence 4678889883 34455555554332 34444444445555554443
No 360
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.96 E-value=17 Score=29.91 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=48.3
Q ss_pred CeEEEEecCcccHHHHHHHHh---hC--CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec----cc--ccccCC-
Q 047490 199 NKVMVFCNTLNSSRAVDHFLN---EN--QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD----LA--ARGLDL- 266 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~---~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~----~~--~~Gid~- 266 (323)
-.++|.|.+++.|..+.+... ++ +.++.++.|+++-..-+++++. ...|+|+|+ ++ ...+++
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~------~PhivVgTPGrilALvr~k~l~lk 184 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN------CPHIVVGTPGRILALVRNRSLNLK 184 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC------CCeEEEcCcHHHHHHHHhccCchh
Confidence 468999999999988866543 32 6788899999997777666655 224899997 22 234566
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
++.+-+.
T Consensus 185 ~vkhFvl 191 (387)
T KOG0329|consen 185 NVKHFVL 191 (387)
T ss_pred hcceeeh
Confidence 6666554
No 361
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=58.88 E-value=31 Score=33.34 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=42.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
.+.++.|.++|...|...++.+.. .|+.+..+.|+++..++.... .++|+++|+.
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~ 154 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--------ACDITYGTNN 154 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCC
Confidence 356899999999988888776654 488999999999977665432 2469999986
No 362
>PRK06526 transposase; Provisional
Probab=58.47 E-value=10 Score=31.48 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=25.8
Q ss_pred CCCCEEEeChHHHHHHHHcC---------CCCCCCCcEEeecchhhhh
Q 047490 66 NPIDMVVGTPGRILQHIEDG---------NMVYGDIKYLVLDEADTMF 104 (323)
Q Consensus 66 ~~~~Iii~Tp~~l~~~~~~~---------~~~~~~~~~vIiDE~h~~~ 104 (323)
.+..+++.|...+...+... ...+.+.+++|+||+|...
T Consensus 125 ~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 125 AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 45677788877776555321 1125668999999999753
No 363
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=58.26 E-value=10 Score=35.84 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCEEEeChHHHHHHHHcCCCCCC-CCcEEeecchhhhhc
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYG-DIKYLVLDEADTMFD 105 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~-~~~~vIiDE~h~~~~ 105 (323)
+++++.-++.|++--.++...++ .=..||+||||.+.+
T Consensus 324 aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 324 AQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred ccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 68988888888776555433221 124799999999764
No 364
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=57.61 E-value=17 Score=35.33 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC--------CCCCEEEeC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN--------NPIDMVVGT 74 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~Iii~T 74 (323)
-+.+.+++|++.|...|...++.++.... ++..+++--...++.+... ++..|+|+|
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaT 501 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGP----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVAT 501 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCC----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEe
Confidence 35578999999999999999999998764 6888888766665544433 457899999
No 365
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=57.38 E-value=22 Score=35.08 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=24.6
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEE
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~s 137 (323)
...++++||||+|.|.. ...+.++..+.+.. ..+.+|+.|
T Consensus 118 ~~~~KV~IIDEad~lt~----~a~NaLLK~LEEpP-----~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP----QGFNALLKIVEEPP-----EHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCH----HHHHHHHHHHhCCC-----CCeEEEEEe
Confidence 45789999999999854 33444444444321 133566655
No 366
>PRK06835 DNA replication protein DnaC; Validated
Probab=57.35 E-value=45 Score=28.88 Aligned_cols=92 Identities=9% Similarity=0.125 Sum_probs=50.1
Q ss_pred eEEEeecCccCCcc-------ccccCCCCCEEEeChHHHHHHHHcC-----------CCCCCCCcEEeecchhhhhcCCC
Q 047490 47 RSTMVSGGGRLRPQ-------EDSLNNPIDMVVGTPGRILQHIEDG-----------NMVYGDIKYLVLDEADTMFDRGF 108 (323)
Q Consensus 47 ~~~~~~~~~~~~~~-------~~~~~~~~~Iii~Tp~~l~~~~~~~-----------~~~~~~~~~vIiDE~h~~~~~~~ 108 (323)
....++|....... ......+..|++.|...|...+... ...+.+++++|+||.+......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 56777776554432 2223456678888887776655321 02246789999999987643222
Q ss_pred h-hhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 109 G-PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 109 ~-~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
. ..+-.++...... ..++|+.|.-.+.+..
T Consensus 264 ~~~~Lf~iin~R~~~-------~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 264 SKSELFNLINKRLLR-------QKKMIISTNLSLEELL 294 (329)
T ss_pred HHHHHHHHHHHHHHC-------CCCEEEECCCCHHHHH
Confidence 1 2333333333221 1156666655554443
No 367
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=57.21 E-value=14 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEV 232 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 232 (323)
.+..++++||++-..+..++..|+..|+. +..+.|++
T Consensus 76 ~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 76 TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 35679999999977888888899888874 66777775
No 368
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=56.98 E-value=53 Score=31.27 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=51.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc------CCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED------GNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~------~~~~~ 89 (323)
+..++.+..||-.-+..+.+.+.......+. ... .... ...-..|-.+++..... .....
T Consensus 198 ~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~-----~~~-----~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~ 263 (615)
T PRK10875 198 ERCRIRLAAPTGKAAARLTESLGKALRQLPL-----TDE-----QKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNP 263 (615)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhhhhcccc-----chh-----hhhc----CCCchHHHHHHhCcCCCccchhhccccC
Confidence 3467888999999888877766554332211 000 0000 01112333333222111 11123
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
-.++++|+||+.++ -.+.+..++..++..+ ++|+++-.
T Consensus 264 l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~--------rlIlvGD~ 301 (615)
T PRK10875 264 LHLDVLVVDEASMV----DLPMMARLIDALPPHA--------RVIFLGDR 301 (615)
T ss_pred CCCCeEEEChHhcc----cHHHHHHHHHhcccCC--------EEEEecch
Confidence 35689999999765 2355666666665433 77777554
No 369
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=56.43 E-value=24 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=28.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
...++++||.+-..+...+..|...|+......|++.
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 4568999999988888889999888876555567643
No 370
>PRK08116 hypothetical protein; Validated
Probab=56.17 E-value=58 Score=27.23 Aligned_cols=72 Identities=11% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCEEEeChHHHHHHHHcC----C--------CCCCCCcEEeecchhhhhcCCC-hhhHHHHHhhhccccCCCCCCCceE
Q 047490 67 PIDMVVGTPGRILQHIEDG----N--------MVYGDIKYLVLDEADTMFDRGF-GPDIRKFLVPLKNRASKPNGQGFQT 133 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~----~--------~~~~~~~~vIiDE~h~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 133 (323)
+..+++.+...+...+... . ..+.+.+++|+||++.-....+ ...+..++...... ..++
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~-------~~~~ 214 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRK-------GLPT 214 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHC-------CCCE
Confidence 4567777766665544321 0 1256789999999964321111 12233333332211 1267
Q ss_pred EEEEeecchhhH
Q 047490 134 VLVSATMTKAVQ 145 (323)
Q Consensus 134 i~~sat~~~~~~ 145 (323)
|+.|...+.++.
T Consensus 215 IiTsN~~~~eL~ 226 (268)
T PRK08116 215 IVTTNLSLEELK 226 (268)
T ss_pred EEECCCCHHHHH
Confidence 777776665544
No 371
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=55.62 E-value=20 Score=27.64 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHH
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLV 148 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 148 (323)
-..+++||+||+-..++.++-+ ...++..+.... ....+|++...+++.+.+..
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~-~~~v~~~l~~rp-----~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLS-EEEVLDLLENRP-----ESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS--HHHHHHHHHTS------TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCCEEEEcchHHHhHCCCcc-HHHHHHHHHcCC-----CCeEEEEECCCCCHHHHHhC
Confidence 4579999999999888877533 333443333221 23367777777776666543
No 372
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.22 E-value=1.7e+02 Score=27.50 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=41.4
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
....+||||+|.=++..-...+..-+..+.... |+++.|--|. +...-. .++.... ......
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~--------QVl~VTHlPQ--VAa~ad------~H~~V~K--~~~~~~ 514 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHH--------QVLCVTHLPQ--VAAMAD------THFLVEK--ESEDGR 514 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCc--------eEEEEecHHH--HHhhhc------ceEEEEE--ecCCCc
Confidence 355899999996444223333334444444333 8888776543 332111 1111111 111122
Q ss_pred eeeEEeccCChhHHHHHHHHhcc
Q 047490 171 RHDFIKLSGSENKLEALLQVLEP 193 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~ 193 (323)
...-+..-+.+.+.+.+..++..
T Consensus 515 T~s~V~~L~~eeRveEiARMl~G 537 (557)
T COG0497 515 TESRVRPLDKEERVEEIARMLGG 537 (557)
T ss_pred eEEeeeeCCHhHHHHHHHHHhcC
Confidence 22222333356788888888853
No 373
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.02 E-value=9.7 Score=36.78 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.4
Q ss_pred CCCcEEeecchhhhhc
Q 047490 90 GDIKYLVLDEADTMFD 105 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~ 105 (323)
..++++||||+|.|..
T Consensus 118 gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN 133 (830)
T ss_pred CCceEEEEeChhhCCH
Confidence 4688999999998854
No 374
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=54.80 E-value=20 Score=28.61 Aligned_cols=35 Identities=11% Similarity=0.416 Sum_probs=20.2
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
.+||+|||+.+ ....+..++.++..-+ +++++.-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~s--------kii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGS--------KIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT---------EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCc--------EEEEecCc
Confidence 79999999965 3456777777765443 66666543
No 375
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=54.58 E-value=1.3e+02 Score=29.45 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYH 229 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 229 (323)
.+.+.|.+++...+..+...|.+.+++.....
T Consensus 344 ~~diAVL~R~~~~~~~l~~~L~~~gIP~~~~g 375 (726)
T TIGR01073 344 YGDFAILYRTNAQSRVFEETLLKANIPYKIVG 375 (726)
T ss_pred cCCEEEEEeCchhHHHHHHHHHHcCCCEEEeC
Confidence 35778889999999999999999998876543
No 376
>PF13173 AAA_14: AAA domain
Probab=53.99 E-value=15 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=16.1
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHh
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLV 117 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~ 117 (323)
.-.++++||+|.+.+ +...+..+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d 85 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVD 85 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHH
Confidence 556899999997643 3344444444
No 377
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=53.95 E-value=1.1e+02 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=25.3
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
.....+++||||+|.+.. ...+.++..+.+.. ....+|+.|..
T Consensus 107 ~~~~~kvviI~~a~~~~~----~a~NaLLK~LEEPp-----~~~~~Il~t~~ 149 (329)
T PRK08058 107 VESNKKVYIIEHADKMTA----SAANSLLKFLEEPS-----GGTTAILLTEN 149 (329)
T ss_pred cccCceEEEeehHhhhCH----HHHHHHHHHhcCCC-----CCceEEEEeCC
Confidence 345789999999998743 34445555554321 23356665443
No 378
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=53.75 E-value=36 Score=26.69 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=34.4
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD 149 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 149 (323)
..+++||+||.-..+..++-+ ...++..+..+. ....+|+..-..++.+.+..+
T Consensus 121 ~~ydlviLDEl~~al~~g~l~-~eeV~~~l~~kP-----~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLP-LEEVVALLKARP-----EHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCC-HHHHHHHHhcCC-----CCcEEEEECCCCCHHHHHHHH
Confidence 469999999999888776533 445555554332 123667666666776665544
No 379
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=53.65 E-value=34 Score=35.49 Aligned_cols=75 Identities=8% Similarity=0.058 Sum_probs=53.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC--CCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN--NPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+...+||-+|+..-+..+++.+++... ....+..++|+....++...+. +...|+|+|. . -..++.+.++
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~-~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN-----I-AEtSITIpgI 356 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNL-RHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN-----V-AETSLTVPGI 356 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCC-CcceEeecccCCCHHHHHHHhcccCCeeEEEecc-----H-HhhccccCcc
Confidence 3456899999999999999999987532 1345778888877665554433 3457999993 3 3345678888
Q ss_pred cEEe
Q 047490 93 KYLV 96 (323)
Q Consensus 93 ~~vI 96 (323)
++||
T Consensus 357 ~yVI 360 (1294)
T PRK11131 357 KYVI 360 (1294)
T ss_pred eEEE
Confidence 8877
No 380
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=53.61 E-value=28 Score=24.06 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 232 (323)
...++++||.+-..+...+..|...|+.....-|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 456899999998888888999998887644444664
No 381
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.60 E-value=27 Score=32.30 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEe
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sa 138 (323)
.+++.+|+||+|.+.. ...+.++..+.... ..+.+|+.|.
T Consensus 118 ~~~kV~iIDE~~~ls~----~a~naLLk~LEepp-----~~~~fIlatt 157 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG----HSFNALLKTLEEPP-----SHVKFILATT 157 (509)
T ss_pred CCcEEEEEEChHhcCH----HHHHHHHHHHhccC-----CCeEEEEEEC
Confidence 4688999999998854 33444444443321 2346666653
No 382
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=53.41 E-value=22 Score=35.17 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=47.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc-----------------cccCCCCCEEEeChHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE-----------------DSLNNPIDMVVGTPGRIL 79 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Iii~Tp~~l~ 79 (323)
+.++|..+=|..-++.+.-.++.+. +.+..+..+....+.. +...+.+.|+.+|--.+-
T Consensus 713 gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~ 788 (1100)
T KOG1805|consen 713 GKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN 788 (1100)
T ss_pred CCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC
Confidence 6788888888888888877777663 3333232222221111 122344677777743222
Q ss_pred HHHHcCCCCCCCCcEEeecchhhhh
Q 047490 80 QHIEDGNMVYGDIKYLVLDEADTMF 104 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~vIiDE~h~~~ 104 (323)
+. .+..+.+|++|+|||-.+.
T Consensus 789 ~p----lf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 789 HP----LFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ch----hhhccccCEEEEccccccc
Confidence 22 2335679999999998764
No 383
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=53.35 E-value=42 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
...+.+|+||+|.|.. .....++..+.+.. .+..++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~----~a~NaLLK~LEepp-----~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE----EAQNALLKTLEEPP-----ENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-H----HHHHHHHHHHHSTT-----TTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhH----HHHHHHHHHhcCCC-----CCEEEEEEECChH
Confidence 5689999999998743 34444444443321 2346776666554
No 384
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=52.88 E-value=23 Score=24.43 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeE-EecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTV-NYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 233 (323)
.+..+++++|.+-......++.|+..|+... .+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 4678999999999999999999999987776 5666654
No 385
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=52.84 E-value=81 Score=30.68 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=56.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
..+++|..|+.+=++.+.+.+.+-+...|.+-....... ........+...|=+-+|.... ..-+++|
T Consensus 261 ~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~--g~~~~~~~~~~~i~y~~P~~a~----------~~~Dllv 328 (758)
T COG1444 261 SVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDAL--GEIREVSGDGFRIEYVPPDDAQ----------EEADLLV 328 (758)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccc--cceeeecCCceeEEeeCcchhc----------ccCCEEE
Confidence 569999999999888888877776665554422222210 0111111222345556664222 1267899
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
+|||=.+ --+-+..+.... +.++||.|..
T Consensus 329 VDEAAaI----plplL~~l~~~~------------~rv~~sTTIh 357 (758)
T COG1444 329 VDEAAAI----PLPLLHKLLRRF------------PRVLFSTTIH 357 (758)
T ss_pred EehhhcC----ChHHHHHHHhhc------------CceEEEeeec
Confidence 9999643 223344444332 6788999974
No 386
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=52.81 E-value=43 Score=33.17 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=42.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
.+..+.|.+++...|...++.+.. .|..+..+.|+++..++.... .++|+++|+.
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~g 180 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNN 180 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--------CCCEEEECCh
Confidence 456799999999999888877664 488999999999988775433 2468888874
No 387
>PRK11054 helD DNA helicase IV; Provisional
Probab=52.62 E-value=2.3e+02 Score=27.56 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=25.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMV 51 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 51 (323)
+.++|+|+.|+..+..+.+++....+..++.+..+
T Consensus 241 ~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v~TF 275 (684)
T PRK11054 241 PEQILLLAFGRQAAEEMDERIRERLGTEDITARTF 275 (684)
T ss_pred HHHeEEEeccHHHHHHHHHHHHHhcCCCCcEEEeH
Confidence 46899999999999999888887665334444433
No 388
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=52.61 E-value=1.5e+02 Score=28.99 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=26.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYH 229 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 229 (323)
.+.+.|.+.+...+..+.+.|.+.+++.....
T Consensus 347 ~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g 378 (721)
T PRK11773 347 LSDCAILYRSNAQSRVLEEALLQAGIPYRIYG 378 (721)
T ss_pred cccEEEEEecchhHHHHHHHHHHCCCCEEEEC
Confidence 35788889999999999999999998876653
No 389
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=52.49 E-value=1e+02 Score=24.71 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=31.8
Q ss_pred eEEEeecCccCCcc--cc-----ccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhc
Q 047490 47 RSTMVSGGGRLRPQ--ED-----SLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 47 ~~~~~~~~~~~~~~--~~-----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 105 (323)
....++|....... .. ....+..+++.+...+.... ......+++|+||+|.+..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----DFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----hhcccCCEEEEeChhhcCc
Confidence 56677776655432 11 11234466666666554332 1234577999999998743
No 390
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=52.36 E-value=64 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.2
Q ss_pred CCCCcEEeecchhhh
Q 047490 89 YGDIKYLVLDEADTM 103 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~ 103 (323)
..+..++|+||++.+
T Consensus 82 ~~~~~~lilDe~~~~ 96 (151)
T cd00009 82 KAKPGVLFIDEIDSL 96 (151)
T ss_pred cCCCeEEEEeChhhh
Confidence 445679999999976
No 391
>PRK04195 replication factor C large subunit; Provisional
Probab=52.01 E-value=1.4e+02 Score=27.45 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=24.0
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
..++||+||+|.+....-...+..+...+... +.++|+++..+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------~~~iIli~n~~ 140 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKA-------KQPIILTANDP 140 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcC-------CCCEEEeccCc
Confidence 57899999999886532222344444433321 22566665443
No 392
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=51.63 E-value=66 Score=31.23 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.++..+......++|-||.||-......+. .++.. ++++..+||+ +++|....+.+.. ++...|+|+|-
T Consensus 205 s~l~yl~~~~~~~GPfLVi~P~StL~NW~~-Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~-~~~fdV~iTsY 275 (971)
T KOG0385|consen 205 SLLGYLKGRKGIPGPFLVIAPKSTLDNWMN-EFKRFTPSLNVVVYHGD--KEERAALRRDIML-PGRFDVCITSY 275 (971)
T ss_pred HHHHHHHHhcCCCCCeEEEeeHhhHHHHHH-HHHHhCCCcceEEEeCC--HHHHHHHHHHhhc-cCCCceEeehH
Confidence 445555555556789999999865544443 34433 7888999996 5788888777775 46888888873
No 393
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=51.13 E-value=64 Score=26.31 Aligned_cols=71 Identities=7% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEE---ecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
+.|.+.+.....+++++++++... ..+.+.+.|++.|..+.. |.............+.+.. +...+++-|+
T Consensus 105 e~L~~~~~~~~~~~~~vL~~rg~~-~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~--~~~d~i~f~S 178 (240)
T PRK09189 105 VRLAETVAAALAPTARLLYLAGRP-RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGG--APFDAVLLYS 178 (240)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCc-ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhc--CCCCEEEEeC
Confidence 445554444333556766666554 457899999988876543 3222222233455666776 6666554443
No 394
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=51.11 E-value=50 Score=21.95 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=35.6
Q ss_pred cEEEEcCCHHHHHHH-HHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQV-FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
+++++|++---..++ ...+++.++..++.......+..... ++++++++|.+--. .+.. ...+...+.+
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~------~~~Dliitt~~l~~-~~~~---~~~~~~vi~v 71 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELP------SDADLVVTHASLTD-RAKK---KAPQAQHLSV 71 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhCC------CCCCEEEEChHHHH-HHHh---cCCCCeEEEE
Confidence 578888763322222 44455555444444444434332221 45799999965322 2221 1223556666
Q ss_pred cch
Q 047490 98 DEA 100 (323)
Q Consensus 98 DE~ 100 (323)
|..
T Consensus 72 ~~~ 74 (87)
T cd05567 72 DNF 74 (87)
T ss_pred ecc
Confidence 544
No 395
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=50.72 E-value=1.5e+02 Score=27.68 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=75.5
Q ss_pred hhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---cC---CCCCEEEeChHH
Q 047490 4 HDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---LN---NPIDMVVGTPGR 77 (323)
Q Consensus 4 ~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~Iii~Tp~~ 77 (323)
..+.++..+..-+...|+|-...++ +-.+...+.+.+. .++..+||+-..+.+.++ .+ +.++|+|+|-.
T Consensus 344 v~~~~~~sl~nlk~GDCvV~FSkk~-I~~~k~kIE~~g~---~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA- 418 (700)
T KOG0953|consen 344 VEETALGSLSNLKPGDCVVAFSKKD-IFTVKKKIEKAGN---HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA- 418 (700)
T ss_pred ehhhhhhhhccCCCCCeEEEeehhh-HHHHHHHHHHhcC---cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc-
Confidence 3455666777777778888666666 4445666766643 368999998776654433 22 45899999943
Q ss_pred HHHHHHcCCCCCCCCcEEeecchhhhhcCC----ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc
Q 047490 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRG----FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ 153 (323)
Q Consensus 78 l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~ 153 (323)
+-. .+.+ +++-|||--.-...+.+ ....+..|..+....... .-.+...|+..+....+.+.+.
T Consensus 419 ----IGM-GLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~------~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 419 ----IGM-GLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK------YPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred ----ccc-cccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC------CcCceEEEeeHhhHHHHHHHHh
Confidence 211 1212 56777775555443322 223344444433332111 2244555665555556666665
Q ss_pred Cc
Q 047490 154 GI 155 (323)
Q Consensus 154 ~~ 155 (323)
.+
T Consensus 487 ~p 488 (700)
T KOG0953|consen 487 RP 488 (700)
T ss_pred CC
Confidence 43
No 396
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=50.50 E-value=34 Score=33.55 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=41.8
Q ss_pred eEEEEecCcccHH----HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc----cccc----cCC-
Q 047490 200 KVMVFCNTLNSSR----AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL----AARG----LDL- 266 (323)
Q Consensus 200 ~~lvf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~----~~~G----id~- 266 (323)
.+|=.+|-+.... ++...++..|+.+..-||++++.+|+.... ..-.||++|+- +-.+ =.+
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~------~PPdILiTTPEsL~lll~~~~~r~~l~ 148 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK------NPPHILITTPESLAILLNSPKFRELLR 148 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC------CCCcEEEeChhHHHHHhcCHHHHHHhc
Confidence 3444444444443 444455567999999999999998875333 33349999961 1111 125
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
++.+||.
T Consensus 149 ~vr~VIV 155 (814)
T COG1201 149 DVRYVIV 155 (814)
T ss_pred CCcEEEe
Confidence 6888876
No 397
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=50.40 E-value=46 Score=22.68 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=30.6
Q ss_pred cEEEEcCCHHHHHHH-HHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChH
Q 047490 19 RAVVLCPTRELSEQV-FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
++|++|.+=---..+ +..++++++..++.+......... ... ...++|++++|++
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e--~~~-~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE--IET-YMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH--Hhh-hcCCCCEEEECCc
Confidence 688888754433333 455666666556655444433221 111 2245799999974
No 398
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=50.18 E-value=36 Score=23.56 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
+...+++++|.+-..+...+..|+..|+. +..+.|++.
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 35678999999888888888899988875 667788764
No 399
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=49.22 E-value=85 Score=25.86 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeE-EecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTV-NYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
+.+-+..+++...+ .+.++-++-.+...++.+++.|++. +..+. .+||-+++++.+.+.++.++ ...+++
T Consensus 90 G~dl~~~ll~~~~~---~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~--s~~dil 161 (243)
T PRK03692 90 GADLWEALMARAGK---EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA--SGAKIV 161 (243)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 44455556555543 4567777778888888888888654 55544 56788877777778888887 554444
No 400
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=49.03 E-value=4.3e+02 Score=29.61 Aligned_cols=117 Identities=11% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec------chhhHHHHHHHhcCceeeecc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM------TKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~------~~~~~~~~~~~~~~~~~~~~~ 161 (323)
.+..-+++||||+..+.. ..+..++...... +-++|++.-+- +......+....-....+...
T Consensus 526 ~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~-------garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i 594 (1960)
T TIGR02760 526 PFSNKDIFVVDEANKLSN----NELLKLIDKAEQH-------NSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDT 594 (1960)
T ss_pred CCCCCCEEEEECCCCCCH----HHHHHHHHHHhhc-------CCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecc
Confidence 345678999999986632 3455555444321 12778776553 223333443321111111111
Q ss_pred ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 162 TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
......+ .........+...+.+..........+++|+..+......+....+.
T Consensus 595 --~rq~~~v---~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 595 --KQQKASV---EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred --cccCcce---eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHH
Confidence 0000011 12222233455556555544333445689999998888877766543
No 401
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=48.65 E-value=39 Score=31.34 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
..|--+||..|+++.|....+.|..- +++++.+-|+..-.. +.-+- ..++|||||+
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi--~~mNILVCTP 198 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERI--SQMNILVCTP 198 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhh--hcCCeEEech
Confidence 35668999999999999999988753 677788888865221 11222 5577999997
No 402
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=48.25 E-value=1.3e+02 Score=24.61 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCCeEEEEecCc-----------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 197 KGNKVMVFCNTL-----------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 197 ~~~~~lvf~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.+.+||+.+.. ..++.+++.|+..|+.|.. +.+++..+..+.+++|.+
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~-~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHV-KNNLTAEEMLEELKEFAE 66 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 345677777763 3799999999999998865 666888888888888876
No 403
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.12 E-value=1.1e+02 Score=27.28 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=41.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc------cccccCC-C
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL------AARGLDL-D 267 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~------~~~Gid~-~ 267 (323)
+..++++.++++.+..+....+. .+.....++|+-+..+ ..++.+ +...++++|+- ...-+|+ .
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e---qie~lk---rgveiiiatPgrlndL~~~n~i~l~s 367 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE---QIEDLK---RGVEIIIATPGRLNDLQMDNVINLAS 367 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh---HHHHHh---cCceEEeeCCchHhhhhhcCeeeeee
Confidence 45789999999988877655443 3555555665544333 344444 44458888862 1223555 5
Q ss_pred CCEEEE
Q 047490 268 VDHVIM 273 (323)
Q Consensus 268 ~~~vi~ 273 (323)
+++++.
T Consensus 368 iTYlVl 373 (629)
T KOG0336|consen 368 ITYLVL 373 (629)
T ss_pred eEEEEe
Confidence 665554
No 404
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.94 E-value=61 Score=22.14 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=33.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRIL 79 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~ 79 (323)
..++|++|-+=--...+.+.++++....++.+.....+...- .....++|+++.+|+.-.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~---~~~~~~~Dvill~pqi~~ 62 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAA---GEKLDDADVVLLAPQVAY 62 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHH---HhhcCCCCEEEECchHHH
Confidence 357888886443334455566666666666554443332211 112234799999998553
No 405
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.87 E-value=36 Score=32.34 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEE
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~s 137 (323)
...++++||||+|.|... ..+.++..+.... ..+.+|+.|
T Consensus 122 ~g~~KV~IIDEvh~Ls~~----a~NaLLKtLEEPP-----~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNT----AFNAMLKTLEEPP-----EYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHH----HHHHHHHhcccCC-----CCeEEEEEE
Confidence 346899999999988543 3444444443321 123566655
No 406
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=47.84 E-value=38 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCcc-cHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLN-SSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~-~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.++.++++||.+-. .+...+..|+..|+. +..+.|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 36679999999854 466677888888875 667888864
No 407
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=47.39 E-value=91 Score=27.72 Aligned_cols=119 Identities=10% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCccEEEEcCCHH-HHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeCh-HHHHHHHHcCCCCCCCCc
Q 047490 16 RRPRAVVLCPTRE-LSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP-GRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 16 ~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp-~~l~~~~~~~~~~~~~~~ 93 (323)
++.+++++-|+.. +-.-+...+++.....++....-...... .......+..|++..- +...++ .....+.
T Consensus 31 ~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~ 103 (396)
T TIGR01547 31 KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNTGKKFIFKGLNDKPNKL-----KSGAGIA 103 (396)
T ss_pred CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCCCeEEEeecccCChhHh-----hCcceee
Confidence 5688999989887 66666777776655544431111111100 1111122445666553 222111 1123368
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHH
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEE 151 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~ 151 (323)
++.+||+..+.. ..+..+...++.. ++ . ..+.+|.+|.....-+...+
T Consensus 104 ~~~idEa~~~~~----~~~~~l~~rlr~~----~~-~-~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 104 IIWFEEASQLTF----EDIKELIPRLRET----GG-K-KFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred eehhhhhhhcCH----HHHHHHHHHhhcc----CC-c-cEEEEEcCcCCCccHHHHHH
Confidence 999999997632 3455555554321 11 1 25788888865444333333
No 408
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=47.17 E-value=44 Score=22.83 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=37.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcEEeec
Q 047490 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKYLVLD 98 (323)
Q Consensus 20 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~vIiD 98 (323)
+|++|-+---..-+.+.++++....++.......+...- .....++|+++++|+--...-.-. .....+....++|
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~---~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL---EEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH---HHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcC
Confidence 455554322222234455666555555544333332211 112345799999998553221111 1122345566666
Q ss_pred chh
Q 047490 99 EAD 101 (323)
Q Consensus 99 E~h 101 (323)
=.+
T Consensus 79 ~~~ 81 (96)
T cd05564 79 MMD 81 (96)
T ss_pred hHh
Confidence 544
No 409
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=47.02 E-value=33 Score=33.77 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE 61 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (323)
..+.++||.|+|+.-+..+++.+++.. + ..++|+....++.
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g----~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEK----F--ELLTGTLRGAERD 310 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcC----C--eEeeCCCCHHHHh
Confidence 346789999999999999999998753 2 6777776554433
No 410
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=46.61 E-value=40 Score=24.15 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=27.7
Q ss_pred CCCCeEEEEec-CcccHHHHHHHHhhC------------CC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCN-TLNSSRAVDHFLNEN------------QI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~-~~~~~~~l~~~l~~~------------~~-~~~~~~~~~~ 233 (323)
++..++++||. +-..+...+..|+.. ++ .+..+.|++.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 45678999997 767777777777763 43 5777888764
No 411
>PF15586 Imm47: Immunity protein 47
Probab=46.52 E-value=38 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=24.2
Q ss_pred CCEEEeChHHHHHHHHcCCCCCCCCcEEeecchh
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
.+|.|+||+.|.+...+... +-.=.++|++|.+
T Consensus 45 F~v~VcTP~wL~~~~~~~~~-~~gr~~LIv~~yd 77 (116)
T PF15586_consen 45 FQVFVCTPKWLSKNCWKPGI-LWGRHMLIVEEYD 77 (116)
T ss_pred EEEEEEcHHHHHHhhcCCcc-eeccceEEEecCC
Confidence 68999999999886665433 2234578999886
No 412
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=45.18 E-value=82 Score=28.75 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=37.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----C-CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNE----N-QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~----~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+-.++|.|++++.|-..+..+++ . ++.+.++-|+.....-.+ +.. ..++++|||+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---kl~---k~~niliATP 213 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---KLV---KGCNILIATP 213 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---Hhh---ccccEEEeCC
Confidence 556899999999988877655543 3 677777888765322222 222 3567999997
No 413
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=44.90 E-value=29 Score=32.05 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
..+++..|+||+|++.... ++.++.-+.+. +..+.||+.|-.+
T Consensus 117 ~~ryKVyiIDEvHMLS~~a----fNALLKTLEEP-----P~hV~FIlATTe~ 159 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQA----FNALLKTLEEP-----PSHVKFILATTEP 159 (515)
T ss_pred cccceEEEEecHHhhhHHH----HHHHhcccccC-----ccCeEEEEecCCc
Confidence 5678999999999885433 34444444332 2344566655544
No 414
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=44.54 E-value=3.1e+02 Score=26.79 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.4
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYH 229 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 229 (323)
.+.+.|.+.+...+..+...|...+++.....
T Consensus 342 ~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g 373 (715)
T TIGR01075 342 LDECAVLYRSNAQSRVLEEALLQASIPYRIYG 373 (715)
T ss_pred ccCEEEEEecCchHHHHHHHHHHcCCCEEEeC
Confidence 35678889999999999999999988876543
No 415
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=44.49 E-value=41 Score=25.97 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=57.1
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe-------eEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS-------TVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
..+++.+.+-+.+.+.. ...++.|=-....-.+++.+++.+.. +.-||+++.......++.+...+-....|
T Consensus 18 ~~ri~ela~~I~~~y~g-~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdV 96 (178)
T COG0634 18 KARIKELAAQITEDYGG-KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDV 96 (178)
T ss_pred HHHHHHHHHHHHHhhCC-CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeE
Confidence 45677777777776543 56677777777777777777765433 33477888777666666665554344567
Q ss_pred EEEecccccccCC
Q 047490 254 LVCTDLAARGLDL 266 (323)
Q Consensus 254 lv~t~~~~~Gid~ 266 (323)
|+--+++.+|..+
T Consensus 97 LiVeDIiDsG~TL 109 (178)
T COG0634 97 LIVEDIIDSGLTL 109 (178)
T ss_pred EEEecccccChhH
Confidence 8887887777765
No 416
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=44.37 E-value=1.6e+02 Score=27.91 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=38.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF 276 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~ 276 (323)
..+.+.|.|.+.+.|..+...|++... .......-+.|.. |. .|--.....|+. +++||.+++
T Consensus 654 ~~etiaVi~kt~~d~~~~~d~lre~~~----------~r~I~k~nq~f~~--~~---~vipvy~aKGlE--FD~viv~d~ 716 (747)
T COG3973 654 GSETIAVICKTDHDCKAVMDSLREKDS----------QRTIAKENQRFHH--GS---DVIPVYDAKGLE--FDHVIVVDP 716 (747)
T ss_pred CCCceEEECCcHHHHHHHHHHHhhcch----------hhHHHhhcccccC--Cc---eEEEeeecccce--eeeEEEecc
Confidence 346788999999999999998875431 1122222334443 44 223334566776 667788776
No 417
>PRK08181 transposase; Validated
Probab=44.32 E-value=42 Score=28.12 Aligned_cols=72 Identities=8% Similarity=0.106 Sum_probs=39.5
Q ss_pred CCCCCEEEeChHHHHHHHHcC----C-----CCCCCCcEEeecchhhhhcCCC-hhhHHHHHhhhccccCCCCCCCceEE
Q 047490 65 NNPIDMVVGTPGRILQHIEDG----N-----MVYGDIKYLVLDEADTMFDRGF-GPDIRKFLVPLKNRASKPNGQGFQTV 134 (323)
Q Consensus 65 ~~~~~Iii~Tp~~l~~~~~~~----~-----~~~~~~~~vIiDE~h~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~i 134 (323)
..+..+++.+...|...+... . ..+.+.+++|+||.+....... ...+-.++....... ++|
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~--------s~I 203 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERR--------SIL 203 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC--------CEE
Confidence 345678887877776654321 1 1256789999999997643221 122333443322211 566
Q ss_pred EEEeecchhh
Q 047490 135 LVSATMTKAV 144 (323)
Q Consensus 135 ~~sat~~~~~ 144 (323)
+.|..++...
T Consensus 204 iTSN~~~~~w 213 (269)
T PRK08181 204 ITANQPFGEW 213 (269)
T ss_pred EEcCCCHHHH
Confidence 6666655443
No 418
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=44.14 E-value=85 Score=31.42 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred ccCChhHHH-HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 177 LSGSENKLE-ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 177 ~~~~~~k~~-~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...++.|.- .++.++.... .+.+++|.++++..|...++.+.. .+..+..+.|+++...+... + .+
T Consensus 114 aqTGeGKTLAf~LP~l~~aL-~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~---y-----~~ 184 (970)
T PRK12899 114 MQTGEGKTLTAVMPLYLNAL-TGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI---Y-----QC 184 (970)
T ss_pred eCCCCChHHHHHHHHHHHHh-hcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH---c-----CC
Confidence 344555543 3333332222 234688889999999988887754 37888899999997776533 2 24
Q ss_pred CEEEEecc
Q 047490 252 PTLVCTDL 259 (323)
Q Consensus 252 ~ilv~t~~ 259 (323)
+|+++|+.
T Consensus 185 DIVygTPg 192 (970)
T PRK12899 185 DVVYGTAS 192 (970)
T ss_pred CEEEECCC
Confidence 69999974
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=43.74 E-value=20 Score=28.73 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=24.3
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
....++|+||++.-++......+..++..+... .|+|++|-.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~--------~Q~ii~Th~ 198 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQ--------SQFIITTHN 198 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT--------SEEEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccc--------ccccccccc
Confidence 456799999999766654444555555544422 399888643
No 420
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=43.05 E-value=33 Score=30.63 Aligned_cols=61 Identities=11% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeCh
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTP 75 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp 75 (323)
+..--++||+|-|+.=++.+.+.+.+-+. ...++++++|+....++...+ +.+..++|||.
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg-~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd 566 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGG-KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD 566 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCC-ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh
Confidence 33446899999999999998888888775 467999999998777666554 23456777773
No 421
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=42.90 E-value=72 Score=20.73 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=29.1
Q ss_pred cEEEEcCCHH-HHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeCh
Q 047490 19 RAVVLCPTRE-LSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75 (323)
Q Consensus 19 ~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp 75 (323)
+++++|++-- ...-+...++++++.... ....+-.+. ......++|++++|-
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~~~--v~~~~~~~~---~~~~~~~~DlIitT~ 54 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEIEI--IDVISLREL---EEVDLDDYDLIISTV 54 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCceE--EEEEeHHHH---hhCcccCCCEEEEcc
Confidence 6889998764 344566777777764433 122221111 111234579999995
No 422
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=42.86 E-value=78 Score=24.82 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=41.6
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN 221 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 221 (323)
-.|......+.....+.+...+..-+..+.+++++++.....+.+.+.|++.
T Consensus 19 g~H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~ 70 (191)
T PF14417_consen 19 GDHICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKA 70 (191)
T ss_pred CceEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhc
Confidence 3566666666777888888988888888999999998777888888888654
No 423
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.69 E-value=66 Score=22.46 Aligned_cols=82 Identities=6% Similarity=-0.016 Sum_probs=41.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~vIi 97 (323)
++|++|-+---..-+.+.++++....++.+..-..+...-.. .....++|+++++|+.=..+-.-. .....++.+.++
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~-~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEK-AIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHH-hhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEe
Confidence 467777543333344455555555556554443333221111 111235799999998553321111 112335678888
Q ss_pred cchh
Q 047490 98 DEAD 101 (323)
Q Consensus 98 DE~h 101 (323)
|-.+
T Consensus 82 ~~~~ 85 (104)
T PRK09590 82 PPQA 85 (104)
T ss_pred CHHH
Confidence 8877
No 424
>PRK05320 rhodanese superfamily protein; Provisional
Probab=42.62 E-value=36 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCH
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPA 234 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 234 (323)
++.++++||.+-..++..+..|++.|+. +..+.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 5679999999999999999999999885 7788899854
No 425
>PRK10536 hypothetical protein; Provisional
Probab=42.44 E-value=32 Score=28.55 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=17.9
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNR 122 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~ 122 (323)
++||+||++.+. ...+..++..+...
T Consensus 178 ~~vIvDEaqn~~----~~~~k~~ltR~g~~ 203 (262)
T PRK10536 178 AVVILDEAQNVT----AAQMKMFLTRLGEN 203 (262)
T ss_pred CEEEEechhcCC----HHHHHHHHhhcCCC
Confidence 799999999652 35566666666543
No 426
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=42.37 E-value=46 Score=31.79 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=18.6
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
...++.+||||+|+|.. ...+.++..+.
T Consensus 117 ~g~~KV~IIDEah~Ls~----~a~NALLKtLE 144 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR----HSFNALLKTLE 144 (647)
T ss_pred cCCCEEEEEechHhCCH----HHHHHHHHHHH
Confidence 35688999999998854 33444444443
No 427
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=42.19 E-value=28 Score=29.74 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=12.0
Q ss_pred CCCcEEeecchhhh
Q 047490 90 GDIKYLVLDEADTM 103 (323)
Q Consensus 90 ~~~~~vIiDE~h~~ 103 (323)
...+++|+||+|.+
T Consensus 99 ~~~~vliiDe~d~l 112 (316)
T PHA02544 99 GGGKVIIIDEFDRL 112 (316)
T ss_pred CCCeEEEEECcccc
Confidence 45789999999987
No 428
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.14 E-value=74 Score=28.89 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=58.4
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
++..+......++||..||=+-+.=+...+..+.. ...+..++|......+...+ .....+++|| +. .
T Consensus 246 lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~--~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T-----DV-a 317 (567)
T KOG0345|consen 246 LVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLK--KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT-----DV-A 317 (567)
T ss_pred HHHHHhccccccEEEEecCcchHHHHHHHHHHHhC--CCcEEEecchhcchhHHHHHHHHHhccCceEEee-----hh-h
Confidence 34455566678999999999999988888888844 45888899987766443332 1234688888 33 3
Q ss_pred cCCCCCCCCcEEee
Q 047490 84 DGNMVYGDIKYLVL 97 (323)
Q Consensus 84 ~~~~~~~~~~~vIi 97 (323)
...+..+++++||=
T Consensus 318 ARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 318 ARGLDIPGIDLVVQ 331 (567)
T ss_pred hccCCCCCceEEEe
Confidence 34677888998873
No 429
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.12 E-value=45 Score=30.52 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=17.6
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhh
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPL 119 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~ 119 (323)
..++.+|+||+|.+.. .....++..+
T Consensus 120 g~~KV~IIDEah~Ls~----~A~NALLKtL 145 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD----QSFNALLKTL 145 (484)
T ss_pred CCCEEEEEechhhcCH----HHHHHHHHHh
Confidence 4678999999998854 3344444444
No 430
>PLN03025 replication factor C subunit; Provisional
Probab=41.95 E-value=33 Score=29.50 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=13.2
Q ss_pred CCCcEEeecchhhhhc
Q 047490 90 GDIKYLVLDEADTMFD 105 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~ 105 (323)
...+++|+||+|.+..
T Consensus 98 ~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 98 GRHKIVILDEADSMTS 113 (319)
T ss_pred CCeEEEEEechhhcCH
Confidence 4578999999998754
No 431
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=41.88 E-value=1.6e+02 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=36.6
Q ss_pred CCCeEEEEec-CcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 197 KGNKVMVFCN-TLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 197 ~~~~~lvf~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
++.++++||. +-..+..++..|...|+.+..+.|++..- +..+++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHhh
Confidence 5678999995 44567788889998898888899998643 4555555553
No 432
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=41.48 E-value=80 Score=25.39 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=15.6
Q ss_pred CCEEEeC-hHHHHHHHHcCCCCCCCCcEEeec
Q 047490 68 IDMVVGT-PGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 68 ~~Iii~T-p~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
++++++- |+.++. .+..+|++++|
T Consensus 98 vEfvvg~~~e~~~~-------~~~~iDF~vVD 122 (218)
T PF07279_consen 98 VEFVVGEAPEEVMP-------GLKGIDFVVVD 122 (218)
T ss_pred ceEEecCCHHHHHh-------hccCCCEEEEe
Confidence 4677775 444442 25678899997
No 433
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=41.41 E-value=54 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=19.0
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
....+++|+||+|.+.. .....++..+.
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le 121 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLE 121 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhc
Confidence 46788999999998743 33444555553
No 434
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=41.40 E-value=77 Score=31.16 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=41.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHh----hCCCeeEEecCCCC-HHHHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLN----ENQISTVNYHGEVP-AQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~-~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.|..+.|.+++...|..-++.+. ..|+.+..+.|+++ +.+++.. ..++|+++|+
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~--------y~~dIvygT~ 176 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI--------YEADIIYTTN 176 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh--------cCCCEEEECC
Confidence 57799999999998887766554 45899999999999 7776632 2256888884
No 435
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.31 E-value=39 Score=29.36 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=38.0
Q ss_pred CeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.=.+|++++++.|..+++.|... +.++.++.|+++.-.....+ +.+-.++++|+
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L------~~rPHvVvatP 133 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL------SDRPHVVVATP 133 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc------ccCCCeEecCc
Confidence 34689999999999999998764 67888899998733332221 13334677775
No 436
>PTZ00293 thymidine kinase; Provisional
Probab=41.17 E-value=70 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=16.7
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
.++++|.+||+| |.+.+..+...+.
T Consensus 76 ~~~dvI~IDEaQ------Ff~~i~~~~~~l~ 100 (211)
T PTZ00293 76 KNYDVIAIDEGQ------FFPDLVEFSEAAA 100 (211)
T ss_pred cCCCEEEEEchH------hhHhHHHHHHHHH
Confidence 568999999999 3344444444443
No 437
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=40.90 E-value=86 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.6
Q ss_pred ChHHHHHHHHcCCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+....+.++++.++.+||-.
T Consensus 39 tp~~~y~~L~~~~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 39 SPIALLEALAAQPLDWSRIHLFLGDERY 66 (233)
T ss_pred cHHHHHHHHhhCCCCcceEEEEEecccc
Confidence 7777777776667788999999999954
No 438
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=40.60 E-value=36 Score=30.43 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
++-+|||.+-......=...|.....++.-+.+.|+..+|.+++.+.......+++|--|+
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 3488999999888887778888888888889999999999999999988556677876664
No 439
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=40.58 E-value=1e+02 Score=22.72 Aligned_cols=49 Identities=4% Similarity=-0.041 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecC---cccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNT---LNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~---~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++..+. .....++|+||.+ -..+-.+.-.|+..|.. +.++.|+++
T Consensus 82 ~~~~~~~~~G--I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKG--IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcC--CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 4444444332 3456799999975 34455666667767654 677888764
No 440
>PF12846 AAA_10: AAA-like domain
Probab=40.44 E-value=26 Score=29.43 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred CCCcEEeecchhhhhcCC-ChhhHHHHHhhhcc
Q 047490 90 GDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKN 121 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~ 121 (323)
..-.++++||+|.+.... ....+..++...+.
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk 251 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRK 251 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHh
Confidence 345688999999988753 33344555555443
No 441
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=40.22 E-value=50 Score=28.95 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
...++++||||+|.|.. ...+.++..+.... .+..++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~----~aanaLLk~LEEpp-----~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR----NAANAILKTLEEPP-----ARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCH----HHHHHHHHHHhcCC-----CCceEEEEECC
Confidence 45788999999998743 33444554443321 12356666544
No 442
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.14 E-value=58 Score=22.50 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=39.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~vIi 97 (323)
+++++|-.-.--.-+++.++++....++.+......... .....+++|+++.+|+.=..+-.-. ...-..+...++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e---~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGS---HYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHH---HHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEe
Confidence 356666433333334445555555555544333222111 1122345799999998543321111 112234667888
Q ss_pred cchhh
Q 047490 98 DEADT 102 (323)
Q Consensus 98 DE~h~ 102 (323)
|..+.
T Consensus 79 ~~~~Y 83 (99)
T cd05565 79 TGKQY 83 (99)
T ss_pred CHHHH
Confidence 87763
No 443
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.14 E-value=64 Score=30.99 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.3
Q ss_pred CCCcEEeecchhhhhc
Q 047490 90 GDIKYLVLDEADTMFD 105 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~ 105 (323)
...+.+||||+|++..
T Consensus 117 gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 117 GRFKVYLIDEVHMLST 132 (702)
T ss_pred CCcEEEEEechHhcCH
Confidence 4678999999998754
No 444
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=39.83 E-value=33 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=21.5
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
-++++||+|++... ....++..+..- .++++.||-.+
T Consensus 106 tiLflDEIHRfnK~----QQD~lLp~vE~G---------~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFNKA----QQDALLPHVENG---------TIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcChh----hhhhhhhhhcCC---------eEEEEeccCCC
Confidence 47899999986432 222223222211 68888888543
No 445
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=39.59 E-value=72 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=29.7
Q ss_pred CCCCeEEEEec-CcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCN-TLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
+.+.++++||. +-..+..++..|+..|+.+..+.|++.
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~ 110 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYK 110 (311)
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHH
Confidence 34446999995 556688888999999998888888864
No 446
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=39.55 E-value=87 Score=25.22 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC-CCCCCCcEEeecchh
Q 047490 28 ELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN-MVYGDIKYLVLDEAD 101 (323)
Q Consensus 28 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~-~~~~~~~~vIiDE~h 101 (323)
+++..+.+.+++.....+.-...+.|| .||..+.+.+-+.. +.++++.++.+||-.
T Consensus 6 ~~a~~i~~~i~~~i~~~~~~~l~lsGG------------------stp~~~y~~L~~~~~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 6 ALADRIAEALAAAIAKRGRFSLALSGG------------------STPKPLYELLAAAPALDWSKVHVFLGDERC 62 (219)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEECCC------------------ccHHHHHHHhccccCCCCceEEEEEeeccc
Confidence 455666666665544333334444444 27777777766554 778999999999965
No 447
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.49 E-value=64 Score=30.50 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEE
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~s 137 (323)
....+++||||+|.+.. ...+.++..+.... ..+.+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~----~A~NALLK~LEEpp-----~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT----AGFNALLKIVEEPP-----EHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCH----HHHHHHHHHHhcCC-----CCeEEEEEe
Confidence 46789999999998854 34444444444321 233566655
No 448
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=39.20 E-value=2.2e+02 Score=23.56 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=34.9
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEec
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYH 229 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 229 (323)
..+.+|-..|..++......+.++|..-++.+....+.+.++..++...-+|
T Consensus 158 t~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 158 TGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 3355666777777766544556666666677788888888888776655444
No 449
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.06 E-value=70 Score=29.16 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=51.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+++-|-|+.-+.++...+... +.+...++|+....++.+.+ ...++++|+| ... ...+..++++
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT-----~Va-aRGlDi~~V~ 407 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSN----GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVAT-----NVA-ARGLDIPNVK 407 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcC----CCCceeecchhhhhHHHHHHHHhhcCCcceEEEe-----hhh-hcCCCCCCCc
Confidence 37888899999888888777665 56888899987766665544 3457899999 333 3456777887
Q ss_pred EEee
Q 047490 94 YLVL 97 (323)
Q Consensus 94 ~vIi 97 (323)
.||.
T Consensus 408 hVIn 411 (482)
T KOG0335|consen 408 HVIN 411 (482)
T ss_pred eeEE
Confidence 7765
No 450
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.01 E-value=58 Score=32.43 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.9
Q ss_pred CCCcEEeecchhhhh
Q 047490 90 GDIKYLVLDEADTMF 104 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~ 104 (323)
..++++||||+|+|.
T Consensus 118 gk~KViIIDEAh~LT 132 (944)
T PRK14949 118 GRFKVYLIDEVHMLS 132 (944)
T ss_pred CCcEEEEEechHhcC
Confidence 468899999999884
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=38.96 E-value=39 Score=24.03 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.2
Q ss_pred CcEEeecchhhhhcCC
Q 047490 92 IKYLVLDEADTMFDRG 107 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~ 107 (323)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999987643
No 452
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=38.50 E-value=22 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCEEEeChHHHHHHH--HcCCCCCCCCcEEeecchhhh
Q 047490 68 IDMVVGTPGRILQHI--EDGNMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~--~~~~~~~~~~~~vIiDE~h~~ 103 (323)
++|||=++.-+++-- ..-+..++.=..|||||||.+
T Consensus 200 ~nvivYsYhYllDPkIa~~VSkels~~svVvFDEAHNI 237 (755)
T KOG1131|consen 200 ANVIVYSYHYLLDPKIAELVSKELSKESVVVFDEAHNI 237 (755)
T ss_pred ccEEEEehhhhcChHHHHHHHHhhCcCcEEEecccccc
Confidence 578888876553211 111223566678999999995
No 453
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=38.40 E-value=54 Score=27.18 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.1
Q ss_pred cEEeecchhhhhc
Q 047490 93 KYLVLDEADTMFD 105 (323)
Q Consensus 93 ~~vIiDE~h~~~~ 105 (323)
..+++||+|.+..
T Consensus 107 ~VL~IDE~~~L~~ 119 (261)
T TIGR02881 107 GVLFIDEAYSLAR 119 (261)
T ss_pred CEEEEechhhhcc
Confidence 5899999999864
No 454
>PRK01415 hypothetical protein; Validated
Probab=38.29 E-value=43 Score=27.66 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.++.++++||.+=..++..+..|++.|+. +..+.|++.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 46679999999999999999999999985 777888865
No 455
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=37.64 E-value=76 Score=25.12 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc---CCCCCCCCcEEeecchh
Q 047490 28 ELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED---GNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 28 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~---~~~~~~~~~~vIiDE~h 101 (323)
+++..+.+.+++.....+.-...+.|| +||..+...+.. ..+.++++.++.+||-.
T Consensus 4 ~~a~~i~~~i~~~i~~~~~~~i~LsgG------------------stp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 4 AVAEAIAEAIEEAIAERGRAVIALSGG------------------STPKPLYQELAKLHKERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEE--S------------------CTHHHHHHHHHHHHHTCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCC------------------HHHHHHHHHHhhhccccCChhHeEEEeCcccc
Confidence 455555555555544434444445554 156666555443 35788999999999986
No 456
>PRK04132 replication factor C small subunit; Provisional
Probab=37.05 E-value=55 Score=32.42 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=12.5
Q ss_pred CCcEEeecchhhhhc
Q 047490 91 DIKYLVLDEADTMFD 105 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~ 105 (323)
+++++|+||+|.|..
T Consensus 630 ~~KVvIIDEaD~Lt~ 644 (846)
T PRK04132 630 SFKIIFLDEADALTQ 644 (846)
T ss_pred CCEEEEEECcccCCH
Confidence 578999999998753
No 457
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=37.01 E-value=88 Score=25.14 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEE---ecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.|.+.+.+.. .++++++.+.. .....+.+.|++.|..+.. |.. .+........+.+.. +...+++-|+
T Consensus 104 s~~L~~~l~~~~-~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~--~~~~~v~ftS 176 (231)
T PF02602_consen 104 SEGLAELLKEQL-RGKRVLILRGE-GGRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDR--GEIDAVVFTS 176 (231)
T ss_dssp HHHHHGGHHHCC-TTEEEEEEESS-SSCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHH--TTTSEEEESS
T ss_pred HHHHHHHHHhhC-CCCeEEEEcCC-CccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHc--CCCCEEEECC
Confidence 355666665433 33566665554 4466788999888866543 444 556677788888887 7766666654
No 458
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.85 E-value=67 Score=30.59 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=18.7
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
....+++||||+|.+.. .....++..+.
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LE 144 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLE 144 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhh
Confidence 45678999999998743 33455555543
No 459
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=36.83 E-value=57 Score=25.29 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=17.3
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhcc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~ 121 (323)
++++|++||+|- |.+.+..+...+..
T Consensus 76 ~~dvI~IDEaQF-----f~~~i~~l~~~~~~ 101 (176)
T PF00265_consen 76 DYDVIGIDEAQF-----FDEQIVQLVEILAN 101 (176)
T ss_dssp TCSEEEESSGGG-----STTTHHHHHHHHHH
T ss_pred CCCEEEEechHh-----hHHHHHHHHHHHHh
Confidence 399999999994 33355555555544
No 460
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=36.57 E-value=13 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISH 42 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~ 42 (323)
+..+||++|+.+..+.+.+.++....
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~ 34 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLE 34 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcc
Confidence 36999999999999999888877653
No 461
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=36.23 E-value=64 Score=26.63 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=42.6
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 223 (323)
.....|.+++..-.-+..+.+.|. ..++.+.+|+++.++++...+.|++.++
T Consensus 113 ~~DavfLDlp~Pw~~i~~~~~~L~---~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 113 DFDAVFLDLPDPWEAIPHAKRALK---KPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp SEEEEEEESSSGGGGHHHHHHHE----EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred cccEEEEeCCCHHHHHHHHHHHHh---cCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 456678888877777888888882 2678999999999999999999998764
No 462
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.78 E-value=69 Score=29.90 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEe
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sa 138 (323)
....+++|+||+|.+.. ...+.++..+.... ..+.+|+.|.
T Consensus 117 ~~~~kVvIIDEad~ls~----~a~naLLK~LEepp-----~~~~fIL~t~ 157 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK----SAFNAMLKTLEEPP-----EHVKFILATT 157 (527)
T ss_pred cCCceEEEEcCcccCCH----HHHHHHHHHHhCCC-----CCEEEEEEeC
Confidence 45688999999998753 33445555554321 2346776663
No 463
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=35.03 E-value=1.9e+02 Score=21.64 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=34.1
Q ss_pred eEEEEecC-------cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 200 KVMVFCNT-------LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 200 ~~lvf~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
+++||+.+ ...+..+.+.|+..++......=.|++..++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 46788886 67888899999988888777766677777776655443
No 464
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=34.91 E-value=1.3e+02 Score=30.10 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=50.1
Q ss_pred eeEEeccCChhHHHHHH-HHhccCC-CCCCeEEEEecCcccHH----HHHHHHhhCC--CeeEEecCCCCHHHHHHHHHh
Q 047490 172 HDFIKLSGSENKLEALL-QVLEPSL-SKGNKVMVFCNTLNSSR----AVDHFLNENQ--ISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~-~~l~~~~-~~~~~~lvf~~~~~~~~----~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~ 243 (323)
+..+.......|.+..+ -++.... ++..+.|++.|+...|. ++.+.....+ ..+..++|+.+..+|+ .
T Consensus 87 ~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~ 162 (851)
T COG1205 87 NVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----A 162 (851)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----H
Confidence 33343444455655433 2332222 23347799999977554 5555555555 6788899999988887 3
Q ss_pred ccccCCCCCEEEEecc
Q 047490 244 FKNEDGDCPTLVCTDL 259 (323)
Q Consensus 244 f~~~~g~~~ilv~t~~ 259 (323)
+.. +..+||++++.
T Consensus 163 ~~~--~pp~IllTNpd 176 (851)
T COG1205 163 IIR--NPPDILLTNPD 176 (851)
T ss_pred HHh--CCCCEEEeCHH
Confidence 334 55668999864
No 465
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.83 E-value=90 Score=28.82 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=19.8
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhcc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~ 121 (323)
....+++|+||+|.+.. ...+.++..+..
T Consensus 114 ~~~~KVvIIDEah~Ls~----~A~NaLLK~LEe 142 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN----SAFNALLKTLEE 142 (491)
T ss_pred cCCceEEEEeChHhCCH----HHHHHHHHHHhC
Confidence 46789999999998744 334555555543
No 466
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=34.72 E-value=44 Score=32.68 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=33.6
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
=++|+|+.|.+.+......++.++...+. ++..++.|-+-|+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~--------~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPE--------NLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCC--------CeEEEEEeccCCC
Confidence 48999999999887777888888877764 4588888887653
No 467
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=34.72 E-value=1.2e+02 Score=20.72 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=28.2
Q ss_pred ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 209 NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 209 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
..++++++..+..+....++++.+++.+...+.+.+.
T Consensus 44 GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 44 GKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred hHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 3567777777777788888888888888887777775
No 468
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=34.35 E-value=1e+02 Score=22.93 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=39.6
Q ss_pred CeEEEEecC--cccHHHHHHHHhhCCCeeEEecCCCCHH-HHHHHHHhccccCCCCCEEEEecc
Q 047490 199 NKVMVFCNT--LNSSRAVDHFLNENQISTVNYHGEVPAQ-ERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 199 ~~~lvf~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
.++++...+ ...++.+...++..+..+..+..++... ..+...+......+.++++|...-
T Consensus 26 ~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 26 RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred eEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345555555 4777778888887888888888776533 445555555543467788887643
No 469
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=34.20 E-value=1.2e+02 Score=18.97 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=30.4
Q ss_pred EEEEe-cCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 201 VMVFC-NTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 201 ~lvf~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
+.+|. +....+..+...|++.++....+.=...++.++++.+...
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 34444 5567888888889988888777766655555655555444
No 470
>PHA00350 putative assembly protein
Probab=33.97 E-value=59 Score=28.98 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.8
Q ss_pred cEEeecchhhhhcC
Q 047490 93 KYLVLDEADTMFDR 106 (323)
Q Consensus 93 ~~vIiDE~h~~~~~ 106 (323)
.+|||||||.+...
T Consensus 83 aLIViDEaq~~~p~ 96 (399)
T PHA00350 83 ALYVIDEAQMIFPK 96 (399)
T ss_pred CEEEEECchhhcCC
Confidence 58999999998653
No 471
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=33.51 E-value=51 Score=32.87 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSIS 41 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~ 41 (323)
+.++||++|+.+.+.++++.+....
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 4589999999999999999987643
No 472
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=33.29 E-value=2e+02 Score=23.01 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=26.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEE
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN 227 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 227 (323)
.+.|++.+......+ +.+++.........+.+.|.+.|..+..
T Consensus 108 ~~~L~~~i~~~~~~~-~~il~~~g~~~~~~l~~~L~~~g~~v~~ 150 (239)
T cd06578 108 SEGLLELLELQDGKG-KRILRPRGGRAREDLAEALRERGAEVDE 150 (239)
T ss_pred HHHHHHHHHhcCCCC-CEEEEEcCcchhHHHHHHHHHCCCEEEE
Confidence 456676666642234 4455555555567888888887765543
No 473
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=33.08 E-value=4.9e+02 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=13.6
Q ss_pred CCCcEEeecchhhhhcC
Q 047490 90 GDIKYLVLDEADTMFDR 106 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~ 106 (323)
..+.+||+||+|.+...
T Consensus 868 r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK 884 (1164)
T ss_pred ccceEEEeehHhhhCcc
Confidence 44678999999998753
No 474
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=33.00 E-value=1.3e+02 Score=30.30 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=41.0
Q ss_pred CCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
|.=.||.|+++..+..+.+.++. .++.+...+|+...++. +.+.++ | +.|+|||+
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkR--g-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKR--G-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhc--C-CceEEecc
Confidence 34578999999999988876654 47888888888765544 455565 6 66888886
No 475
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=32.68 E-value=1.5e+02 Score=21.41 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCCeEEEEecCccc---------HHHHHHHHhh---CCCeeEEecCCCC
Q 047490 197 KGNKVMVFCNTLNS---------SRAVDHFLNE---NQISTVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~---------~~~l~~~l~~---~~~~~~~~~~~~~ 233 (323)
...+++||+.+... +..+.+.|.. .+..+.++.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 45789999987765 6677777776 4567888999864
No 476
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=32.54 E-value=2.8e+02 Score=22.71 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=37.7
Q ss_pred CCCeEEEEecC------------cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 197 KGNKVMVFCNT------------LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 197 ~~~~~lvf~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.+.+||+.+. ...++.+++.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFAS 68 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHh
Confidence 34566777664 3468899999999999886 4666788888888888884
No 477
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.40 E-value=2.3e+02 Score=21.79 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=60.4
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
.|+|-...-+. +.+.+..++..+... ++++.+.|.|..+.....+-..+.-.. ...........-. +
T Consensus 35 ~v~D~~g~~v~--lypdv~~iL~~L~~~-------gv~lavASRt~~P~~A~~~L~~l~i~~---~~~~~~~~~~~F~-~ 101 (169)
T PF12689_consen 35 VVVDSRGEEVS--LYPDVPEILQELKER-------GVKLAVASRTDEPDWARELLKLLEIDD---ADGDGVPLIEYFD-Y 101 (169)
T ss_dssp -EEETT--EE-----TTHHHHHHHHHHC-------T--EEEEE--S-HHHHHHHHHHTT-C-------------CCEC-E
T ss_pred EEEeCCCCEEE--eCcCHHHHHHHHHHC-------CCEEEEEECCCChHHHHHHHHhcCCCc---cccccccchhhcc-h
Confidence 56665554333 678888999888763 458888888876655554444433220 0000111111111 1
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecC-cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNT-LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..+-+ ..|...+-.+.+..-=+... ++|... ....+.+ +..|......-.||+.+.-++-+++|++
T Consensus 102 ~eI~~-gsK~~Hf~~i~~~tgI~y~e-MlFFDDe~~N~~~v----~~lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 102 LEIYP-GSKTTHFRRIHRKTGIPYEE-MLFFDDESRNIEVV----SKLGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp EEESS-S-HHHHHHHHHHHH---GGG-EEEEES-HHHHHHH----HTTT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred hheec-CchHHHHHHHHHhcCCChhH-EEEecCchhcceee----EecCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 22222 35777766666543212334 455544 3443333 3357666677788998888888888864
No 478
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=32.20 E-value=77 Score=29.61 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
....+++|+||+|.+.. .....++..+.... ....+|+.+..
T Consensus 115 ~~~~KVvIIDEad~Lt~----~A~NALLK~LEEpp-----~~t~FIL~ttd 156 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK----EAFNALLKTLEEPP-----SYVKFILATTD 156 (535)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHHhhcC-----CceEEEEEECC
Confidence 46789999999998743 33444444443321 23367766633
No 479
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=32.18 E-value=2.1e+02 Score=26.46 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=26.9
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhc
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSIS 41 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 41 (323)
..++++.-++++-+-|+.|+.++.....++.
T Consensus 200 lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 200 LHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred HhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 3567778899999999999999999988885
No 480
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=31.45 E-value=75 Score=27.39 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 195 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
+.+..++++||++-..+-.++-.|+..|+. +..|.|++.
T Consensus 266 i~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 266 ISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 345679999999977777777788888874 778888754
No 481
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.39 E-value=2.6e+02 Score=21.99 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=39.6
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 223 (323)
+.+..+ ..++.+++.+.+.+.+++++++=+-+.++...+.+.+++.+.
T Consensus 106 iFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 106 IFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred EEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 334444 677888888877778899999999999999999999998887
No 482
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.30 E-value=1.2e+02 Score=27.15 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.6
Q ss_pred CCcEEeecchhhhh
Q 047490 91 DIKYLVLDEADTMF 104 (323)
Q Consensus 91 ~~~~vIiDE~h~~~ 104 (323)
.-.++++||+|++.
T Consensus 92 ~~~vL~IDEi~~l~ 105 (413)
T PRK13342 92 RRTILFIDEIHRFN 105 (413)
T ss_pred CceEEEEechhhhC
Confidence 56789999999864
No 483
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.26 E-value=98 Score=29.30 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
...++++||||+|.+.. ...+.++..+.
T Consensus 117 ~~~~KVvIIdev~~Lt~----~a~naLLk~LE 144 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST----NAFNALLKTLE 144 (576)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHHHH
Confidence 46789999999998753 23444444443
No 484
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=31.17 E-value=60 Score=29.19 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----ccccc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----AARGL 264 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~~~Gi 264 (323)
.+...+|.++|++.|+.++..+... ...+.-+.+.|+..... -+-. +.-.|+|+|+. +..|+
T Consensus 92 ~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~--d~pdIvV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 92 QGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALM--DLPDIVVATPAKLLRHLAAGV 164 (569)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHc--cCCCeEEeChHHHHHHHhhcc
Confidence 4567899999999999988877653 44555566677755544 3333 55569999973 45565
No 485
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.07 E-value=3.1e+02 Score=22.79 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 147 (323)
..+..+|+..+...+..... -....+++.=-+|.+......+.+..++..... |.-... .+...
T Consensus 15 ~~v~~~~~~~~~~~i~~~~~-~~~~~~vv~~N~e~~~~a~~d~e~~~~i~~A~l------------i~pDG~---gvV~~ 78 (253)
T COG1922 15 LPVDNVTWDEAVALILGRIE-QGKPTTVVTLNAEKVLLARKDPEFREILNQADL------------ILPDGI---GVVRA 78 (253)
T ss_pred ceeecCCHHHHHHHHHHHHh-cCCccEEEEcCHHHHHHhccCHHHHHHHhhcCE------------EccCch---hHHHH
Confidence 46777777777666544221 222336666667766654455666666654321 111000 11111
Q ss_pred HHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC--Cee
Q 047490 148 VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ--IST 225 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~ 225 (323)
..+.+..+.. .-..+.+-+..|++...+ ++.++-++-.....++..++.+++.. ..+
T Consensus 79 ar~~~g~~~~------------------~rv~G~Dl~~~Ll~~a~~---~~~~vfllGgkp~V~~~a~~~l~~~~p~l~i 137 (253)
T COG1922 79 ARRLLGQPLP------------------ERVAGTDLVEALLKRAAE---EGKRVFLLGGKPGVAEQAAAKLRAKYPGLKI 137 (253)
T ss_pred HHHHhCccCc------------------ccCChHHHHHHHHHHhCc---cCceEEEecCCHHHHHHHHHHHHHHCCCceE
Confidence 1122211110 011234456666666554 45677777777788888888888763 344
Q ss_pred EE-ecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 226 VN-YHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 226 ~~-~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
.. +||-..+.+.+.++++... .+.+||+
T Consensus 138 vg~h~GYf~~~e~~~i~~~I~~--s~pdil~ 166 (253)
T COG1922 138 VGSHDGYFDPEEEEAIVERIAA--SGPDILL 166 (253)
T ss_pred EEecCCCCChhhHHHHHHHHHh--cCCCEEE
Confidence 44 5588888888888888887 5555543
No 486
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=30.95 E-value=92 Score=21.99 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHH
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHF 217 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~ 217 (323)
...+..+.+.+.+ .++|+++||.+-.-+-.++..
T Consensus 72 ~~~v~~f~~~l~~---~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 72 EEDVEAFADALES---LPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHHHHHHT---TTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCEEEECCCChhHHHHHHH
Confidence 3455666677765 356999999998877766553
No 487
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=30.63 E-value=1.6e+02 Score=23.86 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEE---ecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
..++..+......++++++. ........+.+.|++.|..+.. |.-.............+.. +...+++-|+
T Consensus 112 ~~l~~~l~~~~~~~~~ili~-~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~--~~~d~ivftS 185 (249)
T PRK05928 112 SELLLELPELLLKGKRVLYL-RGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQS--GEVDAVIFTS 185 (249)
T ss_pred hHHHHhChhhhcCCCEEEEE-CCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHh--CCCCEEEECC
Confidence 44444444432234555444 5556788899999988766543 2221111122233444444 5555666654
No 488
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=30.62 E-value=92 Score=24.74 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=34.2
Q ss_pred eEEeccCChhHHHHHHHHhccC--------CCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 173 DFIKLSGSENKLEALLQVLEPS--------LSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~--------~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
.++.-+++..|...+..++... ...+.++++.+++...++.+.+.|.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3445556677776666655554 56778999999999999999888876
No 489
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=30.50 E-value=50 Score=22.39 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHhhCCCeeEE----ecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 215 DHFLNENQISTVN----YHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 215 ~~~l~~~~~~~~~----~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
+++|++.|+.+.. .+.+-...-+..+.+.+++ ++++++|.|..
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~--~~IdlVIn~~~ 69 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKN--GKIDLVINTPY 69 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHT--TSEEEEEEE--
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHc--CCeEEEEEeCC
Confidence 3566677777333 3333222334468889998 88887777754
No 490
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=30.43 E-value=1.4e+02 Score=18.69 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=33.8
Q ss_pred eEEEEec-CcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 200 KVMVFCN-TLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 200 ~~lvf~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
++.+|.. +...|..+.+.|.+.++....+.=...+..+.++.+.-.. +..+.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~--~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS--SVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC--CCcCEEEE
Confidence 4455544 4778889999999998887776554444555554444333 44444443
No 491
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=30.36 E-value=72 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCH
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPA 234 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 234 (323)
++.++++||.+-..++..+..|++.|+. +..+.|++..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 5679999999988899999999999884 8888998764
No 492
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=30.25 E-value=66 Score=22.00 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=35.1
Q ss_pred EEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH------------HHHHHHhccccCCCCCEEEEecccccccC
Q 047490 201 VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE------------RVENLNKFKNEDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~------------r~~~~~~f~~~~g~~~ilv~t~~~~~Gid 265 (323)
+|+.+.....+..+++.+......+....|-+-... +-+.+.+.-. +.-.|+++|+.-.+|-.
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~~iiiatD~D~EGe~ 75 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLK--KADEIIIATDPDREGEL 75 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHH--SCSEEEEEC-SSHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhh--hccEeeecCCCChHHHH
Confidence 367777777888888877644455555555432111 1222333222 34458999988777743
No 493
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=30.02 E-value=54 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=30.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||++-..|..++..|+..|+. +..|.|++.
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 45678999999988888888888888884 778888854
No 494
>PRK12377 putative replication protein; Provisional
Probab=29.78 E-value=2.3e+02 Score=23.43 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=31.2
Q ss_pred eEEEeecCccCCcc-------ccccCCCCCEEEeChHHHHHHHHc----C------CCCCCCCcEEeecchhhh
Q 047490 47 RSTMVSGGGRLRPQ-------EDSLNNPIDMVVGTPGRILQHIED----G------NMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 47 ~~~~~~~~~~~~~~-------~~~~~~~~~Iii~Tp~~l~~~~~~----~------~~~~~~~~~vIiDE~h~~ 103 (323)
....++|....... ......+..+++.|...+...+.. . ...+.+++++|+||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 45567775544321 111233455666655555544332 1 112578999999999754
No 495
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=29.73 E-value=1.3e+02 Score=26.45 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=51.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
+-.++++.+.|++-+.++...+... +..+...+++.....+... + .+...++|+| .++ ...+.+.+
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~----~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlItt-----dl~-argidv~~ 331 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAH----GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITT-----DLL-ARGIDVQQ 331 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhC----CceEEEeecccchhhhhHHHHHhhcCCceEEeec-----ccc-ccccchhh
Confidence 4567889999999999998888554 5688888888776554332 2 3446799999 333 33556777
Q ss_pred CcEEeecch
Q 047490 92 IKYLVLDEA 100 (323)
Q Consensus 92 ~~~vIiDE~ 100 (323)
+.+||.=++
T Consensus 332 ~slvinydl 340 (397)
T KOG0327|consen 332 VSLVVNYDL 340 (397)
T ss_pred cceeeeecc
Confidence 777776444
No 496
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=29.51 E-value=56 Score=31.49 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEe
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sa 138 (323)
....+++||||+|.+.. .....++..+.... ..+.+|+.|.
T Consensus 117 ~gk~KVIIIDEad~Ls~----~A~NALLKtLEEPp-----~~v~fILaTt 157 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSK----SAFNAMLKTLEEPP-----EHVKFILATT 157 (709)
T ss_pred hCCcEEEEEECccccCH----HHHHHHHHHHHhCC-----CCcEEEEEeC
Confidence 45678999999997643 23444444443321 1236666653
No 497
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=29.49 E-value=72 Score=31.83 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred CcEEeecchhhhhcC
Q 047490 92 IKYLVLDEADTMFDR 106 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~ 106 (323)
-.+++|||+|.+...
T Consensus 267 ~~ILfIDEih~l~~~ 281 (852)
T TIGR03346 267 QIILFIDELHTLVGA 281 (852)
T ss_pred CeEEEeccHHHhhcC
Confidence 458999999999853
No 498
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.18 E-value=41 Score=29.47 Aligned_cols=95 Identities=13% Similarity=0.246 Sum_probs=52.9
Q ss_pred CeEEEEecCc---------ccHHHHHHHHhhCCCeeE--EecCCCCHHH-HHHHHHhccccCCCCCEEEEecccccccCC
Q 047490 199 NKVMVFCNTL---------NSSRAVDHFLNENQISTV--NYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTDLAARGLDL 266 (323)
Q Consensus 199 ~~~lvf~~~~---------~~~~~l~~~l~~~~~~~~--~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~ 266 (323)
.+.+|.|+-. ++.+.+.+...+.+..+. .+|.++--.- +.-...... ++.....|++...+.++|+
T Consensus 159 vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls--~~~a~~~it~~saSKtFNl 236 (388)
T COG1168 159 VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLS--ERFADNSITLTSASKTFNL 236 (388)
T ss_pred ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcC--hhhhcceEEEeeccccccc
Confidence 4788888853 355555666666666554 3666543222 110000011 1222356666667888898
Q ss_pred -C--CCEEEEcCCCCCchhhhhhhcccccCCCc
Q 047490 267 -D--VDHVIMFDFPLNSIDYLHRTGRTARMGAK 296 (323)
Q Consensus 267 -~--~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~ 296 (323)
. +..+|+.+ +.....|..++-|.++.+-.
T Consensus 237 aGL~~a~~Ii~n-~~lr~~~~~~l~~~~~~~~n 268 (388)
T COG1168 237 AGLKCAYIIISN-RELRAKFLKRLKRNGLHGPS 268 (388)
T ss_pred hhhhheeEEecC-HHHHHHHHHHHHHhcCCCCc
Confidence 6 44555544 44557788888777776533
No 499
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=28.77 E-value=85 Score=27.55 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||++-..+...+..|+..|+. +..+.|++.
T Consensus 312 ~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 312 SAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 45678999999988888999999988885 677888864
No 500
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=28.71 E-value=1.1e+02 Score=27.19 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=11.1
Q ss_pred CcEEeecchhhhh
Q 047490 92 IKYLVLDEADTMF 104 (323)
Q Consensus 92 ~~~vIiDE~h~~~ 104 (323)
.-+||+||+|.+.
T Consensus 139 ~~viviDE~d~l~ 151 (394)
T PRK00411 139 VLIVALDDINYLF 151 (394)
T ss_pred EEEEEECCHhHhh
Confidence 4578999999987
Done!