Query 047490
Match_columns 323
No_of_seqs 124 out of 1423
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 20:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.5E-47 5E-52 340.6 31.0 296 15-322 127-424 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 4.1E-46 1.4E-50 330.1 27.3 296 14-321 102-398 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1.3E-45 4.4E-50 327.6 29.6 299 16-322 100-399 (417)
4 3eiq_A Eukaryotic initiation f 100.0 2.9E-45 9.9E-50 325.0 26.8 296 14-321 105-402 (414)
5 1s2m_A Putative ATP-dependent 100.0 5.4E-44 1.9E-48 315.4 30.1 292 15-320 87-379 (400)
6 1hv8_A Putative ATP-dependent 100.0 2.9E-43 9.9E-48 307.2 30.7 294 9-321 66-360 (367)
7 1xti_A Probable ATP-dependent 100.0 2.8E-43 9.5E-48 310.0 29.2 294 14-320 73-372 (391)
8 3pey_A ATP-dependent RNA helic 100.0 1.2E-42 4.1E-47 306.3 31.5 291 13-319 71-370 (395)
9 3fht_A ATP-dependent RNA helic 100.0 1.3E-42 4.3E-47 307.8 31.5 294 13-321 91-395 (412)
10 1fuu_A Yeast initiation factor 100.0 1.1E-44 3.7E-49 319.2 13.7 295 13-320 85-380 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 3.2E-42 1.1E-46 317.1 25.5 301 15-319 93-411 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 4.6E-42 1.6E-46 315.7 25.8 300 16-319 145-462 (563)
13 2z0m_A 337AA long hypothetical 100.0 2.6E-41 8.8E-46 291.5 26.4 280 17-320 56-336 (337)
14 3fho_A ATP-dependent RNA helic 100.0 8.6E-42 2.9E-46 309.0 23.3 291 14-320 186-485 (508)
15 3fmp_B ATP-dependent RNA helic 100.0 1.7E-42 5.7E-47 312.6 15.7 292 14-320 159-461 (479)
16 2v1x_A ATP-dependent DNA helic 100.0 1.9E-39 6.5E-44 296.6 25.2 283 17-314 84-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 6.6E-39 2.3E-43 290.2 22.7 279 17-315 65-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.8E-39 9.7E-44 286.4 19.4 282 15-319 62-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-38 6.4E-43 291.6 17.9 286 17-309 55-511 (556)
20 3tbk_A RIG-I helicase domain; 100.0 7E-38 2.4E-42 287.7 18.9 291 17-314 52-515 (555)
21 1wp9_A ATP-dependent RNA helic 100.0 1.2E-36 4E-41 275.0 24.0 283 15-309 50-478 (494)
22 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-36 5.3E-41 288.5 21.8 286 17-309 296-752 (797)
23 2ykg_A Probable ATP-dependent 100.0 1.9E-36 6.6E-41 285.0 20.3 292 17-314 61-524 (696)
24 2xgj_A ATP-dependent RNA helic 100.0 5.9E-35 2E-39 280.5 27.9 274 16-314 128-508 (1010)
25 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-35 4.5E-40 285.0 23.4 287 17-309 296-752 (936)
26 3l9o_A ATP-dependent RNA helic 100.0 1.5E-35 5E-40 287.0 21.5 273 16-313 226-605 (1108)
27 2va8_A SSO2462, SKI2-type heli 100.0 2E-34 6.8E-39 271.6 27.9 269 17-307 75-409 (715)
28 2zj8_A DNA helicase, putative 100.0 5.4E-35 1.9E-39 275.3 23.4 271 17-308 68-389 (720)
29 2p6r_A Afuhel308 helicase; pro 100.0 7.1E-35 2.4E-39 273.8 24.0 274 17-308 68-390 (702)
30 4ddu_A Reverse gyrase; topoiso 100.0 2.6E-35 8.7E-40 285.2 20.7 284 15-319 119-503 (1104)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 2.7E-35 9.2E-40 285.1 17.0 282 16-320 98-468 (1054)
32 4gl2_A Interferon-induced heli 100.0 2.9E-35 9.9E-40 277.1 15.0 285 17-306 56-519 (699)
33 4a4z_A Antiviral helicase SKI2 100.0 1.6E-33 5.4E-38 270.6 24.8 275 16-314 81-502 (997)
34 1tf5_A Preprotein translocase 100.0 1.2E-33 4.3E-38 259.4 21.2 282 17-308 124-547 (844)
35 1gm5_A RECG; helicase, replica 100.0 2.2E-34 7.5E-39 268.7 15.3 274 17-316 417-707 (780)
36 2eyq_A TRCF, transcription-rep 100.0 1.6E-32 5.4E-37 267.3 27.8 264 16-306 651-922 (1151)
37 4f92_B U5 small nuclear ribonu 100.0 4.4E-33 1.5E-37 278.5 23.4 285 15-311 132-478 (1724)
38 2fsf_A Preprotein translocase 100.0 4.2E-33 1.4E-37 255.3 20.4 284 16-308 114-585 (853)
39 2oca_A DAR protein, ATP-depend 100.0 1.6E-33 5.4E-38 256.0 16.4 267 17-304 157-453 (510)
40 4f92_B U5 small nuclear ribonu 100.0 1.8E-32 6.3E-37 274.1 23.4 297 7-314 962-1316(1724)
41 1nkt_A Preprotein translocase 100.0 5.8E-32 2E-36 248.2 22.7 283 17-309 152-620 (922)
42 2fwr_A DNA repair protein RAD2 100.0 1E-31 3.5E-36 241.8 16.2 251 17-305 133-453 (472)
43 3o8b_A HCV NS3 protease/helica 100.0 1.7E-31 5.9E-36 243.0 15.8 241 17-310 257-518 (666)
44 1yks_A Genome polyprotein [con 100.0 6.3E-33 2.2E-37 246.0 6.0 248 16-319 36-315 (440)
45 1z63_A Helicase of the SNF2/RA 100.0 2.4E-30 8.2E-35 234.5 21.8 268 14-306 83-453 (500)
46 2whx_A Serine protease/ntpase/ 100.0 3E-31 1E-35 243.3 15.9 258 16-320 214-495 (618)
47 2jlq_A Serine protease subunit 100.0 1.1E-30 3.7E-35 232.7 16.3 242 16-305 47-310 (451)
48 3dmq_A RNA polymerase-associat 100.0 1E-30 3.6E-35 251.5 15.5 137 180-320 487-627 (968)
49 2xau_A PRE-mRNA-splicing facto 100.0 1.7E-30 5.6E-35 244.0 14.1 266 17-308 140-445 (773)
50 2v6i_A RNA helicase; membrane, 100.0 6.5E-30 2.2E-34 226.3 16.7 241 16-303 30-288 (431)
51 3rc3_A ATP-dependent RNA helic 100.0 5E-29 1.7E-33 229.4 23.1 246 18-303 180-442 (677)
52 3h1t_A Type I site-specific re 100.0 4.6E-30 1.6E-34 236.9 15.4 254 16-295 234-545 (590)
53 2wv9_A Flavivirin protease NS2 100.0 1.6E-29 5.4E-34 233.3 17.0 256 16-318 269-548 (673)
54 2z83_A Helicase/nucleoside tri 100.0 1E-29 3.4E-34 226.9 13.2 243 16-306 49-313 (459)
55 3mwy_W Chromo domain-containin 100.0 9.1E-28 3.1E-32 227.8 22.9 285 15-316 284-696 (800)
56 2hjv_A ATP-dependent RNA helic 100.0 8.8E-28 3E-32 184.6 16.9 150 167-321 7-157 (163)
57 1z3i_X Similar to RAD54-like; 100.0 4.5E-27 1.6E-31 217.9 24.7 108 197-306 415-528 (644)
58 2rb4_A ATP-dependent RNA helic 100.0 9.5E-28 3.3E-32 186.7 16.7 151 167-321 5-162 (175)
59 1fuk_A Eukaryotic initiation f 100.0 1.2E-27 4.2E-32 184.2 16.7 149 169-321 3-152 (165)
60 2p6n_A ATP-dependent RNA helic 100.0 1.2E-27 4.1E-32 188.1 16.2 165 152-322 12-178 (191)
61 3jux_A Protein translocase sub 100.0 5.8E-27 2E-31 211.0 21.8 171 132-309 411-590 (822)
62 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.5E-27 8.5E-32 185.5 14.7 153 166-322 16-169 (185)
63 1t5i_A C_terminal domain of A 99.9 4.1E-27 1.4E-31 182.3 14.6 148 168-320 4-153 (172)
64 3eaq_A Heat resistant RNA depe 99.9 1.6E-26 5.5E-31 185.0 15.4 139 178-320 13-152 (212)
65 3i32_A Heat resistant RNA depe 99.9 1.7E-25 5.9E-30 187.1 15.7 145 171-320 4-149 (300)
66 2yjt_D ATP-dependent RNA helic 99.9 1.3E-27 4.3E-32 185.0 0.0 147 170-320 4-151 (170)
67 2d7d_A Uvrabc system protein B 99.9 6.6E-25 2.2E-29 203.2 17.1 227 73-318 320-568 (661)
68 1c4o_A DNA nucleotide excision 99.9 9.1E-25 3.1E-29 202.3 16.5 136 180-318 421-562 (664)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.8E-25 2.3E-29 210.0 15.8 268 16-304 329-707 (1038)
70 2ipc_A Preprotein translocase 99.9 1.6E-20 5.5E-25 172.5 23.5 283 17-308 120-700 (997)
71 3fe2_A Probable ATP-dependent 99.9 1.9E-21 6.5E-26 159.2 13.0 139 15-161 100-238 (242)
72 1q0u_A Bstdead; DEAD protein, 99.9 1.5E-20 5.1E-25 151.6 15.2 139 14-160 69-211 (219)
73 1wrb_A DJVLGB; RNA helicase, D 99.9 1.1E-20 3.9E-25 155.7 14.8 144 15-162 98-241 (253)
74 1vec_A ATP-dependent RNA helic 99.8 3.5E-20 1.2E-24 148.0 15.6 137 13-157 67-204 (206)
75 3iuy_A Probable ATP-dependent 99.8 2.6E-20 9E-25 151.1 14.4 134 15-157 92-225 (228)
76 3bor_A Human initiation factor 99.8 4.3E-20 1.5E-24 150.6 15.6 137 14-158 95-232 (237)
77 1z5z_A Helicase of the SNF2/RA 99.8 7.8E-21 2.7E-25 157.1 10.6 126 179-306 93-224 (271)
78 1qde_A EIF4A, translation init 99.8 8.9E-20 3E-24 147.6 16.2 139 13-160 78-216 (224)
79 3ber_A Probable ATP-dependent 99.8 3.5E-20 1.2E-24 152.1 13.7 138 13-158 107-245 (249)
80 2oxc_A Probable ATP-dependent 99.8 6.6E-20 2.3E-24 148.9 13.8 137 13-158 88-226 (230)
81 3ly5_A ATP-dependent RNA helic 99.8 6.1E-20 2.1E-24 151.8 12.1 131 16-154 125-256 (262)
82 2gxq_A Heat resistant RNA depe 99.8 9.8E-20 3.4E-24 145.5 12.7 134 15-158 70-203 (207)
83 3fmo_B ATP-dependent RNA helic 99.8 4.5E-19 1.5E-23 149.3 15.7 138 11-159 156-296 (300)
84 2pl3_A Probable ATP-dependent 99.8 2.7E-19 9.1E-24 145.9 13.6 136 15-159 95-231 (236)
85 1t6n_A Probable ATP-dependent 99.8 4.7E-19 1.6E-23 142.9 11.6 135 15-157 80-217 (220)
86 3dkp_A Probable ATP-dependent 99.8 1E-18 3.5E-23 143.3 13.1 140 15-161 96-241 (245)
87 3b6e_A Interferon-induced heli 99.6 1E-14 3.5E-19 116.9 8.6 124 15-139 80-216 (216)
88 2vl7_A XPD; helicase, unknown 99.5 5.1E-14 1.7E-18 127.9 10.8 97 197-301 383-517 (540)
89 1rif_A DAR protein, DNA helica 99.5 1.6E-13 5.6E-18 114.6 10.2 111 17-145 157-267 (282)
90 3crv_A XPD/RAD3 related DNA he 99.4 3.4E-11 1.2E-15 109.7 20.0 86 185-278 379-473 (551)
91 3llm_A ATP-dependent RNA helic 99.3 1.5E-11 5E-16 99.8 10.3 111 17-144 109-222 (235)
92 2fz4_A DNA repair protein RAD2 99.2 4.2E-11 1.4E-15 97.0 9.4 99 17-144 133-232 (237)
93 3hgt_A HDA1 complex subunit 3; 98.5 1.9E-06 6.5E-11 71.5 12.1 123 180-309 107-240 (328)
94 4a15_A XPD helicase, ATP-depen 98.2 9.1E-06 3.1E-10 74.8 11.2 99 197-301 447-580 (620)
95 4a15_A XPD helicase, ATP-depen 96.2 0.0017 5.9E-08 59.7 2.4 37 17-53 51-87 (620)
96 1gm5_A RECG; helicase, replica 96.2 0.012 4.1E-07 55.5 7.8 99 174-274 393-497 (780)
97 3oiy_A Reverse gyrase helicase 95.7 0.03 1E-06 48.7 7.7 98 175-274 41-146 (414)
98 1w36_D RECD, exodeoxyribonucle 95.4 0.052 1.8E-06 49.9 8.6 105 15-139 194-298 (608)
99 2hjv_A ATP-dependent RNA helic 95.1 0.045 1.5E-06 40.8 6.0 80 11-100 29-112 (163)
100 2rb4_A ATP-dependent RNA helic 94.8 0.053 1.8E-06 40.9 5.9 81 7-97 24-108 (175)
101 4ddu_A Reverse gyrase; topoiso 94.8 0.076 2.6E-06 52.3 8.1 100 174-275 97-204 (1104)
102 1fuk_A Eukaryotic initiation f 94.7 0.066 2.2E-06 39.9 6.0 81 10-100 23-107 (165)
103 3eaq_A Heat resistant RNA depe 94.0 0.081 2.8E-06 41.4 5.4 80 8-97 22-105 (212)
104 1t5i_A C_terminal domain of A 93.8 0.078 2.7E-06 39.9 4.9 82 9-100 23-108 (172)
105 2eyq_A TRCF, transcription-rep 93.7 0.18 6.1E-06 50.0 8.2 98 174-273 628-731 (1151)
106 2p6n_A ATP-dependent RNA helic 93.4 0.26 8.8E-06 37.7 7.1 73 17-99 54-130 (191)
107 2jgn_A DBX, DDX3, ATP-dependen 92.9 0.16 5.4E-06 38.7 5.2 74 16-99 45-122 (185)
108 3i32_A Heat resistant RNA depe 91.3 0.23 7.9E-06 41.1 4.8 82 8-99 19-104 (300)
109 2yjt_D ATP-dependent RNA helic 89.8 0.052 1.8E-06 40.8 0.0 82 8-99 21-106 (170)
110 1oyw_A RECQ helicase, ATP-depe 90.1 0.6 2.1E-05 42.0 6.8 59 198-258 65-123 (523)
111 2v1x_A ATP-dependent DNA helic 90.0 0.59 2E-05 42.7 6.7 61 198-258 84-144 (591)
112 1yks_A Genome polyprotein [con 89.5 0.99 3.4E-05 39.5 7.5 69 17-96 177-245 (440)
113 1t6n_A Probable ATP-dependent 88.9 2.5 8.4E-05 32.7 8.8 96 174-274 55-165 (220)
114 2d7d_A Uvrabc system protein B 88.6 2.4 8.1E-05 39.3 9.6 78 16-103 444-525 (661)
115 1c4o_A DNA nucleotide excision 87.9 3.5 0.00012 38.2 10.3 77 16-102 438-518 (664)
116 3pey_A ATP-dependent RNA helic 87.9 1.1 3.8E-05 38.1 6.7 79 13-101 239-321 (395)
117 3fht_A ATP-dependent RNA helic 87.7 0.57 1.9E-05 40.3 4.8 74 15-98 264-341 (412)
118 3i5x_A ATP-dependent RNA helic 87.6 1.1 3.6E-05 40.7 6.7 79 15-100 337-419 (563)
119 1xti_A Probable ATP-dependent 87.6 0.68 2.3E-05 39.5 5.1 79 12-100 245-327 (391)
120 3sqw_A ATP-dependent RNA helic 87.3 1.1 3.9E-05 40.7 6.7 79 15-100 286-368 (579)
121 2db3_A ATP-dependent RNA helic 87.2 1.1 3.8E-05 39.1 6.3 69 19-97 302-374 (434)
122 2i4i_A ATP-dependent RNA helic 86.7 1.4 4.9E-05 37.9 6.8 72 16-97 275-350 (417)
123 2gxq_A Heat resistant RNA depe 86.6 4.6 0.00016 30.7 9.0 94 174-273 42-150 (207)
124 1s2m_A Putative ATP-dependent 86.5 0.84 2.9E-05 39.1 5.1 77 13-99 254-334 (400)
125 2wv9_A Flavivirin protease NS2 85.9 2.2 7.5E-05 39.6 7.8 70 16-96 409-478 (673)
126 3bor_A Human initiation factor 85.8 3.3 0.00011 32.5 7.9 96 173-273 70-179 (237)
127 3gk5_A Uncharacterized rhodane 85.8 1.3 4.5E-05 30.0 4.9 38 196-233 53-90 (108)
128 1hv8_A Putative ATP-dependent 85.2 1.3 4.4E-05 37.3 5.6 75 15-99 236-314 (367)
129 3ber_A Probable ATP-dependent 85.2 2.8 9.7E-05 33.3 7.3 70 198-273 111-192 (249)
130 3vkw_A Replicase large subunit 84.0 3 0.0001 36.3 7.3 62 18-103 185-246 (446)
131 2j0s_A ATP-dependent RNA helic 84.0 0.95 3.3E-05 38.9 4.3 74 16-99 275-352 (410)
132 3iuy_A Probable ATP-dependent 83.6 4.8 0.00016 31.2 7.9 71 197-273 93-173 (228)
133 3eme_A Rhodanese-like domain p 83.5 1.2 4E-05 29.9 3.8 38 196-233 54-91 (103)
134 2oxc_A Probable ATP-dependent 83.4 4.2 0.00014 31.7 7.5 93 174-273 65-172 (230)
135 3foj_A Uncharacterized protein 83.3 1.2 4E-05 29.8 3.6 38 196-233 54-91 (100)
136 1wp9_A ATP-dependent RNA helic 83.0 1.8 6.1E-05 37.9 5.8 77 15-101 359-447 (494)
137 2jlq_A Serine protease subunit 82.7 3.6 0.00012 36.0 7.5 69 17-96 188-256 (451)
138 3iwh_A Rhodanese-like domain p 82.6 1.4 4.7E-05 29.7 3.8 38 196-233 54-91 (103)
139 1gku_B Reverse gyrase, TOP-RG; 82.6 1.8 6.2E-05 42.5 6.0 92 178-273 79-181 (1054)
140 3fe2_A Probable ATP-dependent 82.5 3.1 0.00011 32.8 6.4 72 197-274 101-183 (242)
141 2pl3_A Probable ATP-dependent 82.4 3.6 0.00012 32.2 6.8 70 197-273 96-177 (236)
142 2v6i_A RNA helicase; membrane, 81.4 1.6 5.5E-05 38.1 4.7 68 17-95 171-238 (431)
143 2xau_A PRE-mRNA-splicing facto 81.0 2.6 8.9E-05 39.8 6.2 77 15-97 301-393 (773)
144 1vec_A ATP-dependent RNA helic 80.8 6.2 0.00021 29.9 7.5 94 174-273 44-152 (206)
145 2gk6_A Regulator of nonsense t 80.3 3.7 0.00013 37.7 6.9 109 7-137 214-371 (624)
146 1wv9_A Rhodanese homolog TT165 79.8 1.7 5.7E-05 28.6 3.4 37 196-233 52-88 (94)
147 2z83_A Helicase/nucleoside tri 79.8 5.1 0.00018 35.2 7.4 69 17-96 190-258 (459)
148 2l82_A Designed protein OR32; 79.6 5.6 0.00019 26.6 5.7 18 239-258 70-87 (162)
149 3g5j_A Putative ATP/GTP bindin 78.9 1.7 5.7E-05 30.6 3.4 37 197-233 87-125 (134)
150 3flh_A Uncharacterized protein 78.8 1.8 6.2E-05 30.2 3.5 38 196-233 69-108 (124)
151 1qde_A EIF4A, translation init 78.6 6.3 0.00022 30.4 7.0 94 173-273 54-161 (224)
152 3hix_A ALR3790 protein; rhodan 78.0 1.6 5.6E-05 29.4 2.9 38 196-233 50-88 (106)
153 1wrb_A DJVLGB; RNA helicase, D 77.8 6.9 0.00024 30.9 7.1 70 198-273 100-180 (253)
154 4gl2_A Interferon-induced heli 77.7 0.62 2.1E-05 43.5 0.9 75 17-97 400-488 (699)
155 2wjy_A Regulator of nonsense t 77.7 4.6 0.00016 38.3 6.8 27 14-40 397-423 (800)
156 2ykg_A Probable ATP-dependent 77.5 2.4 8.2E-05 39.4 4.8 80 15-100 396-488 (696)
157 3eiq_A Eukaryotic initiation f 77.4 0.88 3E-05 39.1 1.8 80 9-98 272-355 (414)
158 1gmx_A GLPE protein; transfera 77.4 2.6 8.8E-05 28.5 3.8 38 196-233 56-94 (108)
159 3tbk_A RIG-I helicase domain; 77.3 3.3 0.00011 37.1 5.6 70 198-273 52-133 (555)
160 4b3f_X DNA-binding protein smu 77.0 1.4 4.9E-05 40.7 3.1 25 17-41 233-257 (646)
161 3fho_A ATP-dependent RNA helic 76.8 1.2 4.1E-05 39.8 2.4 80 10-99 350-433 (508)
162 3upu_A ATP-dependent DNA helic 76.7 4.7 0.00016 35.4 6.3 16 88-103 125-140 (459)
163 4a2p_A RIG-I, retinoic acid in 76.7 3.6 0.00012 36.9 5.6 70 198-273 55-136 (556)
164 1tq1_A AT5G66040, senescence-a 76.6 2.8 9.5E-05 29.4 3.9 38 196-233 80-118 (129)
165 3dkp_A Probable ATP-dependent 76.1 3.2 0.00011 32.7 4.6 73 197-274 97-182 (245)
166 3ly5_A ATP-dependent RNA helic 76.1 8.6 0.0003 30.7 7.2 71 197-273 125-207 (262)
167 2z0m_A 337AA long hypothetical 76.0 3 0.0001 34.4 4.7 76 11-100 214-293 (337)
168 2fsx_A RV0390, COG0607: rhodan 75.8 3.7 0.00013 29.6 4.5 38 196-233 78-116 (148)
169 3nhv_A BH2092 protein; alpha-b 75.8 2.7 9.3E-05 30.2 3.8 38 196-233 70-109 (144)
170 2fz4_A DNA repair protein RAD2 75.7 12 0.00041 29.3 7.9 67 174-258 112-179 (237)
171 4a2q_A RIG-I, retinoic acid in 75.6 4.1 0.00014 38.7 5.9 70 198-273 296-377 (797)
172 2o0j_A Terminase, DNA packagin 75.1 9 0.00031 32.8 7.3 29 15-43 206-234 (385)
173 1q0u_A Bstdead; DEAD protein, 75.0 3.8 0.00013 31.6 4.7 94 174-273 45-156 (219)
174 1qxn_A SUD, sulfide dehydrogen 74.9 3.1 0.00011 29.6 3.8 38 196-233 80-118 (137)
175 2fwr_A DNA repair protein RAD2 74.1 7.6 0.00026 34.0 7.0 57 174-233 112-169 (472)
176 3fmo_B ATP-dependent RNA helic 73.9 8.1 0.00028 31.6 6.7 93 173-274 134-242 (300)
177 4a2w_A RIG-I, retinoic acid in 73.8 6.1 0.00021 38.3 6.7 94 174-273 267-377 (936)
178 3ilm_A ALR3790 protein; rhodan 73.2 3.6 0.00012 29.4 3.8 39 195-233 53-92 (141)
179 1tvm_A PTS system, galactitol- 73.2 8.3 0.00028 26.4 5.5 59 14-76 18-78 (113)
180 1vee_A Proline-rich protein fa 73.1 5.5 0.00019 28.1 4.8 38 196-233 72-110 (134)
181 2xzl_A ATP-dependent helicase 72.9 13 0.00043 35.4 8.4 98 17-137 404-549 (802)
182 2k0z_A Uncharacterized protein 71.8 4.9 0.00017 27.2 4.1 38 196-233 54-91 (110)
183 2whx_A Serine protease/ntpase/ 71.4 8.4 0.00029 35.3 6.7 69 17-96 355-423 (618)
184 2jtq_A Phage shock protein E; 71.0 5.6 0.00019 25.3 4.1 37 196-233 39-76 (85)
185 3e1s_A Exodeoxyribonuclease V, 69.0 14 0.0005 33.4 7.6 28 89-120 277-304 (574)
186 2hhg_A Hypothetical protein RP 68.7 3.2 0.00011 29.4 2.7 38 196-233 84-122 (139)
187 3d1p_A Putative thiosulfate su 68.4 4.3 0.00015 28.8 3.3 38 196-233 89-127 (139)
188 2r2a_A Uncharacterized protein 67.1 4.5 0.00015 31.0 3.4 45 92-140 88-133 (199)
189 1fuu_A Yeast initiation factor 66.6 23 0.00077 29.8 8.2 93 174-273 62-168 (394)
190 3dmn_A Putative DNA helicase; 66.2 35 0.0012 25.1 8.2 81 181-277 44-124 (174)
191 3l9o_A ATP-dependent RNA helic 65.4 12 0.00042 36.9 6.8 72 174-258 203-274 (1108)
192 3o8b_A HCV NS3 protease/helica 65.1 11 0.00038 34.8 6.1 67 16-96 395-461 (666)
193 2fsf_A Preprotein translocase 64.9 17 0.00059 34.5 7.3 75 175-258 92-171 (853)
194 3lfu_A DNA helicase II; SF1 he 64.8 68 0.0023 29.2 11.5 31 198-228 347-377 (647)
195 3rc3_A ATP-dependent RNA helic 64.3 8.8 0.0003 35.6 5.3 72 20-102 323-400 (677)
196 3dmq_A RNA polymerase-associat 63.4 6.1 0.00021 38.4 4.2 84 9-101 495-584 (968)
197 2oca_A DAR protein, ATP-depend 63.4 14 0.00047 32.7 6.4 91 174-273 132-231 (510)
198 2va8_A SSO2462, SKI2-type heli 60.9 16 0.00055 34.0 6.5 77 16-98 251-363 (715)
199 2lnd_A De novo designed protei 60.0 26 0.00087 21.9 5.1 57 186-242 39-97 (112)
200 3fmp_B ATP-dependent RNA helic 59.8 39 0.0013 29.5 8.6 93 172-273 133-241 (479)
201 3cpe_A Terminase, DNA packagin 59.5 28 0.00094 31.7 7.7 77 15-104 206-286 (592)
202 1tf5_A Preprotein translocase 58.5 30 0.001 32.9 7.6 74 176-258 102-180 (844)
203 2orv_A Thymidine kinase; TP4A 57.0 68 0.0023 25.1 8.6 26 90-121 89-114 (234)
204 2zj8_A DNA helicase, putative 56.5 10 0.00035 35.4 4.4 78 172-258 41-122 (720)
205 1urh_A 3-mercaptopyruvate sulf 56.4 14 0.00047 29.8 4.7 37 196-232 84-122 (280)
206 1urh_A 3-mercaptopyruvate sulf 56.1 15 0.00053 29.5 4.9 38 196-233 228-266 (280)
207 3b6e_A Interferon-induced heli 55.5 10 0.00036 28.7 3.7 79 174-258 52-140 (216)
208 3tg1_B Dual specificity protei 54.9 10 0.00034 27.6 3.3 36 198-233 93-137 (158)
209 2ipc_A Preprotein translocase 54.4 35 0.0012 32.8 7.4 76 175-259 97-177 (997)
210 3czc_A RMPB; alpha/beta sandwi 54.0 8.7 0.0003 26.1 2.6 59 15-76 16-76 (110)
211 3hjh_A Transcription-repair-co 53.8 18 0.00063 31.9 5.3 64 198-275 382-446 (483)
212 1g5t_A COB(I)alamin adenosyltr 53.5 20 0.0007 27.2 4.8 52 90-147 119-170 (196)
213 2xgj_A ATP-dependent RNA helic 52.4 17 0.00058 35.5 5.2 72 174-258 105-176 (1010)
214 3bos_A Putative DNA replicatio 51.6 20 0.00069 27.6 4.9 60 46-105 52-118 (242)
215 3g85_A Transcriptional regulat 51.5 88 0.003 24.7 13.2 38 184-224 176-213 (289)
216 4a4z_A Antiviral helicase SKI2 50.1 32 0.0011 33.6 6.7 50 196-258 80-131 (997)
217 1nkt_A Preprotein translocase 49.7 43 0.0015 32.0 7.2 54 197-258 151-208 (922)
218 2p6r_A Afuhel308 helicase; pro 49.4 20 0.00069 33.3 5.1 93 172-273 42-144 (702)
219 2eg4_A Probable thiosulfate su 49.2 14 0.00049 28.7 3.6 38 196-233 182-219 (230)
220 1rif_A DAR protein, DNA helica 48.1 23 0.00077 28.5 4.7 89 176-273 134-231 (282)
221 3i2v_A Adenylyltransferase and 47.5 12 0.0004 25.8 2.5 36 198-233 72-114 (127)
222 3hzu_A Thiosulfate sulfurtrans 46.5 21 0.00073 29.4 4.4 37 196-232 109-147 (318)
223 1uar_A Rhodanese; sulfurtransf 46.4 23 0.00079 28.5 4.5 38 196-233 231-270 (285)
224 2j48_A Two-component sensor ki 46.2 42 0.0014 21.7 5.3 104 177-290 7-115 (119)
225 1e0c_A Rhodanese, sulfurtransf 45.8 20 0.00069 28.6 4.0 37 196-232 79-117 (271)
226 3k4h_A Putative transcriptiona 45.3 1.1E+02 0.0038 24.1 13.2 39 183-224 179-217 (292)
227 3lwd_A 6-phosphogluconolactona 45.3 42 0.0014 26.1 5.6 28 74-101 44-71 (226)
228 2orw_A Thymidine kinase; TMTK, 44.8 19 0.00065 26.9 3.5 14 90-103 75-88 (184)
229 3hs3_A Ribose operon repressor 44.2 1.1E+02 0.0039 23.9 11.2 188 10-224 3-203 (277)
230 3zyw_A Glutaredoxin-3; metal b 44.1 70 0.0024 21.4 6.0 45 198-242 15-65 (111)
231 1qtn_A Caspase-8; apoptosis, d 43.3 89 0.003 22.8 6.8 38 208-246 54-91 (164)
232 4ag6_A VIRB4 ATPase, type IV s 43.1 25 0.00085 29.9 4.4 31 91-121 262-295 (392)
233 2kjq_A DNAA-related protein; s 43.0 10 0.00035 27.3 1.7 31 89-120 81-111 (149)
234 1e0c_A Rhodanese, sulfurtransf 42.9 20 0.00068 28.6 3.6 38 196-233 221-259 (271)
235 3gyb_A Transcriptional regulat 42.8 1.2E+02 0.0041 23.7 9.4 185 15-223 3-200 (280)
236 2q5c_A NTRC family transcripti 42.6 26 0.0009 26.5 4.0 59 17-80 4-64 (196)
237 3h11_A CAsp8 and FADD-like apo 41.8 25 0.00085 28.4 3.9 49 197-246 42-90 (272)
238 4b3f_X DNA-binding protein smu 40.2 33 0.0011 31.5 5.0 55 173-227 208-262 (646)
239 3lhi_A Putative 6-phosphogluco 39.9 41 0.0014 26.3 4.8 28 74-101 45-72 (232)
240 3e2i_A Thymidine kinase; Zn-bi 39.9 1.3E+02 0.0044 23.3 8.0 27 70-102 86-112 (219)
241 1rhs_A Sulfur-substituted rhod 39.8 31 0.0011 28.0 4.3 38 196-233 238-276 (296)
242 4f67_A UPF0176 protein LPG2838 39.3 18 0.0006 29.1 2.6 38 196-233 179-217 (265)
243 1uar_A Rhodanese; sulfurtransf 38.8 22 0.00075 28.6 3.2 37 196-232 77-115 (285)
244 3h1t_A Type I site-specific re 38.6 39 0.0013 30.5 5.2 80 15-101 437-527 (590)
245 1vkr_A Mannitol-specific PTS s 38.0 45 0.0015 23.1 4.3 56 17-78 13-70 (125)
246 3olh_A MST, 3-mercaptopyruvate 38.0 26 0.00088 28.6 3.5 39 195-233 251-290 (302)
247 2l2q_A PTS system, cellobiose- 37.9 21 0.0007 24.1 2.5 52 18-76 5-60 (109)
248 3a10_A Response regulator; pho 37.7 53 0.0018 21.4 4.7 74 178-258 8-81 (116)
249 2dko_A Caspase-3; low barrier 37.6 85 0.0029 22.4 5.8 37 209-246 41-77 (146)
250 4fn4_A Short chain dehydrogena 37.5 81 0.0028 25.0 6.3 62 197-258 30-92 (254)
251 2gno_A DNA polymerase III, gam 37.5 36 0.0012 27.9 4.3 28 89-120 80-107 (305)
252 2b8t_A Thymidine kinase; deoxy 37.3 1.4E+02 0.0048 23.0 11.9 84 15-103 10-101 (223)
253 3nwp_A 6-phosphogluconolactona 36.9 45 0.0015 26.0 4.6 28 74-101 48-75 (233)
254 2h54_A Caspase-1; allosteric s 36.8 93 0.0032 23.1 6.1 47 199-246 44-101 (178)
255 3hzu_A Thiosulfate sulfurtrans 36.0 32 0.0011 28.3 3.8 47 186-233 248-296 (318)
256 2ouc_A Dual specificity protei 35.2 29 0.00099 24.2 3.1 36 198-233 83-127 (142)
257 2p65_A Hypothetical protein PF 34.6 25 0.00086 25.6 2.8 14 91-104 115-128 (187)
258 3aay_A Putative thiosulfate su 34.3 37 0.0013 27.1 3.9 38 196-233 75-114 (277)
259 3h7a_A Short chain dehydrogena 34.3 86 0.0029 24.5 6.0 61 197-258 30-91 (252)
260 3lyl_A 3-oxoacyl-(acyl-carrier 34.2 1E+02 0.0034 23.8 6.4 62 197-258 28-90 (247)
261 3aay_A Putative thiosulfate su 34.0 31 0.0011 27.5 3.4 38 196-233 224-263 (277)
262 1l8q_A Chromosomal replication 34.0 35 0.0012 28.0 3.8 15 91-105 98-112 (324)
263 3h11_B Caspase-8; cell death, 33.6 71 0.0024 25.6 5.4 38 208-246 48-85 (271)
264 3hjh_A Transcription-repair-co 33.3 55 0.0019 28.9 5.0 27 17-43 39-65 (483)
265 1nw9_B Caspase 9, apoptosis-re 33.0 1.4E+02 0.0048 23.9 7.1 48 198-246 21-82 (277)
266 1a5t_A Delta prime, HOLB; zinc 32.6 46 0.0016 27.5 4.3 43 89-140 106-148 (334)
267 1rhs_A Sulfur-substituted rhod 32.5 53 0.0018 26.5 4.6 38 196-233 90-131 (296)
268 2chg_A Replication factor C sm 32.4 1.5E+02 0.0051 21.8 10.0 16 90-105 101-116 (226)
269 2wci_A Glutaredoxin-4; redox-a 32.3 1.3E+02 0.0044 21.0 6.4 47 199-245 35-87 (135)
270 1m72_A Caspase-1; caspase, cys 32.1 1.1E+02 0.0037 24.6 6.2 47 199-246 33-92 (272)
271 1d2n_A N-ethylmaleimide-sensit 32.1 79 0.0027 25.0 5.5 15 90-104 123-137 (272)
272 3te6_A Regulatory protein SIR3 32.1 2.1E+02 0.0072 23.5 9.3 125 8-141 36-174 (318)
273 4es6_A Uroporphyrinogen-III sy 31.9 69 0.0024 25.1 5.1 72 184-258 116-193 (254)
274 3tb6_A Arabinose metabolism tr 31.8 1.9E+02 0.0063 22.7 11.8 38 184-224 187-226 (298)
275 3e4c_A Caspase-1; zymogen, inf 31.8 89 0.0031 25.5 5.7 47 199-246 61-118 (302)
276 2qv0_A Protein MRKE; structura 31.7 1.2E+02 0.0041 20.5 6.1 107 177-290 15-124 (143)
277 3r1i_A Short-chain type dehydr 31.3 91 0.0031 24.8 5.8 62 197-258 55-117 (276)
278 3u61_B DNA polymerase accessor 31.3 24 0.00083 28.9 2.4 16 89-104 103-118 (324)
279 4g81_D Putative hexonate dehyd 31.1 1.5E+02 0.0052 23.4 6.9 62 197-258 32-94 (255)
280 2j9r_A Thymidine kinase; TK1, 31.0 43 0.0015 25.8 3.5 13 91-103 101-113 (214)
281 1t3k_A Arath CDC25, dual-speci 30.9 67 0.0023 22.9 4.4 38 196-233 83-130 (152)
282 1wik_A Thioredoxin-like protei 30.8 1.1E+02 0.0039 20.0 7.9 47 199-245 15-67 (109)
283 3sxu_A DNA polymerase III subu 30.7 33 0.0011 24.7 2.7 82 183-277 24-105 (150)
284 1pyo_A Caspase-2; apoptosis, c 30.7 1.1E+02 0.0037 22.4 5.6 48 198-246 33-94 (167)
285 3l6u_A ABC-type sugar transpor 30.3 2E+02 0.0067 22.5 12.4 38 183-223 182-219 (293)
286 3ntd_A FAD-dependent pyridine 30.2 38 0.0013 30.3 3.6 38 196-233 522-559 (565)
287 3ipz_A Monothiol glutaredoxin- 30.1 1.2E+02 0.0041 20.0 7.6 46 198-243 17-68 (109)
288 1w4r_A Thymidine kinase; type 29.8 52 0.0018 24.9 3.7 27 70-103 77-103 (195)
289 2eg4_A Probable thiosulfate su 29.7 71 0.0024 24.6 4.7 33 198-231 61-95 (230)
290 3ucx_A Short chain dehydrogena 29.6 1.1E+02 0.0039 23.9 6.1 62 197-258 34-96 (264)
291 2wlr_A Putative thiosulfate su 29.4 50 0.0017 28.4 4.1 38 196-233 201-239 (423)
292 1xx6_A Thymidine kinase; NESG, 29.3 52 0.0018 24.8 3.7 28 70-103 66-93 (191)
293 3huu_A Transcription regulator 29.3 2.1E+02 0.0073 22.6 11.8 28 197-224 200-227 (305)
294 3g1w_A Sugar ABC transporter; 29.2 2.1E+02 0.0072 22.6 11.9 37 184-223 175-211 (305)
295 1sxj_E Activator 1 40 kDa subu 29.0 24 0.00081 29.3 1.9 15 89-103 132-146 (354)
296 2j32_A Caspase-3; Pro-caspase3 27.9 1.7E+02 0.0058 23.0 6.6 36 210-246 42-77 (250)
297 3tx2_A Probable 6-phosphogluco 27.3 74 0.0025 25.1 4.4 28 74-101 50-79 (251)
298 3s99_A Basic membrane lipoprot 27.2 76 0.0026 26.6 4.7 85 15-99 24-118 (356)
299 1jbk_A CLPB protein; beta barr 26.9 77 0.0026 22.8 4.4 14 91-104 115-128 (195)
300 2yan_A Glutaredoxin-3; oxidore 26.5 1.3E+02 0.0046 19.4 7.2 48 199-246 17-70 (105)
301 3rkr_A Short chain oxidoreduct 26.5 1.1E+02 0.0038 23.9 5.5 63 197-259 52-115 (262)
302 1iqp_A RFCS; clamp loader, ext 26.3 97 0.0033 25.0 5.2 15 90-104 109-123 (327)
303 2fp3_A Caspase NC; apoptosis, 26.3 1.2E+02 0.0042 24.9 5.7 48 198-246 61-120 (316)
304 3sir_A Caspase; hydrolase; 2.6 26.0 1.7E+02 0.0057 23.2 6.3 38 208-246 43-80 (259)
305 3ics_A Coenzyme A-disulfide re 25.9 47 0.0016 30.0 3.5 38 196-233 539-576 (588)
306 2wem_A Glutaredoxin-related pr 25.8 1.6E+02 0.0054 19.9 6.4 44 199-242 20-70 (118)
307 3imf_A Short chain dehydrogena 25.8 92 0.0031 24.3 4.8 62 197-258 29-91 (257)
308 1okg_A Possible 3-mercaptopyru 25.7 69 0.0023 27.1 4.2 38 196-233 93-132 (373)
309 3h5o_A Transcriptional regulat 25.5 2.7E+02 0.0091 22.5 9.0 37 185-224 228-264 (339)
310 2l82_A Designed protein OR32; 25.5 1.5E+02 0.0052 19.7 8.0 67 177-246 58-127 (162)
311 2z4s_A Chromosomal replication 25.4 62 0.0021 28.0 4.0 60 46-105 130-208 (440)
312 1yt8_A Thiosulfate sulfurtrans 25.3 70 0.0024 28.6 4.4 37 197-233 321-358 (539)
313 3sqn_A Conserved domain protei 24.8 1.5E+02 0.0052 26.0 6.4 57 14-75 395-452 (485)
314 3p45_A Caspase-6; protease, hu 24.6 2.2E+02 0.0074 21.2 6.3 48 198-246 44-105 (179)
315 3oc6_A 6-phosphogluconolactona 24.6 60 0.0021 25.6 3.4 28 74-101 50-79 (248)
316 2wlr_A Putative thiosulfate su 24.6 83 0.0028 27.0 4.6 38 196-233 356-394 (423)
317 3dbi_A Sugar-binding transcrip 24.5 2.8E+02 0.0095 22.4 12.4 37 185-224 231-267 (338)
318 3kke_A LACI family transcripti 24.4 2.6E+02 0.009 22.1 13.7 28 197-224 195-222 (303)
319 3i42_A Response regulator rece 24.3 41 0.0014 22.5 2.2 109 177-294 9-123 (127)
320 3qiv_A Short-chain dehydrogena 24.3 1.3E+02 0.0044 23.2 5.5 62 197-258 32-94 (253)
321 1uaa_A REP helicase, protein ( 24.3 4.1E+02 0.014 24.3 10.6 32 197-228 341-372 (673)
322 2nn3_C Caspase-1; cysteine pro 24.3 1.4E+02 0.0047 24.5 5.6 47 199-246 61-120 (310)
323 2ql9_A Caspase-7; cysteine pro 24.3 1.4E+02 0.0047 22.1 5.1 37 209-246 69-105 (173)
324 1sxj_D Activator 1 41 kDa subu 24.0 64 0.0022 26.5 3.7 16 90-105 132-147 (353)
325 4ibo_A Gluconate dehydrogenase 23.9 1.2E+02 0.0043 23.9 5.3 62 197-258 49-111 (271)
326 1y89_A DEVB protein; structura 23.8 1.4E+02 0.0047 23.2 5.4 62 22-101 5-71 (238)
327 1okg_A Possible 3-mercaptopyru 23.6 58 0.002 27.5 3.3 36 198-233 246-282 (373)
328 1e2b_A Enzyme IIB-cellobiose; 23.4 70 0.0024 21.3 3.1 52 19-77 5-60 (106)
329 1z5z_A Helicase of the SNF2/RA 23.2 1.4E+02 0.0046 23.8 5.4 76 16-100 111-192 (271)
330 1pjr_A PCRA; DNA repair, DNA r 23.2 4.5E+02 0.015 24.3 12.0 38 198-236 351-388 (724)
331 2v1u_A Cell division control p 23.0 68 0.0023 26.7 3.7 15 92-106 131-145 (387)
332 1u6t_A SH3 domain-binding glut 22.9 1.4E+02 0.0047 20.6 4.5 37 209-245 17-53 (121)
333 3ico_A 6PGL, 6-phosphogluconol 22.8 84 0.0029 25.1 4.0 28 74-101 66-95 (268)
334 3olh_A MST, 3-mercaptopyruvate 22.8 1E+02 0.0034 25.1 4.6 38 196-233 105-146 (302)
335 3od5_A Caspase-6; caspase doma 22.8 1.7E+02 0.006 23.4 5.9 47 199-246 22-82 (278)
336 3tfo_A Putative 3-oxoacyl-(acy 22.8 1.5E+02 0.005 23.4 5.5 62 197-258 27-89 (264)
337 3euj_A Chromosome partition pr 22.7 53 0.0018 29.0 3.0 38 90-138 413-450 (483)
338 2qby_A CDC6 homolog 1, cell di 22.7 75 0.0026 26.3 4.0 28 92-119 129-156 (386)
339 2lpm_A Two-component response 22.6 86 0.0029 21.5 3.5 80 211-292 42-121 (123)
340 3sju_A Keto reductase; short-c 22.3 1.4E+02 0.0046 23.7 5.2 62 197-258 47-109 (279)
341 1vp8_A Hypothetical protein AF 22.2 96 0.0033 23.4 3.8 60 199-260 45-108 (201)
342 3kto_A Response regulator rece 22.2 1.2E+02 0.004 20.4 4.4 105 177-290 12-123 (136)
343 3gaf_A 7-alpha-hydroxysteroid 22.0 1.1E+02 0.0039 23.8 4.7 62 197-258 35-97 (256)
344 1jr5_A 10 kDa anti-sigma facto 21.8 37 0.0013 21.8 1.3 20 230-251 59-78 (90)
345 3h4m_A Proteasome-activating n 21.7 66 0.0023 25.5 3.3 14 92-105 111-124 (285)
346 3eie_A Vacuolar protein sortin 21.6 1.4E+02 0.0049 24.3 5.3 15 91-105 110-124 (322)
347 3gv0_A Transcriptional regulat 21.5 2.9E+02 0.01 21.5 13.5 45 12-56 3-51 (288)
348 3nbm_A PTS system, lactose-spe 21.4 1.5E+02 0.0051 19.8 4.4 82 17-102 6-89 (108)
349 1vl1_A 6PGL, 6-phosphogluconol 21.3 1.3E+02 0.0046 23.3 4.8 28 74-101 56-83 (232)
350 3sr3_A Microcin immunity prote 21.3 2.1E+02 0.0073 23.7 6.3 61 195-258 10-87 (336)
351 3tla_A MCCF; serine protease, 21.3 2.1E+02 0.007 24.2 6.2 61 195-258 40-117 (371)
352 1z3i_X Similar to RAD54-like; 21.1 96 0.0033 28.4 4.5 77 15-101 414-497 (644)
353 3cnb_A DNA-binding response re 21.1 81 0.0028 21.4 3.3 109 177-292 14-129 (143)
354 3eul_A Possible nitrate/nitrit 21.1 1.7E+02 0.0059 20.0 5.2 112 174-292 18-134 (152)
355 2qby_B CDC6 homolog 3, cell di 21.0 68 0.0023 26.7 3.3 13 94-106 136-148 (384)
356 3l49_A ABC sugar (ribose) tran 21.0 3E+02 0.01 21.4 10.9 40 184-223 176-215 (291)
357 1sxj_C Activator 1 40 kDa subu 20.9 1.3E+02 0.0046 24.6 5.1 17 89-105 108-124 (340)
358 1yt8_A Thiosulfate sulfurtrans 20.9 70 0.0024 28.6 3.5 36 197-232 62-98 (539)
359 3eb9_A 6-phosphogluconolactona 20.6 1.3E+02 0.0044 24.0 4.7 67 17-101 4-78 (266)
360 3v8b_A Putative dehydrogenase, 20.6 1.5E+02 0.0051 23.6 5.2 62 197-258 51-113 (283)
361 3egc_A Putative ribose operon 20.3 3.1E+02 0.011 21.3 11.3 37 185-224 175-211 (291)
362 3syl_A Protein CBBX; photosynt 20.2 1.1E+02 0.0039 24.4 4.4 13 93-105 132-144 (309)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-47 Score=340.58 Aligned_cols=296 Identities=30% Similarity=0.557 Sum_probs=258.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..++++|||+||++|+.|+.++++++....++++..++|+.....+...+..+++|+|+||+++.+++.+....++++++
T Consensus 127 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~ 206 (434)
T 2db3_A 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF 206 (434)
T ss_dssp TTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCE
T ss_pred cCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCe
Confidence 34789999999999999999999999988888999999998877776667778999999999999999988888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||||++.+.+|.+.+..++..+... .+.|++++|||+++........++..+..+...........+.+.+
T Consensus 207 lVlDEah~~~~~gf~~~~~~i~~~~~~~------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 207 VVLDEADRMLDMGFSEDMRRIMTHVTMR------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHCTTSC------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred EEEccHhhhhccCcHHHHHHHHHhcCCC------CCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999998775321 2449999999999999888888887776665554444444555555
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
..+. ...|...+.+.+... +.++||||++++.++.+++.|++.+..+..+||+++..+|..++++|++ |+.+||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vL 354 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN--GSMKVL 354 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT--SSCSEE
T ss_pred EEeC-cHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc--CCCcEE
Confidence 5544 566888888888764 3459999999999999999999999999999999999999999999999 999999
Q ss_pred EEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeC-CcHHHHHHHHHHHHhcC
Q 047490 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLADRIEEAIRKNE 322 (323)
Q Consensus 255 v~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~i~~~l~~~~ 322 (323)
|||+++++|+|+ ++++||+||+|.+..+|.||+||+||.|+.|.+++++++ .+...++.+.+.++...
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~ 424 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSG 424 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTT
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999999999999999999994 57788899999887654
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.1e-46 Score=330.07 Aligned_cols=296 Identities=27% Similarity=0.458 Sum_probs=258.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+++++||++||++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+++...+.+....+.+++
T Consensus 102 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 102 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181 (410)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhee
Confidence 35678999999999999999999999998888999999998776666555656689999999999999988878889999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
++|+||+|++.+.++...+..++..+.. +.+++++|||+++........++..+..+...........+.+.
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPP--------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF 253 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCT--------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEE
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCcc--------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEE
Confidence 9999999999998888888888776643 33999999999988877777766666655544444455566677
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
+........|...+.+++... ..+++||||++.+.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.+|
T Consensus 254 ~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~v 329 (410)
T 2j0s_A 254 FVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS--GASRV 329 (410)
T ss_dssp EEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH--TSSCE
T ss_pred EEEeCcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC--CCCCE
Confidence 777776677888888888764 45699999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
||||+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.++++++..|...++.+++.++..
T Consensus 330 lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 398 (410)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999887653
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=327.59 Aligned_cols=299 Identities=31% Similarity=0.531 Sum_probs=253.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||++|.+.+......++++++|
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~i 179 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 179 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEE
Confidence 35789999999999999999999998888889999999977766666667778999999999999998887788999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.++++...+..++...... .....+++++|||+++.........+..+..............+.+.+.
T Consensus 180 ViDEah~~~~~~~~~~~~~i~~~~~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 255 (417)
T 2i4i_A 180 VLDEADRMLDMGFEPQIRRIVEQDTMP----PKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 255 (417)
T ss_dssp EESSHHHHHHTTCHHHHHHHHTSSSCC----CBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEE
T ss_pred EEEChhHhhccCcHHHHHHHHHhccCC----CcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEE
Confidence 999999999988988888887643211 1124589999999999888888887776655554443344445555555
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
... ...+...+.+++... ..++++||||++.+.++.+++.|++.+..+..+||+++..+|.+++++|++ |+.+|||
T Consensus 256 ~~~-~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv 331 (417)
T 2i4i_A 256 WVE-ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILV 331 (417)
T ss_dssp ECC-GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TSSCEEE
T ss_pred Eec-cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc--CCCCEEE
Confidence 444 466888888888764 456799999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
||+++++|+|+ ++++||++++|.|...|.||+||+||.|+.|.+++++++.|...++.+.+.++...
T Consensus 332 aT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 332 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp ECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred ECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999 99999999999999999999999999999999999999999999999999887643
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-45 Score=325.00 Aligned_cols=296 Identities=29% Similarity=0.458 Sum_probs=246.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
..++.++||++|+++|+.|+.+.+++++...+..+....|+.........+. .+++|+|+||+++.+.+......+.++
T Consensus 105 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 3467899999999999999999999998888889998888876655544443 668999999999999998887788899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
++||+||+|++.++++...+..++..+.. +.+++++|||+++.........+..+..+...........+.+
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLNS--------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQ 256 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSCT--------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCE
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCCC--------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceE
Confidence 99999999999998888888888877654 3499999999999888888887777766655555556666777
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+........+...+.+++... .++++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.+
T Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~ 332 (414)
T 3eiq_A 257 FYINVEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS--GSSR 332 (414)
T ss_dssp EEEECSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC--C---
T ss_pred EEEEeChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc--CCCc
Confidence 7777777777899998888765 56799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|||||+++++|+|+ ++++||+++.|.|...|.||+||+||.|+.|.|+++++..|...++.+++.++..
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999887653
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.4e-44 Score=315.44 Aligned_cols=292 Identities=28% Similarity=0.472 Sum_probs=247.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++|+++|+.|+.+.++++....++++...+|+............+++|+|+||+++.+.+.+....++++++
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~ 166 (400)
T 1s2m_A 87 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166 (400)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCE
Confidence 45679999999999999999999999988888999998887765555555667899999999999998887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||+|++.+.++...+..++..+.. ..+++++|||++......+...+..+....... ........+.+
T Consensus 167 vIiDEaH~~~~~~~~~~~~~i~~~~~~--------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 237 (400)
T 1s2m_A 167 FIMDEADKMLSRDFKTIIEQILSFLPP--------THQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYY 237 (400)
T ss_dssp EEEESHHHHSSHHHHHHHHHHHTTSCS--------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEE
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCc--------CceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEE
Confidence 999999999876666666666655543 349999999999988888887776655443322 12233333443
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
. ......|...+..++... .++++||||++.+.++.+++.|+..+..+..+||+++..+|..+++.|++ |+.+||
T Consensus 238 ~-~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vL 312 (400)
T 1s2m_A 238 A-FVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ--GKVRTL 312 (400)
T ss_dssp E-ECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT--TSSSEE
T ss_pred E-EechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc--CCCcEE
Confidence 3 334566777777777654 56799999999999999999999999999999999999999999999999 999999
Q ss_pred EEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 255 v~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.|+++++..|...++++++.++.
T Consensus 313 v~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp EESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred EEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 999999999999 999999999999999999999999999999999999999999999999998764
No 6
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-43 Score=307.19 Aligned_cols=294 Identities=30% Similarity=0.535 Sum_probs=249.6
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+..+...+++++||++|+++|+.|+.+.++++....++.+..++|+.........+. +++|+|+||+++.+.+......
T Consensus 66 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~ 144 (367)
T 1hv8_A 66 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLN 144 (367)
T ss_dssp HHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSC
T ss_pred HHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcc
Confidence 334445568899999999999999999999998887888988888876544433333 4799999999999999887777
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+.+++++|+||+|.+.++++...+..++..+.. +.+++++|||+++........++..+....... ..
T Consensus 145 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~ 212 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGFIKDVEKILNACNK--------DKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NA 212 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS--------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SS
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCC--------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CC
Confidence 899999999999999988888888877766543 339999999999988887777766554433221 12
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.+.+.+... ....+...+.+.+.. .+.++||||++.+.++.+++.|+..+..+..+||+++..+|..+++.|++
T Consensus 213 ~~~~~~~~~-~~~~~~~~l~~~l~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-- 286 (367)
T 1hv8_A 213 NIEQSYVEV-NENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-- 286 (367)
T ss_dssp SSEEEEEEC-CGGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT--
T ss_pred CceEEEEEe-ChHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc--
Confidence 334444443 356788888888873 67799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.+++++++.|...++.+++.++.+
T Consensus 287 ~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 287 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred CCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999988654
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.8e-43 Score=309.99 Aligned_cols=294 Identities=26% Similarity=0.438 Sum_probs=241.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
..+++++||++|+++|+.|+.+.++++.... ++++..++|+.........+. +.++|+|+||+++...+......+.+
T Consensus 73 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 73 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3456799999999999999999999997765 688989988876554444332 34799999999999998888778899
Q ss_pred CcEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc-cccc
Q 047490 92 IKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK-KIAS 169 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 169 (323)
++++|+||+|++.++ ++...+..++..... ..+++++|||+++.........+..+..+....... ....
T Consensus 153 ~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (391)
T 1xti_A 153 IKHFILDECDKMLEQLDMRRDVQEIFRMTPH--------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 224 (391)
T ss_dssp CSEEEECSHHHHTSSHHHHHHHHHHHHTSCS--------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTT
T ss_pred cCEEEEeCHHHHhhccchHHHHHHHHhhCCC--------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCccc
Confidence 999999999999763 455555555554432 349999999999998888888877665554433222 2233
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
..+.+.. .....+...+.+++... .++++||||++.+.++.+++.|++.+..+..+||+++..+|..+++.|++ |
T Consensus 225 ~~~~~~~-~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~ 299 (391)
T 1xti_A 225 LQQYYVK-LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--F 299 (391)
T ss_dssp CEEEEEE-CCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--T
T ss_pred ceEEEEE-cCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc--C
Confidence 3344443 34566888888888764 66899999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHh
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRK 320 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~ 320 (323)
+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++.. +...++.+++.++.
T Consensus 300 ~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (391)
T 1xti_A 300 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 372 (391)
T ss_dssp CCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred CCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcC
Confidence 99999999999999999 8999999999999999999999999999999999999976 45667888777653
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.2e-42 Score=306.26 Aligned_cols=291 Identities=26% Similarity=0.437 Sum_probs=245.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
...+++++||++|+++|+.|+.+.++++....++.+....++...... ..+++|+|+||+++...+.+....++++
T Consensus 71 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 146 (395)
T 3pey_A 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKI 146 (395)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTC
T ss_pred cCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccC
Confidence 345678999999999999999999999988778888888777543332 2257999999999999998887889999
Q ss_pred cEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 93 KYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 93 ~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++||+||+|++.+ .++...+..+...+.. +.+++++|||+++.........+.....+.............
T Consensus 147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (395)
T 3pey_A 147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPK--------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIK 218 (395)
T ss_dssp CEEEEETHHHHHHSTTHHHHHHHHHHTSCT--------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEE
T ss_pred CEEEEEChhhhcCccccHHHHHHHHHhCCC--------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccccc
Confidence 9999999999987 4566666666655543 349999999999998888888877776666555555556666
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
+.+........+...+..++... .++++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~ 294 (395)
T 3pey_A 219 QLYMDCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE--GRS 294 (395)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT--TSC
T ss_pred EEEEEcCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC--CCC
Confidence 66776666677878887777654 56799999999999999999999999999999999999999999999999 999
Q ss_pred CEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHH
Q 047490 252 PTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIR 319 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~ 319 (323)
+|||||+++++|+|+ ++++||++++|+ |...|.||+||+||.|+.|.+++++... +...++.+++.++
T Consensus 295 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999 999999999998 9999999999999999999999999875 4556777776655
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.3e-42 Score=307.83 Aligned_cols=294 Identities=26% Similarity=0.429 Sum_probs=247.1
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMVYG 90 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~~~ 90 (323)
...+++++||++|+++|+.|+.+.++++.... +..+....++....... ..+++|+|+||+++.+.+.+ ....++
T Consensus 91 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred hcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChh
Confidence 34566799999999999999999999987653 56777777765543322 34579999999999998865 455678
Q ss_pred CCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 91 DIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
+++++|+||+|++.+ .++......+...+.. +.+++++|||+++.........+..+..+...........
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 239 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT--------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTT
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC--------CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccC
Confidence 999999999999987 5677777776666543 3499999999999998888888887777666655556666
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+.+........+...+.+.+... .++++||||++.+.++.+++.|++.+..+..+||+|+..+|..+++.|++ |
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g 315 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--G 315 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT--T
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC--C
Confidence 7777777766677888888887764 56799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCCc-HHHHHHHHHHHHhc
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIEEAIRKN 321 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~i~~~l~~~ 321 (323)
+.+|||||+++++|+|+ ++++||+++.|. +...|.||+||+||.|+.|.++++++..+ ...++.+++.++..
T Consensus 316 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 316 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp SCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 99999999999999999 999999999994 66899999999999999999999999764 78888998887643
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-44 Score=319.23 Aligned_cols=295 Identities=28% Similarity=0.492 Sum_probs=116.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
...+++++||++|+++|+.|+.+.++++....++++..++|+.........+. +++|+|+||+++...+......+.++
T Consensus 85 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 85 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 34567899999999999999999999998888889999998876544433333 47999999999999998877778899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+++|+||+|++.++++...+..++..+... .+++++|||+++.........+..+..+...........+.+
T Consensus 164 ~~vIiDEah~~~~~~~~~~~~~~~~~~~~~--------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 1fuu_A 164 KMFILDEADEMLSSGFKEQIYQIFTLLPPT--------TQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQ 235 (394)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTT--------CEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------
T ss_pred cEEEEEChHHhhCCCcHHHHHHHHHhCCCC--------ceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceE
Confidence 999999999999888888888888776543 399999999999888888777776665554443334444555
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+........+...+.+++... .++++||||++.+.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.+
T Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~ 311 (394)
T 1fuu_A 236 FYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSR 311 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC--CCCc
Confidence 5555554455666676666553 45799999999999999999999999999999999999999999999998 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.|+++++..|...++.+++.++.
T Consensus 312 vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 312 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999 999999999999999999999999999999999999999999999988887654
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.2e-42 Score=317.08 Aligned_cols=301 Identities=26% Similarity=0.453 Sum_probs=237.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcC-CCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDG-NMV 88 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~-~~~ 88 (323)
..++++|||+||++|+.|+.+.++++... ....+..+.|+.........+ ..+++|+|+||+++...+.+. ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 34679999999999999999999998632 245677788886655544443 336899999999999888764 345
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc----cc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST----LH 164 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~----~~ 164 (323)
++++++||+||||++.+++|.+.+..++..+....... ..+++++++|||+++.........+..+....... ..
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~-~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC-TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhccc-ccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 78899999999999999999999999988876543211 12569999999999988887777766554433221 11
Q ss_pred cccccceeeEEeccCChhHHHHH----HHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHH
Q 047490 165 KKIASARHDFIKLSGSENKLEAL----LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQER 237 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l----~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r 237 (323)
.....+.+.+........+...+ .+.+... ..+.++||||+++..++.+++.|++. +..+..+||+|+..+|
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 12223334444444333333333 3333221 35679999999999999999999876 8899999999999999
Q ss_pred HHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 238 ~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
..++++|++ |+.+|||||+++++|+|+ ++++||++++|.+...|.||+||+||.|+.|.+++++++.|...++.+++
T Consensus 331 ~~~~~~F~~--g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 331 TSLVKRFKK--DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp HHHHHHHHH--CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhhc--CCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHH
Confidence 999999999 999999999999999999 89999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 047490 317 AIR 319 (323)
Q Consensus 317 ~l~ 319 (323)
..+
T Consensus 409 ~~~ 411 (579)
T 3sqw_A 409 AKN 411 (579)
T ss_dssp HHC
T ss_pred HhC
Confidence 653
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.6e-42 Score=315.71 Aligned_cols=300 Identities=26% Similarity=0.465 Sum_probs=236.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcC-CCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDG-NMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~-~~~~ 89 (323)
.++++|||+||++|+.|+.+.++++... ....+..+.|+.........+ ..+++|+|+||+++...+.+. ...+
T Consensus 145 ~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 224 (563)
T 3i5x_A 145 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 224 (563)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccc
Confidence 3579999999999999999999997542 235677788886655444433 346899999999999888764 3457
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc----cc
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL----HK 165 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~----~~ 165 (323)
+++++||+||||++.+++|.+.+..++..+....... ..++|++++|||+++.........+..+........ ..
T Consensus 225 ~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~-~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 225 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC-TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred ccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccC-ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 8899999999999999999999999988776543211 235699999999999888777766665443332211 11
Q ss_pred ccccceeeEEeccCChhHHHHHHH----HhccCCCCCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHHH
Q 047490 166 KIASARHDFIKLSGSENKLEALLQ----VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQERV 238 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~----~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~ 238 (323)
....+.+.+........+...+.. .+... ..+.++||||++++.++.+++.|++. +..+..+||+|++.+|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Confidence 222333444444433344333333 33221 35679999999999999999999876 88999999999999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
.+++.|++ |+.+|||||+++++|+|+ ++++||++++|.+...|.||+||+||.|+.|.++++++..|...++.+++.
T Consensus 383 ~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 383 SLVKRFKK--DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHHHHH--CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 99999999 999999999999999999 899999999999999999999999999999999999999999999998876
Q ss_pred HH
Q 047490 318 IR 319 (323)
Q Consensus 318 l~ 319 (323)
.+
T Consensus 461 ~~ 462 (563)
T 3i5x_A 461 KN 462 (563)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.6e-41 Score=291.52 Aligned_cols=280 Identities=31% Similarity=0.525 Sum_probs=229.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||++|+++|+.|+.+.++++....+.++..++|+.........+.+ ++|+|+||+++.+.+......+.+++++|
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVI 134 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEE
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEE
Confidence 67899999999999999999999988878899999888765554444443 79999999999999888777788999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||+|++.++++...+..++...... .+++++|||+++.....+...+..+..+... .......+.+..
T Consensus 135 iDEah~~~~~~~~~~~~~~~~~~~~~--------~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 203 (337)
T 2z0m_A 135 IDEADLMFEMGFIDDIKIILAQTSNR--------KITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVH 203 (337)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHCTTC--------SEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEE
T ss_pred EEChHHhhccccHHHHHHHHhhCCcc--------cEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEE
Confidence 99999999988888888887766543 3889999999999888888877766554322 223334444554
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
....... ..+.+.. ..++++||||++.+.++.+++.|+ .+..+||+++..+|.+++++|++ |+.+||||
T Consensus 204 ~~~~~~~---~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~ 272 (337)
T 2z0m_A 204 VKDDWRS---KVQALRE--NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE--GEYDMLIT 272 (337)
T ss_dssp CSSSSHH---HHHHHHT--CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT--TSCSEEEE
T ss_pred eChHHHH---HHHHHHh--CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc--CCCcEEEE
Confidence 4433222 2233333 366899999999999999999887 57889999999999999999999 99999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.+++++. .|...++.+++.+++
T Consensus 273 T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 273 TDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp CHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999999 99999999999999999999999999999999999999 899999999888764
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-42 Score=309.01 Aligned_cols=291 Identities=25% Similarity=0.441 Sum_probs=215.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+++++||++|+++|+.|+.+.+++++...+..+....++...... ..+++|+|+||+++...+......+++++
T Consensus 186 ~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~ 261 (508)
T 3fho_A 186 SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQLDARDIK 261 (508)
T ss_dssp TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEECHHHHHHHHHcCCccccCCC
Confidence 34577999999999999999999999987776666666655433222 22579999999999999988878889999
Q ss_pred EEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 94 YLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 94 ~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+||+||+|++.+ .++...+..+...+... .+++++|||+++........+...+..+.............+
T Consensus 262 lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~--------~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 333 (508)
T 3fho_A 262 VFVLDEADNMLDQQGLGDQSMRIKHLLPRN--------TQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQ 333 (508)
T ss_dssp EEEECCHHHHTTC--CHHHHHHHHHHSCTT--------CEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCC
T ss_pred EEEEechhhhcccCCcHHHHHHHHHhCCcC--------CeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceE
Confidence 999999999987 56777777777766543 399999999999888888888777766655554555556666
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+........+...+.+++... .++++||||+++++++.+++.|.+.+..+..+||+++..+|..+++.|++ |+.+
T Consensus 334 ~~~~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~--g~~~ 409 (508)
T 3fho_A 334 LYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV--GTSK 409 (508)
T ss_dssp EEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS--SSCC
T ss_pred EEEECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCe
Confidence 6777666777888888888764 56799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCC------CCchhhhhhhcccccCCCcceEEEEeeC-CcHHHHHHHHHHHHh
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFP------LNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLADRIEEAIRK 320 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~i~~~l~~ 320 (323)
|||||+++++|+|+ ++++||+++.| .|...|.||+||+||.|+.|.+++++.. .+...++.+++.++.
T Consensus 410 VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 410 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 99999999999999 99999999999 7899999999999999999999999984 566778888877654
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=312.56 Aligned_cols=292 Identities=26% Similarity=0.434 Sum_probs=105.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMVYGD 91 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~~~~ 91 (323)
..+++++|||+||++|+.|+.+.++++.... ++.+....++....... ..+++|+|+||+++.+++.+ ....+++
T Consensus 159 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 3556799999999999999999999887643 46666666665443322 33568999999999998866 3456789
Q ss_pred CcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 92 IKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 92 ~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+++||+||+|++.+ .++......+...+.. +.|++++|||+++.........+..+..+...........+
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 307 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 307 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTSCT--------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhCCc--------cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCc
Confidence 99999999999986 4566666666655543 34999999999999988888888777666655555555556
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.+.+........+...+...+... .+.++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++ |+
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~--g~ 383 (479)
T 3fmp_B 308 KQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--GK 383 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc--CC
Confidence 666666665566777777777653 45799999999999999999999999999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCCc-HHHHHHHHHHHHh
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIEEAIRK 320 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~i~~~l~~ 320 (323)
.+|||||+++++|+|+ ++++||++|+|. +...|.||+||+||.|+.|.++++++..+ ...++.+++.++.
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 9999999999999999 999999999994 66899999999999999999999998765 7778888877754
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.9e-39 Score=296.56 Aligned_cols=283 Identities=18% Similarity=0.252 Sum_probs=218.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc------cCCCCCEEEeChHHHH------HHHHc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS------LNNPIDMVVGTPGRIL------QHIED 84 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Iii~Tp~~l~------~~~~~ 84 (323)
++++|||+|+++|+.|+.+.++++ ++.+..+.|+......... ...+++|+|+||+++. +.+..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~ 159 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 159 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh
Confidence 458999999999999999999987 5688888888655433221 2456899999999874 22222
Q ss_pred CCCCCCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc
Q 047490 85 GNMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST 162 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 162 (323)
...+.+++++|+||||++.+++ |.+.+..+. .+.... .+.+++++|||+++.....+...+..........
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~-~l~~~~-----~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~ 232 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG-ILKRQF-----PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA 232 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG-HHHHHC-----TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHH-HHHHhC-----CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec
Confidence 2346789999999999999887 777665421 111111 1349999999999988777776665432221111
Q ss_pred cccccccceeeEEeccC-ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHH
Q 047490 163 LHKKIASARHDFIKLSG-SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 241 (323)
....+++...+..... ...+...+.+.+... ..+.++||||++++.++.+++.|+..+..+..+||+|+..+|..++
T Consensus 233 -~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 233 -SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp -CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred -CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 1122223222222221 234667777877653 2568999999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
++|++ |+.+|||||+++++|+|+ ++++||++++|.|...|.|++||+||.|++|.|+++++..|...++.+
T Consensus 311 ~~F~~--g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 311 RKWSA--NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp HHHHT--TSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHc--CCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999 999999999999999999 999999999999999999999999999999999999998887665554
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.6e-39 Score=290.16 Aligned_cols=279 Identities=19% Similarity=0.235 Sum_probs=213.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.++||++|+++|+.|+.+.++++ ++.+..++++........ ...+.++|+++||+++........+...++
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~ 140 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNP 140 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCE
T ss_pred CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCC
Confidence 357999999999999999999886 567777777755433221 223568999999999853211112234789
Q ss_pred cEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc--Cceeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 168 (323)
+++|+||+|++.+++ |.+.+..+..... .. .+.+++++|||+++.....+...+. .+....... ..+
T Consensus 141 ~~vViDEaH~i~~~g~~fr~~~~~l~~l~~-~~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ 211 (523)
T 1oyw_A 141 VLLAVDEAHCISQWGHDFRPEYAALGQLRQ-RF-----PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRP 211 (523)
T ss_dssp EEEEESSGGGGCTTSSCCCHHHHGGGGHHH-HC-----TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC---CCT
T ss_pred CEEEEeCccccCcCCCccHHHHHHHHHHHH-hC-----CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC---CCC
Confidence 999999999999877 6666655432222 11 1348999999999887665554443 222221111 112
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++.. .+.....+...+.+.+... .++++||||++++.++.+++.|+..+..+..+||+|+.++|..+++.|++
T Consensus 212 ~l~~---~v~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-- 284 (523)
T 1oyw_A 212 NIRY---MLMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-- 284 (523)
T ss_dssp TEEE---EEEECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--
T ss_pred ceEE---EEEeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc--
Confidence 2222 2222355777888888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+.+|||||+++++|+|+ ++++||++++|.|...|.|++||+||.|++|.++++++..|...++.+.
T Consensus 285 g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp TSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999988876655544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.8e-39 Score=286.35 Aligned_cols=282 Identities=18% Similarity=0.278 Sum_probs=213.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC---CccccccCC-CCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL---RPQEDSLNN-PIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.+++++|||+||++|+.|+.+.++++.. .++++..++|+... ..+...+.. .++|+|+||+++.+.+.. ..+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~ 138 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 138 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccc
Confidence 4578999999999999999999999987 78899999999776 223333333 489999999999887764 5567
Q ss_pred CCcEEeecchhhhhc-----------CCChhh-HHHHHhhhcc--ccC-CCCCCCceEEEEEee-cchhhHHHHHHHhcC
Q 047490 91 DIKYLVLDEADTMFD-----------RGFGPD-IRKFLVPLKN--RAS-KPNGQGFQTVLVSAT-MTKAVQKLVDEECQG 154 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~-----------~~~~~~-~~~i~~~~~~--~~~-~~~~~~~~~i~~sat-~~~~~~~~~~~~~~~ 154 (323)
++++||+||+|++.. .++.+. +..++..++. ... .....+.+++++||| .+......+......
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 899999999998764 556666 6777766641 000 001134599999999 454444333222222
Q ss_pred ceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeE-EecCCCC
Q 047490 155 IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV-NYHGEVP 233 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 233 (323)
. ...........+.+.+... ++...+.+++.. .++++||||+++..++.+++.|+..+..+. .+||.
T Consensus 219 ~---~~~~~~~~~~~i~~~~~~~----~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-- 286 (414)
T 3oiy_A 219 F---TVGRLVSVARNITHVRISS----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-- 286 (414)
T ss_dssp C---CSSCCCCCCCSEEEEEESS----CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH--
T ss_pred c---CcCccccccccchheeecc----CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc--
Confidence 1 1111222333444444433 244555666655 247999999999999999999999999998 88985
Q ss_pred HHHHHHHHHhccccCCCCCEEEE----ecccccccCC-C-CCEEEEcCCC--CCchhhhhhhcccccCC----CcceEEE
Q 047490 234 AQERVENLNKFKNEDGDCPTLVC----TDLAARGLDL-D-VDHVIMFDFP--LNSIDYLHRTGRTARMG----AKGKVTS 301 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g~~~ilv~----t~~~~~Gid~-~-~~~vi~~~~p--~s~~~~~Q~~GR~~R~~----~~g~~~~ 301 (323)
+|+ ++.|++ |+.+|||| |+++++|+|+ + +++||++++| .+...|.||+||+||.| ..|.+++
T Consensus 287 --~r~--~~~f~~--g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~ 360 (414)
T 3oiy_A 287 --EKN--FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVI 360 (414)
T ss_dssp --HHH--HHHHHT--TSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEE
T ss_pred --chH--HHHHhC--CCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEE
Confidence 343 999999 99999999 9999999999 8 9999999999 99999999999999987 4789998
Q ss_pred EeeCCcHHHHHHHHHHHH
Q 047490 302 LVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 302 ~~~~~~~~~~~~i~~~l~ 319 (323)
++ .|...++.+++.++
T Consensus 361 ~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 361 FE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EC--CCHHHHHHHHHHHH
T ss_pred EE--ccHHHHHHHHHHhc
Confidence 88 67888888888877
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-38 Score=291.56 Aligned_cols=286 Identities=17% Similarity=0.251 Sum_probs=163.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||+++.+.+..... .+.++++|
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 134 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEE
Confidence 78999999999999999999999998888999999999876665555555689999999999999988766 78999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh----hHHHHH------HHhcCceeeeccccc-
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA----VQKLVD------EECQGIAHLRTSTLH- 164 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~----~~~~~~------~~~~~~~~~~~~~~~- 164 (323)
|+||||++.+++. +..++..+............+++++|||++.. ...+.. ..+... .+......
T Consensus 135 ViDEah~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~~ 210 (556)
T 4a2p_A 135 IFDECHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENI 210 (556)
T ss_dssp EEETGGGCSTTSH---HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS-EEECCCTTH
T ss_pred EEECCcccCCcch---HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe-Eecchhcch
Confidence 9999999987652 33332222111000111245899999999532 111111 111100 00000000
Q ss_pred ----cccccceeeEEe----------------------------------------------------------------
Q 047490 165 ----KKIASARHDFIK---------------------------------------------------------------- 176 (323)
Q Consensus 165 ----~~~~~~~~~~~~---------------------------------------------------------------- 176 (323)
.........+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (556)
T 4a2p_A 211 QELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED 290 (556)
T ss_dssp HHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc
Confidence 000000000000
Q ss_pred ----------------------------------------------------------------------------ccCC
Q 047490 177 ----------------------------------------------------------------------------LSGS 180 (323)
Q Consensus 177 ----------------------------------------------------------------------------~~~~ 180 (323)
....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 370 (556)
T 4a2p_A 291 KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNE 370 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCC
Confidence 0012
Q ss_pred hhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 181 ENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN------------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..|...|.+.+.+.. ..+.++||||+++.+++.+++.|++. |.....+||+|+..+|..++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 446777777776543 46789999999999999999999875 4455567888999999999999996
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|+++|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. +.|.++++++..+..
T Consensus 451 -~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 451 -SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ----CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred -cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 5778899999999999999 99999999999999999999999 998 889999999987654
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7e-38 Score=287.66 Aligned_cols=291 Identities=18% Similarity=0.252 Sum_probs=190.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||+++...+..... .+.++++|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 131 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLM 131 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEE
Confidence 78999999999999999999999998888999999999876665555555689999999999999988766 68899999
Q ss_pred eecchhhhhcCCChhhHHHHH-hhhccccCCCCCCCceEEEEEeecchhh-------HHH---HHHHhcCceeeeccccc
Q 047490 96 VLDEADTMFDRGFGPDIRKFL-VPLKNRASKPNGQGFQTVLVSATMTKAV-------QKL---VDEECQGIAHLRTSTLH 164 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~i~~sat~~~~~-------~~~---~~~~~~~~~~~~~~~~~ 164 (323)
|+||||++.+.+ + +..++ ..+............+++++|||+.... ... +...+... .+......
T Consensus 132 ViDEah~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~ 207 (555)
T 3tbk_A 132 IFDECHNTSKNH--P-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDN 207 (555)
T ss_dssp EETTGGGCSTTC--H-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSC
T ss_pred EEECccccCCcc--h-HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccC
Confidence 999999997754 2 33332 2222222222233569999999995421 111 11111110 00000000
Q ss_pred -----cccccceeeEE----------------------------------------------------------------
Q 047490 165 -----KKIASARHDFI---------------------------------------------------------------- 175 (323)
Q Consensus 165 -----~~~~~~~~~~~---------------------------------------------------------------- 175 (323)
.........+.
T Consensus 208 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 287 (555)
T 3tbk_A 208 VAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQM 287 (555)
T ss_dssp HHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhc
Confidence 00000000000
Q ss_pred -----------------------------------------------------------------------------ecc
Q 047490 176 -----------------------------------------------------------------------------KLS 178 (323)
Q Consensus 176 -----------------------------------------------------------------------------~~~ 178 (323)
...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (555)
T 3tbk_A 288 ADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPS 367 (555)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCC
Confidence 000
Q ss_pred CChhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhCC------------CeeEEecCCCCHHHHHHHHHhc
Q 047490 179 GSENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQ------------ISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f 244 (323)
....|...+.+++.... ..+.++||||+++.+++.+++.|+..+ .....+||+|+..+|.+++++|
T Consensus 368 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 368 NENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 12446667777775533 345899999999999999999998763 2344556799999999999999
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
++ +|+.+|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. +.|.++++++..+......+
T Consensus 448 ~~-~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 448 RA-SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -----CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred hc-CCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 96 4778999999999999999 99999999999999999999999 888 89999999998877655555
No 21
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-36 Score=275.05 Aligned_cols=283 Identities=19% Similarity=0.285 Sum_probs=205.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++||++|+++|+.||.+++++++.....++..++|+.......... .+++|+|+||+.+...+......+.++++
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 128 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSL 128 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSE
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceE
Confidence 45779999999999999999999999854456888888876544332222 24799999999999988887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH---HHHHhcCceeeeccccc---cccc
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL---VDEECQGIAHLRTSTLH---KKIA 168 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~ 168 (323)
||+||||++.+......+...+..... ..+++++||||.+..... ................. ....
T Consensus 129 vIiDEaH~~~~~~~~~~~~~~~~~~~~--------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 200 (494)
T 1wp9_A 129 IVFDEAHRAVGNYAYVFIAREYKRQAK--------NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVK 200 (494)
T ss_dssp EEEETGGGCSTTCHHHHHHHHHHHHCS--------SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCC
T ss_pred EEEECCcccCCCCcHHHHHHHHHhcCC--------CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcC
Confidence 999999998754322222222222211 238999999997432222 21111100000000000 0000
Q ss_pred cceeeE--------------------------------------------------------------------------
Q 047490 169 SARHDF-------------------------------------------------------------------------- 174 (323)
Q Consensus 169 ~~~~~~-------------------------------------------------------------------------- 174 (323)
.....+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (494)
T 1wp9_A 201 GIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMAL 280 (494)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHH
T ss_pred CCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Confidence 000000
Q ss_pred -------------------------------------------------------EeccCChhHHHHHHHHhccCC--CC
Q 047490 175 -------------------------------------------------------IKLSGSENKLEALLQVLEPSL--SK 197 (323)
Q Consensus 175 -------------------------------------------------------~~~~~~~~k~~~l~~~l~~~~--~~ 197 (323)
........|...+.+++.... ..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 360 (494)
T 1wp9_A 281 KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ 360 (494)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCC
Confidence 000023457777777777644 46
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecC--------CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG--------EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DV 268 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~ 268 (323)
+.++||||++...++.+++.|+..++.+..+|| +++..+|.+++++|++ |+++|||||+++++|+|+ .+
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--GEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH--TSCSEEEECGGGGGGGGSTTC
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc--CCceEEEECCccccCCCchhC
Confidence 789999999999999999999999999999999 9999999999999999 999999999999999999 99
Q ss_pred CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 269 DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 269 ~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++||++++|+|+..|.||+||+||.|+ |.++.+++..+..
T Consensus 439 ~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 439 DLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp CEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred CEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 999999999999999999999999998 9999999987653
No 22
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-36 Score=288.47 Aligned_cols=286 Identities=18% Similarity=0.239 Sum_probs=168.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+|+++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||+++.+.+..... .++++++|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 78999999999999999999999998888999999999876666555556789999999999999887766 68899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh-------HHHHH---HHhcCceeeecccc--
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV-------QKLVD---EECQGIAHLRTSTL-- 163 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~-------~~~~~---~~~~~~~~~~~~~~-- 163 (323)
|+||||++...+. +..++..+............+++++|||+.... ...+. ..+.... +.....
T Consensus 376 ViDEaH~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~-i~~~~~~~ 451 (797)
T 4a2q_A 376 IFDECHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA-ISTVRENI 451 (797)
T ss_dssp EETTGGGCSTTSH---HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE-EECCCTTH
T ss_pred EEECccccCCCcc---HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcE-EecccccH
Confidence 9999999876432 344332222211111122458999999995311 01111 1111000 000000
Q ss_pred ---ccccccceeeEE-----------------------------------------------------------------
Q 047490 164 ---HKKIASARHDFI----------------------------------------------------------------- 175 (323)
Q Consensus 164 ---~~~~~~~~~~~~----------------------------------------------------------------- 175 (323)
..........+.
T Consensus 452 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 531 (797)
T 4a2q_A 452 QELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED 531 (797)
T ss_dssp HHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccc
Confidence 000000000000
Q ss_pred ---------------------------------------------------------------------------eccCC
Q 047490 176 ---------------------------------------------------------------------------KLSGS 180 (323)
Q Consensus 176 ---------------------------------------------------------------------------~~~~~ 180 (323)
.....
T Consensus 532 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 611 (797)
T 4a2q_A 532 KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNE 611 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00012
Q ss_pred hhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 181 ENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN------------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..|...|.+.+...+ ..+.++||||+++..++.+++.|+.. |.....+||+|+..+|..++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 446667777776532 45689999999999999999999763 4455667899999999999999996
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|.++|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. +.|.++++++..+..
T Consensus 692 -~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 692 -SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ---CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred -cCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 4788999999999999999 99999999999999999999999 999 899999999887654
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.9e-36 Score=285.04 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=178.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||++|.+.+..... .++++++|
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~v 140 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 140 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEE
Confidence 47999999999999999999999998778899999999876655555545689999999999999988766 68899999
Q ss_pred eecchhhhhcCCChhhHHHHHh-hhccccCCCCCCCceEEEEEeecch-------hhHHHHHHHh---------------
Q 047490 96 VLDEADTMFDRGFGPDIRKFLV-PLKNRASKPNGQGFQTVLVSATMTK-------AVQKLVDEEC--------------- 152 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~i~~sat~~~-------~~~~~~~~~~--------------- 152 (323)
|+||||++.+.. .+..++. .+............+++++|||+.. .....+...+
T Consensus 141 ViDEaH~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 217 (696)
T 2ykg_A 141 IFDECHNTSKQH---PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNL 217 (696)
T ss_dssp EEETGGGCSTTC---HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTH
T ss_pred EEeCCCcccCcc---cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccch
Confidence 999999987543 2333332 2221111111234599999999971 2111111111
Q ss_pred -------cCceeeecc-cc------c------------------------------------------------------
Q 047490 153 -------QGIAHLRTS-TL------H------------------------------------------------------ 164 (323)
Q Consensus 153 -------~~~~~~~~~-~~------~------------------------------------------------------ 164 (323)
..+...... .. .
T Consensus 218 ~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (696)
T 2ykg_A 218 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 297 (696)
T ss_dssp HHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC----
T ss_pred HHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcc
Confidence 000000000 00 0
Q ss_pred --------------------------------------------------cccccceeeEE---------------eccC
Q 047490 165 --------------------------------------------------KKIASARHDFI---------------KLSG 179 (323)
Q Consensus 165 --------------------------------------------------~~~~~~~~~~~---------------~~~~ 179 (323)
.....+.+.+. ....
T Consensus 298 ~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 377 (696)
T 2ykg_A 298 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 377 (696)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGG
T ss_pred cchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 00000000000 0001
Q ss_pred ChhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhCC----CeeEEe--------cCCCCHHHHHHHHHhcc
Q 047490 180 SENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQ----ISTVNY--------HGEVPAQERVENLNKFK 245 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~ 245 (323)
...|...|.+++.... ..+.++||||+++.+++.+++.|+..+ +.+..+ ||+|+..+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 3457777777776542 356799999999999999999999887 777777 55999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
+ +|+++|||||+++++|+|+ ++++||+||+|+|...|.||+|| ||. +.|.++.+++..+......+
T Consensus 458 ~-~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 458 A-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred h-cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 4 3788999999999999999 99999999999999999999999 998 78999999998777554444
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-35 Score=280.50 Aligned_cols=274 Identities=17% Similarity=0.237 Sum_probs=207.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.++||++|+++|+.|+++.+++++. .+..++|+.... .+++|+|+||++|.+++.++...++++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 468999999999999999999999875 577777775432 247899999999999988887788999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|++.+.+++..+..++..++. +++++++|||+++.. ..++......+..+..... ......++
T Consensus 197 ViDEaH~l~d~~rg~~~e~il~~l~~--------~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~ 266 (1010)
T 2xgj_A 197 IFDEVHYMRDKERGVVWEETIILLPD--------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHY 266 (1010)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHSCT--------TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEE
T ss_pred EEechhhhcccchhHHHHHHHHhcCC--------CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEE
Confidence 99999999998888888888877653 349999999998653 3444444333332221111 11111122
Q ss_pred EEecc---------CC---------------------------------------------hhHHHHHHHHhccCCCCCC
Q 047490 174 FIKLS---------GS---------------------------------------------ENKLEALLQVLEPSLSKGN 199 (323)
Q Consensus 174 ~~~~~---------~~---------------------------------------------~~k~~~l~~~l~~~~~~~~ 199 (323)
+.... .. ...+..++..+... ...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~ 344 (1010)
T 2xgj_A 267 LFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYN 344 (1010)
T ss_dssp EEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHH--TCC
T ss_pred EEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCC
Confidence 11100 00 11223344444321 345
Q ss_pred eEEEEecCcccHHHHHHHHhhCCC---------------------------------------eeEEecCCCCHHHHHHH
Q 047490 200 KVMVFCNTLNSSRAVDHFLNENQI---------------------------------------STVNYHGEVPAQERVEN 240 (323)
Q Consensus 200 ~~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~ 240 (323)
++||||+++..|+.+++.|...++ ++..+||+|++.+|+.+
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 999999999999999999876433 27889999999999999
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCCEEEE----cCC----CCCchhhhhhhcccccCCC--cceEEEEeeCC-cH
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FDF----PLNSIDYLHRTGRTARMGA--KGKVTSLVAKK-DV 308 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~~----p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~-~~ 308 (323)
++.|++ |.++|||||+++++|+|+ .+++||+ ||. |.|..+|.||+||+||.|. .|.|+++++.. +.
T Consensus 425 e~~F~~--G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 425 EILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp HHHHHT--TCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred HHHHhc--CCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 999999 999999999999999999 8999998 888 8899999999999999996 59999999865 55
Q ss_pred HHHHHH
Q 047490 309 LLADRI 314 (323)
Q Consensus 309 ~~~~~i 314 (323)
..+.++
T Consensus 503 ~~~~~l 508 (1010)
T 2xgj_A 503 QVAKGM 508 (1010)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 25
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-35 Score=285.01 Aligned_cols=287 Identities=17% Similarity=0.226 Sum_probs=169.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.++++++..++++..++|+.........+..+++|+|+||+++.+.+..... .++++++|
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 78999999999999999999999998888999999999876665555555689999999999999887666 68889999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh----H---HHHH-------------------
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV----Q---KLVD------------------- 149 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~----~---~~~~------------------- 149 (323)
|+||||++...+ + +..++..+............+++++|||+.... . ..+.
T Consensus 376 ViDEaH~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~ 452 (936)
T 4a2w_A 376 IFDECHNTTGNH--P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQ 452 (936)
T ss_dssp EEETGGGCSTTC--H-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHH
T ss_pred EEECccccCCCc--c-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHH
Confidence 999999987643 2 444433332211111122458999999995311 0 1111
Q ss_pred ---HHhcCceeeecccccccc------------------------------c----cc----------------------
Q 047490 150 ---EECQGIAHLRTSTLHKKI------------------------------A----SA---------------------- 170 (323)
Q Consensus 150 ---~~~~~~~~~~~~~~~~~~------------------------------~----~~---------------------- 170 (323)
.+...+............ . +.
T Consensus 453 ~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~ 532 (936)
T 4a2w_A 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK 532 (936)
T ss_dssp HHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH
T ss_pred HHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc
Confidence 111111000000000000 0 00
Q ss_pred ---------------------------------------eee------------------------------EEeccCCh
Q 047490 171 ---------------------------------------RHD------------------------------FIKLSGSE 181 (323)
Q Consensus 171 ---------------------------------------~~~------------------------------~~~~~~~~ 181 (323)
... ........
T Consensus 533 ~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~ 612 (936)
T 4a2w_A 533 EEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNEN 612 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 000 00000124
Q ss_pred hHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 182 NKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN------------QISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 182 ~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
.|...|.++|.+.. ..+.++||||+++..++.+++.|++. |.....+||+|+..+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~- 691 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT- 691 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-
Confidence 46677777776643 45789999999999999999999876 4455667899999999999999996
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|+++|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. ..|.++.+++..+..
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 4788999999999999999 99999999999999999999999 998 789999999876554
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=286.97 Aligned_cols=273 Identities=18% Similarity=0.234 Sum_probs=204.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++++++|++||++|+.|+++.+++++. .+..++|+... ..+++|+|+||++|.+.+.+....++++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 467999999999999999999999876 56677777553 3357999999999999998887778899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|++.+++++..+..++..++. +++++++|||+++. ...++......+..+...... .....++
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~~l~~--------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~ 364 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETIILLPD--------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHY 364 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHHHSCT--------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEE
T ss_pred EEhhhhhccccchHHHHHHHHHhcCC--------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEE
Confidence 99999999988888888888877754 35999999998765 445565555443332221111 1111111
Q ss_pred EEeccC------------------------------------------------------ChhHHHHHHHHhccCCCCCC
Q 047490 174 FIKLSG------------------------------------------------------SENKLEALLQVLEPSLSKGN 199 (323)
Q Consensus 174 ~~~~~~------------------------------------------------------~~~k~~~l~~~l~~~~~~~~ 199 (323)
++.... ...++..++..+... .+.
T Consensus 365 ~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~ 442 (1108)
T 3l9o_A 365 LFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYN 442 (1108)
T ss_dssp EEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCC
T ss_pred EeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCC
Confidence 111000 022333444444332 456
Q ss_pred eEEEEecCcccHHHHHHHHhhCCC---------------------------------------eeEEecCCCCHHHHHHH
Q 047490 200 KVMVFCNTLNSSRAVDHFLNENQI---------------------------------------STVNYHGEVPAQERVEN 240 (323)
Q Consensus 200 ~~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~ 240 (323)
++||||+++..|+.++..|...++ ++..+||+|++.+|..+
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999998865322 27899999999999999
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC--------CchhhhhhhcccccCC--CcceEEEEeeCC-cH
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL--------NSIDYLHRTGRTARMG--AKGKVTSLVAKK-DV 308 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~--------s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~-~~ 308 (323)
++.|++ |.++|||||+++++|+|+ .+++||+++.|+ |..+|.||+||+||.| ..|.|++++... +.
T Consensus 523 ~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 523 EILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp HHHHHH--TCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred HHHHhC--CCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 999999 999999999999999999 999999876643 6667999999999999 688888888765 33
Q ss_pred HHHHH
Q 047490 309 LLADR 313 (323)
Q Consensus 309 ~~~~~ 313 (323)
..+.+
T Consensus 601 ~~~~~ 605 (1108)
T 3l9o_A 601 QVAKG 605 (1108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-34 Score=271.55 Aligned_cols=269 Identities=20% Similarity=0.242 Sum_probs=201.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++.+. ..++++...+|+....... . .+++|+|+||+++..++.+....++++++||
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 6799999999999999999996553 4578999998886654432 2 3579999999999999888766688999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc-c-----
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-A----- 170 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 170 (323)
+||+|.+.+..++..+..++..++ +++++++|||+++. ..+..++..... .......+... .
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~---------~~~ii~lSATl~n~--~~~~~~l~~~~~-~~~~r~~~l~~~~~~~~~ 218 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK---------RRNLLALSATISNY--KQIAKWLGAEPV-ATNWRPVPLIEGVIYPER 218 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH---------TSEEEEEESCCTTH--HHHHHHHTCEEE-ECCCCSSCEEEEEEEECS
T ss_pred EechhhcCCcccchHHHHHHHhcc---------cCcEEEEcCCCCCH--HHHHHHhCCCcc-CCCCCCCCceEEEEecCC
Confidence 999999988788888888887776 23999999999752 223333332211 11000000000 0
Q ss_pred ---eeeEEecc-------CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC------------------
Q 047490 171 ---RHDFIKLS-------GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ------------------ 222 (323)
Q Consensus 171 ---~~~~~~~~-------~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~------------------ 222 (323)
........ ....+...+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 294 (715)
T 2va8_A 219 KKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLD 294 (715)
T ss_dssp STTEEEEEETTSCEEEEESSSHHHHHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHH
T ss_pred cccceeeecCcchhhhcccchHHHHHHHHHHh----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 00011111 12344455555543 56899999999999999999987642
Q ss_pred ------------------CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC----
Q 047490 223 ------------------ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD---- 275 (323)
Q Consensus 223 ------------------~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~---- 275 (323)
..+..+||+|+..+|..+++.|++ |.++|||||+++++|+|+ .+++||+ |+
T Consensus 295 ~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~ 372 (715)
T 2va8_A 295 DIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQ--RKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIA 372 (715)
T ss_dssp TCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCSCEEEECGGGGGSSCCCBSEEEECCC--------
T ss_pred HhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHc--CCCeEEEEChHHhcccCCCceEEEEeCCeeccccCC
Confidence 248899999999999999999999 999999999999999999 8999998 88
Q ss_pred ---CCCCchhhhhhhcccccCC--CcceEEEEeeCCc
Q 047490 276 ---FPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKD 307 (323)
Q Consensus 276 ---~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~ 307 (323)
.|.|...|.||+||+||.| ..|.|+.+++..+
T Consensus 373 ~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 373 GYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 7999999999999999988 4799999998765
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.4e-35 Score=275.32 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=205.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++.+. ..++++..++|+....... .++++|+|+||+++..++.+....++++++||
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 143 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILV 143 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEE
Confidence 6799999999999999999997554 3478999999976654432 23579999999999998888766688999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc---ceee
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS---ARHD 173 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 173 (323)
+||+|.+.+++++..+..++..++. +.+++++|||+++. ..+..++.... +.....+..... ....
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~--------~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~rp~~l~~~~~~~~~ 212 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLG--------KAQIIGLSATIGNP--EELAEWLNAEL-IVSDWRPVKLRRGVFYQGF 212 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBT--------TBEEEEEECCCSCH--HHHHHHTTEEE-EECCCCSSEEEEEEEETTE
T ss_pred EECCcccCCCcccHHHHHHHHHhhc--------CCeEEEEcCCcCCH--HHHHHHhCCcc-cCCCCCCCcceEEEEeCCe
Confidence 9999999988899999999888863 34999999999752 22333333211 111100000000 0000
Q ss_pred EEeccC----ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----------------------------
Q 047490 174 FIKLSG----SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---------------------------- 221 (323)
Q Consensus 174 ~~~~~~----~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------------------------- 221 (323)
...... ...+...+.+.+. +++++||||++++.++.++..|.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 213 VTWEDGSIDRFSSWEELVYDAIR----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp EEETTSCEEECSSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred eeccccchhhhhHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHH
Confidence 111110 1233444444443 5689999999999999999888653
Q ss_pred -----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC----CCCCchhhhhhh
Q 047490 222 -----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD----FPLNSIDYLHRT 287 (323)
Q Consensus 222 -----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~----~p~s~~~~~Q~~ 287 (323)
...+..+||+|+..+|..+++.|++ |.++|||||+++++|+|+ .+++||+ |+ .|.|..+|.||+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRK--GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHC--CCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHH
Confidence 1248999999999999999999999 999999999999999999 8888888 65 588999999999
Q ss_pred cccccCC--CcceEEEEeeCCcH
Q 047490 288 GRTARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 288 GR~~R~~--~~g~~~~~~~~~~~ 308 (323)
||+||.| ..|.|+++++..+.
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCH
T ss_pred hhcCCCCCCCCceEEEEecCccH
Confidence 9999998 57899999998773
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.1e-35 Score=273.79 Aligned_cols=274 Identities=17% Similarity=0.220 Sum_probs=206.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++.+. ..++++...+|+...... ...+++|+|+||+++..++.+....++++++||
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vI 143 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLV 143 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEE
Confidence 6799999999999999999996554 457899999988665443 123689999999999999888766688999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc-----cce
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-----SAR 171 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 171 (323)
+||+|.+.+++++..+..++..+.... .+++++++|||+++. ..+..++.... +.......+.. ...
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~-----~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r~~~l~~~~~~~~~ 215 (702)
T 2p6r_A 144 VDEIHLLDSEKRGATLEILVTKMRRMN-----KALRVIGLSATAPNV--TEIAEWLDADY-YVSDWRPVPLVEGVLCEGT 215 (702)
T ss_dssp ETTGGGGGCTTTHHHHHHHHHHHHHHC-----TTCEEEEEECCCTTH--HHHHHHTTCEE-EECCCCSSCEEEEEECSSE
T ss_pred EeeeeecCCCCcccHHHHHHHHHHhcC-----cCceEEEECCCcCCH--HHHHHHhCCCc-ccCCCCCccceEEEeeCCe
Confidence 999999998888888888887775432 245999999999852 23333443221 11111100000 000
Q ss_pred eeEEecc----CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--------------------------
Q 047490 172 HDFIKLS----GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------------------------- 221 (323)
Q Consensus 172 ~~~~~~~----~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------- 221 (323)
..+.... ....+...+.+.+ .+++++||||++++.++.+++.|.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 216 LELFDGAFSTSRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred eeccCcchhhhhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 0111100 0001444555544 35789999999999999999888642
Q ss_pred ----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC---CCCCchhhhhhhcc
Q 047490 222 ----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD---FPLNSIDYLHRTGR 289 (323)
Q Consensus 222 ----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~---~p~s~~~~~Q~~GR 289 (323)
+..+..+||+|+..+|..+++.|++ |.++|||||+++++|+|+ .+++||+ || .|.|..+|.||+||
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRR--GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHT--TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTT
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHC--CCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhh
Confidence 1357889999999999999999999 999999999999999999 8888888 55 68899999999999
Q ss_pred cccCC--CcceEEEEeeCCcH
Q 047490 290 TARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 290 ~~R~~--~~g~~~~~~~~~~~ 308 (323)
+||.| ..|.|+.+++..+.
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGH
T ss_pred cCCCCCCCCceEEEEecCccH
Confidence 99998 48999999998763
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.6e-35 Score=285.22 Aligned_cols=284 Identities=17% Similarity=0.272 Sum_probs=212.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC---CccccccCC-CCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL---RPQEDSLNN-PIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.+++++|||+||++|+.|+.+.++++. ..++++..++|+... ..+...+.. .++|+|+||+++.+.+.. +.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~ 195 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 195 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hccc
Confidence 457899999999999999999999977 668899999999876 333334443 489999999999887764 5577
Q ss_pred CCcEEeecchhhhhc-----------CCChhh-HHHHHhhhc--cccCC-CCCCCceEEEEEeec-chhhHHHHHHHhcC
Q 047490 91 DIKYLVLDEADTMFD-----------RGFGPD-IRKFLVPLK--NRASK-PNGQGFQTVLVSATM-TKAVQKLVDEECQG 154 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~-----------~~~~~~-~~~i~~~~~--~~~~~-~~~~~~~~i~~sat~-~~~~~~~~~~~~~~ 154 (323)
+++++|+||+|++.. .++... +..++..++ ..... ....+.|++++|||+ +......+......
T Consensus 196 ~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~ 275 (1104)
T 4ddu_A 196 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 275 (1104)
T ss_dssp CCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC
T ss_pred CcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee
Confidence 899999999987654 667776 777777665 11111 111245999999994 54444332222222
Q ss_pred ceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeE-EecCCCC
Q 047490 155 IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV-NYHGEVP 233 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 233 (323)
+...........+.+.+... ++...+.+++.. .++++||||+++..++.+++.|+..++.+. .+||.
T Consensus 276 ---i~v~~~~~~~~~i~~~~~~~----~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-- 343 (1104)
T 4ddu_A 276 ---FTVGRLVSVARNITHVRISS----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-- 343 (1104)
T ss_dssp ---CCCCBCCCCCCCEEEEEESC----CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH--
T ss_pred ---EEeccCCCCcCCceeEEEec----CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc--
Confidence 11122223344455555444 244555666655 247999999999999999999999999998 89992
Q ss_pred HHHHHHHHHhccccCCCCCEEEE----ecccccccCC-C-CCEEEEcCCCC-----------------------------
Q 047490 234 AQERVENLNKFKNEDGDCPTLVC----TDLAARGLDL-D-VDHVIMFDFPL----------------------------- 278 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g~~~ilv~----t~~~~~Gid~-~-~~~vi~~~~p~----------------------------- 278 (323)
|++ ++.|++ |+.+|||| |+++++|+|+ + +++||+||+|.
T Consensus 344 ---rr~-l~~F~~--G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~ 417 (1104)
T 4ddu_A 344 ---EKN-FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQE 417 (1104)
T ss_dssp ---HHH-HHHHHH--TSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCC
T ss_pred ---HHH-HHHHHC--CCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 555 999999 99999999 9999999999 8 99999999998
Q ss_pred -------------------------------------------CchhhhhhhcccccCCCcc--eEEEEeeCCcHHHHHH
Q 047490 279 -------------------------------------------NSIDYLHRTGRTARMGAKG--KVTSLVAKKDVLLADR 313 (323)
Q Consensus 279 -------------------------------------------s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~ 313 (323)
+..+|+||+||+||.|..| .+++++...|...++.
T Consensus 418 ~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~ 497 (1104)
T 4ddu_A 418 NPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFES 497 (1104)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHH
Confidence 6778999999999976433 4555555588888888
Q ss_pred HHHHHH
Q 047490 314 IEEAIR 319 (323)
Q Consensus 314 i~~~l~ 319 (323)
+++.++
T Consensus 498 l~~~~~ 503 (1104)
T 4ddu_A 498 LKTRLL 503 (1104)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888876
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.7e-35 Score=285.13 Aligned_cols=282 Identities=19% Similarity=0.265 Sum_probs=212.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccce----eEEEeecCccCCcc---ccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARF----RSTMVSGGGRLRPQ---EDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+++++|||+||++|+.|+.+.+++++...++ ++..++|+.....+ ...+.+ ++|+|+||++|.+.+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---- 172 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---- 172 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----
Confidence 4789999999999999999999999988787 89999998876553 233344 89999999999987665
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhcccc---CCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA---SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+++++++|+||+|++.+ ++..+..++..+.... ......+.|.+++|||+++. .......+..+..+.......
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~ 249 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRI 249 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEE
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCccc
Confidence 66999999999999988 5677777776653210 00001234789999999876 322222222222222222222
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+.+. ...+...+.+++... ++++||||++++.++.+++.|+.. +.+..+||++. .+++.|+
T Consensus 250 ~~~~i~~~~~----~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~ 316 (1054)
T 1gku_B 250 TVRNVEDVAV----NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFV 316 (1054)
T ss_dssp CCCCEEEEEE----SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHH
T ss_pred CcCCceEEEe----chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHH
Confidence 3334444444 234556666666653 578999999999999999999988 89999999984 7889999
Q ss_pred ccCCCCCEEEE----ecccccccCC-CC-CEEEEcCCC------------------------------------------
Q 047490 246 NEDGDCPTLVC----TDLAARGLDL-DV-DHVIMFDFP------------------------------------------ 277 (323)
Q Consensus 246 ~~~g~~~ilv~----t~~~~~Gid~-~~-~~vi~~~~p------------------------------------------ 277 (323)
+ |+.+|||| |+++++|+|+ ++ ++||++|.|
T Consensus 317 ~--G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1054)
T 1gku_B 317 E--GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHID 394 (1054)
T ss_dssp H--TSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHH
T ss_pred c--CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9 99999999 8999999999 85 999999999
Q ss_pred -----------------------------CCchhhhhhhcccccCCCcc--eEEEEeeCCcHHHHHHHHHHHHh
Q 047490 278 -----------------------------LNSIDYLHRTGRTARMGAKG--KVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 278 -----------------------------~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+...|.||+||+||.|..| .+++++...|...++.+++.++.
T Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 395 EVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987765 58888888899999999988875
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=277.14 Aligned_cols=285 Identities=19% Similarity=0.305 Sum_probs=182.4
Q ss_pred CccEEEEcCCHHHHHHH-HHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHH------HcCCCCC
Q 047490 17 RPRAVVLCPTRELSEQV-FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI------EDGNMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~------~~~~~~~ 89 (323)
+.++|||+|+++|+.|+ .++++++++. ++++..++|+.........+..+++|+|+||++|.+.+ ....+.+
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~ 134 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQL 134 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceec
Confidence 47899999999999999 9999999875 47899999998776665555567899999999999887 3445678
Q ss_pred CCCcEEeecchhhhhcCC-ChhhHHHHHhh-hcccc----CCCCCCCceEEEEEeecchh-------hHHHHHH---Hhc
Q 047490 90 GDIKYLVLDEADTMFDRG-FGPDIRKFLVP-LKNRA----SKPNGQGFQTVLVSATMTKA-------VQKLVDE---ECQ 153 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~-~~~~~----~~~~~~~~~~i~~sat~~~~-------~~~~~~~---~~~ 153 (323)
.++++||+||||++.... +...+...+.. +.... .......++++++|||+... ....+.. .+.
T Consensus 135 ~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~ 214 (699)
T 4gl2_A 135 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLD 214 (699)
T ss_dssp GGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHT
T ss_pred ccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcC
Confidence 899999999999985433 22222222211 11000 00001234899999999863 1111111 111
Q ss_pred C-ceeeeccc---cccccccceeeEEeccC--------------------------------------------------
Q 047490 154 G-IAHLRTST---LHKKIASARHDFIKLSG-------------------------------------------------- 179 (323)
Q Consensus 154 ~-~~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------------------------------- 179 (323)
. ........ ...........+.....
T Consensus 215 ~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 215 AFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp CSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhh
Confidence 1 00000000 00000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 047490 180 -------------------------------------------------------------------------------- 179 (323)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (323)
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ----ChhHHHHHHHHhccCCC--C-CCeEEEEecCcccHHHHHHHHhhC------CCeeEEecCC--------CCHHHHH
Q 047490 180 ----SENKLEALLQVLEPSLS--K-GNKVMVFCNTLNSSRAVDHFLNEN------QISTVNYHGE--------VPAQERV 238 (323)
Q Consensus 180 ----~~~k~~~l~~~l~~~~~--~-~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~ 238 (323)
...|...|.+.+..... . +.++||||++++.++.+++.|+.. ++.+..+||+ |+..+|.
T Consensus 375 ~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~ 454 (699)
T 4gl2_A 375 NPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQK 454 (699)
T ss_dssp CCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHH
Confidence 01122222233322111 2 689999999999999999999987 8999999999 9999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+++++|++ |+.+|||||+++++|+|+ ++++||+||+|+|...|.||+||+||.| +.++++....
T Consensus 455 ~~~~~F~~--g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 455 EVISKFRT--GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp HHHHHHCC-----CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred HHHHHHhc--CCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 99999999 999999999999999999 9999999999999999999999987664 4444444433
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.6e-33 Score=270.60 Aligned_cols=275 Identities=17% Similarity=0.223 Sum_probs=206.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++||++|+++|+.|+++.+++++. ++++..++|+... ...++|+|+||+++.+.+......++++++|
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lv 151 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFV 151 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEE
Confidence 467899999999999999999999865 5688888887543 2347999999999999988877778899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCce-eeecccccccccccee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIA-HLRTSTLHKKIASARH 172 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 172 (323)
|+||+|++.+++++..+..++..++. +++++++|||+++.. ..++........ .+....... ...+
T Consensus 152 ViDEaH~l~d~~~g~~~e~ii~~l~~--------~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~---pl~~ 220 (997)
T 4a4z_A 152 IFDEVHYVNDQDRGVVWEEVIIMLPQ--------HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPV---PLEI 220 (997)
T ss_dssp EECCTTCCCTTCTTCCHHHHHHHSCT--------TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSS---CEEE
T ss_pred EEECcccccccchHHHHHHHHHhccc--------CCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCc---cceE
Confidence 99999999999999989988887754 349999999997543 333332221111 111111000 0000
Q ss_pred e-------------------------------------------------------------------------------
Q 047490 173 D------------------------------------------------------------------------------- 173 (323)
Q Consensus 173 ~------------------------------------------------------------------------------- 173 (323)
+
T Consensus 221 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~ 300 (997)
T 4a4z_A 221 NIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGS 300 (997)
T ss_dssp EEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------------------------
T ss_pred EEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred -------------EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC-----------------
Q 047490 174 -------------FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI----------------- 223 (323)
Q Consensus 174 -------------~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~----------------- 223 (323)
+........+...+.+.+... ...++||||++++.|+.++..|...++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 378 (997)
T 4a4z_A 301 RGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSI 378 (997)
T ss_dssp ----------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 000011223456666666653 457999999999999999999976544
Q ss_pred ----------------------eeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCC---
Q 047490 224 ----------------------STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL--- 278 (323)
Q Consensus 224 ----------------------~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~--- 278 (323)
++..+||+|++.+|..+++.|++ |.++|||||+++++|+|++...||+++.|+
T Consensus 379 ~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~--G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg 456 (997)
T 4a4z_A 379 TRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK--GFIKVLFATETFAMGLNLPTRTVIFSSIRKHDG 456 (997)
T ss_dssp TTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSCCCCCSEEEESCSEEEET
T ss_pred HhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC--CCCcEEEEchHhhCCCCCCCceEEEeccccccC
Confidence 57899999999999999999999 999999999999999999438888877766
Q ss_pred ------CchhhhhhhcccccCC--CcceEEEEee--CCcHHHHHHH
Q 047490 279 ------NSIDYLHRTGRTARMG--AKGKVTSLVA--KKDVLLADRI 314 (323)
Q Consensus 279 ------s~~~~~Q~~GR~~R~~--~~g~~~~~~~--~~~~~~~~~i 314 (323)
|...|.|++||+||.| ..|.|++++. ..+...++.+
T Consensus 457 ~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 457 NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp TEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9999999999999998 5677888773 3344444443
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-33 Score=259.42 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=204.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~~ 89 (323)
++.++||+||++||.|.++++..+....++++..++||.....+ ....+++|+|+||++| ++++... ...+
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 67899999999999999999999999999999999999764332 2233589999999999 6666553 2557
Q ss_pred CCCcEEeecchhhhh-cCC---------------ChhhHHHHHhhhccc-cCCCCCCCc---------------------
Q 047490 90 GDIKYLVLDEADTMF-DRG---------------FGPDIRKFLVPLKNR-ASKPNGQGF--------------------- 131 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~-~~~---------------~~~~~~~i~~~~~~~-~~~~~~~~~--------------------- 131 (323)
+.+.++|+||||.|+ +.+ +...+..++..++.. ....+....
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 889999999999997 543 334555555555310 000000111
Q ss_pred --------------------------------------------------------------------------------
Q 047490 132 -------------------------------------------------------------------------------- 131 (323)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (323)
T Consensus 282 fsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q 361 (844)
T 1tf5_A 282 FDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQ 361 (844)
T ss_dssp TSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHH
T ss_pred CCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHH
Confidence
Q ss_pred -------eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee-EEeccCChhHHHHHHHHhccCCCCCCeEEE
Q 047490 132 -------QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD-FIKLSGSENKLEALLQVLEPSLSKGNKVMV 203 (323)
Q Consensus 132 -------~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~lv 203 (323)
++.+||+|...+...+.+.+......+ + ...+.....+. ++. .....|...+.+.+......+.++||
T Consensus 362 ~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I--P-tn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLV 437 (844)
T 1tf5_A 362 NYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI--P-TNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLV 437 (844)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC--C-CSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHhhhccCCcccchhHHHHHHHhCCceEEe--c-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 234445554443333322222111111 1 11111111111 222 34567888888887654346789999
Q ss_pred EecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCC---------CCEEEEc
Q 047490 204 FCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD---------VDHVIMF 274 (323)
Q Consensus 204 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~---------~~~vi~~ 274 (323)
||++...++.+++.|+..|+++..+||+++..++..+.+.|+. | .|+|||+.+++|+|+. ..+||+|
T Consensus 438 ft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~ 513 (844)
T 1tf5_A 438 GTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGT 513 (844)
T ss_dssp EESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEES
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--C--eEEEeCCccccCcCccccchhhhcCCcEEEEe
Confidence 9999999999999999999999999999988888766667765 6 4999999999999994 4599999
Q ss_pred CCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 275 DFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 275 ~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+.|.|.+.|.||+||+||.|.+|.+++|++..|.
T Consensus 514 d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 514 ERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999999999999999999998764
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-34 Score=268.68 Aligned_cols=274 Identities=16% Similarity=0.250 Sum_probs=197.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.+++|++||++|+.|+++.+++++...++++..++|+......... + .+.++|+|+||+.+.+ ...+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCC
Confidence 67999999999999999999999998888999999998765543222 2 3458999999987754 3557899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
++||+||+|++... ... .+... ..+.+++++|||+.+...............+ .........+..
T Consensus 492 ~lVVIDEaHr~g~~-----qr~---~l~~~-----~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i--~~~p~~r~~i~~ 556 (780)
T 1gm5_A 492 GLVIIDEQHRFGVK-----QRE---ALMNK-----GKMVDTLVMSATPIPRSMALAFYGDLDVTVI--DEMPPGRKEVQT 556 (780)
T ss_dssp CEEEEESCCCC----------C---CCCSS-----SSCCCEEEEESSCCCHHHHHHHTCCSSCEEE--CCCCSSCCCCEE
T ss_pred ceEEecccchhhHH-----HHH---HHHHh-----CCCCCEEEEeCCCCHHHHHHHHhCCcceeee--eccCCCCcceEE
Confidence 99999999985321 111 11111 1245899999999776544332111111111 111111111111
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCc--------ccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHH
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTL--------NSSRAVDHFLNE---NQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~--------~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~ 241 (323)
.+ . ...+...+.+.+......+++++|||+.. ..++.+++.|++ .+..+..+||+|+..+|+.++
T Consensus 557 ~~---~-~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 557 ML---V-PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp CC---C-CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred EE---e-ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 11 1 12234455555655556788999999976 457888888887 467899999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
++|++ |+.+|||||+++++|+|+ ++++||+++.|. +...+.||+||+||.|+.|.|++++++.+....++++.
T Consensus 633 ~~F~~--G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~~ 707 (780)
T 1gm5_A 633 LEFAE--GRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRF 707 (780)
T ss_dssp HHHTT--TSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHH
T ss_pred HHHHC--CCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHHH
Confidence 99999 999999999999999999 999999999996 78889999999999999999999998545544444433
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.6e-32 Score=267.33 Aligned_cols=264 Identities=18% Similarity=0.276 Sum_probs=200.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+++++|++||++|+.|+.+.+++++...++++..+++.......... + .+.++|+|+||+.+. ....+++
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccc
Confidence 467999999999999999999999988778888888876554433222 2 345899999997653 2456789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+++||+||+|++ +......+..+.. +.+++++|||+.+.........+.....+.... .....+.
T Consensus 726 l~lvIiDEaH~~-----g~~~~~~l~~l~~--------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~ 790 (1151)
T 2eyq_A 726 LGLLIVDEEHRF-----GVRHKERIKAMRA--------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVK 790 (1151)
T ss_dssp EEEEEEESGGGS-----CHHHHHHHHHHHT--------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEE
T ss_pred cceEEEechHhc-----ChHHHHHHHHhcC--------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccE
Confidence 999999999984 4445555555543 238999999998776655544443333222111 1111222
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
. +............+...+ ..+++++|||++.++++.+++.|++. +..+..+||+|+..+|++++++|++ |
T Consensus 791 ~-~~~~~~~~~i~~~il~~l----~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g 863 (1151)
T 2eyq_A 791 T-FVREYDSMVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--Q 863 (1151)
T ss_dssp E-EEEECCHHHHHHHHHHHH----TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--T
T ss_pred E-EEecCCHHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--C
Confidence 2 222222222233333333 35789999999999999999999887 7889999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCC-CCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDF-PLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~-p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+.+|||||+++++|+|+ ++++||+++. +.+..+|.||+||+||.|+.|.|++++...
T Consensus 864 ~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 864 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999 8999999988 568999999999999999999999998764
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.4e-33 Score=278.51 Aligned_cols=285 Identities=15% Similarity=0.212 Sum_probs=202.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC--CCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN--MVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~--~~~~~~ 92 (323)
.++.++||++|+++|++|+.+.+++.+...++++..++|+....... ..+++|+|||||++..++.++. ..++++
T Consensus 132 ~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v 208 (1724)
T 4f92_B 132 VDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLV 208 (1724)
T ss_dssp TTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCc
Confidence 45779999999999999999999999988899999999987654432 2357999999999977766543 237889
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCc----eeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI----AHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 168 (323)
++||+||+|.+.+ +++..++.++.++...... .+.++|+|++|||+++.. .+..++... ..+. .... .+.
T Consensus 209 ~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~-~~~~~riI~LSATl~N~~--dvA~wL~~~~~~~~~~~-~~~~-RPv 282 (1724)
T 4f92_B 209 RLIILDEIHLLHD-DRGPVLEALVARAIRNIEM-TQEDVRLIGLSATLPNYE--DVATFLRVDPAKGLFYF-DNSF-RPV 282 (1724)
T ss_dssp EEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH-HTCCCEEEEEECSCTTHH--HHHHHTTCCHHHHEEEC-CGGG-CSS
T ss_pred CEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh-CCCCCcEEEEecccCCHH--HHHHHhCCCCCCCeEEE-CCCC-ccC
Confidence 9999999998865 5788877776654321100 113569999999997532 122233221 1111 1111 111
Q ss_pred cceeeEEeccCCh--hHHH----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----------------------
Q 047490 169 SARHDFIKLSGSE--NKLE----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---------------------- 220 (323)
Q Consensus 169 ~~~~~~~~~~~~~--~k~~----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------------------- 220 (323)
...+++....... .... .+.+.+.+. ..++++||||++++.|+.+++.|.+
T Consensus 283 pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1724)
T 4f92_B 283 PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVL 361 (1724)
T ss_dssp CEEEECCEECCCCHHHHHHHHHHHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHH
T ss_pred ccEEEEeccCCcchhhhhHHHHHHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHH
Confidence 2233333333221 1112 223333333 2457999999999999998887753
Q ss_pred ---------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEE-----cC-----
Q 047490 221 ---------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIM-----FD----- 275 (323)
Q Consensus 221 ---------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~-----~~----- 275 (323)
...+++.|||+|+..+|..+++.|++ |.++|||||++++.|+|+++..||+ |+
T Consensus 362 ~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~--G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~ 439 (1724)
T 4f92_B 362 RTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD--KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR 439 (1724)
T ss_dssp HHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHT--TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTE
T ss_pred HhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC--CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCC
Confidence 12458899999999999999999999 9999999999999999996666665 33
Q ss_pred -CCCCchhhhhhhcccccCC--CcceEEEEeeCCcHHHH
Q 047490 276 -FPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKDVLLA 311 (323)
Q Consensus 276 -~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~ 311 (323)
.|.+..+|.||+|||||.| ..|.++++....+....
T Consensus 440 ~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 440 WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 2458999999999999988 47899999888765443
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.2e-33 Score=255.27 Aligned_cols=284 Identities=15% Similarity=0.140 Sum_probs=193.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
.+++++||+||++||.|.++.+..++...++++..++||.... .+....+++|+|+||++| ++++.... ..
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~ 191 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERV 191 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhc
Confidence 3678999999999999999999999999999999999997643 223333589999999999 78777653 56
Q ss_pred CCCCcEEeecchhhhh-cCC---------------ChhhHHHHHhhhcccc------------CCCCCCCceEE------
Q 047490 89 YGDIKYLVLDEADTMF-DRG---------------FGPDIRKFLVPLKNRA------------SKPNGQGFQTV------ 134 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~-~~~---------------~~~~~~~i~~~~~~~~------------~~~~~~~~~~i------ 134 (323)
++++.++|+||+|.++ +.+ +...+..++..++... ...+....++.
T Consensus 192 ~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~ 271 (853)
T 2fsf_A 192 QRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGL 271 (853)
T ss_dssp CCSCCEEEESCHHHHTTTTTTCEEEEEEC---------------------------------------------------
T ss_pred ccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHH
Confidence 7899999999999998 432 3345555555554200 00000011211
Q ss_pred ------------------EEEeecch------------------------------------------------------
Q 047490 135 ------------------LVSATMTK------------------------------------------------------ 142 (323)
Q Consensus 135 ------------------~~sat~~~------------------------------------------------------ 142 (323)
++|||.+.
T Consensus 272 ~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaiea 351 (853)
T 2fsf_A 272 VLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 351 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHh
Confidence 56666432
Q ss_pred -------------------------------------hhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHH
Q 047490 143 -------------------------------------AVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185 (323)
Q Consensus 143 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 185 (323)
+...+.+-+... ....+ ...+.....+..........|..
T Consensus 352 ke~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~--vv~IP-tn~p~~R~d~~d~v~~~~~~K~~ 428 (853)
T 2fsf_A 352 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD--TVVVP-TNRPMIRKDLPDLVYMTEAEKIQ 428 (853)
T ss_dssp -----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCE--EEECC-CSSCCCCEECCCEEESSHHHHHH
T ss_pred cccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCc--EEEcC-CCCCceeecCCcEEEeCHHHHHH
Confidence 111111111000 00111 11111111111112234567999
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccC
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid 265 (323)
.+.+.+......+.++||||++...++.+++.|+..|+++..+||++...++..+.+.|+. | .|+|||+.+++|+|
T Consensus 429 al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G--~VtIATnmAgRGtD 504 (853)
T 2fsf_A 429 AIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--A--AVTIATNMAGRGTD 504 (853)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--T--CEEEEESCCSSCSC
T ss_pred HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--C--eEEEecccccCCcC
Confidence 9998886544567899999999999999999999999999999999988888888899998 7 49999999999999
Q ss_pred C-CC-------------------------------------CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 266 L-DV-------------------------------------DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 266 ~-~~-------------------------------------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
+ .. .+||+++.|.|.+.|.||+||+||.|.+|.++.|++..|
T Consensus 505 I~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 505 IVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp CCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 9 53 599999999999999999999999999999999999876
Q ss_pred H
Q 047490 308 V 308 (323)
Q Consensus 308 ~ 308 (323)
.
T Consensus 585 ~ 585 (853)
T 2fsf_A 585 A 585 (853)
T ss_dssp G
T ss_pred H
Confidence 4
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.6e-33 Score=255.99 Aligned_cols=267 Identities=15% Similarity=0.207 Sum_probs=189.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
++++|||+|+++|+.|+.+.++++....+..+..++++.....+ ...+++|+|+||+.+.. .....++++++||
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liI 230 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMM 230 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEE
Confidence 45999999999999999999999966556788888888665443 44567999999997653 2334577899999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH-HHhcCceeeecccccc----cccc--
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD-EECQGIAHLRTSTLHK----KIAS-- 169 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~-- 169 (323)
+||+|++.. ..+..++..+.. ..+++++||||++....... ..+..+.......... ....
T Consensus 231 iDE~H~~~~----~~~~~il~~~~~--------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 231 NDECHLATG----KSISSIISGLNN--------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp EETGGGCCH----HHHHHHGGGCTT--------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCE
T ss_pred EECCcCCCc----ccHHHHHHhccc--------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCce
Confidence 999998754 456666655532 23899999999766433221 1111221111111000 0000
Q ss_pred ceeeEE--------------------eccCChhHHHHHHHHhccCCCC-CCeEEEEecCcccHHHHHHHHhhCCCeeEEe
Q 047490 170 ARHDFI--------------------KLSGSENKLEALLQVLEPSLSK-GNKVMVFCNTLNSSRAVDHFLNENQISTVNY 228 (323)
Q Consensus 170 ~~~~~~--------------------~~~~~~~k~~~l~~~l~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 228 (323)
...... .......+...+.+.+...... +.+++|||+ .++++.+++.|++.+..+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~ 377 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYV 377 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEE
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEE
Confidence 000000 1111223444455555543333 445566666 889999999999988899999
Q ss_pred cCCCCHHHHHHHHHhccccCCCCCEEEEe-cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEee
Q 047490 229 HGEVPAQERVENLNKFKNEDGDCPTLVCT-DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 229 ~~~~~~~~r~~~~~~f~~~~g~~~ilv~t-~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
||+++..+|+++++.|++ |+.+||||| +++++|+|+ ++++||++++|+|...|.|++||+||.|+.+.++.+++
T Consensus 378 ~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 378 SGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999 999999999 999999999 99999999999999999999999999998764344433
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-32 Score=274.05 Aligned_cols=297 Identities=16% Similarity=0.188 Sum_probs=206.7
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+|+..+.+.++.+++|++|+++|+.|..+.+++.+ ...++++..++|+...+.. ...+++|+|+|||++..++.++
T Consensus 962 ail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc
Confidence 45555556667899999999999999999998754 4568899999988654322 2234799999999998877764
Q ss_pred C--CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeecc
Q 047490 86 N--MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 86 ~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~ 161 (323)
. ..++++++||+||+|.+.+ ..+..+..++..+...... ...++|+|++|||+++. ..+++.........+.
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~-~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~-- 1114 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQ-IERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFH-- 1114 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHT-TSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECC--
T ss_pred ccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhh-cCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeC--
Confidence 3 3367899999999998876 4778777777666432211 12356999999999753 2333211111111111
Q ss_pred ccccccccceeeEEeccCCh--hHHH----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---------------
Q 047490 162 TLHKKIASARHDFIKLSGSE--NKLE----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE--------------- 220 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~k~~----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~--------------- 220 (323)
..........++....... .+.. .+...+... ..++++||||++++.++.++..|..
T Consensus 1115 -~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~ 1192 (1724)
T 4f92_B 1115 -PNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCT 1192 (1724)
T ss_dssp -GGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSC
T ss_pred -CCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhccc
Confidence 1111112222222222211 1111 122223222 3567999999999999988766532
Q ss_pred -------------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcC------
Q 047490 221 -------------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFD------ 275 (323)
Q Consensus 221 -------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~------ 275 (323)
...+++.+||+|++.+|..+++.|++ |.++|||||++++.|+|+++..||+.+
T Consensus 1193 ~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~--G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg 1270 (1724)
T 4f92_B 1193 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNG 1270 (1724)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH--TSBCEEEEEGGGSSSCCCCBSEEEEECSEEEET
T ss_pred HHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC--CCCeEEEEChHHHcCCCCCccEEEEecCccccC
Confidence 02368899999999999999999999 999999999999999999766666633
Q ss_pred -----CCCCchhhhhhhcccccCCC--cceEEEEeeCCcHHHHHHH
Q 047490 276 -----FPLNSIDYLHRTGRTARMGA--KGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 276 -----~p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~i 314 (323)
.|.+..+|.||+||+||.|. .|.+++++...+....+++
T Consensus 1271 ~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1271 KIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred cccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 25688999999999999995 7999999988777655443
No 41
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.8e-32 Score=248.17 Aligned_cols=283 Identities=15% Similarity=0.166 Sum_probs=206.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~~ 89 (323)
+..++||+||++||.|.++++..+....++++..++|+.....+ ....+++|+|+||+.| ++++..+ ...+
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 56899999999999999999999999999999999999764332 2233579999999999 7777664 3567
Q ss_pred CCCcEEeecchhhhh-cC---------------CChhhHHHHHhhhccc-cCCCCCCCceEE-----------------E
Q 047490 90 GDIKYLVLDEADTMF-DR---------------GFGPDIRKFLVPLKNR-ASKPNGQGFQTV-----------------L 135 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~-~~---------------~~~~~~~~i~~~~~~~-~~~~~~~~~~~i-----------------~ 135 (323)
+.+.++|+||+|.|+ +. ++...+..++..++.. ....+....++. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 889999999999998 32 2445677777766410 000000122455 5
Q ss_pred EEeecchhhH----------------------------------------------------------------------
Q 047490 136 VSATMTKAVQ---------------------------------------------------------------------- 145 (323)
Q Consensus 136 ~sat~~~~~~---------------------------------------------------------------------- 145 (323)
+|||.+.-..
T Consensus 310 fsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Q 389 (922)
T 1nkt_A 310 YEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQ 389 (922)
T ss_dssp TCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehH
Confidence 5666543111
Q ss_pred ---------------------HHHHHHhcCceeeecccccccccccee-eEEeccCChhHHHHHHHHhccCCCCCCeEEE
Q 047490 146 ---------------------KLVDEECQGIAHLRTSTLHKKIASARH-DFIKLSGSENKLEALLQVLEPSLSKGNKVMV 203 (323)
Q Consensus 146 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lv 203 (323)
.+.+-+...... .+ ...+.....+ .++. .....|...+.+.+......+.|+||
T Consensus 390 nyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IP-tn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLV 465 (922)
T 1nkt_A 390 NYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS--IP-TNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLI 465 (922)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE--CC-CSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhhhhhhccccCchhHHHHHHHHhCCCeEE--eC-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 111111000000 00 0000000111 1222 23567888888888664456789999
Q ss_pred EecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CC--------------
Q 047490 204 FCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DV-------------- 268 (323)
Q Consensus 204 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~-------------- 268 (323)
||++...++.+++.|+..|+++..+||++...++..+.+.|+. | .|+|||+.+++|+|+ ..
T Consensus 466 ft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 466 GTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--C--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999887787778888887 7 499999999999999 54
Q ss_pred --------------------------------------CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 269 --------------------------------------DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 269 --------------------------------------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.+||+++.|.|.+.|.|++||+||.|.+|.++.|++..|.-
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999987763
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=1e-31 Score=241.76 Aligned_cols=251 Identities=16% Similarity=0.201 Sum_probs=179.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcccccee-EEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFR-STMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++|||+|+++|+.||.++++++ +++ +..++|+... ..+|+|+||+.+...+.. ..+++++|
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~li 196 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLL 196 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEE
Confidence 578999999999999999999994 556 7777776432 368999999998776542 12469999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhc-----------------Cce
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQ-----------------GIA 156 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~-----------------~~~ 156 (323)
|+||+|++.+..+.. ++..+.. .+++++||||.+.. ...+..... .+.
T Consensus 197 IvDEaH~~~~~~~~~----~~~~~~~---------~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~ 263 (472)
T 2fwr_A 197 IFDEVHHLPAESYVQ----IAQMSIA---------PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYT 263 (472)
T ss_dssp EEETGGGTTSTTTHH----HHHTCCC---------SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEE
T ss_pred EEECCcCCCChHHHH----HHHhcCC---------CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeE
Confidence 999999998765543 4443332 28999999997321 001111111 110
Q ss_pred eeec--ccccc------------------------ccccceeeEE--------------------eccCChhHHHHHHHH
Q 047490 157 HLRT--STLHK------------------------KIASARHDFI--------------------KLSGSENKLEALLQV 190 (323)
Q Consensus 157 ~~~~--~~~~~------------------------~~~~~~~~~~--------------------~~~~~~~k~~~l~~~ 190 (323)
.... ..... ........+. .......|...+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 343 (472)
T 2fwr_A 264 IKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREI 343 (472)
T ss_dssp ECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 0000 00000 0000000000 001234577778888
Q ss_pred hccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC
Q 047490 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 191 l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~ 269 (323)
+.. ..++++||||++...++.+++.|. +..+||+++..+|++++++|++ |+.+|||||+++++|+|+ +++
T Consensus 344 l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~--g~~~vLv~T~~~~~Gldlp~~~ 414 (472)
T 2fwr_A 344 LER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT--GRFRAIVSSQVLDEGIDVPDAN 414 (472)
T ss_dssp HHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH--SSCSBCBCSSCCCSSSCSCCBS
T ss_pred HHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC--CCCCEEEEcCchhcCcccccCc
Confidence 876 367899999999999999999884 5679999999999999999999 999999999999999999 999
Q ss_pred EEEEcCCCCCchhhhhhhcccccCCCc-c--eEEEEeeC
Q 047490 270 HVIMFDFPLNSIDYLHRTGRTARMGAK-G--KVTSLVAK 305 (323)
Q Consensus 270 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~-g--~~~~~~~~ 305 (323)
+||++++|+|...|.|++||+||.|+. + .++.+++.
T Consensus 415 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 415 VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp EEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 999999999999999999999999854 3 34445554
No 43
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=1.7e-31 Score=243.02 Aligned_cols=241 Identities=19% Similarity=0.207 Sum_probs=172.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||++||++|+.|+++.+.+.. +..+....|+.. ...+++|+|+||++| +.+..+.+++++++|
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lV 323 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIII 323 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEE
Confidence 5699999999999999999887765 334555555532 345679999999997 355667788999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||+|.+ +.++...+..++..+.... ...++++|||+++.... ..+..... ..........
T Consensus 324 lDEAH~l-~~~~~~~l~~Il~~l~~~~------~~llil~SAT~~~~i~~------~~p~i~~v---~~~~~~~i~~--- 384 (666)
T 3o8b_A 324 CDECHST-DSTTILGIGTVLDQAETAG------ARLVVLATATPPGSVTV------PHPNIEEV---ALSNTGEIPF--- 384 (666)
T ss_dssp ETTTTCC-SHHHHHHHHHHHHHTTTTT------CSEEEEEESSCTTCCCC------CCTTEEEE---ECBSCSSEEE---
T ss_pred Eccchhc-CccHHHHHHHHHHhhhhcC------CceEEEECCCCCccccc------CCcceEEE---eecccchhHH---
Confidence 9999865 3345555666666654332 11377889999874210 00000000 0000000000
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
.. .... +. ...++++||||++++.++.+++.|++.++.+..+||+|++.+ |.+ +..+||||
T Consensus 385 ~~-~~~~-------l~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~~VLVA 445 (666)
T 3o8b_A 385 YG-KAIP-------IE--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGDVVVVA 445 (666)
T ss_dssp TT-EEEC-------GG--GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSCEEEEE
T ss_pred HH-hhhh-------hh--hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCCcEEEE
Confidence 00 0000 11 125689999999999999999999999999999999999764 444 56699999
Q ss_pred ecccccccCCCCCEEE----------EcC-----------CCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 257 TDLAARGLDLDVDHVI----------MFD-----------FPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 257 t~~~~~Gid~~~~~vi----------~~~-----------~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
|+++++|+|+++++|| +|| .|.+...|.||+||+|| |+.|. +.|+++.|...
T Consensus 446 TdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 446 TDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 9999999999999888 566 89999999999999999 89999 99998776543
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=6.3e-33 Score=246.05 Aligned_cols=248 Identities=15% Similarity=0.137 Sum_probs=163.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH---------HHHHHcCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI---------LQHIEDGN 86 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l---------~~~~~~~~ 86 (323)
++++++|++||++|+.|+++.++.+. +....+.. . .++||+.+ ...+. ..
T Consensus 36 ~~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~------~--------~v~Tp~~l~~~l~~~~l~~~~~-~~ 94 (440)
T 1yks_A 36 RRLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAF------S--------AHGSGREVIDAMCHATLTYRML-EP 94 (440)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCC------C--------CCCCSSCCEEEEEHHHHHHHHT-SS
T ss_pred cCCeEEEEcchHHHHHHHHHHHhcCC------eEEecccc------e--------eccCCccceeeecccchhHhhh-Cc
Confidence 36799999999999999999887542 22111110 0 24455443 22222 23
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK 166 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+++++++|+||+|++ +.++...+..+...... .+.++++||||+++....+... . ..
T Consensus 95 ~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~-------~~~~~l~~SAT~~~~~~~~~~~----~---------~~ 153 (440)
T 1yks_A 95 TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA-------NESATILMTATPPGTSDEFPHS----N---------GE 153 (440)
T ss_dssp SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSCCC----S---------SC
T ss_pred ccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-------CCceEEEEeCCCCchhhhhhhc----C---------CC
Confidence 45789999999999987 22222222222222211 2359999999998765421110 0 00
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.......+. . ....++..+.+ .++++||||++++.++.+++.|+..+..+..+|| .+|.++++.|++
T Consensus 154 ---~~~~~~~~~~-~-~~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~ 221 (440)
T 1yks_A 154 ---IEDVQTDIPS-E-PWNTGHDWILA---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ 221 (440)
T ss_dssp ---EEEEECCCCS-S-CCSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------
T ss_pred ---eeEeeeccCh-H-HHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC
Confidence 0000000111 1 01111122222 3679999999999999999999999999999999 368899999999
Q ss_pred cCCCCCEEEEecccccccCCCCCEEEE-------------------cCCCCCchhhhhhhcccccC-CCcceEEEEe---
Q 047490 247 EDGDCPTLVCTDLAARGLDLDVDHVIM-------------------FDFPLNSIDYLHRTGRTARM-GAKGKVTSLV--- 303 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~~~~~vi~-------------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~~~~~--- 303 (323)
|+.+|||||+++++|+|+++++||+ ++.|.+..+|.||+||+||. |..|.|++++
T Consensus 222 --g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~ 299 (440)
T 1yks_A 222 --KKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPT 299 (440)
T ss_dssp --CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred --CCceEEEECChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccC
Confidence 9999999999999999999988886 88899999999999999998 6899999996
Q ss_pred eCCcHHHHHHHHHHHH
Q 047490 304 AKKDVLLADRIEEAIR 319 (323)
Q Consensus 304 ~~~~~~~~~~i~~~l~ 319 (323)
++.+...++.+++.+.
T Consensus 300 ~~~~~~~l~~l~~~~~ 315 (440)
T 1yks_A 300 SENNAHHVCWLEASML 315 (440)
T ss_dssp CCCCTTBHHHHHHHHH
T ss_pred ChhhhhhhhhhhHHhc
Confidence 6777778888877663
No 45
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=2.4e-30 Score=234.48 Aligned_cols=268 Identities=18% Similarity=0.281 Sum_probs=184.1
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+..++||||| .+|+.||.++++++.+. .++..++|+... ....+++|+|+||+.+.+... +....++
T Consensus 83 ~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~ 151 (500)
T 1z63_A 83 ENELTPSLVICP-LSVLKNWEEELSKFAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWK 151 (500)
T ss_dssp TTCCSSEEEEEC-STTHHHHHHHHHHHCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEE
T ss_pred cCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcC
Confidence 445678999999 56999999999999863 466666665422 122346899999999865433 2345789
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh-HHH-------------------------
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV-QKL------------------------- 147 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~-~~~------------------------- 147 (323)
+||+||||++.+.. ......+..+... +.+++||||.... .+.
T Consensus 152 ~vIvDEaH~~kn~~--~~~~~~l~~l~~~---------~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~ 220 (500)
T 1z63_A 152 YIVIDEAQNIKNPQ--TKIFKAVKELKSK---------YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATP 220 (500)
T ss_dssp EEEEETGGGGSCTT--SHHHHHHHTSCEE---------EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHH
T ss_pred EEEEeCccccCCHh--HHHHHHHHhhccC---------cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccc
Confidence 99999999986543 3344445444332 7899999995431 111
Q ss_pred -----------HHHHhcCceeeecccc----ccccccceeeEEecc----------------------------------
Q 047490 148 -----------VDEECQGIAHLRTSTL----HKKIASARHDFIKLS---------------------------------- 178 (323)
Q Consensus 148 -----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------------------------- 178 (323)
+...+.. ..++.... ....+........+.
T Consensus 221 ~~~~~~~~~~~l~~~l~~-~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (500)
T 1z63_A 221 IKKGDNMAKEELKAIISP-FILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILS 299 (500)
T ss_dssp HHTTCHHHHHHHHHHHTT-TEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhh-HeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 1111111 11110000 001111111111111
Q ss_pred ----------------------CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHH
Q 047490 179 ----------------------GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQ 235 (323)
Q Consensus 179 ----------------------~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~ 235 (323)
....|...+.+++.+....+.++||||++...++.+.+.|... +..+..+||+++..
T Consensus 300 ~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~ 379 (500)
T 1z63_A 300 TLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKK 379 (500)
T ss_dssp HHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHH
T ss_pred HHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHH
Confidence 1235666777777766667889999999999999999999875 88999999999999
Q ss_pred HHHHHHHhccccCC-CCC-EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceE--EEEeeCC
Q 047490 236 ERVENLNKFKNEDG-DCP-TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV--TSLVAKK 306 (323)
Q Consensus 236 ~r~~~~~~f~~~~g-~~~-ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 306 (323)
+|.+++++|++ + ..+ +|++|+++++|+|+ .+++||++++|+|+..|.|++||++|.|+.+.+ +.++...
T Consensus 380 ~R~~~~~~F~~--~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 380 ERDDIISKFQN--NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp HHHHHHHHHHH--CTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHHHHHHHhcC--CCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999998 5 344 79999999999999 999999999999999999999999999976654 4455544
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=3e-31 Score=243.28 Aligned_cols=258 Identities=14% Similarity=0.140 Sum_probs=185.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++|||+||++|+.|+.+.++.. .+. ..+.. . ......+..+.++|.+.+.+.+... ..+++++++
T Consensus 214 ~~~~vLvl~PtreLa~Qi~~~l~~~------~v~-~~~~~-l---~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~i 281 (618)
T 2whx_A 214 RRLRTLILAPTRVVAAEMEEALRGL------PIR-YQTPA-V---KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLI 281 (618)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS------CEE-ECCTT-S---SCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEE
T ss_pred CCCeEEEEcChHHHHHHHHHHhcCC------cee-Eeccc-c---eeccCCCceEEEEChHHHHHHHhcc-ccccCCeEE
Confidence 4689999999999999999888632 232 11111 0 0111223467788888887665543 458899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||||++ +.++...+..+...+.. .+.|++++|||+++....+.. .....+.... .
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~-------~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~---~--------- 338 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEM-------GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER---E--------- 338 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHH-------TSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---C---------
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcc-------cCccEEEEECCCchhhhhhhc---cCCceeeecc---c---------
Confidence 99999997 43455566666655532 134999999999876542111 0110000000 0
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
.+. .+...++..+.+ .++++||||++++.++.+++.|+..+..+..+||+ +|.+++++|++ |+.+|||
T Consensus 339 -~~~--~~~~~ll~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~--g~~~VLV 406 (618)
T 2whx_A 339 -IPE--RSWNTGFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL--TDWDFVV 406 (618)
T ss_dssp -CCS--SCCSSSCHHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH--SCCSEEE
T ss_pred -CCH--HHHHHHHHHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC--CCcEEEE
Confidence 000 011122222322 35799999999999999999999999999999984 78889999999 9999999
Q ss_pred EecccccccCCCCCEE--------------------EEcCCCCCchhhhhhhcccccCCC-cceEEEEee---CCcHHHH
Q 047490 256 CTDLAARGLDLDVDHV--------------------IMFDFPLNSIDYLHRTGRTARMGA-KGKVTSLVA---KKDVLLA 311 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~v--------------------i~~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~---~~~~~~~ 311 (323)
||+++++|+|+++++| |+++.|.+..+|.||+||+||.|. .|.++++++ ..|...+
T Consensus 407 aTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l 486 (618)
T 2whx_A 407 TTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHA 486 (618)
T ss_dssp ECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCH
T ss_pred ECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHH
Confidence 9999999999998888 667779999999999999999974 899999998 7788888
Q ss_pred HHHHHHHHh
Q 047490 312 DRIEEAIRK 320 (323)
Q Consensus 312 ~~i~~~l~~ 320 (323)
+.+++.+..
T Consensus 487 ~~le~~i~l 495 (618)
T 2whx_A 487 HWTEAKMLL 495 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHhcc
Confidence 888876643
No 47
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=1.1e-30 Score=232.75 Aligned_cols=242 Identities=14% Similarity=0.151 Sum_probs=168.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++||++||++|+.|+.+.+..+ .+........ .....+..|.++|++.+.+.+... ..++++++|
T Consensus 47 ~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~-----~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~i 114 (451)
T 2jlq_A 47 RRLRTLILAPTRVVAAEMEEALRGL------PIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLI 114 (451)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS------CEEECCTTCS-----CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEE
T ss_pred cCCcEEEECCCHHHHHHHHHHhcCc------eeeeeecccc-----ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEE
Confidence 4689999999999999999988532 2222111110 012334579999999998777654 557899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++ +..+......+..... ..+.+++++|||+++...... .......... ...+ ...+
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~---~~~p--~~~~- 177 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVE-------MGEAAAIFMTATPPGSTDPFP---QSNSPIEDIE---REIP--ERSW- 177 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHH-------TTSCEEEEECSSCTTCCCSSC---CCSSCEEEEE---CCCC--SSCC-
T ss_pred EEeCCccC-CcchHHHHHHHHHhhc-------CCCceEEEEccCCCccchhhh---cCCCceEecC---ccCC--chhh-
Confidence 99999976 2111222222211111 123599999999986543221 1111111100 0000 0001
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
. .+.+.+.. .++++||||++++.++.+++.|+..+..+..+||++. +.+++.|++ |+.+|||
T Consensus 178 -----~----~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~--g~~~vLV 239 (451)
T 2jlq_A 178 -----N----TGFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKL--TDWDFVV 239 (451)
T ss_dssp -----S----SSCHHHHH---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGS--SCCSEEE
T ss_pred -----H----HHHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhcc--CCceEEE
Confidence 0 01122222 3569999999999999999999999999999999753 678999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcC--------------------CCCCchhhhhhhcccccCCC-cceEEEEeeC
Q 047490 256 CTDLAARGLDL-DVDHVIMFD--------------------FPLNSIDYLHRTGRTARMGA-KGKVTSLVAK 305 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~--------------------~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~ 305 (323)
||+++++|+|+ + ++||++| .|.|...|.||+||+||.|. .|.++++...
T Consensus 240 aT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 240 TTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999 7 9999999 99999999999999999997 8888888754
No 48
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=1e-30 Score=251.48 Aligned_cols=137 Identities=22% Similarity=0.394 Sum_probs=119.5
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHhccccCCC--CCEEEE
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGD--CPTLVC 256 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~--~~ilv~ 256 (323)
...|...+.+++.. ..+.++||||++...++.+++.|++ .++.+..+||+|+..+|..++++|++ |+ ++||||
T Consensus 487 ~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~--g~~~~~vLva 562 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAE--EDTGAQVLLC 562 (968)
T ss_dssp TSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHS--TTSSCEEEEC
T ss_pred ccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC--CCCcccEEEe
Confidence 34588888888876 3678999999999999999999985 59999999999999999999999999 76 999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+++++|+|+ ++++||++++|+++..|.|++||+||.|+.|.++++....+....+.+.+.+.+
T Consensus 563 T~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp SCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred cchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999999998877766655555555566665543
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=1.7e-30 Score=244.02 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=185.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.+.+... ..+....|..... ......+.+|+++||+.+.+.+... ..+.++++||
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~---~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMD---VKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTT---CCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHHhC---Cchhheecceecc--ccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 66899999999999999988766542 2222222211111 1112345789999999998877654 4588999999
Q ss_pred ecchhh-hhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 97 LDEADT-MFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 97 iDE~h~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
+||+|. .++. +....++..+.... .+.+++++|||++.. .+..++.....+..... ...+..+|.
T Consensus 214 lDEah~R~ld~---d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr---~~pv~~~~~ 279 (773)
T 2xau_A 214 LDEAHERTLAT---DILMGLLKQVVKRR-----PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGR---TYPVELYYT 279 (773)
T ss_dssp ECSGGGCCHHH---HHHHHHHHHHHHHC-----TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCC---CCCEEEECC
T ss_pred ecCccccccch---HHHHHHHHHHHHhC-----CCceEEEEeccccHH---HHHHHhcCCCcccccCc---ccceEEEEe
Confidence 999995 3331 11122222222221 134999999999643 22334433322222211 122333333
Q ss_pred eccCChhHHH----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-----------CCCeeEEecCCCCHHHHHHH
Q 047490 176 KLSGSENKLE----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-----------NQISTVNYHGEVPAQERVEN 240 (323)
Q Consensus 176 ~~~~~~~k~~----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~ 240 (323)
... ..+... .+.+.... ..++++||||+++++++.+++.|++ .+..+..+||+|+..+|..+
T Consensus 280 ~~~-~~~~~~~~l~~l~~~~~~--~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 280 PEF-QRDYLDSAIRTVLQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp SSC-CSCHHHHHHHHHHHHHHH--SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred cCC-chhHHHHHHHHHHHHHHh--cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 322 233333 33333322 2468999999999999999999875 57789999999999999999
Q ss_pred HHhcc-----ccCCCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCc
Q 047490 241 LNKFK-----NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAK 296 (323)
Q Consensus 241 ~~~f~-----~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~ 296 (323)
++.|. + |..+|||||+++++|+|+ ++++||++|. |.|...|.||+||+||. ..
T Consensus 357 ~~~f~~~~~~~--g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~ 433 (773)
T 2xau_A 357 FEPAPESHNGR--PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RP 433 (773)
T ss_dssp GSCCCCCSSSS--CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SS
T ss_pred HhhcccccCCC--CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CC
Confidence 99999 7 999999999999999999 9999999887 88999999999999999 79
Q ss_pred ceEEEEeeCCcH
Q 047490 297 GKVTSLVAKKDV 308 (323)
Q Consensus 297 g~~~~~~~~~~~ 308 (323)
|.|+.+++..+.
T Consensus 434 G~~~~l~~~~~~ 445 (773)
T 2xau_A 434 GKCFRLYTEEAF 445 (773)
T ss_dssp EEEEESSCHHHH
T ss_pred CEEEEEecHHHh
Confidence 999999986544
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=6.5e-30 Score=226.30 Aligned_cols=241 Identities=11% Similarity=0.167 Sum_probs=162.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++++++|++||++|+.|+.+.++ +..+....++... ....+..+.+.|.+.+.+.+.. ...++++++|
T Consensus 30 ~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~v 97 (431)
T 2v6i_A 30 KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLY 97 (431)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEE
T ss_pred CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEE
Confidence 46799999999999999988775 3344444443111 1112235677888888776665 4568899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++ +..+.. ....+..+.. ..+.+++++|||+++....+.. . .. .+.....
T Consensus 98 ViDEaH~~-~~~~~~-~~~~l~~~~~------~~~~~~l~~SAT~~~~~~~~~~----~---------~~---~i~~~~~ 153 (431)
T 2v6i_A 98 IMDEAHFL-DPASVA-ARGYIETRVS------MGDAGAIFMTATPPGTTEAFPP----S---------NS---PIIDEET 153 (431)
T ss_dssp EEESTTCC-SHHHHH-HHHHHHHHHH------TTSCEEEEEESSCTTCCCSSCC----C---------SS---CCEEEEC
T ss_pred EEeCCccC-CccHHH-HHHHHHHHhh------CCCCcEEEEeCCCCcchhhhcC----C---------CC---ceeeccc
Confidence 99999986 211122 2222222211 0235999999999874321100 0 00 0000000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
..+ ..+...+.+.+.+ .++++||||++++.++.+++.|++.+..+..+||+ +|++++++|++ |+.+|||
T Consensus 154 ~~~--~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~--g~~~vLV 222 (431)
T 2v6i_A 154 RIP--DKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS--EKWDFVI 222 (431)
T ss_dssp CCC--SSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH--SCCSEEE
T ss_pred cCC--HHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC--CCCeEEE
Confidence 001 1111222233333 35689999999999999999999999999999997 67889999999 9999999
Q ss_pred EecccccccCCCCCE-----------------EEEcCCCCCchhhhhhhcccccCCC-cceEEEEe
Q 047490 256 CTDLAARGLDLDVDH-----------------VIMFDFPLNSIDYLHRTGRTARMGA-KGKVTSLV 303 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~-----------------vi~~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~ 303 (323)
||+++++|+|+++.+ ||+++.|.+..+|.||+||+||.|. .|.++++.
T Consensus 223 aT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 223 TTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999996655 5777889999999999999999985 44555554
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=5e-29 Score=229.36 Aligned_cols=246 Identities=20% Similarity=0.292 Sum_probs=178.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
+..+|++||++|+.|+++.+++. ++.+..++|+...... .-....+++++|++.+. ..+.++++|+
T Consensus 180 ~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVI 245 (677)
T 3rc3_A 180 KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVI 245 (677)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEE
T ss_pred CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEE
Confidence 34599999999999999999886 5678888887543110 00112579999986442 2467899999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||+|++.+.+++..+..++..+... +++++++|||.+ ........ ......+..... . ....+ .
T Consensus 246 DEaH~l~d~~~g~~~~~~l~~l~~~-------~i~il~~SAT~~-~i~~l~~~-~~~~~~v~~~~r--~---~~l~~--~ 309 (677)
T 3rc3_A 246 DEIQMIRDPARGWAWTRALLGLCAE-------EVHLCGEPAAID-LVMELMYT-TGEEVEVRDYKR--L---TPISV--L 309 (677)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHCCEE-------EEEEEECGGGHH-HHHHHHHH-HTCCEEEEECCC--S---SCEEE--C
T ss_pred ecceecCCccchHHHHHHHHccCcc-------ceEEEeccchHH-HHHHHHHh-cCCceEEEEeee--c---chHHH--H
Confidence 9999999888998888888877631 358999999842 22222222 222222111100 0 00000 0
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
... +..+.. .....+|||++++.++.+++.|++.+..+..+||+|++.+|..+++.|+.++|..+|||||
T Consensus 310 ~~~-------l~~l~~---~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT 379 (677)
T 3rc3_A 310 DHA-------LESLDN---LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT 379 (677)
T ss_dssp SSC-------CCSGGG---CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC
T ss_pred HHH-------HHHHHh---cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC
Confidence 000 001111 1234588999999999999999999999999999999999999999999755789999999
Q ss_pred cccccccCCCCCEEEEcCC--------------CCCchhhhhhhcccccCCCc---ceEEEEe
Q 047490 258 DLAARGLDLDVDHVIMFDF--------------PLNSIDYLHRTGRTARMGAK---GKVTSLV 303 (323)
Q Consensus 258 ~~~~~Gid~~~~~vi~~~~--------------p~s~~~~~Q~~GR~~R~~~~---g~~~~~~ 303 (323)
+++++|+|+++++||+++. |.|..+|.||+||+||.|.. |.|+.+.
T Consensus 380 di~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 380 DAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp GGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred cHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 9999999999999999998 77999999999999999964 5555544
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=4.6e-30 Score=236.90 Aligned_cols=254 Identities=14% Similarity=0.179 Sum_probs=152.2
Q ss_pred CCccEEEEcCCHHHHHHHH-HHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc----CCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVF-RVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED----GNMVYG 90 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~----~~~~~~ 90 (323)
+++++|||+|+++|+.|+. +.++.+.. .+..+.++ ....+.+|+|+||++|...... ..+...
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 301 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQD 301 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCC
Confidence 6789999999999999998 77776643 33333322 2234579999999999876542 123456
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc---cccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL---HKKI 167 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 167 (323)
.+++||+||||++.... ...+..++..+... +++++||||...........+..+........ ....
T Consensus 302 ~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~---------~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l 371 (590)
T 3h1t_A 302 FFDLIIIDECHRGSARD-NSNWREILEYFEPA---------FQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFL 371 (590)
T ss_dssp SCSEEEESCCC----------CHHHHHHSTTS---------EEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSS
T ss_pred ccCEEEEECCccccccc-hHHHHHHHHhCCcc---------eEEEeccccccccchhHHHHcCCceEecCHHHHhhCCcc
Confidence 79999999999986532 24456666665432 79999999986544333333322211100000 0000
Q ss_pred ccceeeEEec---------------------------cCC-------hhHHHH----HHHHhccCCCCCCeEEEEecCcc
Q 047490 168 ASARHDFIKL---------------------------SGS-------ENKLEA----LLQVLEPSLSKGNKVMVFCNTLN 209 (323)
Q Consensus 168 ~~~~~~~~~~---------------------------~~~-------~~k~~~----l~~~l~~~~~~~~~~lvf~~~~~ 209 (323)
.......... ... ..+... +.+.+... +.++++||||+++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~ 450 (590)
T 3h1t_A 372 APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQE 450 (590)
T ss_dssp CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHH
T ss_pred CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHH
Confidence 0000000000 000 011122 32333322 45689999999999
Q ss_pred cHHHHHHHHhhCCC--------eeEEecCCCCHHHHHHHHHhccccCCCCC---EEEEecccccccCC-CCCEEEEcCCC
Q 047490 210 SSRAVDHFLNENQI--------STVNYHGEVPAQERVENLNKFKNEDGDCP---TLVCTDLAARGLDL-DVDHVIMFDFP 277 (323)
Q Consensus 210 ~~~~l~~~l~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~~~g~~~---ilv~t~~~~~Gid~-~~~~vi~~~~p 277 (323)
+|+.+++.|++.+. .+..+||.++. +|++++++|++ |+.+ |++||+++++|+|+ ++++||++++|
T Consensus 451 ~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~--~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 451 HADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQE--LETSTPVILTTSQLLTTGVDAPTCKNVVLARVV 527 (590)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHC--TTCCCCCEEEESSTTTTTCCCTTEEEEEEESCC
T ss_pred HHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhC--CCCCCCEEEEECChhhcCccchheeEEEEEecC
Confidence 99999999976543 26778998763 79999999998 6544 78888999999999 99999999999
Q ss_pred CCchhhhhhhcccccCCC
Q 047490 278 LNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 278 ~s~~~~~Q~~GR~~R~~~ 295 (323)
+|...|.|++||+||.+.
T Consensus 528 ~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 528 NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CCHHHHHHHHTTSCCCBG
T ss_pred CChHHHHHHHhhhcccCc
Confidence 999999999999999874
No 53
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=1.6e-29 Score=233.31 Aligned_cols=256 Identities=16% Similarity=0.198 Sum_probs=172.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++++++|++||++|+.|+.+.++.+. +. ...+.. ......+.-+-+.+.+.+.+.+... ..+++++++
T Consensus 269 ~~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l-----~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lv 336 (673)
T 2wv9_A 269 KRLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAV-----QREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLF 336 (673)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEE
T ss_pred CCCcEEEEccHHHHHHHHHHHHhcCC----ee--eecccc-----cccCCHHHHHHHHHhhhhHHHHhcc-cccccceEE
Confidence 46899999999999999999887652 11 111000 0011111234445555555444443 468899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++. ..+......+...+.. .+.++++||||+++....+.. . .. .+.....
T Consensus 337 ViDEaH~~~-~~~~~~~~~l~~~~~~-------~~~~vl~~SAT~~~~i~~~~~----~---------~~---~i~~v~~ 392 (673)
T 2wv9_A 337 VMDEAHFTD-PASIAARGYIATRVEA-------GEAAAIFMTATPPGTSDPFPD----T---------NS---PVHDVSS 392 (673)
T ss_dssp EEESTTCCC-HHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSCC----C---------SS---CEEEEEC
T ss_pred EEeCCcccC-ccHHHHHHHHHHhccc-------cCCcEEEEcCCCChhhhhhcc----c---------CC---ceEEEee
Confidence 999999871 1111122222222211 134999999999866432110 0 00 0000000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
.... . ....++..+.+ .++++||||++++.++.+++.|++.+..+..+||+ +|.++++.|++ |+.+|||
T Consensus 393 ~~~~-~-~~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~--g~~~VLV 461 (673)
T 2wv9_A 393 EIPD-R-AWSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN--GDWDFVI 461 (673)
T ss_dssp CCCS-S-CCSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT--CCCSEEE
T ss_pred ecCH-H-HHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC--CCceEEE
Confidence 0110 1 11112222222 46799999999999999999999999999999994 88999999999 9999999
Q ss_pred EecccccccCCCCCEEEE--------------------cCCCCCchhhhhhhcccccC-CCcceEEEEe---eCCcHHHH
Q 047490 256 CTDLAARGLDLDVDHVIM--------------------FDFPLNSIDYLHRTGRTARM-GAKGKVTSLV---AKKDVLLA 311 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~vi~--------------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~ 311 (323)
||+++++|+|+++++||+ ++.|.+..+|.||+||+||. |+.|.|++++ +..|...+
T Consensus 462 aTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l 541 (673)
T 2wv9_A 462 TTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLA 541 (673)
T ss_dssp ECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBH
T ss_pred ECchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHH
Confidence 999999999999999998 56889999999999999999 6899999996 56777677
Q ss_pred HHHHHHH
Q 047490 312 DRIEEAI 318 (323)
Q Consensus 312 ~~i~~~l 318 (323)
+.++..+
T Consensus 542 ~~ie~~~ 548 (673)
T 2wv9_A 542 HWTEAKI 548 (673)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=1e-29 Score=226.86 Aligned_cols=243 Identities=15% Similarity=0.157 Sum_probs=161.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++||++||++|+.|+.+.++.+ .+....+.... ....+..+.++|.+.+.+.+... ..++++++|
T Consensus 49 ~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~i 116 (459)
T 2z83_A 49 QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLF 116 (459)
T ss_dssp TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEE
T ss_pred CCCcEEEECchHHHHHHHHHHhcCc------eEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEE
Confidence 4679999999999999999988732 22222111110 01223357788888887666543 457899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.. ........+...... .+.+++++|||++.....+... ..+... ...
T Consensus 117 ViDEaH~~~~-~~~~~~~~~~~~~~~-------~~~~~il~SAT~~~~~~~~~~~--~~pi~~-----------~~~--- 172 (459)
T 2z83_A 117 VMDEAHFTDP-ASIAARGYIATKVEL-------GEAAAIFMTATPPGTTDPFPDS--NAPIHD-----------LQD--- 172 (459)
T ss_dssp EESSTTCCSH-HHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSCCC--SSCEEE-----------EEC---
T ss_pred EEECCccCCc-hhhHHHHHHHHHhcc-------CCccEEEEEcCCCcchhhhccC--CCCeEE-----------ecc---
Confidence 9999997310 001111111111110 2459999999998654321100 000000 000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
..+. .+...+.+.+.. .++++||||++++.++.+++.|+..+..+..+||+ +|..+++.|++ |+.+|||
T Consensus 173 ~~~~--~~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~--g~~~iLV 241 (459)
T 2z83_A 173 EIPD--RAWSSGYEWITE---YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN--GDWDFVI 241 (459)
T ss_dssp CCCS--SCCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS--CCCSEEE
T ss_pred cCCc--chhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC--CCceEEE
Confidence 0000 000111122222 35799999999999999999999999999999995 67788999999 9999999
Q ss_pred EecccccccCC-CCCEEEE--------------------cCCCCCchhhhhhhcccccCCC-cceEEEEeeCC
Q 047490 256 CTDLAARGLDL-DVDHVIM--------------------FDFPLNSIDYLHRTGRTARMGA-KGKVTSLVAKK 306 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~--------------------~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~~ 306 (323)
||+++++|+|+ + ++||+ |+.|.|...|.||+||+||.|. .|.+++++...
T Consensus 242 aT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 242 TTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999 7 99999 6699999999999999999997 99999999875
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-28 Score=227.81 Aligned_cols=285 Identities=20% Similarity=0.291 Sum_probs=195.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc------------ccCCCCCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED------------SLNNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~Iii~Tp~~l~~~~ 82 (323)
.....+||||| .+|+.||.+++.+|.+ ++++...+|+........ .....++|+|+|++.+....
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~ 360 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR 360 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH
Confidence 33567899999 7889999999999986 457777777654322111 12235789999999997643
Q ss_pred HcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHH---HH---------
Q 047490 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKL---VD--------- 149 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~---~~--------- 149 (323)
.. +....+++||+||||++-+ ........+..+... ..+++||||... ..++ +.
T Consensus 361 ~~--l~~~~w~~vIvDEaH~lkn--~~s~~~~~l~~l~~~---------~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 361 AE--LGSIKWQFMAVDEAHRLKN--AESSLYESLNSFKVA---------NRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp HH--HHTSEEEEEEETTGGGGCC--SSSHHHHHHTTSEEE---------EEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred HH--HhcCCcceeehhhhhhhcC--chhHHHHHHHHhhhc---------cEEEeeCCcCCCCHHHHHHHHHHhCccccCc
Confidence 32 2233689999999999854 334555556555443 689999999421 1111 11
Q ss_pred ---------------------HHhcCceeeeccccc--cccccceeeEEec-----------------------------
Q 047490 150 ---------------------EECQGIAHLRTSTLH--KKIASARHDFIKL----------------------------- 177 (323)
Q Consensus 150 ---------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------------------------- 177 (323)
..+.. ..++..... ...+........+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~L~~~l~p-~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~ 506 (800)
T 3mwy_W 428 DQEIDFENQDEEQEEYIHDLHRRIQP-FILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGH 506 (800)
T ss_dssp -------CCTTHHHHHHHHHHHTTGG-GEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------
T ss_pred hhhhcccccchhHHHHHHHHHHHHhH-HHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccch
Confidence 00000 000000000 0000000000000
Q ss_pred ---------------------------------------------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHH
Q 047490 178 ---------------------------------------------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSR 212 (323)
Q Consensus 178 ---------------------------------------------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~ 212 (323)
.....|+..|.+++......+.++||||+....++
T Consensus 507 ~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld 586 (800)
T 3mwy_W 507 FSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLD 586 (800)
T ss_dssp CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHH
T ss_pred hhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHH
Confidence 00234677777777777678899999999999999
Q ss_pred HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC-CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhccc
Q 047490 213 AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED-GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRT 290 (323)
Q Consensus 213 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~ 290 (323)
.+...|...++.+..+||+++..+|..+++.|++++ +...+|++|.+++.|+|+ .+++||++++|+|+..+.|++||+
T Consensus 587 ~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 587 ILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp HHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTT
T ss_pred HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999832 233589999999999999 999999999999999999999999
Q ss_pred ccCCCcc--eEEEEeeCC--cHHHHHHHHH
Q 047490 291 ARMGAKG--KVTSLVAKK--DVLLADRIEE 316 (323)
Q Consensus 291 ~R~~~~g--~~~~~~~~~--~~~~~~~i~~ 316 (323)
+|.|+.. .++.+++.. |...+....+
T Consensus 667 ~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 667 HRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp SCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 9999754 455566654 3334444333
No 56
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=8.8e-28 Score=184.59 Aligned_cols=150 Identities=34% Similarity=0.557 Sum_probs=137.3
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..++.+.+..+. ...|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..++++|++
T Consensus 7 ~~~i~~~~~~~~-~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVR-EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECC-GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECC-hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 445566666554 577999999988764 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|+.+|||||+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.++++++..|...++.+++.++.+
T Consensus 84 --g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 84 --GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp --TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred --CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999988653
No 57
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=4.5e-27 Score=217.86 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=97.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC---CEEEEecccccccCC-CCCEEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC---PTLVCTDLAARGLDL-DVDHVI 272 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~---~ilv~t~~~~~Gid~-~~~~vi 272 (323)
.+.++||||+....++.+.+.|...++.+..+||+++..+|.+++++|++ +.. .+|++|.++++|+|+ .+++||
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~L~st~a~g~Glnl~~a~~Vi 492 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNN--PSSPEFIFMLSSKAGGCGLNLIGANRLV 492 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHS--TTCCCCEEEEEGGGSCTTCCCTTEEEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEecccccCCcccccCCEEE
Confidence 46899999999999999999999999999999999999999999999998 543 488999999999999 999999
Q ss_pred EcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 273 MFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 273 ~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
++|+|||+..+.|++||++|.|+... ++.+++..
T Consensus 493 ~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 493 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999997654 55556654
No 58
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.5e-28 Score=186.68 Aligned_cols=151 Identities=23% Similarity=0.460 Sum_probs=135.2
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..++.+.|..+.....|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..+++.|++
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4467777777776666999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCC------CCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP------LNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|..+|||||+++++|+|+ ++++||++++| .+...|.||+||+||.|+.|.++++++..+...++.+++.++
T Consensus 83 --g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 83 --GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp --TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred --CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 999999999999999999 99999999999 899999999999999999999999999999999999999886
Q ss_pred hc
Q 047490 320 KN 321 (323)
Q Consensus 320 ~~ 321 (323)
..
T Consensus 161 ~~ 162 (175)
T 2rb4_A 161 SS 162 (175)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 59
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.2e-27 Score=184.20 Aligned_cols=149 Identities=28% Similarity=0.522 Sum_probs=131.5
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.+.+.+..+...+.|...|.+++... .++++||||++...++.+++.|+..+..+..+||+|+..+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-- 78 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-- 78 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc--
Confidence 45666776665555999999998875 56899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|+.+|||||+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.++++++..+...++.+++.++..
T Consensus 79 g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 79 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp TSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred CCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999887653
No 60
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=188.07 Aligned_cols=165 Identities=25% Similarity=0.434 Sum_probs=132.9
Q ss_pred hcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC
Q 047490 152 CQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 231 (323)
+..+..+...........+.+.+..+. ...|...|.+.+... ++++||||++...++.+++.|+..++.+..+||+
T Consensus 12 ~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 12 DLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ----------------CCSEEEEEECC-GGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344444444333444556667666654 567999999998763 5689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHH
Q 047490 232 VPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVL 309 (323)
Q Consensus 232 ~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~ 309 (323)
++..+|..+++.|++ |+.+|||||+++++|+|+ ++++||+|++|++...|.||+||+||.|+.|.++++++.. +..
T Consensus 88 ~~~~~R~~~l~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 88 KDQEERTKAIEAFRE--GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp SCHHHHHHHHHHHHH--TSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 999999999999999 999999999999999999 9999999999999999999999999999999999999976 788
Q ss_pred HHHHHHHHHHhcC
Q 047490 310 LADRIEEAIRKNE 322 (323)
Q Consensus 310 ~~~~i~~~l~~~~ 322 (323)
.++.+++.++...
T Consensus 166 ~~~~l~~~l~~~~ 178 (191)
T 2p6n_A 166 VLMDLKALLLEAK 178 (191)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 8999999887643
No 61
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.95 E-value=5.8e-27 Score=210.97 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=133.1
Q ss_pred eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccH
Q 047490 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211 (323)
Q Consensus 132 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~ 211 (323)
++.+||+|...+...+.+.+......+ +. ..+.......-........|...+.+.+.+....+.|+||||++...+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~vv~I--Pt-nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGMEVVVI--PT-HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCCEEEC--CC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHhCCeEEEE--CC-CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHH
Confidence 799999999877766554443332222 21 222222222112223456788999988876545678999999999999
Q ss_pred HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCC---------CCEEEEcCCCCCchh
Q 047490 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD---------VDHVIMFDFPLNSID 282 (323)
Q Consensus 212 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~---------~~~vi~~~~p~s~~~ 282 (323)
+.+++.|+..++++..+||+....++..+...++. |. |+|||+.+++|+|+. ..+||+++.|.|.+.
T Consensus 488 E~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~--VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 488 ELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM--VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC--EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce--EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999999999999999766666666677776 64 999999999999983 359999999999999
Q ss_pred hhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 283 YLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 283 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|.||+||+||.|.+|.+++|++..|..
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred HHHhhCccccCCCCeeEEEEechhHHH
Confidence 999999999999999999999988743
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=185.51 Aligned_cols=153 Identities=29% Similarity=0.561 Sum_probs=125.1
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
...++.+.+..+. ...|...|.+++... ..+.++||||++...++.+++.|+..+..+..+||+|+..+|..+++.|+
T Consensus 16 ~~~~i~q~~~~v~-~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 16 TSENITQKVVWVE-ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CCTTEEEEEEECC-GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCceEEEEEeC-cHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 3445666666655 567999999988774 35689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
+ |+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++..+...++.+++.++...
T Consensus 94 ~--g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 94 S--GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169 (185)
T ss_dssp H--TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred c--CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc
Confidence 9 999999999999999999 99999999999999999999999999999999999999999999999999987653
No 63
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=4.1e-27 Score=182.25 Aligned_cols=148 Identities=26% Similarity=0.505 Sum_probs=133.3
Q ss_pred ccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 168 ASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 168 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
..+.+++..+. ...|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..+++.|++
T Consensus 4 ~~i~q~~~~~~-~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~- 79 (172)
T 1t5i_A 4 HGLQQYYVKLK-DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD- 79 (172)
T ss_dssp -CCEEEEEECC-GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-
T ss_pred CCeEEEEEECC-hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-
Confidence 34556666554 577999999998865 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHh
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRK 320 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~ 320 (323)
|+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++.. +...++.+++.++.
T Consensus 80 -g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 80 -FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp -TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred -CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999999999999999999999976 56778888887654
No 64
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.6e-26 Score=185.02 Aligned_cols=139 Identities=31% Similarity=0.495 Sum_probs=128.2
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.....|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..+++.|++ |..+|||||
T Consensus 13 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT 88 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ--GEVRVLVAT 88 (212)
T ss_dssp CCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS--SSCCEEEEC
T ss_pred CCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC--CCCeEEEec
Confidence 34567999999988754 57899999999999999999999999999999999999999999999999 999999999
Q ss_pred cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.|+++++..+...++.+++.++.
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999 999999999999999999999999999999999999999999999999887764
No 65
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-25 Score=187.14 Aligned_cols=145 Identities=29% Similarity=0.478 Sum_probs=128.6
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.+.++.+. ...|.+.|.+++... .++++||||++...++.+++.|...++.+..+||+|++.+|..+++.|++ |.
T Consensus 4 ~~~~i~~~-~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~--g~ 78 (300)
T 3i32_A 4 EEEAVPAP-VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ--GE 78 (300)
T ss_dssp EEEEEECC-SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH--TS
T ss_pred EEEEEECC-HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc--CC
Confidence 34455444 567999999988764 47899999999999999999999999999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+|||||+++++|+|+ ++++||+++.|++...|.||+||+||.|+.|.|+++++..+...++.+++.++.
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999 999999999999999999999999999999999999999999999999888765
No 66
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.3e-27 Score=185.03 Aligned_cols=147 Identities=33% Similarity=0.556 Sum_probs=132.7
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+.+..++....|...|.+++... .++++||||++...++.+++.|+..+..+..+||+|+..+|..+++.|++ |
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g 79 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE--G 79 (170)
Confidence 4455555554367888888888763 56799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++..+...++.+++.++.
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 99999999999999999 999999999999999999999999999999999999999999999888887654
No 67
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=6.6e-25 Score=203.18 Aligned_cols=227 Identities=22% Similarity=0.275 Sum_probs=159.5
Q ss_pred eChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC--ChhhHH----HHHhh---hccccCC-C------CCCCceEEEE
Q 047490 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG--FGPDIR----KFLVP---LKNRASK-P------NGQGFQTVLV 136 (323)
Q Consensus 73 ~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~----~i~~~---~~~~~~~-~------~~~~~~~i~~ 136 (323)
+||++|++++... .++|+||+|++.+.. +..... ..... ++..... . .....|++++
T Consensus 320 ~tpg~LlDyl~~~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDD-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSS-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccC-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 7899888876432 389999999976320 000000 11000 0000000 0 0013489999
Q ss_pred EeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHH
Q 047490 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDH 216 (323)
Q Consensus 137 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~ 216 (323)
|||+++..... ............ ........+.....+...++..+......+.++||||++...++.+++
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~-----~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPT-----GLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTT-----CCCCCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeeccc-----CCCCCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99997543221 111111111100 000111222333456666766666655567899999999999999999
Q ss_pred HHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCC-----CCCchhhhhhhccc
Q 047490 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF-----PLNSIDYLHRTGRT 290 (323)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~-----p~s~~~~~Q~~GR~ 290 (323)
.|++.++.+..+||+++..+|..++++|+. |+.+|||||+.+++|+|+ ++++||+++. |.|...|.||+||+
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 999999999999999999999999999999 999999999999999999 9999999997 99999999999999
Q ss_pred ccCCCcceEEEEeeCCcHHHHHHHHHHH
Q 047490 291 ARMGAKGKVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 291 ~R~~~~g~~~~~~~~~~~~~~~~i~~~l 318 (323)
||. ..|.++++++..+....+.+++..
T Consensus 542 gR~-~~G~~i~~~~~~~~~~~~~i~~~~ 568 (661)
T 2d7d_A 542 ARN-AEGRVIMYADKITKSMEIAINETK 568 (661)
T ss_dssp TTS-TTCEEEEECSSCCHHHHHHHHHHH
T ss_pred cCC-CCCEEEEEEeCCCHHHHHHHHHHH
Confidence 998 789999999998887776666544
No 68
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=9.1e-25 Score=202.32 Aligned_cols=136 Identities=24% Similarity=0.361 Sum_probs=122.0
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...+...++..+......+.++||||++...++.+++.|.+.++.+..+||+++..+|.++++.|+. |+.+|||||+.
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~~ 498 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDCLVGINL 498 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESCC
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCceEEEccCh
Confidence 3456666766666555567899999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCC-CCCEEEEcCC-----CCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHH
Q 047490 260 AARGLDL-DVDHVIMFDF-----PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l 318 (323)
+++|+|+ ++++||+++. |.|...|.||+||+||.+ .|.++++++..+....+.+++..
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHH
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHH
Confidence 9999999 9999999997 889999999999999995 89999999998887777776654
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.92 E-value=6.8e-25 Score=210.01 Aligned_cols=268 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcCC--CCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDGN--MVYGDI 92 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~~--~~~~~~ 92 (323)
...++|||+|+++|+.|+.+.++.+... .+.++.........+ ..+.+|+|+||++|...+.... ..++.+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~ 402 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQ 402 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSC
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccc
Confidence 3469999999999999999999998653 122333322222333 3457999999999998876532 235678
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH----HHHHHHhcCceeeeccc---ccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ----KLVDEECQGIAHLRTST---LHK 165 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~----~~~~~~~~~~~~~~~~~---~~~ 165 (323)
.+||+||||++.. +.....+...++. .+++++||||..... ......+..+.+..... ...
T Consensus 403 ~lvIiDEAHrs~~---~~~~~~I~~~~p~---------a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg 470 (1038)
T 2w00_A 403 VVFIFDECHRSQF---GEAQKNLKKKFKR---------YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDE 470 (1038)
T ss_dssp EEEEEESCCTTHH---HHHHHHHHHHCSS---------EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHT
T ss_pred cEEEEEccchhcc---hHHHHHHHHhCCc---------ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCC
Confidence 9999999998754 2335555555543 389999999974321 11111111111100000 000
Q ss_pred ccccceeeEEe------------------------ccCChhHHHHHHHHhccCC----------CCCCeEEEEecCcccH
Q 047490 166 KIASARHDFIK------------------------LSGSENKLEALLQVLEPSL----------SKGNKVMVFCNTLNSS 211 (323)
Q Consensus 166 ~~~~~~~~~~~------------------------~~~~~~k~~~l~~~l~~~~----------~~~~~~lvf~~~~~~~ 211 (323)
....+...+.. .-..+.++..+.+.+..++ ..+.++||||+++..|
T Consensus 471 ~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A 550 (1038)
T 2w00_A 471 KVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAA 550 (1038)
T ss_dssp SSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHH
T ss_pred CcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHH
Confidence 00000000000 0012233444443221111 1346899999999999
Q ss_pred HHHHHHHhhCC------------Cee-EEecCC----------C----------CHH-----------------------
Q 047490 212 RAVDHFLNENQ------------IST-VNYHGE----------V----------PAQ----------------------- 235 (323)
Q Consensus 212 ~~l~~~l~~~~------------~~~-~~~~~~----------~----------~~~----------------------- 235 (323)
..+++.|.+.+ ..+ .++||+ + ++.
T Consensus 551 ~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~ 630 (1038)
T 2w00_A 551 KAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTD 630 (1038)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccccc
Confidence 99999987643 344 345542 2 221
Q ss_pred ------HHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCc----ceEEEEee
Q 047490 236 ------ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK----GKVTSLVA 304 (323)
Q Consensus 236 ------~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~----g~~~~~~~ 304 (323)
.|..++++|++ |+++|||+|+.+.+|+|+ .+ +++++|.|.+...|.|++||++|.+.. |.++.+..
T Consensus 631 ~~~~~~~R~~i~~~Fk~--g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 631 SNGFQNYYRDLAQRVKN--QDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHHHHHHHT--TSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred chhhhHHHHHHHHHHHc--CCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 37788999999 999999999999999999 77 789999999999999999999998753 55665554
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=1.6e-20 Score=172.49 Aligned_cols=283 Identities=13% Similarity=0.147 Sum_probs=197.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~~ 89 (323)
+..++|++||++||.|.++.+..++...++++..++|+...... ....+++|+|+||+.| ++++..+. ..+
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 56899999999999999999999999999999999999764332 2233589999999999 78887653 456
Q ss_pred C---CCcEEeecchhhhh-cCCCh---------------hhHHHHHhhhccccC-----------CC--CC---------
Q 047490 90 G---DIKYLVLDEADTMF-DRGFG---------------PDIRKFLVPLKNRAS-----------KP--NG--------- 128 (323)
Q Consensus 90 ~---~~~~vIiDE~h~~~-~~~~~---------------~~~~~i~~~~~~~~~-----------~~--~~--------- 128 (323)
+ ++.++|+||+|.++ +.+.. ..+..++..+..... .. +.
T Consensus 198 r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe 277 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTL 277 (997)
T ss_dssp CSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCH
T ss_pred ccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEch
Confidence 7 89999999999986 22211 123344444432100 00 00
Q ss_pred ------------------CC------------------------------------------------------------
Q 047490 129 ------------------QG------------------------------------------------------------ 130 (323)
Q Consensus 129 ------------------~~------------------------------------------------------------ 130 (323)
.+
T Consensus 278 ~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv 357 (997)
T 2ipc_A 278 QGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGV 357 (997)
T ss_dssp HHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCC
Confidence 00
Q ss_pred ---------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHH
Q 047490 131 ---------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189 (323)
Q Consensus 131 ---------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 189 (323)
-++.+||+|...+..++.+-+......++. ..+.......-........|..++.+
T Consensus 358 ~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPT---n~p~~R~D~~d~vy~t~~~K~~AIv~ 434 (997)
T 2ipc_A 358 RIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPT---NRPVIRKDFPDVVYRTEKGKFYAVVE 434 (997)
T ss_dssp CCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHHCCCEEECCC---SSCCCCEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHHHhCCCEEEcCC---CCCcccccCCCeEEcCHHHHHHHHHH
Confidence 167888888876665554444333332222 11211122221223445778888888
Q ss_pred HhccCCCCCCeEEEEecCcccHHHHHHHHh--------------------------------------------------
Q 047490 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLN-------------------------------------------------- 219 (323)
Q Consensus 190 ~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------------------------------------------- 219 (323)
-+.+....+.|+||.|.|.+..+.+.+.|+
T Consensus 435 eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 514 (997)
T 2ipc_A 435 EIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFE 514 (997)
T ss_dssp HHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGG
T ss_pred HHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccc
Confidence 787766789999999999999999999998
Q ss_pred --------------------------hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC----
Q 047490 220 --------------------------ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---- 269 (323)
Q Consensus 220 --------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---- 269 (323)
..+++..+++......+-+-|.+.-+. |. |-|||+.+++|.|+.+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--Ga--VTIATNMAGRGTDIkLggn~e 590 (997)
T 2ipc_A 515 GLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KT--VTIATNMAGRGTDIKLGGNPE 590 (997)
T ss_dssp GGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TC--EEEECSSTTTTSCCCSSCCHH
T ss_pred ccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--Ce--EEEEecccCCCcCeecCCCHH
Confidence 345555556655443333333333333 54 89999999999998222
Q ss_pred -----------------------------------------------------------------------EEEEcCCCC
Q 047490 270 -----------------------------------------------------------------------HVIMFDFPL 278 (323)
Q Consensus 270 -----------------------------------------------------------------------~vi~~~~p~ 278 (323)
+||-...+.
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhE 670 (997)
T 2ipc_A 591 YLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHE 670 (997)
T ss_dssp HHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCS
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCc
Confidence 899999999
Q ss_pred CchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 279 NSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 279 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
|.+.-.|..||+||.|.+|.+..+++..|.
T Consensus 671 SrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 671 SRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp SHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 999999999999999999999999987764
No 71
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.86 E-value=1.9e-21 Score=159.22 Aligned_cols=139 Identities=37% Similarity=0.584 Sum_probs=122.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++.+++......++++++
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 179 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccE
Confidence 46789999999999999999999999988889999999998777666666667899999999999999888888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
+|+||||++.+++|...+..++..+.. +.|++++|||+++........++.++..+...
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~--------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRP--------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCS--------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCc--------cceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999887754 34999999999999999999998877665543
No 72
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.85 E-value=1.5e-20 Score=151.56 Aligned_cols=139 Identities=26% Similarity=0.424 Sum_probs=118.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc----ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA----RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
..+++++||++||++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||+++.+.+......+
T Consensus 69 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 148 (219)
T 1q0u_A 69 ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDV 148 (219)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCG
T ss_pred CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCc
Confidence 3457899999999999999999999998765 678888888877666556666678999999999999998877778
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
++++++|+||||++.++++...+..++..++. +.|++++|||+++.+.++...++..+..+..
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPK--------DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT--------TCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCc--------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 89999999999999998898888888877753 3499999999999999999998887765543
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.85 E-value=1.1e-20 Score=155.69 Aligned_cols=144 Identities=33% Similarity=0.515 Sum_probs=120.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++.+.+......++++++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 177 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 177 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCE
Confidence 34579999999999999999999999887788999999988776666666777899999999999999888778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST 162 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 162 (323)
+|+||||++.++++...+..++..+... ...+.|++++|||+++...+....++..+..+....
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~----~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMP----SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCC----CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCC----CCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999999988754221 011348999999999999999988888776655443
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=3.5e-20 Score=147.97 Aligned_cols=137 Identities=31% Similarity=0.476 Sum_probs=116.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
...+++++||++||++|+.|+.+.++++.... +.++..++|+.........+..+++|+|+||+++.+.+.+....+++
T Consensus 67 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 67 LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 34567899999999999999999999998766 67888888887766555556677899999999999999887778899
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
++++|+||+|++.+.++...+..++..++.. .+++++|||+++...+....++..+..
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~--------~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKN--------RQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTT--------CEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCcc--------ceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 9999999999999888988888888777532 399999999999999988888776543
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=151.08 Aligned_cols=134 Identities=32% Similarity=0.459 Sum_probs=111.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++||++|+.|+.+.++++. ..++++..++|+.........+..+++|+|+||+++.+++......++++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 367899999999999999999999986 4478889999988877776666677899999999999998888888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
+|+||||++.++++...+..++..+... .|++++|||+++........++..+..
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~--------~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPD--------RQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSS--------CEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcC--------CeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 9999999999999999999998877543 499999999999999888887776544
No 76
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.84 E-value=4.3e-20 Score=150.61 Aligned_cols=137 Identities=31% Similarity=0.465 Sum_probs=108.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCC-CCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP-IDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
..+++++||++||++|+.|+.+.++++....+..+..+.|+.........+..+ ++|+|+||+++.+.+.+....++++
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 346789999999999999999999999887788888888887766655555444 8999999999999998877778899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
+++|+||||++.++++...+..++..+.. +.+++++|||+++...+....++..+..+
T Consensus 175 ~~lViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 175 KMFVLDEADEMLSRGFKDQIYEIFQKLNT--------SIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHHSCT--------TCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred cEEEECCchHhhccCcHHHHHHHHHhCCC--------CCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 99999999999998898888888877653 34999999999999999888888766544
No 77
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.84 E-value=7.8e-21 Score=157.12 Aligned_cols=126 Identities=21% Similarity=0.373 Sum_probs=99.5
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCC-CCC-EEE
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDG-DCP-TLV 255 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g-~~~-ilv 255 (323)
....|...|.+++......+.++||||+....++.+...|... ++.+..+||+++..+|..++++|++ + ..+ +|+
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~v~L~ 170 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN--NPSVKFIVL 170 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH--CTTCCEEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcC--CCCCCEEEE
Confidence 3567999999998877667889999999999999999999874 8999999999999999999999998 6 566 789
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
+|.++++|+|+ .+++||+||+|||+..|.|++||++|.|+.+. ++.+++..
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999 99999999999999999999999999997665 45566654
No 78
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.84 E-value=8.9e-20 Score=147.57 Aligned_cols=139 Identities=30% Similarity=0.498 Sum_probs=111.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
...+++++||++|+++|+.|+.+.++++....++++..++|+.........+.+ ++|+|+||+++.+.+.+....++++
T Consensus 78 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 78 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhC
Confidence 345678999999999999999999999988888899999998776655555544 8999999999999998887788999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
+++|+||||++.++++...+..++..+.. +.+++++|||+++........++..+..+..
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPP--------TTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCT--------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCc--------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999998898888888877653 3399999999999999999888877665543
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=152.10 Aligned_cols=138 Identities=33% Similarity=0.477 Sum_probs=117.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~~~~ 91 (323)
...+++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++.+.+.+ ....+++
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 345578999999999999999999999988888899999998776555555566789999999999998876 4566889
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
++++|+||||++.++++...+..++..++.. .+++++|||+++...+....++..+..+
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~~~~--------~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVIPRD--------RKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSSCSS--------SEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhCCCC--------CeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999988776532 3999999999999999888888776654
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.83 E-value=6.6e-20 Score=148.86 Aligned_cols=137 Identities=27% Similarity=0.423 Sum_probs=113.0
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
...+++++||++||++|+.|+.+.++++.... ++++..++|+.........+ .+++|+|+||+++.+++......+++
T Consensus 88 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 88 LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred hcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccccc
Confidence 44567899999999999999999999997654 78888888887655444433 35899999999999998887777889
Q ss_pred CcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 92 IKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
++++|+||+|++.+++ +...+..++..++.. .|++++|||+++...+....++..+..+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~--------~~~l~lSAT~~~~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPAS--------KQMLAVSATYPEFLANALTKYMRDPTFV 226 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSS--------CEEEEEESCCCHHHHHHHTTTCSSCEEE
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCC--------CeEEEEEeccCHHHHHHHHHHcCCCeEE
Confidence 9999999999999887 888888888877532 3899999999999888877776655443
No 81
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=151.83 Aligned_cols=131 Identities=34% Similarity=0.585 Sum_probs=113.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKY 94 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~ 94 (323)
+++++||++||++|+.|+.+.+++++...+..+..+.|+.........+..+++|+|+||+++...+... ...++++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 4788999999999999999999999988888999999987766665555566899999999999888765 367889999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG 154 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~ 154 (323)
+|+||||++.++++...+..++..+... .|++++|||+++....+....+..
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~~--------~q~l~~SAT~~~~v~~~~~~~l~~ 256 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPTR--------RQTMLFSATQTRKVEDLARISLKK 256 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCSS--------SEEEEECSSCCHHHHHHHHHHCSS
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCCC--------CeEEEEEecCCHHHHHHHHHHcCC
Confidence 9999999999999999999998887643 399999999999999888776654
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.82 E-value=9.8e-20 Score=145.47 Aligned_cols=134 Identities=34% Similarity=0.493 Sum_probs=113.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++|+++|+.|+.+.++++... +++..++|+.........+..+++|+|+||+++.+.+......++++++
T Consensus 70 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 70 GRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 46789999999999999999999999764 5788888887665555555566899999999999999887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
+|+||+|++.+.++...+..++..+.. +.+++++|||+++...+....++..+..+
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLSATPP--------SRQTLLFSATLPSWAKRLAERYMKNPVLI 203 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHTSCT--------TSEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEChhHhhccchHHHHHHHHHhCCc--------cCeEEEEEEecCHHHHHHHHHHcCCCeEE
Confidence 999999999998898888888776643 33999999999999998888887766544
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=149.33 Aligned_cols=138 Identities=25% Similarity=0.340 Sum_probs=112.3
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMV 88 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~ 88 (323)
.....+++++|||+||++|+.|+.+.++.+.... ++.+....|+....... ..+++|+|+||+++.+++.+ ..+.
T Consensus 156 l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 156 VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFID 232 (300)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCC
T ss_pred hhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCC
Confidence 3345667899999999999999999999998654 57888888876543332 44579999999999999866 4566
Q ss_pred CCCCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 89 YGDIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
+++++++|+||+|++.+ .++...+..++..+.. +.|++++|||+++.+..+...++..+..+.
T Consensus 233 l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT--------TCEEEEEESCCCHHHHHHHHHHSSSCEEEE
T ss_pred hhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC--------CCEEEEEeccCCHHHHHHHHHHCCCCeEEE
Confidence 88999999999999997 6788888888777654 349999999999999999999888776554
No 84
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=145.93 Aligned_cols=136 Identities=32% Similarity=0.548 Sum_probs=112.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIK 93 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~ 93 (323)
.+++++||++||++|+.|+.+.++++....++++..++|+.........+ .+++|+|+||+++.+.+... ...+.+++
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 173 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQ 173 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCccccccc
Confidence 45789999999999999999999999888788999999987665544444 35899999999999888764 46678999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
++|+||+|++.++++...+..++..++.. .+++++|||+++........++..+..+.
T Consensus 174 ~lViDEah~~~~~~~~~~~~~i~~~~~~~--------~~~l~~SAT~~~~~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 174 MLVLDEADRILDMGFADTMNAVIENLPKK--------RQTLLFSATQTKSVKDLARLSLKNPEYVW 231 (236)
T ss_dssp EEEETTHHHHHHTTTHHHHHHHHHTSCTT--------SEEEEEESSCCHHHHHHHHHSCSSCEEEE
T ss_pred EEEEeChHHHhcCCcHHHHHHHHHhCCCC--------CeEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999998888877543 38999999999999888887777665543
No 85
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=4.7e-19 Score=142.90 Aligned_cols=135 Identities=27% Similarity=0.415 Sum_probs=108.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+++++||++||++|+.|+.+.++++.... ++++..++|+.........+. ..++|+|+||+++...+......++++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 445799999999999999999999998765 688888888876554444333 346999999999999998877788999
Q ss_pred cEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 93 KYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 93 ~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
+++|+||||++.++ ++...+..++..+.. +.+++++|||+++...+....++.++..
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~p~~ 217 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPH--------EKQVMMFSATLSKEIRPVCRKFMQDPME 217 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCS--------SSEEEEEESCCCTTTHHHHHTTCSSCEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCC--------cCeEEEEEeecCHHHHHHHHHHcCCCeE
Confidence 99999999999863 566666666655542 3499999999999998888887776554
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=143.30 Aligned_cols=140 Identities=22% Similarity=0.412 Sum_probs=111.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc-cccCCCCCEEEeChHHHHHHHHcC--CCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE-DSLNNPIDMVVGTPGRILQHIEDG--NMVYGD 91 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~~ 91 (323)
.+++++||++||++|+.|+.+.++++....++++..++++....... .....+++|+|+||+++..++... ...+++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 45779999999999999999999999988888888887765433322 233456899999999999998876 466889
Q ss_pred CcEEeecchhhhhcC---CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 92 IKYLVLDEADTMFDR---GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
++++|+||||++.++ ++...+..++..+.. .+.+++++|||+++....+...++.++..+...
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999874 466666666554432 235999999999999999999998887766544
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=116.94 Aligned_cols=124 Identities=18% Similarity=0.216 Sum_probs=79.1
Q ss_pred CCCccEEEEcCCHHHHHH-HHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC------C
Q 047490 15 PRRPRAVVLCPTRELSEQ-VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN------M 87 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~------~ 87 (323)
.+++++||++|+++|+.| +.+.++.+... ++++..++|+............+++|+|+||+.+...+.... .
T Consensus 80 ~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 158 (216)
T 3b6e_A 80 SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGV 158 (216)
T ss_dssp TCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CC
T ss_pred cCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccccccc
Confidence 346799999999999999 88888888754 678888888876655444444457999999999998887643 5
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHH-HHHhhh-ccc----cCCCCCCCceEEEEEee
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIR-KFLVPL-KNR----ASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~-~i~~~~-~~~----~~~~~~~~~~~i~~sat 139 (323)
.+.++++||+||+|++...++...+. ..+... ... .......+.+++++|||
T Consensus 159 ~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred chhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 57889999999999997655444332 222111 100 01111134599999998
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.51 E-value=5.1e-14 Score=127.94 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE--EecccccccCC-C----CC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV--CTDLAARGLDL-D----VD 269 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv--~t~~~~~Gid~-~----~~ 269 (323)
.+++++||++|....+.+++.++.. . ...+|.. .++.+++++|++ +. .|++ +|..+.+|||+ + ++
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~~--~-~~~q~~~--~~~~~~l~~f~~--~~-~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSGI--P-VIEENKK--TRHEEVLELMKT--GK-YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTTS--C-EEESTTT--CCHHHHHHHHHT--SC-CEEEEEC---------------CEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhccC--c-eEecCCC--CcHHHHHHHHhc--CC-eEEEEEecCceecceecCCCccccc
Confidence 4679999999999999999988652 2 3445553 478899999987 54 5777 77999999999 6 88
Q ss_pred EEEEcCCCCCc------------------------------hhhhhhhcccccCCC-cceEEE
Q 047490 270 HVIMFDFPLNS------------------------------IDYLHRTGRTARMGA-KGKVTS 301 (323)
Q Consensus 270 ~vi~~~~p~s~------------------------------~~~~Q~~GR~~R~~~-~g~~~~ 301 (323)
+||+++.|... ....|.+||+-|... .|.+++
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99999988411 234699999999854 454443
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.47 E-value=1.6e-13 Score=114.56 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=84.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
..++||++|+++|+.|+.++++++.......+..++++..... ....+.+|+|+||+.+.+. ....++++++||
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vI 230 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMM 230 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEE
Confidence 4489999999999999999999997766678888888765432 2234579999999977543 223467889999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
+||||++.+ +.+..++..+... .+++++|||+++...
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~--------~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNC--------MFKFGLSGSLRDGKA 267 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTC--------CEEEEECSSCCTTST
T ss_pred EECCccCCc----ccHHHHHHHhhcC--------CeEEEEeCCCCCcch
Confidence 999999853 4666666665332 399999999986543
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.39 E-value=3.4e-11 Score=109.75 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=57.7
Q ss_pred HHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe--cccc
Q 047490 185 EALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT--DLAA 261 (323)
Q Consensus 185 ~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t--~~~~ 261 (323)
..+.+.+.... ..++.++||+++....+.+++. .+..+..=..+++ +.+.++.|+. ..-.||+++ ..+.
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~--~~~~vl~~v~gg~~~ 450 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISA--NNKVLIGSVGKGKLA 450 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTS--SSSCEEEEESSCCSC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHh--cCCeEEEEEecceec
Confidence 44444443322 2467999999999999888873 3333333223344 4567888864 223699998 6999
Q ss_pred cccCCC------CCEEEEcCCCC
Q 047490 262 RGLDLD------VDHVIMFDFPL 278 (323)
Q Consensus 262 ~Gid~~------~~~vi~~~~p~ 278 (323)
+|||++ +..||+.+.|.
T Consensus 451 EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 451 EGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CSSCCEETTEESEEEEEEESCCC
T ss_pred ccccccccCCcceeEEEEEcCCC
Confidence 999994 67899988763
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=99.80 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=75.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc-cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++++++|+++++.|+.+.+...... .+..++... .........+++|+|+||+++.+.+.. .+++++++
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~l 180 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSV-----RFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHV 180 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEE-----TTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEE
T ss_pred ceEEEEeccchHHHHHHHHHHHHHhccccCceEEEee-----chhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEE
Confidence 568999999999999999988776542 222332211 111111124578999999999998876 38899999
Q ss_pred eecchhhh-hcCCCh-hhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 96 VLDEADTM-FDRGFG-PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 96 IiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
|+||+|.+ .+.++. ..+..+....+ +.|++++|||++.+.
T Consensus 181 VlDEah~~~~~~~~~~~~l~~i~~~~~---------~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 181 IVDEIHERDINTDFLLVVLRDVVQAYP---------EVRIVLMSATIDTSM 222 (235)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHHCT---------TSEEEEEECSSCCHH
T ss_pred EEECCccCCcchHHHHHHHHHHHhhCC---------CCeEEEEecCCCHHH
Confidence 99999974 433333 23344443322 349999999998765
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.22 E-value=4.2e-11 Score=97.04 Aligned_cols=99 Identities=15% Similarity=0.062 Sum_probs=72.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcccccee-EEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFR-STMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.+++|++|+++|+.|+.+.++++ ++. +..+.|+... ..+|+|+||+.+...... ...++++|
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~ll 196 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLL 196 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEE
Confidence 568999999999999999999884 446 6667665431 358999999998766542 23468999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
|+||+|++.+.. +..++..+.. .+++++||||.+..
T Consensus 197 IiDEaH~l~~~~----~~~i~~~~~~---------~~~l~LSATp~r~D 232 (237)
T 2fz4_A 197 IFDEVHHLPAES----YVQIAQMSIA---------PFRLGLTATFERED 232 (237)
T ss_dssp EEECSSCCCTTT----HHHHHHTCCC---------SEEEEEEESCC---
T ss_pred EEECCccCCChH----HHHHHHhccC---------CEEEEEecCCCCCC
Confidence 999999986543 3445444432 27999999997543
No 93
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.47 E-value=1.9e-06 Score=71.55 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|+..|-+++....+.+.+++||++..+..+-+-..+...++....+.|.....+++ -.. +.+.+.+.|+.
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~--~~~~i~Lltsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----AND--FSCTVHLFSSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------C--CSEEEEEEESS
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----ccc--CCceEEEEECC
Confidence 45687777777766666889999999999999999999998899999999985533211 112 45556666777
Q ss_pred cccccC-----C-CCCEEEEcCCCCCchhh-hhhhcccccCC----CcceEEEEeeCCcHH
Q 047490 260 AARGLD-----L-DVDHVIMFDFPLNSIDY-LHRTGRTARMG----AKGKVTSLVAKKDVL 309 (323)
Q Consensus 260 ~~~Gid-----~-~~~~vi~~~~p~s~~~~-~Q~~GR~~R~~----~~g~~~~~~~~~~~~ 309 (323)
.+.|+| + .++.||.||..+++..- .|++-|+.|.| +.-.++-+++....+
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 777775 7 89999999999999986 89998998873 345688888876554
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.20 E-value=9.1e-06 Score=74.85 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=67.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec--ccccccCC-C--CCEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD--LAARGLDL-D--VDHV 271 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~--~~~~Gid~-~--~~~v 271 (323)
.++.++||++|....+.+++.++..+ .. ...+++..++..++++|+ ++-.||+++. .+.+|||+ + +..|
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~~--~~-~~q~~~~~~~~~ll~~f~---~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFEH--MK-EYRGIDQKELYSMLKKFR---RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSCC--EE-CCTTCCSHHHHHHHHHHT---TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhcc--hh-ccCCCChhHHHHHHHHhc---cCCcEEEEEecCceeccccCCCCceEEE
Confidence 45689999999999999988886222 22 445566678999999999 3445899984 89999999 4 8899
Q ss_pred EEcCCCCC-------------------c----------hhhhhhhcccccCCC-cceEEE
Q 047490 272 IMFDFPLN-------------------S----------IDYLHRTGRTARMGA-KGKVTS 301 (323)
Q Consensus 272 i~~~~p~s-------------------~----------~~~~Q~~GR~~R~~~-~g~~~~ 301 (323)
|+.+.|.. . ....|.+||+-|... .|.+++
T Consensus 521 iI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~l 580 (620)
T 4a15_A 521 ILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVI 580 (620)
T ss_dssp EESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEE
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEE
Confidence 99998741 1 112599999999754 444443
No 95
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.23 E-value=0.0017 Score=59.75 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeec
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG 53 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 53 (323)
+++++|++||++++.|+.+.++.+....++++..+.|
T Consensus 51 ~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 51 KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEEC
Confidence 5799999999999999999999987655556555444
No 96
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.18 E-value=0.012 Score=55.55 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=73.0
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|.....-.+......+.++++.+|++..+...++.+++ .+..+..+||+++..++...++...+ |
T Consensus 393 Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g 470 (780)
T 1gm5_A 393 LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--G 470 (780)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--S
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--C
Confidence 33344455565544333333334567999999999988888776654 37899999999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEEc
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIMF 274 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~~ 274 (323)
..+|+|+|.. +...+++ ++..||.=
T Consensus 471 ~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 471 QIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CCCEEEECHHHHhhhhhccCCceEEec
Confidence 9999999975 3445677 78877763
No 97
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.66 E-value=0.03 Score=48.70 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=71.2
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...+.+..|....+-.+......+.+++|.+|++..+..+++.++. .+..+..++|+.+..++....+.+.. +..
T Consensus 41 v~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~ 118 (414)
T 3oiy_A 41 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDY 118 (414)
T ss_dssp CCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCC
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCC
Confidence 3344456666533333222224678999999999999999999888 57799999999999888888888887 878
Q ss_pred CEEEEecccc----cccCC-CCCEEEEc
Q 047490 252 PTLVCTDLAA----RGLDL-DVDHVIMF 274 (323)
Q Consensus 252 ~ilv~t~~~~----~Gid~-~~~~vi~~ 274 (323)
+|+|+|+-.- .-++. +++.||.=
T Consensus 119 ~Iiv~Tp~~l~~~l~~~~~~~~~~iViD 146 (414)
T 3oiy_A 119 HILVFSTQFVSKNREKLSQKRFDFVFVD 146 (414)
T ss_dssp SEEEEEHHHHHHCHHHHTTCCCSEEEES
T ss_pred CEEEECHHHHHHHHHHhccccccEEEEe
Confidence 9999996321 12455 67776653
No 98
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.40 E-value=0.052 Score=49.86 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++++++||...+.++.+.+.......++..... .. .......+. .++-.+|+.. . +.........+++
T Consensus 194 ~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~--~~~~~~Tih---~ll~~~~~~~-~-~~~~~~~~l~~d~ 265 (608)
T 1w36_D 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KR--IPEDASTLH---RLLGAQPGSQ-R-LRHHAGNPLHLDV 265 (608)
T ss_dssp SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CS--CSCCCBTTT---SCC-------------CTTSCCSCSE
T ss_pred cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hc--cchhhhhhH---hhhccCCCch-H-HHhccCCCCCCCE
Confidence 4567999999999999999888877654433221000 00 000000000 1222233221 1 1111112237899
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
+|+||++.+ + .+.+..++..++.. .++++++-.
T Consensus 266 lIIDEAsml-~---~~~~~~Ll~~l~~~--------~~liLvGD~ 298 (608)
T 1w36_D 266 LVVDEASMI-D---LPMMSRLIDALPDH--------ARVIFLGDR 298 (608)
T ss_dssp EEECSGGGC-B---HHHHHHHHHTCCTT--------CEEEEEECT
T ss_pred EEEechhhC-C---HHHHHHHHHhCCCC--------CEEEEEcch
Confidence 999999944 3 34556666655432 277777654
No 99
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.07 E-value=0.045 Score=40.77 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=56.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.+...++.++||.++++.-+..+++.+++. ++.+..++|+.....+...+ .+..+|+|+|. .+ ...
T Consensus 29 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G 98 (163)
T 2hjv_A 29 VLMTENPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARG 98 (163)
T ss_dssp HHHHHCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTT
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcC
Confidence 333445678999999999999999988875 56888899887654443322 34578999992 22 345
Q ss_pred CCCCCCcEEeecch
Q 047490 87 MVYGDIKYLVLDEA 100 (323)
Q Consensus 87 ~~~~~~~~vIiDE~ 100 (323)
+.+.++++||.-+.
T Consensus 99 ld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 99 IDIENISLVINYDL 112 (163)
T ss_dssp CCCSCCSEEEESSC
T ss_pred CchhcCCEEEEeCC
Confidence 66778888886443
No 100
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.84 E-value=0.053 Score=40.91 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=57.9
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
++...+...++.++||.|+++..+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. .
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~- 93 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V- 93 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-
Confidence 3444455556779999999999999998888775 56888899887655443332 35678999993 2
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
-...+.+..+++||.
T Consensus 94 ~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 94 CARGIDVKQVTIVVN 108 (175)
T ss_dssp CCTTTCCTTEEEEEE
T ss_pred hhcCCCcccCCEEEE
Confidence 233566778888885
No 101
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.76 E-value=0.076 Score=52.28 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=74.2
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
....+.+..|....+-.+......+.++||.+|++..+..+++.++. .+..+..+||+++..++...++.+.. |.
T Consensus 97 lv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~ 174 (1104)
T 4ddu_A 97 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DD 174 (1104)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SC
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CC
Confidence 34445566676654444333335678999999999999999999988 46789999999999888888899988 88
Q ss_pred CCEEEEecccc-c---ccCC-CCCEEEEcC
Q 047490 251 CPTLVCTDLAA-R---GLDL-DVDHVIMFD 275 (323)
Q Consensus 251 ~~ilv~t~~~~-~---Gid~-~~~~vi~~~ 275 (323)
.+|+|+|+-.- . -+++ +++++|+=.
T Consensus 175 ~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 175 YHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp CSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred CCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 89999996321 1 2446 777777633
No 102
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.67 E-value=0.066 Score=39.94 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=56.8
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
..+...++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+...|+|+|. . -..
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~ 92 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LAR 92 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhc
Confidence 3344445679999999999999999888775 56788899887654443322 35578999993 2 234
Q ss_pred CCCCCCCcEEeecch
Q 047490 86 NMVYGDIKYLVLDEA 100 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~ 100 (323)
.+.+.++++||.-+.
T Consensus 93 G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 93 GIDVQQVSLVINYDL 107 (165)
T ss_dssp TCCCCSCSEEEESSC
T ss_pred CCCcccCCEEEEeCC
Confidence 566778888876443
No 103
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.01 E-value=0.081 Score=41.36 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...++.++||.++++.-+..+.+.++.. +..+..++|+.....+...+ .+..+|+|+|. . -
T Consensus 22 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~ 91 (212)
T 3eaq_A 22 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-A 91 (212)
T ss_dssp HHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-T
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-h
Confidence 333344445679999999999999999888775 56888899987655543332 35578999992 2 2
Q ss_pred cCCCCCCCCcEEee
Q 047490 84 DGNMVYGDIKYLVL 97 (323)
Q Consensus 84 ~~~~~~~~~~~vIi 97 (323)
...+.+.++++||.
T Consensus 92 ~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 92 ARGLDIPQVDLVVH 105 (212)
T ss_dssp TCSSSCCCBSEEEE
T ss_pred hcCCCCccCcEEEE
Confidence 34567788888884
No 104
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.83 E-value=0.078 Score=39.88 Aligned_cols=82 Identities=9% Similarity=0.028 Sum_probs=57.0
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHc
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~ 84 (323)
...+...++.++||.|+++.-+..+++.++.. ++.+..++|+.....+...+ .+...|+|+|. . -.
T Consensus 23 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~ 92 (172)
T 1t5i_A 23 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FG 92 (172)
T ss_dssp HHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CS
T ss_pred HHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hh
Confidence 33344445679999999999999999988875 56788888886654433322 35678999993 1 22
Q ss_pred CCCCCCCCcEEeecch
Q 047490 85 GNMVYGDIKYLVLDEA 100 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~ 100 (323)
..+.+.++++||.-+.
T Consensus 93 ~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 93 RGMDIERVNIAFNYDM 108 (172)
T ss_dssp TTCCGGGCSEEEESSC
T ss_pred cCcchhhCCEEEEECC
Confidence 3566777888876443
No 105
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.65 E-value=0.18 Score=49.96 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=70.4
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+.........+.+++|.+|++..+...++.+++ .+..+..+++..+..++..+++.... |
T Consensus 628 ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g 705 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--G 705 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--T
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--C
Confidence 44444456666443322211223567999999999988888777654 36788899999999999999999988 9
Q ss_pred CCCEEEEec-ccccccCC-CCCEEEE
Q 047490 250 DCPTLVCTD-LAARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~-~~~~Gid~-~~~~vi~ 273 (323)
..+|+|+|. .+...+.+ ++..||.
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCEEEECHHHHhCCccccccceEEE
Confidence 999999995 44445677 7776665
No 106
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.35 E-value=0.26 Score=37.75 Aligned_cols=73 Identities=10% Similarity=0.210 Sum_probs=53.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
++++||.++++.-+..+.+.++.. ++.+..++|+....++...+ .+..+|+|+| +.+. ..+.+.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 458999999999999999988775 56888899987654443332 3457899999 3333 35667888
Q ss_pred cEEeecc
Q 047490 93 KYLVLDE 99 (323)
Q Consensus 93 ~~vIiDE 99 (323)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887633
No 107
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.88 E-value=0.16 Score=38.73 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=46.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++++.-+..+++.++.. ++.+..++|+.....+...+ .+..+|+|+|. .+ ...+.+.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCccc
Confidence 5678999999999999999888775 56888899887655544332 34578999993 22 23456778
Q ss_pred CcEEeecc
Q 047490 92 IKYLVLDE 99 (323)
Q Consensus 92 ~~~vIiDE 99 (323)
+++||.=+
T Consensus 115 ~~~VI~~d 122 (185)
T 2jgn_A 115 VKHVINFD 122 (185)
T ss_dssp BSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 108
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.26 E-value=0.23 Score=41.07 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=57.8
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+....+.++||.|+++.-+..+.+.+... ++.+..++|+.....+...+ .+..+|+|+|. . -
T Consensus 19 L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a 88 (300)
T 3i32_A 19 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-A 88 (300)
T ss_dssp HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-T
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-h
Confidence 333333344779999999999999888888764 66888999987765544333 34578999992 2 2
Q ss_pred cCCCCCCCCcEEeecc
Q 047490 84 DGNMVYGDIKYLVLDE 99 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE 99 (323)
...+.+.++++||.=+
T Consensus 89 ~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 89 ARGLDIPQVDLVVHYR 104 (300)
T ss_dssp TCSTTCCCCSEEEESS
T ss_pred hcCccccceeEEEEcC
Confidence 3456788898888533
No 109
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=89.82 E-value=0.052 Score=40.77 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=54.6
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...++.++||.++++.-+..+++.++.. ++.+..++|+.....+...+ .+..+|+|+|. .+.
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA 91 (170)
Confidence 334444556678999999999998888887765 56788888886655444333 23567999992 222
Q ss_pred cCCCCCCCCcEEeecc
Q 047490 84 DGNMVYGDIKYLVLDE 99 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE 99 (323)
..+.+.++++||.-+
T Consensus 92 -~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 92 -RGIDIPDVSHVFNFD 106 (170)
Confidence 245566677776533
No 110
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.13 E-value=0.6 Score=41.96 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=54.0
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
++++||.+|++..+....+.|+..+..+..++|+.+..++..+...... +..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECH
Confidence 4689999999999999999999999999999999999998888888888 8899999996
No 111
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.98 E-value=0.59 Score=42.70 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
++++||.+|++..++...+.|+..+..+..++|+++..++..++.......+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4699999999999999999999889999999999999999888888843237889999997
No 112
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.52 E-value=0.99 Score=39.54 Aligned_cols=69 Identities=6% Similarity=0.011 Sum_probs=46.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||.||+++-+.++++.+++. +.++..++|+...........+..+|+|+|. .+ ...+.+. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----ST-TCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEEE
Confidence 568999999999999999998886 5688888884322222222245579999993 22 3356677 88877
No 113
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.92 E-value=2.5 Score=32.72 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=60.9
Q ss_pred EEeccCChhHHHHHH-HHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEALL-QVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~-~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|..... -++.... ..+.+++|.++++..+..+++.++.. +..+..++|+.+....... +.
T Consensus 55 li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~ 131 (220)
T 1t6n_A 55 LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LK 131 (220)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HH
T ss_pred EEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---Hh
Confidence 344455566654333 2222211 12348999999999999888777654 6788899999886655433 33
Q ss_pred ccCCCCCEEEEecc-c-----ccccCC-CCCEEEEc
Q 047490 246 NEDGDCPTLVCTDL-A-----ARGLDL-DVDHVIMF 274 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-~-----~~Gid~-~~~~vi~~ 274 (323)
+ +..+|+|+|+- + ...+++ +++.+|.=
T Consensus 132 ~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 132 K--NCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp H--SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred c--CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 4 55679999962 1 123566 77777763
No 114
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.56 E-value=2.4 Score=39.33 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++|+..+..+.+.++.. ++++..++|+.....+...+ .+..+|+|+|- . -...+.+.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCC
Confidence 4569999999999999998888876 56778888776544433322 24578999993 2 234677888
Q ss_pred CcEEeecchhhh
Q 047490 92 IKYLVLDEADTM 103 (323)
Q Consensus 92 ~~~vIiDE~h~~ 103 (323)
+++||+-|++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999888743
No 115
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.88 E-value=3.5 Score=38.21 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=56.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++|+..+..+.+.+++. ++++..++|+.....+... + .+..+|+|+|- . -...+.+.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~-l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----L-LREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----C-CCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----h-hhcCccCCC
Confidence 3569999999999999998888876 5677788877654443332 2 34578999992 2 234677888
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
+++||+=|++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99998888764
No 116
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=87.86 E-value=1.1 Score=38.14 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=57.7
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
...++.++||.++++.-+..+++.++.. +..+..++|+.....+...+ .+..+|+|+|. . -...+.
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gid 308 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARGID 308 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSSCC
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcCCC
Confidence 3445679999999999999999988876 55788888887655443332 34578999993 2 334677
Q ss_pred CCCCcEEeecchh
Q 047490 89 YGDIKYLVLDEAD 101 (323)
Q Consensus 89 ~~~~~~vIiDE~h 101 (323)
+.++++||.-+..
T Consensus 309 ip~~~~Vi~~~~p 321 (395)
T 3pey_A 309 IPTVSMVVNYDLP 321 (395)
T ss_dssp CTTEEEEEESSCC
T ss_pred cccCCEEEEcCCC
Confidence 8889999875554
No 117
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.73 E-value=0.57 Score=40.30 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. . -...+.+.
T Consensus 264 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip 333 (412)
T 3fht_A 264 ITIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVE 333 (412)
T ss_dssp HSSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCT
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCcc
Confidence 34568999999999999999988876 55788888887655543332 35578999993 2 33467788
Q ss_pred CCcEEeec
Q 047490 91 DIKYLVLD 98 (323)
Q Consensus 91 ~~~~vIiD 98 (323)
++++||.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 89988853
No 118
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.64 E-value=1.1 Score=40.66 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=58.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.|+++.-+..+++.+++... .+..+..++|+.....+...+ .+..+|+|+|. . -...+.+.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip 409 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFP 409 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcc
Confidence 5577999999999999999999988754 256888889887655443332 35578999993 2 33467788
Q ss_pred CCcEEeecch
Q 047490 91 DIKYLVLDEA 100 (323)
Q Consensus 91 ~~~~vIiDE~ 100 (323)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8999886554
No 119
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.55 E-value=0.68 Score=39.51 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=56.4
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
+...++.++||.++++.-+..+++.++.. +..+..++|+.....+...+ .+...|+|+|. . -...+
T Consensus 245 l~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gi 314 (391)
T 1xti_A 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGM 314 (391)
T ss_dssp HHHSCCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCB
T ss_pred HHhcCCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCC
Confidence 33345679999999999999999988875 56788888886654443322 34578999993 2 23456
Q ss_pred CCCCCcEEeecch
Q 047490 88 VYGDIKYLVLDEA 100 (323)
Q Consensus 88 ~~~~~~~vIiDE~ 100 (323)
.+..+++||.-+.
T Consensus 315 di~~~~~Vi~~~~ 327 (391)
T 1xti_A 315 DIERVNIAFNYDM 327 (391)
T ss_dssp CCTTEEEEEESSC
T ss_pred CcccCCEEEEeCC
Confidence 7788888887554
No 120
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.30 E-value=1.1 Score=40.67 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.|+|+.-+..+++.+++... .+..+..++|+.....+...+ .+..+|+|+|. .+ ...+.+.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcc
Confidence 5567999999999999999999988754 256888899987655443332 35578999993 23 3467788
Q ss_pred CCcEEeecch
Q 047490 91 DIKYLVLDEA 100 (323)
Q Consensus 91 ~~~~vIiDE~ 100 (323)
++++||.-+.
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8999987554
No 121
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=87.24 E-value=1.1 Score=39.11 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=52.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+||.|+++.-+..+++.+++. +..+..++|+....++...+ .+...|+|+|. . -...+.+.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCE
Confidence 4999999999999999888875 56788899987655443332 34578999994 2 334677888888
Q ss_pred Eee
Q 047490 95 LVL 97 (323)
Q Consensus 95 vIi 97 (323)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 122
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.71 E-value=1.4 Score=37.87 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=53.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.+++++-+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. .+. ..+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 5678999999999999999888775 56888899887655443332 34578999993 333 3567788
Q ss_pred CcEEee
Q 047490 92 IKYLVL 97 (323)
Q Consensus 92 ~~~vIi 97 (323)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 123
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.57 E-value=4.6 Score=30.70 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=58.7
Q ss_pred EEeccCChhHHHH-HHHHhccCC-----CCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEA-LLQVLEPSL-----SKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~-l~~~l~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|... +..++.... ..+.++++.++++..+..+++.++.. +..+..++|+.+.......+.
T Consensus 42 li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 118 (207)
T 2gxq_A 42 IGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL--- 118 (207)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---
T ss_pred EEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---
Confidence 3444555666654 333332221 24568999999999999999888765 467788888877554433222
Q ss_pred ccCCCCCEEEEecc-----ccc-ccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-----AAR-GLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-----~~~-Gid~-~~~~vi~ 273 (323)
...+|+|+|+- +.. .+++ +++.+|.
T Consensus 119 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 119 ---RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp ---HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred ---CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 23569999962 122 3456 6777776
No 124
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.48 E-value=0.84 Score=39.13 Aligned_cols=77 Identities=6% Similarity=0.128 Sum_probs=54.9
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
...++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+...|+|+|. . -...+.
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gid 323 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGID 323 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCC
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCC
Confidence 3345679999999999999999988876 55788888887654443322 34578999993 2 233566
Q ss_pred CCCCcEEeecc
Q 047490 89 YGDIKYLVLDE 99 (323)
Q Consensus 89 ~~~~~~vIiDE 99 (323)
+.++++||.-+
T Consensus 324 ip~~~~Vi~~~ 334 (400)
T 1s2m_A 324 IQAVNVVINFD 334 (400)
T ss_dssp CTTEEEEEESS
T ss_pred ccCCCEEEEeC
Confidence 77888888533
No 125
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=85.91 E-value=2.2 Score=39.62 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+.++||.||+++-+.++++.|++. +.++..++|+...........+..+|+|+| +.+. ..+.+. +++|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~V 477 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRV 477 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEE
Confidence 3678999999999999998888775 568888888522222222224567999999 3333 345566 7776
Q ss_pred e
Q 047490 96 V 96 (323)
Q Consensus 96 I 96 (323)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 126
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.78 E-value=3.3 Score=32.52 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=54.3
Q ss_pred eEEeccCChhHHHHH-HHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 173 DFIKLSGSENKLEAL-LQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l-~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.....+.+..|.... +.++.... ..+.++||.++++..+..+++.++.. +..+..++|+.+... ..+...
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~ 146 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQ 146 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHh
Confidence 344455567776543 33332221 24569999999999999888887654 456777777755332 223444
Q ss_pred ccCCCCCEEEEec-----cccc-ccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTD-----LAAR-GLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~-----~~~~-Gid~-~~~~vi~ 273 (323)
. +..+|+|+|+ .+.. .+++ .++.+|.
T Consensus 147 ~--~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 147 A--EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp ---CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred c--CCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 4 6678999994 2223 3556 6777776
No 127
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=85.77 E-value=1.3 Score=30.04 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=33.3
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 46679999999988899999999999998888999854
No 128
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.19 E-value=1.3 Score=37.29 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.+++++-+.++++.+++. +..+..++|+.....+...+ .+..+|+|+|. .+.. .+.+.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~ 305 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVN 305 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcc
Confidence 45678999999999999999988876 56788888886654443322 34578999993 2222 45577
Q ss_pred CCcEEeecc
Q 047490 91 DIKYLVLDE 99 (323)
Q Consensus 91 ~~~~vIiDE 99 (323)
++++||.-+
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 788888644
No 129
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.16 E-value=2.8 Score=33.29 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----c--ccccCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----A--ARGLDL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~--~~Gid~ 266 (323)
+.++||.++++..+..+++.++.. +..+..++|+.+...+...+ . +..+|+|+|+- + ..++++
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A---KKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H---TCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c---CCCCEEEECHHHHHHHHHcCCCcCc
Confidence 457999999999998888777654 77888899988755543322 2 44679999952 1 134667
Q ss_pred -CCCEEEE
Q 047490 267 -DVDHVIM 273 (323)
Q Consensus 267 -~~~~vi~ 273 (323)
+++.+|.
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 7887776
No 130
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=84.00 E-value=3 Score=36.33 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=38.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
...+|++||++++.++.+.+..... . .....-+.|-++++. ..........+.+|+
T Consensus 185 ~~~lVlTpT~~aa~~l~~kl~~~~~-------------~---------~~~~~~V~T~dsfL~--~~~~~~~~~~d~lii 240 (446)
T 3vkw_A 185 EEDLILVPGRQAAEMIRRRANASGI-------------I---------VATKDNVRTVDSFLM--NYGKGARCQFKRLFI 240 (446)
T ss_dssp TTCEEEESCHHHHHHHHHHHTTTSC-------------C---------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEE
T ss_pred CCeEEEeCCHHHHHHHHHHhhhcCc-------------c---------ccccceEEEeHHhhc--CCCCCCCCcCCEEEE
Confidence 3679999999999998887743210 0 001233678666542 222222235899999
Q ss_pred cchhhh
Q 047490 98 DEADTM 103 (323)
Q Consensus 98 DE~h~~ 103 (323)
||+-.+
T Consensus 241 DE~sm~ 246 (446)
T 3vkw_A 241 DEGLML 246 (446)
T ss_dssp ETGGGS
T ss_pred eCcccC
Confidence 999754
No 131
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=83.97 E-value=0.95 Score=38.95 Aligned_cols=74 Identities=11% Similarity=0.204 Sum_probs=53.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
...++||.|+++.-+..+++.+++. +..+..++|+....++...+ .+...|+|+|. . -...+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~ 344 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQ 344 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCccc
Confidence 3568999999999999999888875 55788888887655443332 34578999993 2 334677888
Q ss_pred CcEEeecc
Q 047490 92 IKYLVLDE 99 (323)
Q Consensus 92 ~~~vIiDE 99 (323)
+++||.-+
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88888633
No 132
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.59 E-value=4.8 Score=31.23 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----c-ccccCC-
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----A-ARGLDL- 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~-~~Gid~- 266 (323)
.+.++|+.++++..+..+++.++.. +..+..++|+.+...+.. .+. ...+|+|+|+- + ...+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS---KGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH---SCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc---CCCCEEEECHHHHHHHHHcCCcCcc
Confidence 5678999999999999998888764 677888888876444332 223 33679999952 1 224556
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
+++.+|.
T Consensus 167 ~~~~lVi 173 (228)
T 3iuy_A 167 SITYLVI 173 (228)
T ss_dssp TCCEEEE
T ss_pred cceEEEE
Confidence 7877776
No 133
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=83.53 E-value=1.2 Score=29.90 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35679999999998899999999999998888888854
No 134
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.37 E-value=4.2 Score=31.68 Aligned_cols=93 Identities=11% Similarity=0.175 Sum_probs=59.7
Q ss_pred EEeccCChhHHHH-HHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEA-LLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|... ++.++.... ..+.++||.++++..+..+++.++.. +..+..++|+.+...+...+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 140 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---- 140 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----
Confidence 3444555666654 333333221 24579999999999999988887753 67788899998866554322
Q ss_pred ccCCCCCEEEEecc-c-----ccccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-A-----ARGLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-~-----~~Gid~-~~~~vi~ 273 (323)
...+|+|+|+- + ...+++ +++.+|.
T Consensus 141 ---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 ---KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp ---TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ---cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 23569999963 1 123556 6777766
No 135
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=83.28 E-value=1.2 Score=29.75 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35679999999998999999999999998888888854
No 136
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.99 E-value=1.8 Score=37.85 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeec--------CccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG--------GGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
.++.++||.++++.-+..+.+.++.. ++.+..++| +.....+...+ .+...|+|+|. .+
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc
Confidence 46789999999999999998888876 567888888 44444333222 34578999992 22
Q ss_pred HcCCCCCCCCcEEeecchh
Q 047490 83 EDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h 101 (323)
...+.+..+++||+-+..
T Consensus 430 -~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -GGGGGSTTCCEEEESSCC
T ss_pred -ccCCCchhCCEEEEeCCC
Confidence 235667778888865543
No 137
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=82.75 E-value=3.6 Score=36.02 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=48.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||.+|++.-+.++++.+++. +..+..++++.........-.+..+|+|+| +.+. ..+.+.. ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISE-MGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGG-SSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHH-hCcCCCC-CEEE
Confidence 458999999999999999988775 567778887655322222234567999999 3333 3455666 7766
No 138
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=82.62 E-value=1.4 Score=29.74 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 45679999999988899999999999998887888753
No 139
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=82.60 E-value=1.8 Score=42.52 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=61.6
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CC----eeEEecCCCCHHHHHHHHHhccccCC
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QI----STVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+..|....+-.+......+.+++|.+|++..+..+++.++.. +. .+..++|+.+...+....+.+..
T Consensus 79 pTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--- 155 (1054)
T 1gku_B 79 PTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--- 155 (1054)
T ss_dssp CBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---
T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---
Confidence 33444543333333333345679999999999999888877643 45 78899999998887777777763
Q ss_pred CCCEEEEecc-cccccC-C-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLD-L-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid-~-~~~~vi~ 273 (323)
.+|+|+|+- +..-+. + +++.+|.
T Consensus 156 -~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 -FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp -CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred -CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 679999962 222222 4 5666665
No 140
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.45 E-value=3.1 Score=32.80 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----ccc-ccCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----AAR-GLDL 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~~~-Gid~ 266 (323)
.+.++||.++++..+..+.+.++. .+..+..++|+.+.......+. ...+|+|+|+- +.. .+++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE------RGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHHHHHHcCCCCc
Confidence 456899999999999888776654 3788899999988666544332 23569999962 222 3467
Q ss_pred -CCCEEEEc
Q 047490 267 -DVDHVIMF 274 (323)
Q Consensus 267 -~~~~vi~~ 274 (323)
+++.+|.=
T Consensus 175 ~~~~~lViD 183 (242)
T 3fe2_A 175 RRTTYLVLD 183 (242)
T ss_dssp TTCCEEEET
T ss_pred ccccEEEEe
Confidence 78877763
No 141
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.38 E-value=3.6 Score=32.18 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----cc--ccC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----AR--GLD 265 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~--Gid 265 (323)
.+.+++|.++++..+..+++.++.. +..+..++|+.+.......+ +..+|+|+|+- + .. .++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHHHHHHCSSCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHHHHHhcCCcc
Confidence 4568999999999999888877764 47788899987755443322 23569999952 2 11 355
Q ss_pred C-CCCEEEE
Q 047490 266 L-DVDHVIM 273 (323)
Q Consensus 266 ~-~~~~vi~ 273 (323)
+ +++.+|.
T Consensus 169 ~~~~~~lVi 177 (236)
T 2pl3_A 169 ATDLQMLVL 177 (236)
T ss_dssp CTTCCEEEE
T ss_pred cccccEEEE
Confidence 6 6777766
No 142
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.42 E-value=1.6 Score=38.07 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=46.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++||.+|+++-+..+++.+++. +.++..++|+...........+..+|+|+| ..+.. .+.+. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 458999999999999999999886 568888888732221112223567999999 33443 44454 5554
No 143
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.96 E-value=2.6 Score=39.84 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=54.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcc-------ccceeEEEeecCccCCcccccc---------CCCCCEEEeChHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISH-------HARFRSTMVSGGGRLRPQEDSL---------NNPIDMVVGTPGRI 78 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Iii~Tp~~l 78 (323)
.++..+||.+|++.-+.++++.+++... ..++.+..++|+....++...+ .+...|+|+|.
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~--- 377 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN--- 377 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT---
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc---
Confidence 3467999999999999999999886321 2467899999987765554433 22457999993
Q ss_pred HHHHHcCCCCCCCCcEEee
Q 047490 79 LQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 79 ~~~~~~~~~~~~~~~~vIi 97 (323)
.+. ..+.+.++++||-
T Consensus 378 --iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 --IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp --HHH-HTCCCTTEEEEEE
T ss_pred --HHH-hCcCcCCeEEEEe
Confidence 233 3566778887774
No 144
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.82 E-value=6.2 Score=29.91 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=57.2
Q ss_pred EEeccCChhHHHHHH-HHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEALL-QVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~-~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|..... .++.... ..+.++++.++++..+..+++.++.. +..+..++|+.+...... ...
T Consensus 44 lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~ 120 (206)
T 1vec_A 44 LARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLD 120 (206)
T ss_dssp EEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTT
T ss_pred EEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcC
Confidence 344444555554322 3332211 23468999999999998888777543 567888899877544322 222
Q ss_pred ccCCCCCEEEEecc-----cccc-cCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-----AARG-LDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-----~~~G-id~-~~~~vi~ 273 (323)
+..+|+|+|+- +..+ .++ +++.+|.
T Consensus 121 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 121 ---DTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp ---SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ---CCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 45679999962 2222 356 6777776
No 145
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=80.34 E-value=3.7 Score=37.71 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC----------------------------
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR---------------------------- 58 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (323)
++...+.+.++.++++++||...+.++.+.+.+. ++++..+.+.....
T Consensus 214 ~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~----~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~ 289 (624)
T 2gk6_A 214 TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT----GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ 289 (624)
T ss_dssp HHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT----TCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHT
T ss_pred HHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc----CCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHH
Q ss_pred ---------------------ccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHh
Q 047490 59 ---------------------PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLV 117 (323)
Q Consensus 59 ---------------------~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~ 117 (323)
.........++|+++|...+. ...+.-..+++||+|||. .......++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~----~~~l~~~~fd~viIDEAs------Q~~e~~~li~ 359 (624)
T 2gk6_A 290 LKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG----DPRLAKMQFRSILIDEST------QATEPECMVP 359 (624)
T ss_dssp TCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG----CGGGTTCCCSEEEETTGG------GSCHHHHHHH
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc----chhhhcCCCCEEEEeccc------ccCcHHHHHH
Q ss_pred hhccccCCCCCCCceEEEEE
Q 047490 118 PLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~s 137 (323)
.+.... ++++++
T Consensus 360 l~~~~~--------~~ilvG 371 (624)
T 2gk6_A 360 VVLGAK--------QLILVG 371 (624)
T ss_dssp HTTTBS--------EEEEEE
T ss_pred HHhcCC--------eEEEec
No 146
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.83 E-value=1.7 Score=28.58 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+ .++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 89999999988888999999998988777888865
No 147
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=79.76 E-value=5.1 Score=35.17 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=46.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||.+|++.-+..+++.+++. +..+..++++.........-.+..+|+|+|- .+. ..+.+.. ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 568999999999999999998876 5678888886332222222245578999993 222 2455666 6665
No 148
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.55 E-value=5.6 Score=26.56 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=8.0
Q ss_pred HHHHhccccCCCCCEEEEec
Q 047490 239 ENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~ 258 (323)
++++.+.+ -..-++++|+
T Consensus 70 eiwerypq--ldvvvivttd 87 (162)
T 2l82_A 70 EIWERYPQ--LDVVVIVTTD 87 (162)
T ss_dssp HHHHHCTT--CCEEEEEECC
T ss_pred HHHHhCCC--CcEEEEEecC
Confidence 34444444 3333445554
No 149
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=78.93 E-value=1.7 Score=30.61 Aligned_cols=37 Identities=11% Similarity=0.299 Sum_probs=31.2
Q ss_pred CC-CeEEEEe-cCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 197 KG-NKVMVFC-NTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 197 ~~-~~~lvf~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
+. .++++|| .+-..+..++..|+..|+.+..+.|++.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 44 7999999 5777788889999999998899999865
No 150
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=78.83 E-value=1.8 Score=30.19 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCccc--HHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNS--SRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-.. +..++..|+..|+.+..+.|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 456799999999877 78899999999999888888854
No 151
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.56 E-value=6.3 Score=30.36 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=53.8
Q ss_pred eEEeccCChhHHHH-HHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 173 DFIKLSGSENKLEA-LLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 173 ~~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.....+.+..|... ++.++.... ..+.++|+.++++..+..+++.++.. +..+..++|+.+...... .+
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~- 129 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL- 129 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC-
Confidence 34445556667654 333333221 24568999999999998888777653 677888888876444322 12
Q ss_pred ccCCCCCEEEEeccc------ccccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDLA------ARGLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~------~~Gid~-~~~~vi~ 273 (323)
...+|+|+|+-. ....++ +++.+|.
T Consensus 130 ---~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 130 ---RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ---TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ---CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 226799999631 223456 6777765
No 152
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=78.02 E-value=1.6 Score=29.42 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 35678999999988899999999999885 788888854
No 153
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=77.82 E-value=6.9 Score=30.92 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----cc-ccCC-
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----AR-GLDL- 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~-Gid~- 266 (323)
+.++||.++++..+..+++.++.. +..+..++|+.+....... .. ...+|+|+|+- + .. .+++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQ---MGCHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HS---SCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hC---CCCCEEEECHHHHHHHHHcCCCChh
Confidence 358999999999999888777653 5677788888775544322 22 44679999962 2 11 3456
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
+++.+|.
T Consensus 174 ~~~~lVi 180 (253)
T 1wrb_A 174 FCKYIVL 180 (253)
T ss_dssp TCCEEEE
T ss_pred hCCEEEE
Confidence 6777775
No 154
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=77.74 E-value=0.62 Score=43.46 Aligned_cols=75 Identities=9% Similarity=0.204 Sum_probs=48.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHh--ccccceeEEEeecC--------ccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSI--SHHARFRSTMVSGG--------GRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
+.++||.++++..+..+++.++.. +...++++..++|+ .....+...+ .+..+|+|+|- .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 789999999999999999998875 22236788888887 4433332222 34578999993 2
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
-...+.+.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 234577888888874
No 155
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=77.71 E-value=4.6 Score=38.28 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=22.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHh
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSI 40 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~ 40 (323)
+.++.++++++||..-+.++.+.+...
T Consensus 397 ~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 397 RQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp TTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred HcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 335679999999999999999888765
No 156
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=77.48 E-value=2.4 Score=39.41 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=45.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeec--------CccCCccccc---c-C-CCCCEEEeChHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG--------GGRLRPQEDS---L-N-NPIDMVVGTPGRILQH 81 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~-~-~~~~Iii~Tp~~l~~~ 81 (323)
.++.++||.++++.-+..+++.++.......+++..++| +....++... + . +..+|+|+|-
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------ 469 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------ 469 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------
Confidence 456799999999999999999998864333366777754 4443333322 2 2 4578999992
Q ss_pred HHcCCCCCCCCcEEeecch
Q 047490 82 IEDGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIiDE~ 100 (323)
.-...+.+.++++||.=+.
T Consensus 470 v~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 470 VADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SSCCC---CCCSEEEEESC
T ss_pred hhhcCCcCccCCEEEEeCC
Confidence 2234677888999886444
No 157
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=77.44 E-value=0.88 Score=39.15 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=48.9
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHc
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~ 84 (323)
...+...++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. . -.
T Consensus 272 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~ 341 (414)
T 3eiq_A 272 CDLYETLTITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LA 341 (414)
T ss_dssp HHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC
T ss_pred HHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cc
Confidence 33344445678999999999999988888765 56788888886654443322 34568999993 2 22
Q ss_pred CCCCCCCCcEEeec
Q 047490 85 GNMVYGDIKYLVLD 98 (323)
Q Consensus 85 ~~~~~~~~~~vIiD 98 (323)
..+.+.++++||.-
T Consensus 342 ~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 342 RGIDVQQVSLVINY 355 (414)
T ss_dssp --CCGGGCSCEEES
T ss_pred cCCCccCCCEEEEe
Confidence 34566677877753
No 158
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=77.43 E-value=2.6 Score=28.46 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 46689999999988899999999998884 778888864
No 159
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.31 E-value=3.3 Score=37.07 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----ccc-c-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----ARG-L-DL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~G-i-d~ 266 (323)
+.++||.+|++..+....+.++.. +..+..++|+.+...+...+. +..+|+|+|+- + ..+ + .+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~~~~~~~~~~~~ 125 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII------EDNDIIILTPQILVNNLNNGAIPSL 125 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH------HHCSEEEECHHHHHHHHHTSSSCCG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh------cCCCEEEECHHHHHHHHhcCccccc
Confidence 679999999999888887777654 889999999986554422221 22458999852 2 122 2 45
Q ss_pred -CCCEEEE
Q 047490 267 -DVDHVIM 273 (323)
Q Consensus 267 -~~~~vi~ 273 (323)
++++||.
T Consensus 126 ~~~~~vVi 133 (555)
T 3tbk_A 126 SVFTLMIF 133 (555)
T ss_dssp GGCSEEEE
T ss_pred ccCCEEEE
Confidence 5777666
No 160
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=77.05 E-value=1.4 Score=40.68 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=21.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSIS 41 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~ 41 (323)
+.++|+.+||..-++++.+.+....
T Consensus 233 ~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 233 GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 6799999999999999999887653
No 161
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=76.78 E-value=1.2 Score=39.83 Aligned_cols=80 Identities=10% Similarity=0.152 Sum_probs=48.3
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
..+...++.++||.|+++.-+..+++.+.+. +..+..++|+.....+...+ .+..+|+|+|- .+ ..
T Consensus 350 ~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l-~~ 419 (508)
T 3fho_A 350 ELYGLLTIGQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VI-AR 419 (508)
T ss_dssp HHHC---CCCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----------
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hh-hc
Confidence 3344445679999999999998888877664 55778888887665544332 35578999994 22 34
Q ss_pred CCCCCCCcEEeecc
Q 047490 86 NMVYGDIKYLVLDE 99 (323)
Q Consensus 86 ~~~~~~~~~vIiDE 99 (323)
.+.+.++++||..+
T Consensus 420 GiDip~v~~VI~~~ 433 (508)
T 3fho_A 420 GIDVSQVNLVVNYD 433 (508)
T ss_dssp -CCCTTCCEEEC--
T ss_pred CCCccCCCEEEEEC
Confidence 56788899988644
No 162
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.72 E-value=4.7 Score=35.40 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.0
Q ss_pred CCCCCcEEeecchhhh
Q 047490 88 VYGDIKYLVLDEADTM 103 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~ 103 (323)
.+..++++|+||++.+
T Consensus 125 ~~~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 125 DLAKCRVLICDEVSMY 140 (459)
T ss_dssp CCSSCSEEEESCGGGC
T ss_pred cccCCCEEEEECchhC
Confidence 3557899999999965
No 163
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.66 E-value=3.6 Score=36.89 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----ccc-c-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----ARG-L-DL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~G-i-d~ 266 (323)
+.++||.+|++..+....+.++.. +..+..++|+.+...+...+ . ...+|+|+|+- + ..+ + .+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~i~v~T~~~l~~~~~~~~~~~~ 128 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I---EDSDIIVVTPQILVNSFEDGTLTSL 128 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHH---H---HHCSEEEECHHHHHHHHHSSSCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHh---h---CCCCEEEECHHHHHHHHHhCccccc
Confidence 678999999999888888777654 88999999998655432222 1 12458999852 2 122 3 46
Q ss_pred -CCCEEEE
Q 047490 267 -DVDHVIM 273 (323)
Q Consensus 267 -~~~~vi~ 273 (323)
+++.||.
T Consensus 129 ~~~~~vVi 136 (556)
T 4a2p_A 129 SIFTLMIF 136 (556)
T ss_dssp TTCSEEEE
T ss_pred ccCCEEEE
Confidence 6777766
No 164
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=76.62 E-value=2.8 Score=29.45 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=32.0
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 46689999999988888999999988874 778888864
No 165
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=76.07 E-value=3.2 Score=32.69 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----cc---cc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----AR---GL 264 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~---Gi 264 (323)
.+.++++.++++..+..+++.++.. +..+..++|+.....+ ...... +..+|+|+|+- + .. ++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSS--KKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSC--CCCCEEEECHHHHHHHHHSSSCSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhc--CCCCEEEECHHHHHHHHHhCCCCc
Confidence 4568999999999999998887764 5566666654221111 111122 56789999952 1 11 46
Q ss_pred CC-CCCEEEEc
Q 047490 265 DL-DVDHVIMF 274 (323)
Q Consensus 265 d~-~~~~vi~~ 274 (323)
++ +++++|.=
T Consensus 172 ~~~~~~~lViD 182 (245)
T 3dkp_A 172 DLASVEWLVVD 182 (245)
T ss_dssp CCTTCCEEEES
T ss_pred ccccCcEEEEe
Confidence 77 78877763
No 166
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.06 E-value=8.6 Score=30.67 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec-----cc--ccccC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD-----LA--ARGLD 265 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~-----~~--~~Gid 265 (323)
.+.++|+.++++..+...++.++.. +..+..++|+........ .... + .+|+|+|+ .+ ..+++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~--~-~~Iiv~Tp~~l~~~~~~~~~~~ 198 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGN--G-INIIVATPGRLLDHMQNTPGFM 198 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHH--C-CSEEEECHHHHHHHHHHCTTCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcC--C-CCEEEEcHHHHHHHHHccCCcc
Confidence 4678999999999999988877653 567778888877554432 2332 3 67999994 11 12466
Q ss_pred C-CCCEEEE
Q 047490 266 L-DVDHVIM 273 (323)
Q Consensus 266 ~-~~~~vi~ 273 (323)
+ ++..+|+
T Consensus 199 ~~~l~~lVi 207 (262)
T 3ly5_A 199 YKNLQCLVI 207 (262)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 7 7887776
No 167
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=76.00 E-value=3 Score=34.44 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=50.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.+....+.++||.+++++-+..+++.++ ++..++|+.....+...+ .+..+|+|+|. .+. ..
T Consensus 214 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~G 279 (337)
T 2z0m_A 214 ALRENKDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RG 279 (337)
T ss_dssp HHHTCCCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TT
T ss_pred HHHhCCCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cC
Confidence 3445667899999999998887766554 455677776544443322 34578999993 333 35
Q ss_pred CCCCCCcEEeecch
Q 047490 87 MVYGDIKYLVLDEA 100 (323)
Q Consensus 87 ~~~~~~~~vIiDE~ 100 (323)
+.+.++++||.-+.
T Consensus 280 id~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 280 LDIPLVEKVINFDA 293 (337)
T ss_dssp CCCCCBSEEEESSC
T ss_pred CCccCCCEEEEecC
Confidence 67788888886443
No 168
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=75.82 E-value=3.7 Score=29.58 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567999999998888899999999998 5888999875
No 169
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=75.77 E-value=2.7 Score=30.22 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCCCeEEEEecCc--ccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTL--NSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+- ..+..++..|+..|+.+..+.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 4567999999997 5788889999999999888999864
No 170
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=75.65 E-value=12 Score=29.33 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=48.4
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
....+.+..|.......+... +.++++++++...+..+.+.+++.+.. +..++|+.. ...+
T Consensus 112 ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~---------------~~~~ 173 (237)
T 2fz4_A 112 CIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK---------------ELKP 173 (237)
T ss_dssp EEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---------------CCCS
T ss_pred EEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---------------CcCC
Confidence 334455666766555555442 578999999999999999888887777 888888754 3446
Q ss_pred EEEEec
Q 047490 253 TLVCTD 258 (323)
Q Consensus 253 ilv~t~ 258 (323)
|+|+|.
T Consensus 174 i~v~T~ 179 (237)
T 2fz4_A 174 LTVSTY 179 (237)
T ss_dssp EEEEEH
T ss_pred EEEEeH
Confidence 888884
No 171
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=75.64 E-value=4.1 Score=38.67 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----ccc-c-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----ARG-L-DL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~G-i-d~ 266 (323)
+.++||.||++..+....+.++.. +..+..+||+.+...+...+ . +..+|+|+|+- + ..+ + .+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~---~~~~Ivv~Tp~~l~~~l~~~~~~~~ 369 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I---EDSDIIVVTPQILVNSFEDGTLTSL 369 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH---H---HTCSEEEECHHHHHHHHHSSSCCCG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh---h---CCCCEEEEchHHHHHHHHhcccccc
Confidence 679999999999988887777654 88999999998655432222 1 23469999952 1 122 2 45
Q ss_pred -CCCEEEE
Q 047490 267 -DVDHVIM 273 (323)
Q Consensus 267 -~~~~vi~ 273 (323)
+++.||+
T Consensus 370 ~~~~~iVi 377 (797)
T 4a2q_A 370 SIFTLMIF 377 (797)
T ss_dssp GGCSEEEE
T ss_pred ccCCEEEE
Confidence 5677765
No 172
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=75.15 E-value=9 Score=32.75 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHH 43 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 43 (323)
.++..++++.|+.+-+..+.+.++.+...
T Consensus 206 ~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 206 NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 45778999999999998888888887643
No 173
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.00 E-value=3.8 Score=31.63 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=56.8
Q ss_pred EEeccCChhHHHH-HHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC--------CCeeEEecCCCCHHHHHHHHH
Q 047490 174 FIKLSGSENKLEA-LLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN--------QISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 174 ~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~ 242 (323)
....+.+..|... ++.++.... ..+.+++|.++++..+..+++.+++. +..+..++|+.+.... .+
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~ 121 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LE 121 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TC
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HH
Confidence 4445556677654 333333222 23568999999999998888776543 5677778888653321 11
Q ss_pred hccccCCCCCEEEEecc-----ccc-ccCC-CCCEEEE
Q 047490 243 KFKNEDGDCPTLVCTDL-----AAR-GLDL-DVDHVIM 273 (323)
Q Consensus 243 ~f~~~~g~~~ilv~t~~-----~~~-Gid~-~~~~vi~ 273 (323)
.+. ...+|+|+|+- +.. .+++ +++.+|.
T Consensus 122 ~~~---~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 122 KLN---VQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CCS---SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred HcC---CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 222 45679999952 222 3456 6777665
No 174
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=74.89 E-value=3.1 Score=29.61 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 4667999999999999999999999998 5888889864
No 175
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=74.09 E-value=7.6 Score=34.04 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
....+.+..|....+..+... +.++||.||++..+....+.+++.+.. +..+||+..
T Consensus 112 ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~ 169 (472)
T 2fwr_A 112 CIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (472)
T ss_dssp EEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB
T ss_pred EEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC
Confidence 344444566765555444432 579999999999999999999888888 999999865
No 176
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=73.85 E-value=8.1 Score=31.63 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=57.3
Q ss_pred eEEeccCChhHHHH-HHHHhccCCC--CCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhc
Q 047490 173 DFIKLSGSENKLEA-LLQVLEPSLS--KGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 173 ~~~~~~~~~~k~~~-l~~~l~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f 244 (323)
.+...+.+..|... ++.++..... .+.++||.+|++..|..++..++.. +..+...+|+......
T Consensus 134 ~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 206 (300)
T 3fmo_B 134 LIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------- 206 (300)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------
T ss_pred EEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------
Confidence 34444455666644 3344443322 3347999999999999987776653 4566777776542211
Q ss_pred cccCCCCCEEEEeccc------c-cccCC-CCCEEEEc
Q 047490 245 KNEDGDCPTLVCTDLA------A-RGLDL-DVDHVIMF 274 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~------~-~Gid~-~~~~vi~~ 274 (323)
.. ...+|+|+|+-- . ..+++ ++.++|+=
T Consensus 207 ~~--~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 207 QK--ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp CC--CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred hc--CCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 12 456799999632 1 24677 78888763
No 177
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=73.85 E-value=6.1 Score=38.28 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=55.2
Q ss_pred EEeccCChhHHHHHHHHhccCCCC-----CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhc
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSK-----GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 244 (323)
....+.+..|.....-.+...... +.++||.+|+...+....+.++.. +..+..+||+.+...+...+.
T Consensus 267 ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~-- 344 (936)
T 4a2w_A 267 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI-- 344 (936)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH--
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc--
Confidence 444455666765544444333222 678999999999888887777654 889999999986544322111
Q ss_pred cccCCCCCEEEEecc-c----ccc-c-CC-CCCEEEE
Q 047490 245 KNEDGDCPTLVCTDL-A----ARG-L-DL-DVDHVIM 273 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~-~----~~G-i-d~-~~~~vi~ 273 (323)
+..+|+|+|+- + ..+ + .+ +++++|.
T Consensus 345 ----~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 345 ----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp ----HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred ----cCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 12458999852 2 112 2 44 5676665
No 178
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=73.20 E-value=3.6 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 195 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
+.+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 346679999999988888999999999885 777888754
No 179
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=73.15 E-value=8.3 Score=26.35 Aligned_cols=59 Identities=7% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCCCccEEEEcCCHHHHHH-HHHHHHHhccccceeEEEe-ecCccCCccccccCCCCCEEEeChH
Q 047490 14 KPRRPRAVVLCPTRELSEQ-VFRVAKSISHHARFRSTMV-SGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
..+..+++++|++=--..+ ++..+++.++..++.+..- .+-..... ...++|++++||+
T Consensus 18 ~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~~~DlIist~~ 78 (113)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMDGVHLICTTAR 78 (113)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STTSCSEEEESSC
T ss_pred cccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccCCCCEEEECCc
Confidence 3445689999985332222 2344444444444443222 22212111 1235899999985
No 180
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=73.12 E-value=5.5 Score=28.09 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=32.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4567999999998888889999998888 4778889874
No 181
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=72.88 E-value=13 Score=35.39 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc------------------------------------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ------------------------------------ 60 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 60 (323)
+.++++++||..-+.++.+.+.+. ++++..+.+.......
T Consensus 404 ~~~ILv~a~tn~A~d~l~~rL~~~----g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~ 479 (802)
T 2xzl_A 404 KDRILVCAPSNVAVDHLAAKLRDL----GLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSAS 479 (802)
T ss_dssp CCCEEEEESSHHHHHHHHHHHHHT----TCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHH
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhh----CccEEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHH
Q ss_pred ------------ccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCC
Q 047490 61 ------------EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128 (323)
Q Consensus 61 ------------~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~ 128 (323)
.....+..+|+++|...+. ...+.- .+++||+|||. -......++..+....
T Consensus 480 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~----~~~L~~-~fd~viIDEA~------q~~e~~~li~l~~~~~----- 543 (802)
T 2xzl_A 480 DTKRFVKLVRKTEAEILNKADVVCCTCVGAG----DKRLDT-KFRTVLIDEST------QASEPECLIPIVKGAK----- 543 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEETTGGG----CTTCCS-CCSEEEETTGG------GSCHHHHHHHHTTTBS-----
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEechhhcC----hHHHhc-cCCEEEEECcc------ccchHHHHHHHHhCCC-----
Q ss_pred CCceEEEEE
Q 047490 129 QGFQTVLVS 137 (323)
Q Consensus 129 ~~~~~i~~s 137 (323)
++++++
T Consensus 544 ---~lilvG 549 (802)
T 2xzl_A 544 ---QVILVG 549 (802)
T ss_dssp ---EEEEEE
T ss_pred ---EEEEEe
No 182
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=71.76 E-value=4.9 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45679999999988888999999999886667788865
No 183
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.42 E-value=8.4 Score=35.31 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=46.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||.++++.-+..+++.+++. +.++..++|+.........-.+..+|+|+|. .+.. .+.+. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEEE
Confidence 558999999999999999999876 5578888875222111111234578999993 3443 44554 77764
No 184
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=71.03 E-value=5.6 Score=25.28 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=29.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
++..++++||.+-..+...+..|+..|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45679999999988888999999998875 5555 7654
No 185
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=68.99 E-value=14 Score=33.40 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=18.3
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
...++++|+||++.+. ...+..++..++
T Consensus 277 ~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp CCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 3467899999999753 244555555444
No 186
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=68.74 E-value=3.2 Score=29.42 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+..++..|+..|+. +..+.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 35679999999988888899999998885 888888854
No 187
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=68.37 E-value=4.3 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45679999999988888999999999885 778888854
No 188
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.07 E-value=4.5 Score=30.97 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=24.9
Q ss_pred CcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 92 IKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
-.++|+||||.+.... .......++..+.... ...+++|++|..+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----~~~~~iil~tq~~ 133 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----HQGIDIFVLTQGP 133 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----TTTCEEEEEESCG
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcC----cCCeEEEEECCCH
Confidence 5589999999984321 1111123444443322 1245888888773
No 189
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.61 E-value=23 Score=29.82 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=57.9
Q ss_pred EEeccCChhHHHH-HHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 174 FIKLSGSENKLEA-LLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 174 ~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
....+.+..|... ++.++.... ..+.++|+.++++..+..+++.++. .+..+..++|+.+..+....+. .
T Consensus 62 lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~ 138 (394)
T 1fuu_A 62 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR---D 138 (394)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---H
T ss_pred EEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---C
Confidence 4445556677654 322232211 2456999999999999888777654 3678888999988666554433 2
Q ss_pred cCCCCCEEEEecc-c----c-cccCC-CCCEEEE
Q 047490 247 EDGDCPTLVCTDL-A----A-RGLDL-DVDHVIM 273 (323)
Q Consensus 247 ~~g~~~ilv~t~~-~----~-~Gid~-~~~~vi~ 273 (323)
.+|+|+|.- + . ..+.+ +++.||.
T Consensus 139 ----~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 139 ----AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp ----CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ----CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 348999842 1 1 12345 6666665
No 190
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=66.25 E-value=35 Score=25.13 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=54.1
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
..-...+.+.+.......+.+-|.|++...+..+.+.|...++++..+.++-. .+. -.|.|.|--.
T Consensus 44 ~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~-----~~v~v~t~~~ 109 (174)
T 3dmn_A 44 EAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA-----PGVIVVPSFL 109 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC-----SSEEEEEGGG
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC-----CCeEEEEccc
Confidence 33344444444331123567889999999999999999988888776665421 122 2588999888
Q ss_pred ccccCCCCCEEEEcCCC
Q 047490 261 ARGLDLDVDHVIMFDFP 277 (323)
Q Consensus 261 ~~Gid~~~~~vi~~~~p 277 (323)
..|+. .+.||.+++.
T Consensus 110 ~KGlE--f~~V~~~~~~ 124 (174)
T 3dmn_A 110 AKGLE--FDAVIVWNAN 124 (174)
T ss_dssp CTTCC--EEEEEEETCB
T ss_pred cCCcC--CCEEEEecCC
Confidence 89987 5566776643
No 191
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=65.38 E-value=12 Score=36.89 Aligned_cols=72 Identities=18% Similarity=0.077 Sum_probs=51.9
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
+...+.+..|.....-.+......+.++++.+|++..+...++.+++....+..++|+.+ .+ +..+|
T Consensus 203 LV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~--~~~~I 269 (1108)
T 3l9o_A 203 LVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------IN--PDAGC 269 (1108)
T ss_dssp EEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CC--CSCSE
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cC--CCCCE
Confidence 444455666765444333333356789999999999999999999886668899999876 12 55678
Q ss_pred EEEec
Q 047490 254 LVCTD 258 (323)
Q Consensus 254 lv~t~ 258 (323)
+|+|+
T Consensus 270 lV~Tp 274 (1108)
T 3l9o_A 270 LVMTT 274 (1108)
T ss_dssp EEEEH
T ss_pred EEeCh
Confidence 99983
No 192
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=65.12 E-value=11 Score=34.76 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.++||.+++++-+.++++.+++. ++++..++|+....... .++.+|+|+|. .+.++ +.++ +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er~---~~~~~VLVATd-----VaerG-IDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVIP---TIGDVVVVATD-----ALMTG-YTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGSC---SSSCEEEEECT-----THHHH-CCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHHH---hCCCcEEEECC-----hHHcc-CCCC-CcEE
Confidence 4679999999999999999988875 66888999987654322 34458999993 33332 3344 7777
Q ss_pred e
Q 047490 96 V 96 (323)
Q Consensus 96 I 96 (323)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 7
No 193
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=64.92 E-value=17 Score=34.45 Aligned_cols=75 Identities=13% Similarity=0.012 Sum_probs=49.1
Q ss_pred EeccCChhHHHH-HHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 175 IKLSGSENKLEA-LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 175 ~~~~~~~~k~~~-l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
.....+..|.-. ++.++... -.+.+++|.++|+..|...++.+.. .+..+..+.|+++...+....
T Consensus 92 aem~TGsGKTlaf~LP~l~~~-l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~-------- 162 (853)
T 2fsf_A 92 AEMRTGEGKTLTATLPAYLNA-LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY-------- 162 (853)
T ss_dssp EECCTTSCHHHHHHHHHHHHH-TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH--------
T ss_pred eeecCCchHHHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc--------
Confidence 334445555543 33333221 1456899999999999887766544 488999999999876544321
Q ss_pred CCCEEEEec
Q 047490 250 DCPTLVCTD 258 (323)
Q Consensus 250 ~~~ilv~t~ 258 (323)
.+.|+++|+
T Consensus 163 ~~dIvvgTp 171 (853)
T 2fsf_A 163 AADITYGTN 171 (853)
T ss_dssp HSSEEEEEH
T ss_pred CCCEEEECC
Confidence 256999996
No 194
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=64.78 E-value=68 Score=29.22 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=26.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEe
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNY 228 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 228 (323)
.+.+.|.+++...+..+...|.+.++++...
T Consensus 347 ~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~ 377 (647)
T 3lfu_A 347 LAECAILYRSNAQSRVLEEALLQASMPYRIY 377 (647)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEES
T ss_pred ccCEEEEEeCchhHHHHHHHHHHCCCCEEEe
Confidence 3678899999999999999999999887654
No 195
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=64.32 E-value=8.8 Score=35.60 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=51.5
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc---ccccC---CCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ---EDSLN---NPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 20 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
.+++++++.-+.++++.+++. +..+..++|+.....+ ...+. +..+|+|+|. .+. ..+.+ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Ccc
Confidence 355689998888888888874 5688999999776532 22233 4479999993 333 45667 899
Q ss_pred EEeecchhh
Q 047490 94 YLVLDEADT 102 (323)
Q Consensus 94 ~vIiDE~h~ 102 (323)
+||.-....
T Consensus 392 ~VI~~~~~k 400 (677)
T 3rc3_A 392 RIIFYSLIK 400 (677)
T ss_dssp EEEESCSBC
T ss_pred EEEECCccc
Confidence 999877754
No 196
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=63.39 E-value=6.1 Score=38.43 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=60.0
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCC--CCEEEeChHHHHHHH
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNP--IDMVVGTPGRILQHI 82 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~Iii~Tp~~l~~~~ 82 (323)
...+...++.++||.|+++.-+..+.+.++.. .++++..++|+.....+...+ .+. ++|+|+|. .
T Consensus 495 ~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v- 565 (968)
T 3dmq_A 495 MGYLTSHRSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----I- 565 (968)
T ss_dssp HHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----C-
T ss_pred HHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----h-
Confidence 33334456789999999999998888888753 267899999987765554332 233 89999992 1
Q ss_pred HcCCCCCCCCcEEeecchh
Q 047490 83 EDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h 101 (323)
-...+.+.+++.||+-+..
T Consensus 566 ~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp TTCSSCCTTCCEEECSSCC
T ss_pred hhcCCCcccCcEEEEecCC
Confidence 2345778889999987765
No 197
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=63.36 E-value=14 Score=32.73 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=57.8
Q ss_pred EEeccCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 174 FIKLSGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
....+.+..|....+..+.... ....++||.+|+...+....+.++.. +..+..++|+.+..++ ..
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~-- 202 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YK-- 202 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GC--
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cc--
Confidence 4444556667655444443322 23349999999999999999888765 2367888888775543 23
Q ss_pred CCCCEEEEecc-cccc--cCC-CCCEEEE
Q 047490 249 GDCPTLVCTDL-AARG--LDL-DVDHVIM 273 (323)
Q Consensus 249 g~~~ilv~t~~-~~~G--id~-~~~~vi~ 273 (323)
+..+|+|+|.- +... ..+ +++.||.
T Consensus 203 ~~~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp TTCSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred cCCcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 66789999953 2222 234 5665555
No 198
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=60.94 E-value=16 Score=34.05 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccc--------------------------------cceeEEEeecCccCCccccc
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHH--------------------------------ARFRSTMVSGGGRLRPQEDS 63 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 63 (323)
++..+||.+|++.-+.++++.+.+.... ....+..++|+....++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 4679999999999999999999876432 01247778888766554433
Q ss_pred c----CCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 64 L----NNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 64 ~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
. .+...|+|+|. .+ ...+.+..+++||-+
T Consensus 331 ~~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEECh-----HH-hcccCCCceEEEEeC
Confidence 2 35578999993 22 345667788776643
No 199
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=60.01 E-value=26 Score=21.91 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHhccCCCCCCeEEEEecCcc--cHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHH
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLN--SSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 242 (323)
.+.++++.-.+.+.|.+||++... .+.++...-++.|....++.+.-|.+..+.+.+
T Consensus 39 dirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvre 97 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVRE 97 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHH
Confidence 344445444568899999998754 344454445555777677777655444444433
No 200
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.78 E-value=39 Score=29.48 Aligned_cols=93 Identities=9% Similarity=0.058 Sum_probs=54.9
Q ss_pred eeEEeccCChhHHHH-HHHHhccCCC--CCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHh
Q 047490 172 HDFIKLSGSENKLEA-LLQVLEPSLS--KGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~-l~~~l~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
..+...+.+..|... ++.++..... .+.++||.+|++..+..+++.++.. +..+....++.... .
T Consensus 133 ~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 205 (479)
T 3fmp_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------R 205 (479)
T ss_dssp EEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------T
T ss_pred cEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------c
Confidence 344555556777765 3444433322 2238999999999999887766542 44555555543311 1
Q ss_pred ccccCCCCCEEEEecccc-------cccCC-CCCEEEE
Q 047490 244 FKNEDGDCPTLVCTDLAA-------RGLDL-DVDHVIM 273 (323)
Q Consensus 244 f~~~~g~~~ilv~t~~~~-------~Gid~-~~~~vi~ 273 (323)
... ...+|+|+|+-.- ..+++ ++..+|+
T Consensus 206 ~~~--~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 206 GQK--ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp TCC--CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred ccc--CCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 112 4457999996322 24667 7887776
No 201
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=59.46 E-value=28 Score=31.67 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=44.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccc--eeEEEeecCccCCccccccCCCCCEEEe--ChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPIDMVVG--TPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~--Tp~~l~~~~~~~~~~~~ 90 (323)
.++..++++.|+.+.+.++.+.++.+..... +....... ... ...+.++..|.+. +|..+.- .
T Consensus 206 ~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~---~~~-~i~~~nGs~i~~~s~~~~~lrG---------~ 272 (592)
T 3cpe_A 206 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEW---NKG-SIELDNGSSIGAYASSPDAVRG---------N 272 (592)
T ss_dssp SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEE---CSS-EEEETTSCEEEEEECCHHHHHH---------S
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhccccccC---Ccc-EEEecCCCEEEEEeCCCCCccC---------C
Confidence 3467899999999999999998888875532 11000000 011 1112344444433 2443322 1
Q ss_pred CCcEEeecchhhhh
Q 047490 91 DIKYLVLDEADTMF 104 (323)
Q Consensus 91 ~~~~vIiDE~h~~~ 104 (323)
+.+++|+||+|..-
T Consensus 273 ~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 273 SFAMIYIEDCAFIP 286 (592)
T ss_dssp CCSEEEEETGGGCT
T ss_pred CcceEEEehhccCC
Confidence 46789999999653
No 202
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.54 E-value=30 Score=32.89 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=49.0
Q ss_pred eccCChhHHHH-HHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 176 KLSGSENKLEA-LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 176 ~~~~~~~k~~~-l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
....++.|.-. ++.++...+ .+..++|.++|+..|...++.+.. .+..+..+.|+++..++... + .
T Consensus 102 ea~TGeGKTlaf~LP~~l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~---~-----~ 172 (844)
T 1tf5_A 102 EMKTGEGKTLTSTLPVYLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREA---Y-----A 172 (844)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHH---H-----H
T ss_pred EccCCcHHHHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh---c-----C
Confidence 34445555433 333331211 356899999999999988776644 58899999999987665432 1 2
Q ss_pred CCEEEEec
Q 047490 251 CPTLVCTD 258 (323)
Q Consensus 251 ~~ilv~t~ 258 (323)
+.|+++|+
T Consensus 173 ~dIv~gTp 180 (844)
T 1tf5_A 173 ADITYSTN 180 (844)
T ss_dssp SSEEEEEH
T ss_pred CCEEEECc
Confidence 46999996
No 203
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=57.00 E-value=68 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=17.4
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhcc
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKN 121 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~ 121 (323)
.++++|++||++-+. .+..++..+..
T Consensus 89 ~~~dvViIDEaQF~~------~v~el~~~l~~ 114 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP------DIVEFCEAMAN 114 (234)
T ss_dssp TTCSEEEESSGGGCT------THHHHHHHHHH
T ss_pred ccCCEEEEEchhhhh------hHHHHHHHHHh
Confidence 468999999999552 25555555443
No 204
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=56.52 E-value=10 Score=35.42 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=51.8
Q ss_pred eeEEeccCChhHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 172 HDFIKLSGSENKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
......+.+..|.... +.++......+.++++.+|++..+...++.++. .+..+..++|+.....+. .
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~- 112 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------L- 112 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------G-
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------c-
Confidence 3445555566666433 333322222467999999999999999988753 378899999987654321 1
Q ss_pred CCCCCEEEEec
Q 047490 248 DGDCPTLVCTD 258 (323)
Q Consensus 248 ~g~~~ilv~t~ 258 (323)
+..+|+|+|+
T Consensus 113 -~~~~Iiv~Tp 122 (720)
T 2zj8_A 113 -GKYDIIIATA 122 (720)
T ss_dssp -GGCSEEEECH
T ss_pred -CCCCEEEECH
Confidence 3457899986
No 205
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=56.40 E-value=14 Score=29.80 Aligned_cols=37 Identities=8% Similarity=0.052 Sum_probs=29.8
Q ss_pred CCCCeEEEEecCccc-HHHHHHHHhhCCC-eeEEecCCC
Q 047490 196 SKGNKVMVFCNTLNS-SRAVDHFLNENQI-STVNYHGEV 232 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~-~~~l~~~l~~~~~-~~~~~~~~~ 232 (323)
.+..++++||.+-.. +..++..|+..|+ .+..+.|++
T Consensus 84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 456899999998665 8888899999888 577787764
No 206
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=56.09 E-value=15 Score=29.49 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|...|+ .+..+.|++.
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 4667999999999999999999999998 4888999986
No 207
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.48 E-value=10 Score=28.74 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=43.6
Q ss_pred EEeccCChhHHHHHHHHhccCC------CCCCeEEEEecCcccHHH-HHHHHhh---CCCeeEEecCCCCHHHHHHHHHh
Q 047490 174 FIKLSGSENKLEALLQVLEPSL------SKGNKVMVFCNTLNSSRA-VDHFLNE---NQISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~------~~~~~~lvf~~~~~~~~~-l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
....+.+..|.......+.... ..+.++++.|++...+.. +.+.++. .+..+..++|+.....+...+.
T Consensus 52 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~- 130 (216)
T 3b6e_A 52 IICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV- 130 (216)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH-
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc-
Confidence 3444555566544433332211 235799999999988777 5555544 3678888888765332221111
Q ss_pred ccccCCCCCEEEEec
Q 047490 244 FKNEDGDCPTLVCTD 258 (323)
Q Consensus 244 f~~~~g~~~ilv~t~ 258 (323)
...+|+|+|.
T Consensus 131 -----~~~~i~v~T~ 140 (216)
T 3b6e_A 131 -----KSCDIIISTA 140 (216)
T ss_dssp -----HHCSEEEEEH
T ss_pred -----cCCCEEEECH
Confidence 1245899985
No 208
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=54.93 E-value=10 Score=27.61 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCeEEEEecCcc---------cHHHHHHHHhhCCCeeEEecCCCC
Q 047490 198 GNKVMVFCNTLN---------SSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 198 ~~~~lvf~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
..++++||.+-. .+..++..|...|+.+..+.|++.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 579999999974 477788899988999988999853
No 209
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=54.43 E-value=35 Score=32.83 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=50.1
Q ss_pred EeccCChhHHHH-HHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 175 IKLSGSENKLEA-LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 175 ~~~~~~~~k~~~-l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
.....++.|.-. ++.++...+ .+.+++|.++|+..|...++.+.. .+..+..+.|+++..++....
T Consensus 97 aeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay-------- 167 (997)
T 2ipc_A 97 AEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY-------- 167 (997)
T ss_dssp EECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH--------
T ss_pred eeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc--------
Confidence 334445666543 233322211 456899999999988877766543 589999999999976665432
Q ss_pred CCCEEEEecc
Q 047490 250 DCPTLVCTDL 259 (323)
Q Consensus 250 ~~~ilv~t~~ 259 (323)
.++|+++|+.
T Consensus 168 ~~DIvyGTpg 177 (997)
T 2ipc_A 168 LADVTYVTNS 177 (997)
T ss_dssp TSSEEEEEHH
T ss_pred CCCEEEECch
Confidence 2568999863
No 210
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=53.97 E-value=8.7 Score=26.05 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=30.8
Q ss_pred CCCccEEEEcCCHHHHHHHHH-HHHHhcccccee-EEEeecCccCCccccccCCCCCEEEeChH
Q 047490 15 PRRPRAVVLCPTRELSEQVFR-VAKSISHHARFR-STMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
.+..+++++|++=--...+.. .+++.++..++. +..-..+...- ... ..++|++++||+
T Consensus 16 ~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~--~~~-~~~~DlIi~t~~ 76 (110)
T 3czc_A 16 GSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEA--KGL-ASNYDIVVASNH 76 (110)
T ss_dssp --CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHH--HHH-GGGCSEEEEETT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHH--hhc-cCCCcEEEECCc
Confidence 334679999996544444444 566666555554 32222221111 111 234799999986
No 211
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=53.84 E-value=18 Score=31.91 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=46.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFD 275 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~ 275 (323)
+.++++.|.+...++.+.+.|.+.++.+....+. ..+.. |. +.++...+..|+.+ ....+++.+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~--g~--v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASD--RG--RYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCT--TC--EEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCC--Cc--EEEEEcccccCcccCCCCEEEEEc
Confidence 5689999999999999999999887765433221 11222 54 67778889999998 778887753
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=53.51 E-value=20 Score=27.22 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 147 (323)
..+++||+||+-.....++-+ ...++..+.... ....+|+.+..+++++.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~-~~ev~~~l~~Rp-----~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLP-LEEVISALNARP-----GHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSC-HHHHHHHHHTSC-----TTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCC-HHHHHHHHHhCc-----CCCEEEEECCCCcHHHHHh
Confidence 679999999998766555332 223333333221 1236666666667666553
No 213
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=52.40 E-value=17 Score=35.53 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=47.5
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
+...+.+..|.....-.+......+.++++.+|++..+...++.|+.....+..++|+.+.. ...+|
T Consensus 105 LV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-------------~~~~I 171 (1010)
T 2xgj_A 105 LVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-------------PDAGC 171 (1010)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-------------TTCSE
T ss_pred EEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-------------CCCCE
Confidence 33444455565433222222224678999999999999999888877644788899986521 34568
Q ss_pred EEEec
Q 047490 254 LVCTD 258 (323)
Q Consensus 254 lv~t~ 258 (323)
+|+|+
T Consensus 172 vV~Tp 176 (1010)
T 2xgj_A 172 LVMTT 176 (1010)
T ss_dssp EEEEH
T ss_pred EEEcH
Confidence 88885
No 214
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.61 E-value=20 Score=27.56 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=30.5
Q ss_pred eeEEEeecCccCCccc--cc-----cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhc
Q 047490 46 FRSTMVSGGGRLRPQE--DS-----LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~-----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 105 (323)
.....++|........ .. ...+..+++.+...+...+......+....++|+||+|.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccC
Confidence 3566677765443321 00 112345555555444332221112234567999999998754
No 215
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.46 E-value=88 Score=24.67 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
.+.+.+++.. .+.+.-|||.+...|.-+.+.+++.|..
T Consensus 176 ~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 176 VDAAKKLMKL---KNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHTTS---SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcC---CCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 3455555553 3457789999999888888888887653
No 216
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=50.13 E-value=32 Score=33.60 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=38.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
..+.+++|.+|++..+...++.+++. +..+..++|+.+. . +..+|+|+|+
T Consensus 80 ~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~--~~~~IlV~Tp 131 (997)
T 4a4z_A 80 RNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------N--PDANCLIMTT 131 (997)
T ss_dssp HTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------C--TTSSEEEEEH
T ss_pred hcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------C--CCCCEEEECH
Confidence 35679999999999999999999875 5688899998641 2 4456777774
No 217
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=49.67 E-value=43 Score=32.05 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=41.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.+++|.++|+..|...++.+.. .|..+..+.|+++..++.... .+.|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y--------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY--------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH--------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc--------CCCEEEECc
Confidence 356899999999999877776644 589999999999976654322 246999996
No 218
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=49.45 E-value=20 Score=33.31 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=58.8
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
......+.+..|.....-.+.+....+.++++.+|++..+...++.++. .+..+..++|+....++ ..
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~-- 112 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HL-- 112 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CS--
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hc--
Confidence 3345555566676544322222222467999999999999999888743 36788899998764332 12
Q ss_pred CCCCEEEEec-----ccccccC-C-CCCEEEE
Q 047490 249 GDCPTLVCTD-----LAARGLD-L-DVDHVIM 273 (323)
Q Consensus 249 g~~~ilv~t~-----~~~~Gid-~-~~~~vi~ 273 (323)
+..+|+|+|+ .+..+-. + ++++||.
T Consensus 113 ~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 113 GDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred cCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 4667999996 2222323 5 6777665
No 219
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=49.16 E-value=14 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|..+..+.|++.
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 45679999999999999999999988877888888754
No 220
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=48.13 E-value=23 Score=28.45 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=50.9
Q ss_pred eccCChhHHHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhCCC----eeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 176 KLSGSENKLEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNENQI----STVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
..+.+..|.......+..... ...++|+.++++..+....+.++..+. .+..++++..... -.. +.
T Consensus 134 ~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~ 204 (282)
T 1rif_A 134 NLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYK--ND 204 (282)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCC--TT
T ss_pred EcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhc--cC
Confidence 334455565544433332222 334999999999999988888876532 4556666654322 111 45
Q ss_pred CCEEEEecc-cccc--cCC-CCCEEEE
Q 047490 251 CPTLVCTDL-AARG--LDL-DVDHVIM 273 (323)
Q Consensus 251 ~~ilv~t~~-~~~G--id~-~~~~vi~ 273 (323)
.+|+|+|.- +... ..+ +++.||.
T Consensus 205 ~~I~v~T~~~l~~~~~~~~~~~~~vIi 231 (282)
T 1rif_A 205 APVVVGTWQTVVKQPKEWFSQFGMMMN 231 (282)
T ss_dssp CSEEEECHHHHTTSCGGGGGGEEEEEE
T ss_pred CcEEEEchHHHHhhHHHHHhhCCEEEE
Confidence 679999953 2211 124 5666655
No 221
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=47.47 E-value=12 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC-------CCeeEEecCCCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN-------QISTVNYHGEVP 233 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~ 233 (323)
..++++||.+-..+...+..|... ...+..+.|++.
T Consensus 72 ~~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 72 AVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 458999999988888888888877 346778888864
No 222
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=46.47 E-value=21 Score=29.40 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCCCeEEEEecCcc-cHHHHHHHHhhCCC-eeEEecCCC
Q 047490 196 SKGNKVMVFCNTLN-SSRAVDHFLNENQI-STVNYHGEV 232 (323)
Q Consensus 196 ~~~~~~lvf~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 232 (323)
.+..+++|||.+-. .+..++..|+..|+ .+..+.|++
T Consensus 109 ~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 109 ARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp CTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 46689999999866 68888889998888 478888764
No 223
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=46.37 E-value=23 Score=28.49 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHh-hCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLN-ENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~-~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+ ..|+ .+..+.|++.
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 466899999999888888888898 7888 6888888853
No 224
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=46.25 E-value=42 Score=21.74 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=49.3
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC--CCCCEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED--GDCPTL 254 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--g~~~il 254 (323)
+.+.......+...+.. .+-.+ ..+.+...+ .+.+....+.+.++.-.++...-.+.++..++.. ....++
T Consensus 7 v~~~~~~~~~l~~~l~~---~g~~v-~~~~~~~~~---~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 7 LEEEDEAATVVCEMLTA---AGFKV-IWLVDGSTA---LDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp ECCCHHHHHHHHHHHHH---TTCEE-EEESCHHHH---HHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred EeCCHHHHHHHHHHHHh---CCcEE-EEecCHHHH---HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 33344444555565653 23333 344443333 3344444566666665555433344455554421 334556
Q ss_pred EEecccccccCC---CCCEEEEcCCCCCchhhhhhhccc
Q 047490 255 VCTDLAARGLDL---DVDHVIMFDFPLNSIDYLHRTGRT 290 (323)
Q Consensus 255 v~t~~~~~Gid~---~~~~vi~~~~p~s~~~~~Q~~GR~ 290 (323)
+.|...... .. .++.+ ...|.+..++.+++.++
T Consensus 80 ~~~~~~~~~-~~~~~g~~~~--l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 80 LFLGEPPVD-PLLTAQASAI--LSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp EEESSCCSS-HHHHHHCSEE--CSSCSTTHHHHHHHHTT
T ss_pred EEeCCCCch-hhhhcCHHHh--ccCCCCHHHHHHHHHHH
Confidence 555432222 21 23322 23566777777766554
No 225
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=45.80 E-value=20 Score=28.60 Aligned_cols=37 Identities=8% Similarity=-0.034 Sum_probs=29.1
Q ss_pred CCCCeEEEEecCcc-cHHHHHHHHhhCCC-eeEEecCCC
Q 047490 196 SKGNKVMVFCNTLN-SSRAVDHFLNENQI-STVNYHGEV 232 (323)
Q Consensus 196 ~~~~~~lvf~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 232 (323)
.+..++++||.+-. .+..++..|+..|+ .+..+.|++
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 35679999999866 77888888998888 477777764
No 226
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=45.27 E-value=1.1e+02 Score=24.06 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
-...+.+++.. .+.+.-|||.+...+.-+.+.+++.|..
T Consensus 179 ~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 179 GQQAVEELMGL---QQPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHTS---SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcC---CCCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 34455566654 3457789999988888888888887653
No 227
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=45.27 E-value=42 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.4
Q ss_pred ChHHHHHHHHcCCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+.+..+.++++.++-+||--
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 7888888877777889999999999954
No 228
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=44.79 E-value=19 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.8
Q ss_pred CCCcEEeecchhhh
Q 047490 90 GDIKYLVLDEADTM 103 (323)
Q Consensus 90 ~~~~~vIiDE~h~~ 103 (323)
.+.++|++||+|.+
T Consensus 75 ~~~dvviIDE~Q~~ 88 (184)
T 2orw_A 75 EDTRGVFIDEVQFF 88 (184)
T ss_dssp TTEEEEEECCGGGS
T ss_pred CCCCEEEEECcccC
Confidence 36789999999975
No 229
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=44.20 E-value=1.1e+02 Score=23.90 Aligned_cols=188 Identities=7% Similarity=0.026 Sum_probs=85.4
Q ss_pred ccccCCCCccEEEEcCCH--HHHHHHHHHHHHhcccccee-EEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHH
Q 047490 10 GVLMKPRRPRAVVLCPTR--ELSEQVFRVAKSISHHARFR-STMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~--~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~ 82 (323)
+.+...+...+-+++|.. .-..++.+-+++.....+.. +.....+.+...+.. ....+++=+|..|+.+
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---- 78 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFTI---- 78 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCCC----
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchHH----
Confidence 445566667777888863 34455566666666666777 555554443322221 1234455444444111
Q ss_pred HcCCCCCCCCcEEeecch-hh----hhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHHHhcCce
Q 047490 83 EDGNMVYGDIKYLVLDEA-DT----MFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDEECQGIA 156 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~-h~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~ 156 (323)
....-..+-+|.+|.. -. .+..........+...+. . + ..++.+++...... .......+.....
T Consensus 79 --~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~-~----G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~ 149 (277)
T 3hs3_A 79 --PPNFHLNTPLVMYDSANINDDIVRIVSNNTKGGKESIKLLS-K----K--IEKVLIQHWPLSLPTIRERIEAMTAEAS 149 (277)
T ss_dssp --CTTCCCSSCEEEESCCCCCSSSEEEEECHHHHHHHHHHTSC-T----T--CCEEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred --HHHHhCCCCEEEEcccccCCCCEEEEEChHHHHHHHHHHHH-h----C--CCEEEEEeCCCcCccHHHHHHHHHHHHH
Confidence 1122335667777644 10 111112223333344443 1 1 12677776654322 1222222111100
Q ss_pred eeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 157 HLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
. ... ..... . ...... .+.+.+++.. .+.+.-|||.+...|.-+.+.+++.|..
T Consensus 150 ~-------~g~-~~~~~-~-~~~~~~-~~~~~~~l~~---~~~~~ai~~~~d~~A~g~~~al~~~g~~ 203 (277)
T 3hs3_A 150 K-------LKI-DYLLE-E-TPENNP-YISAQSALNK---SNQFDAIITVNDLYAAEIIKEAKRRNLK 203 (277)
T ss_dssp H-------TTC-EEEEE-E-CCSSCH-HHHHHHHHHT---GGGCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred H-------CCC-CCCCC-C-ccCCch-HHHHHHHHcC---CCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 0 000 00010 1 111111 4555555553 2457789999988888888888887653
No 230
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=44.12 E-value=70 Score=21.41 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=31.1
Q ss_pred CCeEEEEe------cCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHH
Q 047490 198 GNKVMVFC------NTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 198 ~~~~lvf~------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 242 (323)
..+++||. ++...|..+.+.|.+.+.....+.=..++..++.+.+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 35899999 5677899999999998876665543334444444433
No 231
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=43.33 E-value=89 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.1
Q ss_pred cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 208 LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 208 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
...++.+.+.|+..++.|. .+.+++..+..+.+++|.+
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 4577889999999999985 4667888888899998865
No 232
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=43.06 E-value=25 Score=29.90 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=19.3
Q ss_pred CCcEEeecchhhhhcCC---ChhhHHHHHhhhcc
Q 047490 91 DIKYLVLDEADTMFDRG---FGPDIRKFLVPLKN 121 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~---~~~~~~~i~~~~~~ 121 (323)
.-.++|+||+|.+.... ....+..++...+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk 295 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK 295 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh
Confidence 35689999999998632 22334455544443
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=42.95 E-value=10 Score=27.26 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=18.6
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
+.+.+++|+||.+.+.... ...+..++..+.
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~ 111 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFR 111 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHH
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHH
Confidence 3457899999999754322 334444444443
No 234
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=42.89 E-value=20 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4668999999998888888999999998 4888888753
No 235
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=42.80 E-value=1.2e+02 Score=23.71 Aligned_cols=185 Identities=7% Similarity=-0.056 Sum_probs=83.9
Q ss_pred CCCccEEEEcCCHH--HHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 15 PRRPRAVVLCPTRE--LSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 15 ~~~~~~lvl~P~~~--L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
.+...+-+++|... -..++.+-+++.....+..+.....+ +...+... ...+++-+|..+..-...+..
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~---- 77 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGIIIAQDIPDFTVPD---- 77 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEEEESCC-----------
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEEecCCCChhhHhh----
Confidence 34556667777533 34666666777777778787777766 43333222 234555444222111111111
Q ss_pred CCCCcEEeecchh-h---h--hcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc
Q 047490 89 YGDIKYLVLDEAD-T---M--FDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST 162 (323)
Q Consensus 89 ~~~~~~vIiDE~h-~---~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 162 (323)
..+-+|++|... . + +..........+...+.... ..++.+++..... .......+.......
T Consensus 78 -~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G------~~~i~~i~~~~~~-~~~R~~gf~~~l~~~---- 145 (280)
T 3gyb_A 78 -SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLG------HTHIAHLRVGSGA-GLRRFESFEATMRAH---- 145 (280)
T ss_dssp --CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTT------CCSEEEECCSSHH-HHHHHHHHHHHHHHT----
T ss_pred -cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCC------CCeEEEEeCCCch-HHHHHHHHHHHHHHc----
Confidence 455566666433 1 0 11111222333333333321 1267777766543 322222222111100
Q ss_pred cccccccceeeEEeccCC-hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC
Q 047490 163 LHKKIASARHDFIKLSGS-ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223 (323)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 223 (323)
.. .....+...... +.-...+.+++.. .+.+..|||.+...|.-+.+.+++.|.
T Consensus 146 ---~~-~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~ 200 (280)
T 3gyb_A 146 ---GL-EPLSNDYLGPAVEHAGYTETLALLKE---HPEVTAIFSSNDITAIGALGAARELGL 200 (280)
T ss_dssp ---TC-CCEECCCCSCCCHHHHHHHHHHHHHH---CTTCCEEEESSHHHHHHHHHHHHHHTC
T ss_pred ---Cc-CCCcccccCCCCHHHHHHHHHHHHhC---CCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 00 000001111111 2233444555544 345778999998888888888887654
No 236
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=42.55 E-value=26 Score=26.53 Aligned_cols=59 Identities=5% Similarity=-0.004 Sum_probs=36.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCcc--CCccccccCCCCCEEEeChHHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGR--LRPQEDSLNNPIDMVVGTPGRILQ 80 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Iii~Tp~~l~~ 80 (323)
+.++++++|+..|..-..+.+.++.. .+....++.+ .....+. ..+++|+|+--..-..
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~----~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgta~~ 64 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNF----IPITKTASLTRASKIAFGL-QDEVDAIISRGATSDY 64 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTC----EEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCC----ceEEEECCHHHHHHHHHHh-cCCCeEEEECChHHHH
Confidence 45899999999998866665555422 3333444432 1222233 5678998887665543
No 237
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=41.77 E-value=25 Score=28.36 Aligned_cols=49 Identities=6% Similarity=-0.024 Sum_probs=42.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.+.+||+.+....++.+.+.|+..|+.|.. +.+++..+..+.+++|.+
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 3468899999999999999999999998765 567888999999998875
No 238
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=40.24 E-value=33 Score=31.53 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=44.8
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEE
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN 227 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 227 (323)
..+.-+++..|...+.+++.+....+.++|+.++|...+..+.+.|...+..+..
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilR 262 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILR 262 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEE
Confidence 3455566788988888888777778899999999999999999999877666544
No 239
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=39.94 E-value=41 Score=26.27 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=23.4
Q ss_pred ChHHHHHHHHcCCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+....+.++++.++-+||--
T Consensus 45 tp~~~y~~L~~~~i~w~~v~~f~~DEr~ 72 (232)
T 3lhi_A 45 SPIAFFNALSQKDLDWKNVGITLADERI 72 (232)
T ss_dssp TTHHHHHHHHTSCCCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchheEEEEeeecc
Confidence 7888888777777889999999999954
No 240
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=39.86 E-value=1.3e+02 Score=23.26 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=17.7
Q ss_pred EEEeChHHHHHHHHcCCCCCCCCcEEeecchhh
Q 047490 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADT 102 (323)
Q Consensus 70 Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~ 102 (323)
+.+..+..+...+ ..++++|+|||++-
T Consensus 86 ~~v~~~~di~~~i------~~~~dvV~IDEaQF 112 (219)
T 3e2i_A 86 INISKASEIMTHD------LTNVDVIGIDEVQF 112 (219)
T ss_dssp EEESSGGGGGGSC------CTTCSEEEECCGGG
T ss_pred EEeCCHHHHHHHH------hcCCCEEEEechhc
Confidence 5566655443321 25788999999994
No 241
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=39.82 E-value=31 Score=27.99 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=31.8
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 46689999999988888888889988885 788888854
No 242
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=39.30 E-value=18 Score=29.10 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.++.++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4668999999999999999999998888 5888889865
No 243
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=38.82 E-value=22 Score=28.62 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCcc-cHHHHHHHHhhCCC-eeEEecCCC
Q 047490 196 SKGNKVMVFCNTLN-SSRAVDHFLNENQI-STVNYHGEV 232 (323)
Q Consensus 196 ~~~~~~lvf~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 232 (323)
.+..++++||.+-. .+..++..|+..|+ .+..+.|++
T Consensus 77 ~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 77 SNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 46679999999865 57778888888887 477777764
No 244
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=38.62 E-value=39 Score=30.53 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=51.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCCccc---cccCC-CCC---EEEeChHHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLRPQE---DSLNN-PID---MVVGTPGRILQHIE 83 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~-~~~---Iii~Tp~~l~~~~~ 83 (323)
.++.++||.|+++.-+..+++.+++.... .+-.+..++|+... ... ..+.+ ..+ |+++| .+ -
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt-----~~-l 509 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTS-----QL-L 509 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEES-----ST-T
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEEC-----Ch-h
Confidence 45679999999999999999999887542 12235666666442 111 11222 223 77777 22 2
Q ss_pred cCCCCCCCCcEEeecchh
Q 047490 84 DGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h 101 (323)
...+.+.++++||++..-
T Consensus 510 ~~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 510 TTGVDAPTCKNVVLARVV 527 (590)
T ss_dssp TTTCCCTTEEEEEEESCC
T ss_pred hcCccchheeEEEEEecC
Confidence 345778889999986653
No 245
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=38.02 E-value=45 Score=23.10 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=29.1
Q ss_pred CccEEEEcCCHHHHHHH-HHHHHHhccccce-eEEEeecCccCCccccccCCCCCEEEeChHHH
Q 047490 17 RPRAVVLCPTRELSEQV-FRVAKSISHHARF-RSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l 78 (323)
-.+++++|++=--..++ +..+++.++..++ .+.........-. .+++++|+||+--
T Consensus 13 ~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~~------~~~DlIist~~l~ 70 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP------PDVDLVITHRDLT 70 (125)
T ss_dssp CCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCCC------TTCSEEEEEHHHH
T ss_pred ccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHCC------CCCCEEEECCccc
Confidence 35799999854433333 3455555544454 3222222211111 2579999998743
No 246
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=37.96 E-value=26 Score=28.63 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=31.5
Q ss_pred CCCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 195 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
..+..++++||.+-..+...+..|...|+ .+..+.|++.
T Consensus 251 ~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 251 VDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp CCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred CCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 34668999999998888888888888887 5777888754
No 247
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=37.90 E-value=21 Score=24.08 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=26.1
Q ss_pred ccEEEEcC----CHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChH
Q 047490 18 PRAVVLCP----TRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 18 ~~~lvl~P----~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
-+++++|+ |.-++..+.+.+.+. ++.+..-..+... ... ...++|++++||+
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~----gi~~~i~~~~~~~--~~~-~~~~~D~Ii~t~~ 60 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSK----NINATIEAIAETR--LSE-VVDRFDVVLLAPQ 60 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHH----TCSEEEEEECSTT--HHH-HTTTCSEEEECSC
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHC----CCCeEEEEecHHH--HHh-hcCCCCEEEECCc
Confidence 45888886 334445544445443 4333222222111 111 1345899999986
No 248
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=37.66 E-value=53 Score=21.38 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=33.7
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.+...-...+...+.. .+-. +..+.+.. ...+.+....+.+..+.-.++...-.+.++..++......+++.|
T Consensus 8 dd~~~~~~~l~~~l~~---~~~~-v~~~~~~~---~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 80 (116)
T 3a10_A 8 DDEPNIRELLKEELQE---EGYE-IDTAENGE---EALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT 80 (116)
T ss_dssp CSCHHHHHHHHHHHHH---TTCE-EEEESSHH---HHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred eCCHHHHHHHHHHHHH---CCCE-EEEeCCHH---HHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEE
Confidence 3334344455555543 2223 33444433 333444555566666655554333334444444322344566655
Q ss_pred c
Q 047490 258 D 258 (323)
Q Consensus 258 ~ 258 (323)
.
T Consensus 81 ~ 81 (116)
T 3a10_A 81 A 81 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 249
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=37.65 E-value=85 Score=22.41 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.5
Q ss_pred ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 209 NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 209 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..++.+.+.|+..++.|.. +.+++..+..+.+++|.+
T Consensus 41 ~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 41 VDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSK 77 (146)
T ss_dssp HHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHH
Confidence 3778899999999999765 556888888899998876
No 250
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=37.54 E-value=81 Score=24.96 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=43.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHH-HHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER-VENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r-~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++.-.+.+.++.+.+.++..+..+..+..+++..+. +...++..+.-|.+++||..-
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 56788888888888889999998888888888888774433 333333322226688888764
No 251
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=37.53 E-value=36 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=18.7
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~ 120 (323)
....+++|+||+|.+.. ...+.++..+.
T Consensus 80 ~~~~kvviIdead~lt~----~a~naLLk~LE 107 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QAANAFLKALE 107 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HHHHHTHHHHH
T ss_pred cCCceEEEeccHHHhCH----HHHHHHHHHHh
Confidence 45689999999998743 33444444443
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=37.28 E-value=1.4e+02 Score=22.99 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=44.9
Q ss_pred CCCccEEEEcC----CHHHHHHHHHHHHHhccccceeEEEeecCccCCc---ccccc-CCCCCEEEeChHHHHHHHHcCC
Q 047490 15 PRRPRAVVLCP----TRELSEQVFRVAKSISHHARFRSTMVSGGGRLRP---QEDSL-NNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 15 ~~~~~~lvl~P----~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.++...++--| ...++.|....+... +.++..+.+..+... ....+ .....+-+.+.+.++..+....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~----g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA----DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT----TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc----CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34555555566 344566666666544 335555544332210 01111 0112456677777777666532
Q ss_pred CCCCCCcEEeecchhhh
Q 047490 87 MVYGDIKYLVLDEADTM 103 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~ 103 (323)
.-..+++||+||++.+
T Consensus 86 -~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 86 -FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -SCTTCCEEEECSGGGS
T ss_pred -hCCCCCEEEEecCccC
Confidence 2345899999999854
No 253
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=36.87 E-value=45 Score=26.05 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.3
Q ss_pred ChHHHHHHHHcCCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+....+.++++.++-+||--
T Consensus 48 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 75 (233)
T 3nwp_A 48 TPLKLFQLLSMKSIDWSDVYITLADERW 75 (233)
T ss_dssp TTHHHHHHHHHCCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCChhHeEEEeCeecc
Confidence 7778877777777889999999999954
No 254
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=36.81 E-value=93 Score=23.09 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=37.7
Q ss_pred CeEEEEecCc-----------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 199 NKVMVFCNTL-----------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 199 ~~~lvf~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.+||+.+.. ..++.+.+.|+..|+.|.. +.+++..+..+.+++|.+
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 5677777763 5888999999999999864 566888899999998853
No 255
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=36.02 E-value=32 Score=28.33 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCe-eEEecCCCC
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQIS-TVNYHGEVP 233 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~-~~~~~~~~~ 233 (323)
.+.+.+ ..+.+..++++||.+-..+...+..|.+ .|+. +..+.|++.
T Consensus 248 ~l~~~~-~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 248 ELERLY-DFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHHHT-TTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHHHh-cCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 444444 2345678999999999888888888886 7884 888888853
No 256
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=35.23 E-value=29 Score=24.15 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.8
Q ss_pred CCeEEEEecCcccH---------HHHHHHHhhCCCeeEEecCCCC
Q 047490 198 GNKVMVFCNTLNSS---------RAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 198 ~~~~lvf~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
..++++||.+-..+ ..++..|...|+.+..+.|++.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 35899999987653 4567778888888888999854
No 257
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=34.64 E-value=25 Score=25.57 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.8
Q ss_pred CCcEEeecchhhhh
Q 047490 91 DIKYLVLDEADTMF 104 (323)
Q Consensus 91 ~~~~vIiDE~h~~~ 104 (323)
.-.++|+||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 34689999999986
No 258
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=34.34 E-value=37 Score=27.08 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=28.9
Q ss_pred CCCCeEEEEecCcc-cHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLN-SSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-. .+..++..|+..|+ .+..+.|++.
T Consensus 75 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 75 ANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp CTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 35678999998853 56777888888887 5778888743
No 259
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=34.28 E-value=86 Score=24.47 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=44.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHH-HHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ-ERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..+++.. ......+...+. |.+++||...
T Consensus 30 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~id~lv~nA 91 (252)
T 3h7a_A 30 EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-APLEVTIFNV 91 (252)
T ss_dssp TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SCEEEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CCceEEEECC
Confidence 466888888888888999988888777788788777644 334555555544 6777888764
No 260
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=34.16 E-value=1e+02 Score=23.79 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHH-HHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ-ERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..++... ..+...++..+.-|.++++|...
T Consensus 28 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~A 90 (247)
T 3lyl_A 28 KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNA 90 (247)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 466888888888888888888888777777777777643 34445555544336677777764
No 261
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=33.99 E-value=31 Score=27.54 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhh-CCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNE-NQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~-~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|++ .|+. +..+.|++.
T Consensus 224 ~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 224 DNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 4567999999998888888888885 7874 888888743
No 262
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=33.98 E-value=35 Score=27.96 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.4
Q ss_pred CCcEEeecchhhhhc
Q 047490 91 DIKYLVLDEADTMFD 105 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~ 105 (323)
+.+++++||+|.+..
T Consensus 98 ~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSG 112 (324)
T ss_dssp TCSEEEEECGGGGTT
T ss_pred CCCEEEEcCcccccC
Confidence 467999999998764
No 263
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=33.55 E-value=71 Score=25.63 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.6
Q ss_pred cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 208 LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 208 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
...++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 48 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 48 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3578899999999999876 4567888999999998876
No 264
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=33.31 E-value=55 Score=28.89 Aligned_cols=27 Identities=7% Similarity=0.162 Sum_probs=23.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH 43 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~ 43 (323)
+..+|||+|+...+.|+++.++.+.+.
T Consensus 39 ~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 39 AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 446899999999999999999999764
No 265
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=33.05 E-value=1.4e+02 Score=23.90 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=38.0
Q ss_pred CCeEEEEecCc--------------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 198 GNKVMVFCNTL--------------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 198 ~~~~lvf~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+-+||+.+.. ..++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHH
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHH
Confidence 35677777652 378899999999999876 4667888999999999876
No 266
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=32.59 E-value=46 Score=27.50 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=25.0
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
....+.+|+||+|.+.. ...+.++..+... +.+..+|++|..+
T Consensus 106 ~~~~kvviIdead~l~~----~a~naLLk~lEep-----~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTD----AAANALLKTLEEP-----PAETWFFLATREP 148 (334)
T ss_dssp TSSCEEEEESCGGGBCH----HHHHHHHHHHTSC-----CTTEEEEEEESCG
T ss_pred cCCcEEEEECchhhcCH----HHHHHHHHHhcCC-----CCCeEEEEEeCCh
Confidence 35688999999998743 3344455444332 1233566655443
No 267
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=32.53 E-value=53 Score=26.54 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=28.6
Q ss_pred CCCCeEEEEecC--cc-cHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNT--LN-SSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~--~~-~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..+++|||.+ -. .+..++..|+..|+ .+..+.|++.
T Consensus 90 ~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 90 SNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp CTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 456799999988 33 47788888988887 5777877643
No 268
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=32.37 E-value=1.5e+02 Score=21.84 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.7
Q ss_pred CCCcEEeecchhhhhc
Q 047490 90 GDIKYLVLDEADTMFD 105 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~ 105 (323)
..-.++|+||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 101 APFKIIFLDEADALTA 116 (226)
T ss_dssp CSCEEEEEETGGGSCH
T ss_pred cCceEEEEeChhhcCH
Confidence 4567999999998643
No 269
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=32.26 E-value=1.3e+02 Score=21.03 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=32.2
Q ss_pred CeEEEEec------CcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 199 NKVMVFCN------TLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 199 ~~~lvf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.+++||+. ....|..+.+.|...+.....+.=...+..+..+.+...
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G 87 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 87 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC
Confidence 47888877 577899999999988877666554444555555544433
No 270
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=32.15 E-value=1.1e+02 Score=24.58 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=37.5
Q ss_pred CeEEEEecC-------------cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 199 NKVMVFCNT-------------LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 199 ~~~lvf~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+-+||+.+. ...++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHH
Confidence 456776664 5578899999999999876 4567899999999999976
No 271
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=32.09 E-value=79 Score=24.96 Aligned_cols=15 Identities=13% Similarity=0.547 Sum_probs=12.3
Q ss_pred CCCcEEeecchhhhh
Q 047490 90 GDIKYLVLDEADTMF 104 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~ 104 (323)
....++++||+|.+.
T Consensus 123 ~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 123 SQLSCVVVDDIERLL 137 (272)
T ss_dssp SSEEEEEECCHHHHT
T ss_pred cCCcEEEEEChhhhh
Confidence 346799999999984
No 272
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=32.05 E-value=2.1e+02 Score=23.46 Aligned_cols=125 Identities=7% Similarity=0.014 Sum_probs=56.7
Q ss_pred hhccccCCCCccEEEEcC----CHHHHHHHHHHHHHhcccc---ceeEEEeecCccCCcc------ccccCCCCCEEEe-
Q 047490 8 MLGVLMKPRRPRAVVLCP----TRELSEQVFRVAKSISHHA---RFRSTMVSGGGRLRPQ------EDSLNNPIDMVVG- 73 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P----~~~L~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~Iii~- 73 (323)
+...+...+++.+++.-| ...++..+.+.+....... ......+.+-...... .+.+.+ ..+-.+
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g-~~~~~~~ 114 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK-ENLCGDI 114 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC-CC--CCC
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC-CCCCchH
Confidence 333444444444444444 3567777888777654322 2344455443322211 111211 111111
Q ss_pred ChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 74 Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
+.+.+..++..........-++++||+|.+.+ ...+..++.. ... ...++-+|+.++|+.
T Consensus 115 ~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~-~~~----~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 115 SLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKW-ISS----KNSKLSIICVGGHNV 174 (318)
T ss_dssp CHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHH-HHC----SSCCEEEEEECCSSC
T ss_pred HHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhc-ccc----cCCcEEEEEEecCcc
Confidence 22334444443211223456899999999872 2223333321 111 112456778888864
No 273
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.88 E-value=69 Score=25.12 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=37.6
Q ss_pred HHHHHHHhc--c-CCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEE---ecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 184 LEALLQVLE--P-SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN---YHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 184 ~~~l~~~l~--~-~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.+.|++.+. . ....+.++++++ .....+.+.+.|++.|..+.. |....+........+.+.. +..++++-|
T Consensus 116 ~e~L~~~l~~~~~~~~~~~~vL~~r-g~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~--~~~d~v~ft 192 (254)
T 4es6_A 116 SEALLALPAFQDSLRVHDPKVLIMR-GEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRA--ERLNGLVVS 192 (254)
T ss_dssp HHHHHTCHHHHHHTCSSSCEEEEEE-CSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHH--TTCCEEECC
T ss_pred HHHHHHhHhhcccccCCCCEEEEEc-CCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHh--CCCCEEEEc
Confidence 455555553 1 123556776655 445667888888888876643 2222222122233444555 555555555
Q ss_pred c
Q 047490 258 D 258 (323)
Q Consensus 258 ~ 258 (323)
+
T Consensus 193 S 193 (254)
T 4es6_A 193 S 193 (254)
T ss_dssp S
T ss_pred C
Confidence 4
No 274
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.81 E-value=1.9e+02 Score=22.71 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHHhccCCCCCC--eEEEEecCcccHHHHHHHHhhCCCe
Q 047490 184 LEALLQVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~--~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
...+.+++... +. +.-|||.+...+.-+.+.+++.|..
T Consensus 187 ~~~~~~~l~~~---~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKN---SKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHT---TTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcC---CCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 44555566543 33 7789999988888888888887653
No 275
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=31.76 E-value=89 Score=25.52 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=39.1
Q ss_pred CeEEEEecC-----------cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 199 NKVMVFCNT-----------LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 199 ~~~lvf~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+-+||+++. ...++.+.+.|+..|+.|. .+.+++..+..+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 468999888 4578999999999999976 4556899999999999854
No 276
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=31.65 E-value=1.2e+02 Score=20.51 Aligned_cols=107 Identities=10% Similarity=0.105 Sum_probs=48.5
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
+.+.......+...+... .+-.++-.+.+ +....+.+....+.+.++.-.++...-.+.++..++......|++.
T Consensus 15 vdd~~~~~~~l~~~L~~~--~~~~~v~~~~~---~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 89 (143)
T 2qv0_A 15 VEDEFLAQQELSWLINTH--SQMEIVGSFDD---GLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI 89 (143)
T ss_dssp ECSCHHHHHHHHHHHHHH--SCCEEEEEESC---HHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEE
T ss_pred EcCCHHHHHHHHHHHHhC--CCceEEEEeCC---HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEE
Confidence 444444445555555442 12222223333 3344444555566777776666544444555555542233345555
Q ss_pred eccccc---ccCCCCCEEEEcCCCCCchhhhhhhccc
Q 047490 257 TDLAAR---GLDLDVDHVIMFDFPLNSIDYLHRTGRT 290 (323)
Q Consensus 257 t~~~~~---Gid~~~~~vi~~~~p~s~~~~~Q~~GR~ 290 (323)
|..... .+...+..++. .|.+..++.+++.++
T Consensus 90 s~~~~~~~~~~~~g~~~~l~--KP~~~~~l~~~i~~~ 124 (143)
T 2qv0_A 90 TAWKEHAVEAFELEAFDYIL--KPYQESRIINMLQKL 124 (143)
T ss_dssp ESCCTTHHHHHHTTCSEEEE--SSCCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHhCCcceEEe--CCCCHHHHHHHHHHH
Confidence 543111 11112333332 365666665555443
No 277
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=31.32 E-value=91 Score=24.77 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=43.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.+...+..+..+..+++..+ .++..++..+.-|.+++||...
T Consensus 55 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 55 AGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNA 117 (276)
T ss_dssp TTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5678888888888889998888887777777777776443 3444444443225677888754
No 278
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=31.30 E-value=24 Score=28.90 Aligned_cols=16 Identities=38% Similarity=0.347 Sum_probs=13.2
Q ss_pred CCCCcEEeecchhhhh
Q 047490 89 YGDIKYLVLDEADTMF 104 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~ 104 (323)
....+++|+||+|.+.
T Consensus 103 ~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SSCEEEEEEESCCCGG
T ss_pred CCCCeEEEEECCcccC
Confidence 3467899999999875
No 279
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=31.07 E-value=1.5e+02 Score=23.35 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=43.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.|-++++.-.+.+.+++..+.+++.+..+..+..+++..+ .+...++..+.-|.+++||..-
T Consensus 32 ~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 32 AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 5667777777777778888888888888888888876443 3444444444347788898864
No 280
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=31.04 E-value=43 Score=25.82 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=11.1
Q ss_pred CCcEEeecchhhh
Q 047490 91 DIKYLVLDEADTM 103 (323)
Q Consensus 91 ~~~~vIiDE~h~~ 103 (323)
.+++|++||++-+
T Consensus 101 ~~dvViIDEaQF~ 113 (214)
T 2j9r_A 101 EMDVIAIDEVQFF 113 (214)
T ss_dssp SCCEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 5899999999953
No 281
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=30.89 E-value=67 Score=22.92 Aligned_cols=38 Identities=5% Similarity=0.070 Sum_probs=25.5
Q ss_pred CCCCeEEEEec-CcccHHHHHHHH--------hhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCN-TLNSSRAVDHFL--------NENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~-~~~~~~~l~~~l--------~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||. +-..+...+..| +..|+ .+..+.|++.
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 35678999998 654444444444 34676 6888889975
No 282
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=30.80 E-value=1.1e+02 Score=20.01 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.8
Q ss_pred CeEEEEec------CcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 199 NKVMVFCN------TLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 199 ~~~lvf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.++++|.. +...|..+...|...+.....+.=...+..+....+...
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 67 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC
Confidence 46888876 566899999999998887766665555555555544443
No 283
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=30.75 E-value=33 Score=24.75 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
+.....+++...+..|.+++|.|.+...++.+-+.|=.......+=|+-..... +..-.|+|+++....
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~-----------~~~~PV~L~~~~~~~ 92 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP-----------RGGAPVEIAWPQKRS 92 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS-----------TTCCSEEEECTTSCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC-----------CCCCCEEEeCCCCCC
Confidence 455556666666678999999999999999999988555444455554322000 134468888753211
Q ss_pred ccCCCCCEEEEcCCC
Q 047490 263 GLDLDVDHVIMFDFP 277 (323)
Q Consensus 263 Gid~~~~~vi~~~~p 277 (323)
+-..+.+|+.+..
T Consensus 93 --~~~~~vLinL~~~ 105 (150)
T 3sxu_A 93 --SSRRDILISLRTS 105 (150)
T ss_dssp --CSCCSEEEECCSS
T ss_pred --CCcCCEEEECCCC
Confidence 1146678887643
No 284
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=30.70 E-value=1.1e+02 Score=22.43 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCeEEEEecCc--------------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 198 GNKVMVFCNTL--------------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 198 ~~~~lvf~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+.+||+.+.. ..++.+.+.|+..++.|. .+.+++..+..+.+++|.+
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhh
Confidence 35677776652 278899999999999875 5677888898888888876
No 285
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=30.31 E-value=2e+02 Score=22.55 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 223 (323)
-...+.+++.. .+.+..|||.+...|.-+.+.+++.|.
T Consensus 182 ~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 182 SERVMRQVIDS---GIPFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHHHHT---TCCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh---CCCCCEEEECCchHHHHHHHHHHhCCC
Confidence 33455555554 245778999999988888888888776
No 286
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=30.20 E-value=38 Score=30.32 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 522 ~~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 35678999999988899999999999998888888864
No 287
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.12 E-value=1.2e+02 Score=20.01 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=31.6
Q ss_pred CCeEEEEec------CcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHh
Q 047490 198 GNKVMVFCN------TLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 198 ~~~~lvf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
..+++||.. ....|..+.+.|.+.+.....+.=...+..++.+.+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 358999988 4889999999999988776655433344444444443
No 288
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=29.79 E-value=52 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=18.3
Q ss_pred EEEeChHHHHHHHHcCCCCCCCCcEEeecchhhh
Q 047490 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 70 Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~ 103 (323)
+.+.+.+.+... .+++++|+|||++-+
T Consensus 77 ~~~~~~~d~~~~-------~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 77 LPACLLRDVAQE-------ALGVAVIGIDEGQFF 103 (195)
T ss_dssp EEESSGGGGHHH-------HHTCSEEEESSGGGC
T ss_pred eecCCHHHHHHh-------ccCCCEEEEEchhhh
Confidence 445665555543 335899999999955
No 289
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=29.74 E-value=71 Score=24.57 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=28.2
Q ss_pred CCeEEEEecCcc-cHHHHHHHHhhCCCe-eEEecCC
Q 047490 198 GNKVMVFCNTLN-SSRAVDHFLNENQIS-TVNYHGE 231 (323)
Q Consensus 198 ~~~~lvf~~~~~-~~~~l~~~l~~~~~~-~~~~~~~ 231 (323)
..++++||.+-. .+..++..|+ .|+. +..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 678999999877 7888889999 8884 8888888
No 290
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=29.56 E-value=1.1e+02 Score=23.87 Aligned_cols=62 Identities=6% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.+...+..+..+..+++..+ .+...++..+.-|.+++||...
T Consensus 34 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 34 QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 4668888888888888888888877777777777776443 3344444433235677888764
No 291
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=29.37 E-value=50 Score=28.44 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+..++..|+..|+ .+..+.|++.
T Consensus 201 ~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 201 RHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 4567999999988888888888988887 5888888754
No 292
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=29.32 E-value=52 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=17.7
Q ss_pred EEEeChHHHHHHHHcCCCCCCCCcEEeecchhhh
Q 047490 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 70 Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~ 103 (323)
+.+.+++.++..+. .++++|++||++.+
T Consensus 66 ~~~~~~~~i~~~~~------~~~dvViIDEaqfl 93 (191)
T 1xx6_A 66 VAIKNSREILKYFE------EDTEVIAIDEVQFF 93 (191)
T ss_dssp EEESSSTHHHHHCC------TTCSEEEECSGGGS
T ss_pred EeeCCHHHHHHHHh------ccCCEEEEECCCCC
Confidence 44555554444322 25899999999953
No 293
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.27 E-value=2.1e+02 Score=22.62 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=22.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
.+.+.-|||.+...|.-+.+.+++.|..
T Consensus 200 ~~~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 200 SHMPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp -CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 3467889999998888888888887653
No 294
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.21 E-value=2.1e+02 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=27.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 223 (323)
...+.+++.. .+.+..|||.+...+.-+.+.+++.+.
T Consensus 175 ~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 175 RRVAHQLLED---YPNLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp HHHHHHHHHH---CTTEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh---CCCceEEEECCCcchhhHHHHHHhcCC
Confidence 3445555544 346889999999988888888888765
No 295
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.04 E-value=24 Score=29.35 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=11.4
Q ss_pred CCCCcEEeecchhhh
Q 047490 89 YGDIKYLVLDEADTM 103 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~ 103 (323)
..+.+++|+||+|.+
T Consensus 132 ~~~~~vlilDE~~~L 146 (354)
T 1sxj_E 132 AHRYKCVIINEANSL 146 (354)
T ss_dssp --CCEEEEEECTTSS
T ss_pred CCCCeEEEEeCcccc
Confidence 346789999999974
No 296
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=27.85 E-value=1.7e+02 Score=22.99 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=31.1
Q ss_pred cHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 210 SSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 210 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 42 D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 77 (250)
T 2j32_A 42 DAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSK 77 (250)
T ss_dssp HHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 78899999999999976 4567899999999999986
No 297
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=27.31 E-value=74 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=21.1
Q ss_pred ChHHHHHHHHc--CCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIED--GNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~--~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+.. ..+.++++.++-+||--
T Consensus 50 tP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (251)
T 3tx2_A 50 TGIALLKHLRDVASGLDWTNVHVFWGDDRY 79 (251)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEEESEEES
T ss_pred hHHHHHHHHHhhccCCCCceeEEEeeeecc
Confidence 56666666655 67888999999999974
No 298
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=27.24 E-value=76 Score=26.61 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=43.5
Q ss_pred CCCccEEEEcCC-H---HHHHHHHHHHHHhccccc--eeEEEeecCccCCccc----cccCCCCCEEEeChHHHHHHHHc
Q 047490 15 PRRPRAVVLCPT-R---ELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQE----DSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 15 ~~~~~~lvl~P~-~---~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
.+..++-+|+|. . .--....+-++++....+ +.+..+.+.....+.. ....+++++||++...+...+..
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~ 103 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVK 103 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHH
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Confidence 334556666663 2 222334444444444445 5555444332221111 12346789999997666665544
Q ss_pred CCCCCCCCcEEeecc
Q 047490 85 GNMVYGDIKYLVLDE 99 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE 99 (323)
......++.++++|-
T Consensus 104 vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 104 VAKKFPDVKFEHATG 118 (356)
T ss_dssp HHTTCTTSEEEEESC
T ss_pred HHHHCCCCEEEEEec
Confidence 323345777888875
No 299
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=26.88 E-value=77 Score=22.84 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=11.6
Q ss_pred CCcEEeecchhhhh
Q 047490 91 DIKYLVLDEADTMF 104 (323)
Q Consensus 91 ~~~~vIiDE~h~~~ 104 (323)
...++|+||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 115 GNVILFIDELHTMV 128 (195)
T ss_dssp TTEEEEEETGGGGT
T ss_pred CCeEEEEeCHHHHh
Confidence 34589999999986
No 300
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=26.50 E-value=1.3e+02 Score=19.42 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=32.1
Q ss_pred CeEEEEe------cCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 199 NKVMVFC------NTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 199 ~~~lvf~------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.++++|. +....|..+...|.+.+.....+.=...+..+..+.+.+..
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 4688888 46678999999998887766555544445555555444443
No 301
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=26.46 E-value=1.1e+02 Score=23.89 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
.+.++++...+....+.+.+.+...+..+..+..+++..+ .....+...+.-|.++++|....
T Consensus 52 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 52 LGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4667888888888888888888877777777777776433 34444444332256777777643
No 302
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=26.32 E-value=97 Score=24.98 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=12.6
Q ss_pred CCCcEEeecchhhhh
Q 047490 90 GDIKYLVLDEADTMF 104 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~ 104 (323)
....++|+||+|.+.
T Consensus 109 ~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 109 ASFKIIFLDEADALT 123 (327)
T ss_dssp CSCEEEEEETGGGSC
T ss_pred CCCeEEEEeCCCcCC
Confidence 567899999999874
No 303
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=26.26 E-value=1.2e+02 Score=24.89 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=39.0
Q ss_pred CCeEEEEecCc------------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 198 GNKVMVFCNTL------------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 198 ~~~~lvf~~~~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+.+||+.+.. ..++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 45778887763 578899999999999875 5667899999999998875
No 304
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=25.98 E-value=1.7e+02 Score=23.20 Aligned_cols=38 Identities=3% Similarity=0.025 Sum_probs=31.9
Q ss_pred cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 208 LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 208 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
...++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 43 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 80 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSAS 80 (259)
T ss_dssp CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3578999999999999976 5557888999999999986
No 305
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=25.92 E-value=47 Score=29.97 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 539 ~~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 539 PVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 45678999999998899999999999998888888864
No 306
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=25.83 E-value=1.6e+02 Score=19.95 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=30.5
Q ss_pred CeEEEEec------CcccHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHH
Q 047490 199 NKVMVFCN------TLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLN 242 (323)
Q Consensus 199 ~~~lvf~~------~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~ 242 (323)
.+++||.. ....|..+.+.|.+.+.. ...+.=..+++.++.+.+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 48999988 488899999999998874 555443344455554433
No 307
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=25.80 E-value=92 Score=24.35 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHH-HHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ-ERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..+++.. ..+...++..+.-|.+++||..-
T Consensus 29 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 91 (257)
T 3imf_A 29 EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNA 91 (257)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 566888888888888888888877666777777777643 33344444433225677787754
No 308
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=25.65 E-value=69 Score=27.08 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=28.7
Q ss_pred CCCCeEEEEe-cCc-ccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFC-NTL-NSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~-~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++|| .+- ..+..++..|+..|+.+..+.|++.
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 4567999999 433 3444777888888888888999975
No 309
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.54 E-value=2.7e+02 Score=22.52 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
+.+.+++.. .+.+.-|||.+...|.-+.+.+++.|..
T Consensus 228 ~~~~~ll~~---~~~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 228 DMLDRALAE---RPDCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp HHHHHHHHH---CTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcC---CCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 444455543 3457889999988888888888887654
No 310
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.49 E-value=1.5e+02 Score=19.68 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=43.3
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHH---HhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHF---LNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~---l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.+.++-.+.+.++......- .+++.+.+ ..-+.+..+ -++.|..+...+..-....|.+..+.|+.
T Consensus 58 vedkedfrenireiwerypql--dvvvivtt-ddkewikdfieeakergvevfvvynnkdddrrkeaqqefrs 127 (162)
T 2l82_A 58 VEDKEDFRENIREIWERYPQL--DVVVIVTT-DDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRS 127 (162)
T ss_dssp CCSHHHHHHHHHHHHHHCTTC--CEEEEEEC-CCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCC
T ss_pred eccHHHHHHHHHHHHHhCCCC--cEEEEEec-CcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhh
Confidence 344555667777777665332 23333333 333444444 45679999988888888888999999997
No 311
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=25.38 E-value=62 Score=28.02 Aligned_cols=60 Identities=17% Similarity=0.415 Sum_probs=33.1
Q ss_pred eeEEEeecCccCCccc--ccc-------CCCCCEEEeChHHHHHHH----HcCC-----CCCC-CCcEEeecchhhhhc
Q 047490 46 FRSTMVSGGGRLRPQE--DSL-------NNPIDMVVGTPGRILQHI----EDGN-----MVYG-DIKYLVLDEADTMFD 105 (323)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~-------~~~~~Iii~Tp~~l~~~~----~~~~-----~~~~-~~~~vIiDE~h~~~~ 105 (323)
.....++|........ ..+ ..+..+++.+.+.+...+ .... ..+. +.+++++||+|.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 4566777766554321 111 124567777766553322 1111 0123 678999999998865
No 312
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=25.33 E-value=70 Score=28.58 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecC-CCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG-EVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~ 233 (323)
++.++++||.+-..+...+..|+..|+.+..+.| ++.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3579999999988888888899999999888999 864
No 313
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=24.79 E-value=1.5e+02 Score=26.03 Aligned_cols=57 Identities=7% Similarity=-0.040 Sum_probs=32.0
Q ss_pred CCCCccEEEEcCC-HHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeCh
Q 047490 14 KPRRPRAVVLCPT-RELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75 (323)
Q Consensus 14 ~~~~~~~lvl~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp 75 (323)
..+..+++|+||+ ..-..=+...++++++... ....+ +- .+.......++|++|+|-
T Consensus 395 ~~~~~~~~vVC~~GigtS~lL~~~L~~~F~~~~-~~~~i-s~---~e~~~~~~~~~D~ViStv 452 (485)
T 3sqn_A 395 QAQTMTAYFLFQGEPAWKAFLQQELAAYLGTRV-KLQAI-EY---VELSQLTLNEADIIISNF 452 (485)
T ss_dssp CCCSEEEEEECCSCHHHHHHHHHHHHHHHCTTE-EEEEC-CT---TTCCCCCCCTTCEEEESS
T ss_pred ccccceEEEECCCchhHHHHHHHHHHHhcCCce-Eeecc-cH---HHHhhccccCCCEEEEcc
Confidence 4557899999998 4444445566777776421 11122 11 111121224689999994
No 314
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=24.64 E-value=2.2e+02 Score=21.16 Aligned_cols=48 Identities=6% Similarity=0.182 Sum_probs=38.2
Q ss_pred CCeEEEEecCc--------------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 198 GNKVMVFCNTL--------------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 198 ~~~~lvf~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+.+|||++.. ..++.+.+.|+..++.|..+ .+++..+..+.+++|.+
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 105 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHT
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhh
Confidence 35678887753 36889999999999998755 56888888888888876
No 315
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=24.64 E-value=60 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.6
Q ss_pred ChHHHHHHHHc--CCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIED--GNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~--~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+.. ..+.++++.++-+||--
T Consensus 50 tP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (248)
T 3oc6_A 50 TGIGLLKRVRERSGEIDWSKVHIYWGDERF 79 (248)
T ss_dssp HHHHHHHHHHHTGGGSCGGGEEEEESEEEC
T ss_pred cHHHHHHHHHhhccCCCcceEEEEEeeecc
Confidence 55666666655 56778899999999974
No 316
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=24.56 E-value=83 Score=27.01 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 4668999999998888888888998888 5888888753
No 317
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.53 E-value=2.8e+02 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=26.3
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
+.+.+++.. .+.+.-|||.+...|.-+.+.+++.|..
T Consensus 231 ~~~~~ll~~---~~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 231 EGVEMLLER---GAKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHT---TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcC---CCCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 444455543 3457889999988888888888887654
No 318
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=24.37 E-value=2.6e+02 Score=22.05 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=22.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
.+.+.-|||.+...|.-+.+.+++.|..
T Consensus 195 ~~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 195 PDGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp TTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 3567889999998888888888887653
No 319
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.33 E-value=41 Score=22.49 Aligned_cols=109 Identities=10% Similarity=0.114 Sum_probs=56.6
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc--CCCCCEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE--DGDCPTL 254 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~il 254 (323)
+.+.......+...+... +-. +..+.+ .+...+.+.+..+.+.++.-.++...-.++++..++. .....|+
T Consensus 9 vdd~~~~~~~l~~~L~~~---g~~-v~~~~~---~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (127)
T 3i42_A 9 VEDYQAAAETFKELLEML---GFQ-ADYVMS---GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFV 81 (127)
T ss_dssp ECSCHHHHHHHHHHHHHT---TEE-EEEESS---HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEE
T ss_pred EcCCHHHHHHHHHHHHHc---CCC-EEEECC---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEE
Confidence 344444455566666542 222 334443 3344445566667777776666654445555555542 2445677
Q ss_pred EEeccccccc-C---CCCCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 255 VCTDLAARGL-D---LDVDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 255 v~t~~~~~Gi-d---~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
+.|....... . ..++.++ ..|.+..++.+++.++.+.+
T Consensus 82 ~~s~~~~~~~~~~~~~g~~~~l--~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 82 AVSGFAKNDLGKEACELFDFYL--EKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEECC-CTTCCHHHHHHCSEEE--ESSCCHHHHHHHHHHHC---
T ss_pred EEECCcchhHHHHHHHhhHHhe--eCCCCHHHHHHHHHHhhccC
Confidence 6665433321 1 1234333 36788888888887765543
No 320
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=24.31 E-value=1.3e+02 Score=23.24 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=41.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.+...+..+..+..++...+ .+...++..+.-|.++++|...
T Consensus 32 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 32 EGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4667888888888888888888877777777777776433 3333443332225677777764
No 321
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=24.31 E-value=4.1e+02 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=26.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEe
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNY 228 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 228 (323)
..+.+.|.+++...+..+.+.|.+.++++...
T Consensus 341 ~~~diaVL~r~~~~~~~l~~~L~~~gIp~~~~ 372 (673)
T 1uaa_A 341 QYKDYAILYRGNHQSRVFEKFLMQNRIPYKIS 372 (673)
T ss_dssp CTTTEEEEESSSGGGTTHHHHHHHTTCCEEES
T ss_pred CccCEEEEEechhhHHHHHHHHHHCCCCEEEe
Confidence 34578899999999999999999999887654
No 322
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=24.31 E-value=1.4e+02 Score=24.50 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=34.3
Q ss_pred CeEEEEecC-------------cccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 199 NKVMVFCNT-------------LNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 199 ~~~lvf~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+-+||+.+. ...++.+.+.|+..|+.|. .+.+++..+..+.+++|.+
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 456776664 4567788888888888875 4456788888888888865
No 323
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=24.26 E-value=1.4e+02 Score=22.08 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=30.0
Q ss_pred ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 209 NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 209 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..++.+.+.|+..|+.|.. +.+++..+..+.+++|.+
T Consensus 69 ~D~~~L~~~F~~LgF~V~v-~~dlt~~em~~~l~~~s~ 105 (173)
T 2ql9_A 69 KDAEALFKCFRSLGFDVIV-YNDCSCAKMQDLLKKASE 105 (173)
T ss_dssp HHHHHHHHHHHHHTEEEEE-EESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHH
Confidence 4678889999999998855 556888888888888876
No 324
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.96 E-value=64 Score=26.52 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=12.6
Q ss_pred CCCcEEeecchhhhhc
Q 047490 90 GDIKYLVLDEADTMFD 105 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~ 105 (323)
...+++++||+|.+..
T Consensus 132 ~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA 147 (353)
T ss_dssp CSCEEEEETTGGGSCH
T ss_pred CCceEEEEECCCccCH
Confidence 4567999999998743
No 325
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=23.87 E-value=1.2e+02 Score=23.87 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=41.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..++...+ ..+..++..+.-|.+++||...
T Consensus 49 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA 111 (271)
T 4ibo_A 49 AGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNA 111 (271)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence 4667777777777788888888877777777777776433 3444444443336677888764
No 326
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=23.78 E-value=1.4e+02 Score=23.24 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=35.3
Q ss_pred EEcCCH-HHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC----CCCCCCcEEe
Q 047490 22 VLCPTR-ELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN----MVYGDIKYLV 96 (323)
Q Consensus 22 vl~P~~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~----~~~~~~~~vI 96 (323)
++.++. +++...++.+.+.....+-.+..+.|| +||..+.+.+.... +.++++.++-
T Consensus 5 ~~~~~~~~l~~~aA~~i~~~i~~~~~~~l~lsgG------------------stp~~~~~~L~~~~~~~~~~w~~v~~f~ 66 (238)
T 1y89_A 5 KIFPTADAVVKSLADDMLAYSQQGQPVHISLSGG------------------STPKMLFKLLASQPYANDIQWKNLHFWW 66 (238)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTSSCEEEEECCS------------------HHHHHHHHHHTSTTHHHHSCGGGEEEEE
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhCCCEEEEECCC------------------ccHHHHHHHHHhhhhccCCChhHeEEEe
Confidence 445554 477777777766654311122222222 25666666665433 6778888888
Q ss_pred ecchh
Q 047490 97 LDEAD 101 (323)
Q Consensus 97 iDE~h 101 (323)
+||--
T Consensus 67 ~DEr~ 71 (238)
T 1y89_A 67 GDERC 71 (238)
T ss_dssp SEEES
T ss_pred ceecC
Confidence 88864
No 327
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=23.60 E-value=58 Score=27.54 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=30.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 282 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWS 282 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHH
Confidence 678999999988888888889888884 888888765
No 328
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.45 E-value=70 Score=21.31 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=27.1
Q ss_pred cEEEEcC----CHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHH
Q 047490 19 RAVVLCP----TRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77 (323)
Q Consensus 19 ~~lvl~P----~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~ 77 (323)
++|++|- |.-++. .++++....++.+.....+...-.. . ..++|+++.+|+.
T Consensus 5 kIll~Cg~G~sTS~l~~----k~~~~~~~~gi~~~i~a~~~~~~~~--~-~~~~Dvil~~pqv 60 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVS----KMRAQAEKYEVPVIIEAFPETLAGE--K-GQNADVVLLGPQI 60 (106)
T ss_dssp EEEEECSSSTTTHHHHH----HHHHHHHHSCCSEEEEEECSSSTTH--H-HHHCSEEEECTTS
T ss_pred EEEEECCCchhHHHHHH----HHHHHHHHCCCCeEEEEecHHHHHh--h-ccCCCEEEEccch
Confidence 5777774 343444 4444444455554444333222111 1 1347999999973
No 329
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=23.25 E-value=1.4e+02 Score=23.83 Aligned_cols=76 Identities=5% Similarity=0.106 Sum_probs=47.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc---C-C-CCC-EEEeChHHHHHHHHcCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL---N-N-PID-MVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~-Iii~Tp~~l~~~~~~~~~~~ 89 (323)
++.++||.+.+...+..+.+.+.+.. ++.+..++|+.....+...+ . + .+. ++++|- . -...+.+
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-----~-~g~Glnl 181 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-----A-GGFGINL 181 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-----T-TCCCCCC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-----h-hcCCcCc
Confidence 46799999999999888888887632 44667788876544433322 2 2 345 566662 1 1234566
Q ss_pred CCCcEEeecch
Q 047490 90 GDIKYLVLDEA 100 (323)
Q Consensus 90 ~~~~~vIiDE~ 100 (323)
...+.||+=+.
T Consensus 182 ~~a~~VI~~d~ 192 (271)
T 1z5z_A 182 TSANRVIHFDR 192 (271)
T ss_dssp TTCSEEEECSC
T ss_pred ccCCEEEEECC
Confidence 67777766433
No 330
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.18 E-value=4.5e+02 Score=24.35 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 236 (323)
.+.+-|.+++...+..+.+.|.+.+++.....| .+--+
T Consensus 351 ~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~-~~f~~ 388 (724)
T 1pjr_A 351 YRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG-LKFYD 388 (724)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS-CCGGG
T ss_pred hhheeeeeecchhHHHHHHHHHHcCCCEEEeCC-cchhh
Confidence 357889999999999999999999988776543 44333
No 331
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=23.02 E-value=68 Score=26.67 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=12.2
Q ss_pred CcEEeecchhhhhcC
Q 047490 92 IKYLVLDEADTMFDR 106 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~ 106 (323)
..++|+||+|.+...
T Consensus 131 ~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKR 145 (387)
T ss_dssp EEEEEEETTTHHHHS
T ss_pred eEEEEEccHhhhccc
Confidence 458999999998654
No 332
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=22.92 E-value=1.4e+02 Score=20.57 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=30.2
Q ss_pred ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 209 NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 209 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
+.+..+...|...++....+.=.+++..|+++.+...
T Consensus 17 k~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 17 KKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 3457889999999988888777778889998888873
No 333
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=22.83 E-value=84 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=20.6
Q ss_pred ChHHHHHHHHc--CCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIED--GNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~--~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+.+ ..+.++++.++-+||--
T Consensus 66 tP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 95 (268)
T 3ico_A 66 NGIALLRYLSAQAQQIEWSKVHLFWGDERY 95 (268)
T ss_dssp HHHHHHHHHHHHGGGSCGGGEEEEESEEEC
T ss_pred chhHHHHHHHHHhhhhhheeeEEeeccccc
Confidence 56666666655 56788899999999974
No 334
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=22.82 E-value=1e+02 Score=25.05 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCCCeEEEEecC---cccHHHHHHHHhhCCCe-eEEecCCCC
Q 047490 196 SKGNKVMVFCNT---LNSSRAVDHFLNENQIS-TVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~---~~~~~~l~~~l~~~~~~-~~~~~~~~~ 233 (323)
.+..+++|||.+ ...+..++..|+..|+. +..+.|++.
T Consensus 105 ~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~ 146 (302)
T 3olh_A 105 GAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLR 146 (302)
T ss_dssp CSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHH
Confidence 456799999964 23578888889988874 777777643
No 335
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.76 E-value=1.7e+02 Score=23.40 Aligned_cols=47 Identities=6% Similarity=0.156 Sum_probs=33.5
Q ss_pred CeEEEEecCc--------------ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 199 NKVMVFCNTL--------------NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 199 ~~~lvf~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+-+||+++.. ..++.+.+.|+..|+.|.. +.+++..+..+.+++|.+
T Consensus 22 g~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 22 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVST 82 (278)
T ss_dssp CEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred CEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 4567776652 4677888888888887664 456777777777777765
No 336
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=22.76 E-value=1.5e+02 Score=23.41 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=41.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHH-HHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ-ERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..+++.. ..+...+...+.-|.+++||..-
T Consensus 27 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 27 AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 566888888888888888888887777777777777643 33333443332225677888764
No 337
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=22.70 E-value=53 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=22.9
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEe
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sa 138 (323)
+.+++||+|||.++-+ .....++..+... ++|+|+.+.
T Consensus 413 ~~~rlvvlDEA~kmD~----~~~~~~~~l~~~l-------glQliiatP 450 (483)
T 3euj_A 413 LPCRLLFLDQAARLDA----MSINTLFELCERL-------DMQLLIAAP 450 (483)
T ss_dssp CCCCEEEESSGGGSCH----HHHHHHHHHHHHT-------TCEEEEEES
T ss_pred CceeEEEEeccccCCH----HHHHHHHHHHHHc-------CCEEEEECc
Confidence 5899999999955422 3344444444432 457775443
No 338
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.66 E-value=75 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=17.3
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhh
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPL 119 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~ 119 (323)
-.++|+||+|.+....-...+..++..+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~ 156 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRIN 156 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhch
Confidence 5689999999987542233344444333
No 339
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.55 E-value=86 Score=21.49 Aligned_cols=80 Identities=9% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhccc
Q 047490 211 SRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRT 290 (323)
Q Consensus 211 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~ 290 (323)
.+...+.+++..+.+.++.=.||...=.++.+..++ ..++|++.|..........+...=...-|.+..+..+++.|+
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~--~~ipvI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAE--RNVPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQI 119 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHH--TCCSSCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHc--CCCCEEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHH
Confidence 333334455566666666555553333344455554 345666666543332222111111234566666666666555
Q ss_pred cc
Q 047490 291 AR 292 (323)
Q Consensus 291 ~R 292 (323)
.|
T Consensus 120 ~~ 121 (123)
T 2lpm_A 120 SK 121 (123)
T ss_dssp CS
T ss_pred Hh
Confidence 43
No 340
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=22.26 E-value=1.4e+02 Score=23.73 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=40.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..+++..+ .+...+...+.-|.+++||..-
T Consensus 47 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 47 RGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109 (279)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 4667888888877788888888777777777777776433 3333333332225677777754
No 341
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=22.25 E-value=96 Score=23.44 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=35.3
Q ss_pred CeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH----HHHHHHhccccCCCCCEEEEeccc
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE----RVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
++++|...+=.+|..+.+.+.....-+..+|.+..... -.++.+++++ ...+|+-+|-.+
T Consensus 45 k~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~--~G~~V~t~tH~l 108 (201)
T 1vp8_A 45 KHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRK--RGAKIVRQSHIL 108 (201)
T ss_dssp CEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHH--TTCEEEECCCTT
T ss_pred CEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHh--CCCEEEEEeccc
Confidence 58888888888998888877333333344554433221 1344455555 555566666553
No 342
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=22.16 E-value=1.2e+02 Score=20.44 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=48.4
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCH--HHHHHHHHhccccCCCCCEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPA--QERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~r~~~~~~f~~~~g~~~il 254 (323)
+.+.......+...+... +-.+. .+.+ .+...+.+....+.+.++.-.++. ..-.+.++..++......|+
T Consensus 12 vdd~~~~~~~l~~~L~~~---g~~v~-~~~~---~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii 84 (136)
T 3kto_A 12 VDHQKDARAALSKLLSPL---DVTIQ-CFAS---AESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTI 84 (136)
T ss_dssp ECSCHHHHHHHHHHHTTS---SSEEE-EESS---HHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEE
T ss_pred EcCCHHHHHHHHHHHHHC---CcEEE-EeCC---HHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEE
Confidence 344444445555555542 22332 3333 333333444455566666655555 44455555555422345566
Q ss_pred EEeccccc-----ccCCCCCEEEEcCCCCCchhhhhhhccc
Q 047490 255 VCTDLAAR-----GLDLDVDHVIMFDFPLNSIDYLHRTGRT 290 (323)
Q Consensus 255 v~t~~~~~-----Gid~~~~~vi~~~~p~s~~~~~Q~~GR~ 290 (323)
+.|..... .+..+++..+. .|.+..++.+++.++
T Consensus 85 ~~s~~~~~~~~~~~~~~ga~~~l~--KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 85 VMASSSDIPTAVRAMRASAADFIE--KPFIEHVLVHDVQQI 123 (136)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEE--SSBCHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcChHHhee--CCCCHHHHHHHHHHH
Confidence 65543221 11222333322 455666665555444
No 343
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=21.96 E-value=1.1e+02 Score=23.78 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=41.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHH-HHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE-RVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.++..+..+..+..++...+ .+...+...+.-|.+++||..-
T Consensus 35 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 35 AGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp HTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4667888888888888888888877777777777776443 3334444333225677787754
No 344
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=21.85 E-value=37 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHhccccCCCC
Q 047490 230 GEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 230 ~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
+.++..+|++++++|+. |..
T Consensus 59 ~~lt~~ek~elieeFn~--G~e 78 (90)
T 1jr5_A 59 SELTQEDKKTLIDEFNE--GFE 78 (90)
T ss_dssp HTCCHHHHHHHHTTSSS--SST
T ss_pred HHCCHHHHHHHHHHHhc--cch
Confidence 46899999999999998 754
No 345
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=21.72 E-value=66 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=11.7
Q ss_pred CcEEeecchhhhhc
Q 047490 92 IKYLVLDEADTMFD 105 (323)
Q Consensus 92 ~~~vIiDE~h~~~~ 105 (323)
..++++||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 111 PSIIFIDEIDAIAA 124 (285)
T ss_dssp SEEEEEETTHHHHB
T ss_pred CeEEEEECHHHhcc
Confidence 46899999999863
No 346
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=21.61 E-value=1.4e+02 Score=24.26 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCcEEeecchhhhhc
Q 047490 91 DIKYLVLDEADTMFD 105 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~ 105 (323)
...+|++||+|.+..
T Consensus 110 ~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 110 KPSIIFIDQVDALTG 124 (322)
T ss_dssp SSEEEEEECGGGGSC
T ss_pred CCeEEEechhhhhhc
Confidence 346899999999864
No 347
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.52 E-value=2.9e+02 Score=21.53 Aligned_cols=45 Identities=4% Similarity=0.021 Sum_probs=28.8
Q ss_pred ccCCCCccEEEEcCCH----HHHHHHHHHHHHhccccceeEEEeecCcc
Q 047490 12 LMKPRRPRAVVLCPTR----ELSEQVFRVAKSISHHARFRSTMVSGGGR 56 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~----~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 56 (323)
++..+...+-+++|.. .-..++.+.+++.....+..+.....+..
T Consensus 3 L~~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~ 51 (288)
T 3gv0_A 3 LRTGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHA 51 (288)
T ss_dssp ----CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSG
T ss_pred cccCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcc
Confidence 4555667788888853 35667777777777777888777665543
No 348
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=21.38 E-value=1.5e+02 Score=19.81 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=39.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHH--HHHcCCCCCCCCcE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQ--HIEDGNMVYGDIKY 94 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~--~~~~~~~~~~~~~~ 94 (323)
.-++|++|-.=---.-+++.+++.....++.+.....+... .....+++||++..|+.-.. -+... ..-.++..
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~---~~~~~~~~DvvLLgPQV~y~~~~ik~~-~~~~~ipV 81 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA---HYDIMGVYDLIILAPQVRSYYREMKVD-AERLGIQI 81 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS---CTTTGGGCSEEEECGGGGGGHHHHHHH-HTTTTCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH---HHhhccCCCEEEEChHHHHHHHHHHHH-hhhcCCcE
Confidence 45678887522222223334444444445554443322111 11122347999999984421 12211 11225678
Q ss_pred Eeecchhh
Q 047490 95 LVLDEADT 102 (323)
Q Consensus 95 vIiDE~h~ 102 (323)
.++|-.+.
T Consensus 82 ~vI~~~~Y 89 (108)
T 3nbm_A 82 VATRGMEY 89 (108)
T ss_dssp EECCHHHH
T ss_pred EEeCHHHh
Confidence 88887774
No 349
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=21.29 E-value=1.3e+02 Score=23.30 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=21.3
Q ss_pred ChHHHHHHHHcCCCCCCCCcEEeecchh
Q 047490 74 TPGRILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 74 Tp~~l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
||..+.+.+....+.++++.++-+||-=
T Consensus 56 Tp~~ly~~L~~~~i~w~~v~~f~~DEr~ 83 (232)
T 1vl1_A 56 TPLPVYEKLAEQKFPWNRIHFFLSDERY 83 (232)
T ss_dssp THHHHHHHHTTSCCCGGGEEEEESEEES
T ss_pred cHHHHHHHHHHcCCChhHEEEEeCeEee
Confidence 6777777776656778888888889864
No 350
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=21.27 E-value=2.1e+02 Score=23.66 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCCCCeEEEEecCcc-------cHHHHHHHHhhCCCeeEEe---------cCCCCHHHH-HHHHHhccccCCCCCEEEEe
Q 047490 195 LSKGNKVMVFCNTLN-------SSRAVDHFLNENQISTVNY---------HGEVPAQER-VENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 195 ~~~~~~~lvf~~~~~-------~~~~l~~~l~~~~~~~~~~---------~~~~~~~~r-~~~~~~f~~~~g~~~ilv~t 257 (323)
+.+|.++-|++++.. ..+...+.|++.|+.+... .++ +.++| ++..+.|.. ..++.++|+
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~D--p~i~aI~~~ 86 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRN--PNVSCIMST 86 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHC--TTEEEEEES
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhC--CCCCEEEEc
Confidence 346677888888753 2344556777788877652 122 23444 455666665 677778776
Q ss_pred c
Q 047490 258 D 258 (323)
Q Consensus 258 ~ 258 (323)
.
T Consensus 87 r 87 (336)
T 3sr3_A 87 I 87 (336)
T ss_dssp C
T ss_pred c
Confidence 4
No 351
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.26 E-value=2.1e+02 Score=24.18 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=39.0
Q ss_pred CCCCCeEEEEecCcc-------cHHHHHHHHhhCCCeeEEe---------cCCCCHHHH-HHHHHhccccCCCCCEEEEe
Q 047490 195 LSKGNKVMVFCNTLN-------SSRAVDHFLNENQISTVNY---------HGEVPAQER-VENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 195 ~~~~~~~lvf~~~~~-------~~~~l~~~l~~~~~~~~~~---------~~~~~~~~r-~~~~~~f~~~~g~~~ilv~t 257 (323)
+.+|.++-|++++.. ..+...+.|++.|+.+... .++ +.++| ++..+.|.. ..++.++|+
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~af~D--p~i~aI~~~ 116 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSG-TIKERAQEFNELVYN--PDITCIMST 116 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHTC--TTEEEEEES
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhC--CCCCEEEEc
Confidence 356778888888843 3345566788888887652 123 23444 556667776 677888876
Q ss_pred c
Q 047490 258 D 258 (323)
Q Consensus 258 ~ 258 (323)
.
T Consensus 117 r 117 (371)
T 3tla_A 117 I 117 (371)
T ss_dssp C
T ss_pred c
Confidence 5
No 352
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=21.13 E-value=96 Score=28.43 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=48.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc---CCC-C---CEEEeChHHHHHHHHcCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL---NNP-I---DMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---~Iii~Tp~~l~~~~~~~~~ 87 (323)
.++.++||.+.++..+..+.+.++.. ++....++|+.....+...+ +.+ . .++++|- . -...+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-----a-~g~Gl 483 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-----A-GGCGL 483 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG-----G-SCTTC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc-----c-ccCCc
Confidence 45779999999999888777766654 56788888887654443322 222 2 2566661 1 12346
Q ss_pred CCCCCcEEeecchh
Q 047490 88 VYGDIKYLVLDEAD 101 (323)
Q Consensus 88 ~~~~~~~vIiDE~h 101 (323)
.+...+.||+=+.+
T Consensus 484 nl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 484 NLIGANRLVMFDPD 497 (644)
T ss_dssp CCTTEEEEEECSCC
T ss_pred ccccCCEEEEECCC
Confidence 67777777765544
No 353
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.13 E-value=81 Score=21.35 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=53.5
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc--cCCCCCEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN--EDGDCPTL 254 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~g~~~il 254 (323)
+.+.......+...+... .+-.++..+.+...+ .+.+....+.+.++.-.++...-.+.++..++ ......|+
T Consensus 14 vdd~~~~~~~l~~~L~~~--~~~~~v~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 88 (143)
T 3cnb_A 14 IEDDKEFADMLTQFLENL--FPYAKIKIAYNPFDA---GDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVI 88 (143)
T ss_dssp ECSCHHHHHHHHHHHHHH--CTTCEEEEECSHHHH---HHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEE
T ss_pred EECCHHHHHHHHHHHHhc--cCccEEEEECCHHHH---HHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEE
Confidence 344444445555555431 233434455544433 33444455666766655554333445555544 11345566
Q ss_pred EEecccccc-----cCCCCCEEEEcCCCCCchhhhhhhccccc
Q 047490 255 VCTDLAARG-----LDLDVDHVIMFDFPLNSIDYLHRTGRTAR 292 (323)
Q Consensus 255 v~t~~~~~G-----id~~~~~vi~~~~p~s~~~~~Q~~GR~~R 292 (323)
+.|...... +...++.++. .|.+..++.+++.++-+
T Consensus 89 ~~s~~~~~~~~~~~~~~g~~~~l~--kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 89 AMTGALTDDNVSRIVALGAETCFG--KPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEE--SSCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCCcEEEe--CCCCHHHHHHHHHHHHH
Confidence 665433221 2223444433 57777777777766544
No 354
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=21.08 E-value=1.7e+02 Score=20.00 Aligned_cols=112 Identities=7% Similarity=0.022 Sum_probs=59.1
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
...+.+...-...+...+... ....++..+.+...+. +.+....+.+.++.-.++...-.+.++..++......|
T Consensus 18 iLivdd~~~~~~~l~~~L~~~--~~~~~v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 18 VVVGDDHPLFREGVVRALSLS--GSVNVVGEADDGAAAL---ELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp EEEECSSHHHHHHHHHHHHHH--SSEEEEEEESSHHHHH---HHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred EEEEcCCHHHHHHHHHHHhhC--CCeEEEEEeCCHHHHH---HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 444455555556666666543 1123333455544443 34444556777766555544444555555543244567
Q ss_pred EEEecccccc-----cCCCCCEEEEcCCCCCchhhhhhhccccc
Q 047490 254 LVCTDLAARG-----LDLDVDHVIMFDFPLNSIDYLHRTGRTAR 292 (323)
Q Consensus 254 lv~t~~~~~G-----id~~~~~vi~~~~p~s~~~~~Q~~GR~~R 292 (323)
++.|...... +..+++..+. .|.+..++.+++-++.+
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~--Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLL--KDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEE--TTCCHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEe--cCCCHHHHHHHHHHHHc
Confidence 7766543322 2223444444 57778888777766543
No 355
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=21.05 E-value=68 Score=26.75 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=11.3
Q ss_pred EEeecchhhhhcC
Q 047490 94 YLVLDEADTMFDR 106 (323)
Q Consensus 94 ~vIiDE~h~~~~~ 106 (323)
++|+||+|.+...
T Consensus 136 vlilDEi~~l~~~ 148 (384)
T 2qby_B 136 IIYLDEVDTLVKR 148 (384)
T ss_dssp EEEEETTHHHHHS
T ss_pred EEEEECHHHhccC
Confidence 8999999998754
No 356
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=20.95 E-value=3e+02 Score=21.40 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI 223 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 223 (323)
...+.+++....+.+.+..|||.+...+.-+.+.+++.|.
T Consensus 176 ~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 176 YSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp HHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 3455555654321126788999999999888888988776
No 357
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.94 E-value=1.3e+02 Score=24.61 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=13.4
Q ss_pred CCCCcEEeecchhhhhc
Q 047490 89 YGDIKYLVLDEADTMFD 105 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~ 105 (323)
....+++|+||+|.+..
T Consensus 108 ~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 108 SKGFKLIILDEADAMTN 124 (340)
T ss_dssp SCSCEEEEETTGGGSCH
T ss_pred CCCceEEEEeCCCCCCH
Confidence 34578999999998743
No 358
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=20.92 E-value=70 Score=28.60 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEV 232 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 232 (323)
+..++++||.+-..+...+..|+..|+ .+..+.|++
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 567999999998888999999999988 477777754
No 359
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=20.62 E-value=1.3e+02 Score=23.98 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=37.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHh----ccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHH---cCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSI----SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIE---DGNMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~---~~~~~~ 89 (323)
.+++.+.-...+++...++.+.+. ....+.-...+.|| +||..+.+.+. +..+.+
T Consensus 4 ~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgG------------------stP~~ly~~L~~~~~~~idw 65 (266)
T 3eb9_A 4 KPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGG------------------STPKMTYARLHDEHLNLLRE 65 (266)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCS------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC------------------CCHHHHHHHHHHHhhcCCCh
Confidence 345555555555666666666433 22222223333333 14555655554 235678
Q ss_pred -CCCcEEeecchh
Q 047490 90 -GDIKYLVLDEAD 101 (323)
Q Consensus 90 -~~~~~vIiDE~h 101 (323)
+++.++-+||--
T Consensus 66 ~~~v~~f~~DEr~ 78 (266)
T 3eb9_A 66 KRALRFFMGDERM 78 (266)
T ss_dssp SCCEEEEESEEES
T ss_pred HHcEEEEeeeeec
Confidence 999999999964
No 360
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=20.62 E-value=1.5e+02 Score=23.60 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHH-HHHHHHHhccccCCCCCEEEEec
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ-ERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.+.++++...+....+.+.+.+...+..+..+..++... ..+...++..+.-|.+++||...
T Consensus 51 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 51 DGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA 113 (283)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 466788888887778888888877676777777777643 33334444333225677777754
No 361
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.25 E-value=3.1e+02 Score=21.35 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
..+.+++.. .+.+.-|||.+...|.-+.+.+++.|..
T Consensus 175 ~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 175 DGAIKVLTG---ADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHTC----CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC---CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 444555543 3457789999988888888888876653
No 362
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=20.18 E-value=1.1e+02 Score=24.44 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=11.1
Q ss_pred cEEeecchhhhhc
Q 047490 93 KYLVLDEADTMFD 105 (323)
Q Consensus 93 ~~vIiDE~h~~~~ 105 (323)
.++++||+|.+..
T Consensus 132 ~vl~iDEid~l~~ 144 (309)
T 3syl_A 132 GVLFIDEAYYLYR 144 (309)
T ss_dssp SEEEEETGGGSCC
T ss_pred CEEEEEChhhhcc
Confidence 5899999998863
Done!