Query 047491
Match_columns 206
No_of_seqs 142 out of 320
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 3.9E-50 8.5E-55 311.0 7.8 101 42-142 1-101 (101)
2 PF06698 DUF1192: Protein of u 86.2 2.9 6.3E-05 30.3 5.7 35 121-155 23-57 (59)
3 COG3416 Uncharacterized protei 83.8 3.9 8.4E-05 36.8 6.6 65 82-146 11-75 (233)
4 PRK10803 tol-pal system protei 82.8 3.3 7.2E-05 36.7 5.8 44 119-162 54-100 (263)
5 PF13334 DUF4094: Domain of un 73.8 3.1 6.8E-05 32.3 2.6 25 117-141 71-95 (95)
6 PRK00888 ftsB cell division pr 70.9 11 0.00024 29.4 5.1 38 115-152 21-60 (105)
7 PF04977 DivIC: Septum formati 69.6 19 0.00041 25.1 5.7 33 120-152 18-50 (80)
8 PF12325 TMF_TATA_bd: TATA ele 69.3 21 0.00046 28.8 6.5 40 115-154 12-51 (120)
9 PF10883 DUF2681: Protein of u 68.8 13 0.00029 28.7 5.0 33 121-153 32-64 (87)
10 COG5509 Uncharacterized small 65.2 19 0.00042 26.7 5.0 29 121-149 27-55 (65)
11 PF09849 DUF2076: Uncharacteri 64.6 20 0.00043 32.3 6.1 63 82-144 11-73 (247)
12 PF07106 TBPIP: Tat binding pr 64.0 8.7 0.00019 31.4 3.4 80 66-145 18-105 (169)
13 PF09006 Surfac_D-trimer: Lung 62.6 20 0.00044 25.1 4.5 26 121-146 1-26 (46)
14 TIGR02209 ftsL_broad cell divi 59.5 27 0.00059 25.0 5.0 35 120-154 25-59 (85)
15 PF05529 Bap31: B-cell recepto 59.0 21 0.00045 29.7 4.9 36 119-154 154-189 (192)
16 smart00150 SPEC Spectrin repea 56.3 62 0.0014 22.1 6.5 44 111-154 23-66 (101)
17 smart00338 BRLZ basic region l 53.8 70 0.0015 22.2 6.2 35 120-154 27-61 (65)
18 PRK10265 chaperone-modulator p 53.8 26 0.00057 26.9 4.3 30 115-144 67-96 (101)
19 PF06305 DUF1049: Protein of u 52.7 26 0.00057 24.1 3.9 24 121-144 43-66 (68)
20 COG3074 Uncharacterized protei 52.6 43 0.00093 25.7 5.2 37 116-152 15-51 (79)
21 PF06295 DUF1043: Protein of u 51.8 46 0.001 26.6 5.6 35 120-154 26-60 (128)
22 PF13600 DUF4140: N-terminal d 51.6 43 0.00093 25.0 5.1 33 117-149 68-100 (104)
23 PF14282 FlxA: FlxA-like prote 51.3 30 0.00064 26.9 4.3 23 118-140 18-40 (106)
24 PF05120 GvpG: Gas vesicle pro 50.8 21 0.00046 27.1 3.3 37 112-148 7-43 (79)
25 PRK09039 hypothetical protein; 50.3 42 0.00092 31.0 5.9 28 119-146 137-164 (343)
26 cd04766 HTH_HspR Helix-Turn-He 46.6 38 0.00082 24.9 4.1 22 121-142 67-88 (91)
27 PF13591 MerR_2: MerR HTH fami 46.4 25 0.00054 26.0 3.1 23 117-139 61-83 (84)
28 PRK10884 SH3 domain-containing 46.3 60 0.0013 28.3 5.8 28 121-148 134-161 (206)
29 PF05308 Mito_fiss_reg: Mitoch 45.4 24 0.00052 31.8 3.4 29 126-154 122-153 (253)
30 PF12097 DUF3573: Protein of u 45.3 25 0.00053 33.8 3.5 22 120-141 43-64 (383)
31 PLN02523 galacturonosyltransfe 44.7 81 0.0017 31.9 7.1 55 85-144 145-201 (559)
32 PF12709 Kinetocho_Slk19: Cent 44.3 80 0.0017 24.6 5.6 38 119-156 49-86 (87)
33 PF14282 FlxA: FlxA-like prote 44.2 47 0.001 25.8 4.5 25 125-149 50-74 (106)
34 cd01111 HTH_MerD Helix-Turn-He 44.1 73 0.0016 24.6 5.5 28 117-144 78-105 (107)
35 PF08227 DASH_Hsk3: DASH compl 43.6 1.1E+02 0.0023 21.2 5.6 34 120-154 3-36 (45)
36 PF08657 DASH_Spc34: DASH comp 42.4 52 0.0011 29.7 5.1 38 111-148 172-209 (259)
37 PRK10803 tol-pal system protei 42.1 68 0.0015 28.5 5.7 36 118-153 60-95 (263)
38 PF15397 DUF4618: Domain of un 41.7 75 0.0016 29.0 5.9 56 82-145 52-107 (258)
39 PF05565 Sipho_Gp157: Siphovir 41.3 69 0.0015 26.5 5.3 71 83-157 13-85 (162)
40 PF04728 LPP: Lipoprotein leuc 41.2 1.4E+02 0.0029 21.6 6.1 25 121-145 12-36 (56)
41 PHA02047 phage lambda Rz1-like 40.3 1.1E+02 0.0024 24.6 6.0 24 125-148 33-56 (101)
42 PF04977 DivIC: Septum formati 39.5 61 0.0013 22.5 4.1 25 121-145 26-50 (80)
43 PF11333 DUF3135: Protein of u 39.3 50 0.0011 25.1 3.8 66 66-135 15-82 (83)
44 PRK11637 AmiB activator; Provi 39.0 88 0.0019 29.2 6.2 8 150-157 127-134 (428)
45 KOG1655 Protein involved in va 39.0 63 0.0014 29.0 4.9 23 75-102 2-24 (218)
46 PRK11677 hypothetical protein; 38.6 1.3E+02 0.0029 24.8 6.5 35 120-154 30-64 (134)
47 smart00338 BRLZ basic region l 37.3 1E+02 0.0022 21.3 4.9 30 118-147 32-61 (65)
48 PF00170 bZIP_1: bZIP transcri 37.1 1.4E+02 0.0031 20.7 5.8 34 120-153 27-60 (64)
49 PF00831 Ribosomal_L29: Riboso 37.1 67 0.0014 22.4 3.9 23 128-150 9-31 (58)
50 PF07334 IFP_35_N: Interferon- 36.9 58 0.0013 24.8 3.8 25 121-145 2-26 (76)
51 TIGR03021 pilP_fam type IV pil 36.8 57 0.0012 26.2 4.0 24 118-141 4-27 (119)
52 PF06005 DUF904: Protein of un 36.7 93 0.002 23.0 4.8 24 115-138 14-37 (72)
53 TIGR02894 DNA_bind_RsfA transc 35.9 1.2E+02 0.0025 26.2 5.9 35 121-155 113-147 (161)
54 TIGR02231 conserved hypothetic 34.9 90 0.002 29.9 5.7 35 120-154 72-106 (525)
55 TIGR02209 ftsL_broad cell divi 34.7 1.1E+02 0.0023 21.9 4.8 31 124-154 22-52 (85)
56 PF04999 FtsL: Cell division p 34.0 1.2E+02 0.0026 22.4 5.1 35 121-155 37-71 (97)
57 PF02996 Prefoldin: Prefoldin 34.0 1.5E+02 0.0032 22.3 5.7 35 120-154 78-112 (120)
58 PRK14127 cell division protein 33.9 1.1E+02 0.0024 24.5 5.1 30 121-150 39-68 (109)
59 TIGR00012 L29 ribosomal protei 33.7 78 0.0017 21.9 3.8 21 129-149 8-28 (55)
60 PF06818 Fez1: Fez1; InterPro 33.7 1.3E+02 0.0028 26.7 5.9 31 118-148 9-39 (202)
61 PRK13922 rod shape-determining 33.6 1.5E+02 0.0032 25.9 6.3 51 105-155 52-108 (276)
62 PHA02562 46 endonuclease subun 33.2 68 0.0015 30.2 4.5 11 92-102 149-159 (562)
63 COG5509 Uncharacterized small 33.0 50 0.0011 24.6 2.8 21 120-140 33-53 (65)
64 KOG2760 Vacuolar sorting prote 32.8 72 0.0016 31.3 4.6 70 73-142 140-225 (432)
65 CHL00154 rpl29 ribosomal prote 32.5 77 0.0017 23.2 3.8 22 128-149 14-35 (67)
66 PF15268 Dapper: Dapper 32.5 89 0.0019 32.6 5.4 29 121-149 55-83 (748)
67 PF05546 She9_MDM33: She9 / Md 32.0 1.6E+02 0.0034 26.3 6.2 43 103-147 18-60 (207)
68 PHA02047 phage lambda Rz1-like 31.8 2.4E+02 0.0052 22.7 6.6 54 120-173 35-88 (101)
69 PF03242 LEA_3: Late embryogen 31.8 18 0.00039 28.2 0.4 20 103-122 58-77 (93)
70 PRK09039 hypothetical protein; 31.3 1.3E+02 0.0028 27.9 5.8 30 119-148 144-173 (343)
71 KOG4196 bZIP transcription fac 31.0 2.4E+02 0.0051 23.8 6.8 18 94-111 54-71 (135)
72 PF11853 DUF3373: Protein of u 30.9 43 0.00093 33.2 2.8 34 112-146 18-51 (489)
73 cd00427 Ribosomal_L29_HIP Ribo 30.4 95 0.002 21.5 3.8 21 129-149 9-29 (57)
74 PF07716 bZIP_2: Basic region 30.0 1.7E+02 0.0037 19.8 5.0 25 121-145 27-51 (54)
75 TIGR00293 prefoldin, archaeal 30.0 1.5E+02 0.0033 22.8 5.3 26 123-148 3-28 (126)
76 PF00435 Spectrin: Spectrin re 29.4 1.9E+02 0.004 19.7 7.5 56 98-153 12-68 (105)
77 COG3105 Uncharacterized protei 29.3 2.3E+02 0.0049 24.0 6.4 33 122-154 37-69 (138)
78 PF04420 CHD5: CHD5-like prote 29.2 1.1E+02 0.0025 25.2 4.7 51 100-154 50-101 (161)
79 COG3416 Uncharacterized protei 29.2 69 0.0015 29.0 3.6 50 105-154 27-76 (233)
80 PF11471 Sugarporin_N: Maltopo 29.0 1.5E+02 0.0032 21.3 4.6 26 123-148 29-54 (60)
81 PF12325 TMF_TATA_bd: TATA ele 28.7 2.2E+02 0.0047 23.0 6.1 27 119-145 30-56 (120)
82 PRK15396 murein lipoprotein; P 28.5 1.5E+02 0.0032 22.5 4.8 29 120-148 26-54 (78)
83 PF12808 Mto2_bdg: Micro-tubul 28.4 2.1E+02 0.0046 20.3 5.2 42 97-139 8-49 (52)
84 PF15294 Leu_zip: Leucine zipp 27.9 1.5E+02 0.0032 27.5 5.6 38 111-149 118-155 (278)
85 cd00584 Prefoldin_alpha Prefol 27.7 1.8E+02 0.0038 22.5 5.3 27 123-149 3-29 (129)
86 PRK00295 hypothetical protein; 27.6 1.4E+02 0.003 21.7 4.4 7 139-145 32-38 (68)
87 PF04706 Dickkopf_N: Dickkopf 27.5 28 0.0006 24.5 0.7 16 41-56 21-36 (52)
88 PRK15422 septal ring assembly 27.2 2.1E+02 0.0046 22.1 5.4 25 117-141 16-40 (79)
89 PF07106 TBPIP: Tat binding pr 26.8 1.1E+02 0.0025 24.8 4.3 72 75-148 14-101 (169)
90 TIGR00293 prefoldin, archaeal 26.8 2.6E+02 0.0056 21.4 6.1 38 118-155 85-122 (126)
91 PF04012 PspA_IM30: PspA/IM30 26.6 2.1E+02 0.0046 24.0 6.0 39 97-142 8-46 (221)
92 PF08286 Spc24: Spc24 subunit 26.5 20 0.00044 28.0 -0.2 32 120-151 14-45 (118)
93 PF06696 Strep_SA_rep: Strepto 26.5 1.6E+02 0.0035 18.1 4.1 21 124-144 3-23 (25)
94 PRK00461 rpmC 50S ribosomal pr 26.4 1.1E+02 0.0023 23.6 3.8 19 130-148 12-30 (87)
95 PF14197 Cep57_CLD_2: Centroso 26.4 1.3E+02 0.0028 22.1 4.0 31 116-146 37-67 (69)
96 PF04340 DUF484: Protein of un 26.1 1.2E+02 0.0026 25.8 4.5 55 82-145 10-66 (225)
97 PRK00306 50S ribosomal protein 26.1 1.3E+02 0.0027 21.5 3.9 21 129-149 12-32 (66)
98 PF10883 DUF2681: Protein of u 26.1 3.1E+02 0.0068 21.2 6.4 28 121-148 18-45 (87)
99 COG2919 Septum formation initi 25.9 2.1E+02 0.0046 22.5 5.5 28 118-145 49-76 (117)
100 PF11819 DUF3338: Domain of un 25.7 2.6E+02 0.0057 23.4 6.2 47 118-164 31-77 (138)
101 PRK14549 50S ribosomal protein 25.6 1.2E+02 0.0026 22.1 3.8 21 129-149 15-35 (69)
102 PF05308 Mito_fiss_reg: Mitoch 25.2 71 0.0015 28.8 3.0 20 119-138 122-141 (253)
103 PRK03947 prefoldin subunit alp 25.1 2.6E+02 0.0057 22.0 5.9 35 120-154 7-41 (140)
104 PF06305 DUF1049: Protein of u 25.0 1.5E+02 0.0033 20.2 4.1 34 117-151 33-66 (68)
105 PRK14626 hypothetical protein; 24.7 1.2E+02 0.0027 24.0 4.0 27 119-145 5-31 (110)
106 COG1729 Uncharacterized protei 24.7 1.3E+02 0.0029 27.4 4.7 28 120-148 57-84 (262)
107 PRK02793 phi X174 lysis protei 24.6 1.5E+02 0.0032 21.8 4.1 7 139-145 35-41 (72)
108 PRK11239 hypothetical protein; 24.1 1.3E+02 0.0029 26.9 4.5 30 118-147 182-211 (215)
109 PF05064 Nsp1_C: Nsp1-like C-t 24.1 2.5E+02 0.0054 22.1 5.6 38 119-156 57-94 (116)
110 PRK14625 hypothetical protein; 24.0 1.1E+02 0.0024 24.4 3.6 26 121-146 4-29 (109)
111 PF14623 Vint: Hint-domain 23.7 29 0.00063 29.7 0.3 39 73-117 121-159 (162)
112 PRK14623 hypothetical protein; 23.6 1.2E+02 0.0025 24.1 3.6 26 121-146 3-28 (106)
113 PRK10698 phage shock protein P 23.5 3E+02 0.0065 24.0 6.5 52 97-148 9-60 (222)
114 PF11382 DUF3186: Protein of u 23.5 2E+02 0.0043 26.2 5.6 30 120-149 33-62 (308)
115 PRK13169 DNA replication intia 23.4 2.8E+02 0.0061 22.2 5.8 25 120-144 9-33 (110)
116 PF04102 SlyX: SlyX; InterPro 23.3 1.2E+02 0.0025 21.9 3.3 6 139-144 31-36 (69)
117 PF11559 ADIP: Afadin- and alp 23.3 2.2E+02 0.0048 22.7 5.3 16 76-91 29-44 (151)
118 PRK14622 hypothetical protein; 23.2 1.2E+02 0.0025 23.8 3.5 25 121-145 3-27 (103)
119 PRK14164 heat shock protein Gr 23.1 3.2E+02 0.007 24.3 6.6 37 112-148 70-106 (218)
120 PF01025 GrpE: GrpE; InterPro 23.1 2.8E+02 0.006 22.2 5.8 26 121-146 20-45 (165)
121 PF11853 DUF3373: Protein of u 22.9 59 0.0013 32.2 2.2 22 121-142 33-54 (489)
122 PF15300 INT_SG_DDX_CT_C: INTS 22.9 69 0.0015 23.6 2.0 26 82-107 24-51 (65)
123 PRK14141 heat shock protein Gr 22.9 2.6E+02 0.0055 24.7 5.9 29 120-148 39-67 (209)
124 TIGR02977 phageshock_pspA phag 22.8 3.3E+02 0.0071 23.4 6.5 49 97-145 9-57 (219)
125 cd00632 Prefoldin_beta Prefold 22.6 1.9E+02 0.0042 21.9 4.6 25 122-146 66-90 (105)
126 PF12718 Tropomyosin_1: Tropom 22.4 2.1E+02 0.0045 23.4 5.0 27 120-146 36-62 (143)
127 PRK00888 ftsB cell division pr 22.4 1.6E+02 0.0036 22.9 4.2 26 121-146 36-61 (105)
128 PF11336 DUF3138: Protein of u 22.4 1E+02 0.0023 30.7 3.7 25 119-143 25-49 (514)
129 PF04508 Pox_A_type_inc: Viral 22.4 1.4E+02 0.0031 18.1 3.0 18 121-138 3-20 (23)
130 cd00584 Prefoldin_alpha Prefol 22.1 3.6E+02 0.0078 20.7 6.1 35 120-154 88-122 (129)
131 cd00890 Prefoldin Prefoldin is 22.1 1.4E+02 0.0029 22.6 3.6 55 101-155 58-123 (129)
132 PRK11637 AmiB activator; Provi 22.0 2.4E+02 0.0052 26.4 5.9 6 67-72 14-19 (428)
133 PF09849 DUF2076: Uncharacteri 22.0 86 0.0019 28.3 2.9 44 105-148 27-70 (247)
134 PF11471 Sugarporin_N: Maltopo 22.0 1.7E+02 0.0037 21.0 3.9 26 120-145 33-58 (60)
135 PF10186 Atg14: UV radiation r 21.9 1.8E+02 0.004 24.7 4.8 11 43-53 2-12 (302)
136 PRK00587 hypothetical protein; 21.8 1.4E+02 0.003 23.5 3.7 25 121-145 3-27 (99)
137 PRK14149 heat shock protein Gr 21.8 3.2E+02 0.0069 23.8 6.2 29 119-147 43-71 (191)
138 PF10828 DUF2570: Protein of u 21.7 2.8E+02 0.006 21.5 5.4 25 114-138 13-37 (110)
139 PF13793 Pribosyltran_N: N-ter 21.6 48 0.001 26.1 1.1 46 43-89 68-114 (116)
140 KOG4552 Vitamin-D-receptor int 21.5 3.5E+02 0.0077 24.8 6.6 65 74-146 48-119 (272)
141 PRK04325 hypothetical protein; 21.4 2E+02 0.0043 21.2 4.3 19 130-148 27-45 (74)
142 PRK00736 hypothetical protein; 21.4 1.9E+02 0.0042 20.9 4.1 8 139-146 32-39 (68)
143 PRK03947 prefoldin subunit alp 21.4 3.7E+02 0.0079 21.1 6.1 37 119-155 94-130 (140)
144 TIGR03021 pilP_fam type IV pil 21.1 1.8E+02 0.0039 23.3 4.3 24 126-149 5-28 (119)
145 PF15483 DUF4641: Domain of un 21.0 95 0.0021 30.6 3.1 27 115-142 415-441 (445)
146 PRK14147 heat shock protein Gr 20.8 3.2E+02 0.0069 23.2 5.9 29 120-148 26-54 (172)
147 PF13600 DUF4140: N-terminal d 20.8 1.6E+02 0.0035 21.9 3.8 21 126-146 70-90 (104)
148 PHA02629 A-type inclusion body 20.8 2.2E+02 0.0048 20.7 4.2 33 112-144 19-51 (61)
149 PRK14624 hypothetical protein; 20.7 1.4E+02 0.0031 24.0 3.6 27 119-145 6-32 (115)
150 PF14257 DUF4349: Domain of un 20.7 2.2E+02 0.0047 24.7 5.1 28 117-144 160-187 (262)
151 PF11932 DUF3450: Protein of u 20.6 3.2E+02 0.0068 23.7 6.0 37 121-157 72-108 (251)
152 PRK03762 hypothetical protein; 20.4 1.5E+02 0.0032 23.4 3.6 25 121-145 7-31 (103)
153 PF07820 TraC: TraC-like prote 20.4 1.8E+02 0.0039 23.0 4.0 24 121-144 4-27 (92)
154 PF15619 Lebercilin: Ciliary p 20.3 3E+02 0.0065 23.8 5.8 28 119-146 12-39 (194)
155 PF07798 DUF1640: Protein of u 20.3 3.8E+02 0.0082 22.2 6.2 67 78-144 2-69 (177)
156 PF06295 DUF1043: Protein of u 20.2 1.5E+02 0.0033 23.6 3.7 21 128-148 27-47 (128)
157 KOG0242 Kinesin-like protein [ 20.2 2.1E+02 0.0046 29.2 5.5 66 75-140 280-366 (675)
158 PF03148 Tektin: Tektin family 20.1 2.4E+02 0.0051 26.5 5.5 44 112-155 317-360 (384)
159 PRK14161 heat shock protein Gr 20.0 3.3E+02 0.0072 23.3 5.9 28 120-147 27-54 (178)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=3.9e-50 Score=310.96 Aligned_cols=101 Identities=63% Similarity=1.111 Sum_probs=99.5
Q ss_pred CChHhHHhhhCCCCCCccccCCCCCCccchhhhhhhhchhhHHHHhhcCCCcchhhHHHHHHHhhhccccCCCCccHHHH
Q 047491 42 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAI 121 (206)
Q Consensus 42 ~CAACK~lRRrC~~~CilAPYFP~~~~~~F~~vhkvFG~sNI~k~Lq~lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I 121 (206)
+|||||||||||+++|+||||||++++++|.+||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 122 CQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 122 ~~Lq~qi~~lqaeLa~aq~eL 142 (206)
+.||+||+++++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.16 E-value=2.9 Score=30.28 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
|-.|+..|..|++|++++++++...+.+.+..-++
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998877666555444
No 3
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.79 E-value=3.9 Score=36.77 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=54.2
Q ss_pred hHHHHhhcCCCcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 82 NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 82 NI~k~Lq~lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.+|
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq 75 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQ 75 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555777778899999999999999999999998888888888888888888888888777655
No 4
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.75 E-value=3.3 Score=36.73 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCC
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA---LLYKEMGK 162 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~---~~~~~~~~ 162 (206)
..+..|++||+.||.|++.+|.++..++.|-.++.+ .+|.++|.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999998877666555554 55677764
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=73.78 E-value=3.1 Score=32.25 Aligned_cols=25 Identities=44% Similarity=0.512 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAE 141 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~e 141 (206)
-.-.|..|.+.|..|++||+.||++
T Consensus 71 Th~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 71 THEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456888999999999999988864
No 6
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.94 E-value=11 Score=29.42 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=27.1
Q ss_pred CccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 115 YGCAG--AICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 115 yGC~G--~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
+|--| .+.++++|++.++++++.++++...++.+...|
T Consensus 21 ~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 21 FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 477888888888888888887777766555444
No 7
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.65 E-value=19 Score=25.11 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
.+..+++++..++.+++..+.+...++.+...+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777888888888888887777776665555
No 8
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.26 E-value=21 Score=28.82 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 115 YGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 115 yGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
...+++|..|+.+|..++.|+..+|.++..++.+...+.+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999988877766555
No 9
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=68.75 E-value=13 Score=28.74 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
+..|+.+.+.|+.|.+.+++|+.+++.++.|.-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 566777777777777777777777776665543
No 10
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=65.23 E-value=19 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
|-.|.++|..||+|++++++|+.....-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~sr 55 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKASR 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 45678888888888888888887654333
No 11
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=64.56 E-value=20 Score=32.26 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=55.1
Q ss_pred hHHHHhhcCCCcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 82 NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 82 NI~k~Lq~lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
++..-|+.+....|+.-++.||-|+-.|.-|-+|=-+-.|..+++=|++++++|..++.+|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344557778888999999999999999999999999999999999999999999888888855
No 12
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.03 E-value=8.7 Score=31.40 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCccchhhhhhhhchhhHHHHhhcCCCcchh---hHHHHHHHhhhccccCCCCcc-----HHHHHHHHHHHHHHHHHHHH
Q 047491 66 TEPAKFTIAHRVFGASNIIKFLQELPESQRA---DAVSSMVYEASARIRDPVYGC-----AGAICQLQKQVSELQAQLAK 137 (206)
Q Consensus 66 ~~~~~F~~vhkvFG~sNI~k~Lq~lp~~~R~---dAv~SLvYEA~aR~rDPVyGC-----~G~I~~Lq~qi~~lqaeLa~ 137 (206)
.-..=|.|+|.-||-..|.|.|..|-.+.+- ..=...||=++--..+-+..- =.-|..|+.++..++.++..
T Consensus 18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345688999999999999999998665431 222456776665444322221 23467777777777777777
Q ss_pred HHHHHHHH
Q 047491 138 AQAEVVNM 145 (206)
Q Consensus 138 aq~eL~~~ 145 (206)
++++|..+
T Consensus 98 l~~eL~~L 105 (169)
T PF07106_consen 98 LEAELASL 105 (169)
T ss_pred HHHHHHHH
Confidence 77777665
No 13
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=62.61 E-value=20 Score=25.07 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
|..|.+|+..|+.+|..+|+-+..++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988887644
No 14
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.52 E-value=27 Score=25.04 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+.+++.++..++.++..++++...++.+.+.+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35567777777777777777777777666655544
No 15
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.96 E-value=21 Score=29.74 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
+....++.++++++.||..++.++..++-|..++..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678899999999999999999999999887754
No 16
>smart00150 SPEC Spectrin repeats.
Probab=56.34 E-value=62 Score=22.15 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 111 RDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 111 rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+++.+.+..|..+.++...++.++...+..+..+......|+.
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999888888877666555554
No 17
>smart00338 BRLZ basic region leucin zipper.
Probab=53.77 E-value=70 Score=22.21 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.|..|+.+++.|+.+...++.++..++.+...+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777766655555443
No 18
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=53.75 E-value=26 Score=26.90 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=26.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 115 YGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 115 yGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
+-.+++|..|-.||+.|++|+...+++|..
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999998865
No 19
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.74 E-value=26 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
...+++++.+++.+++.++.|+..
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666777777666666654
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.65 E-value=43 Score=25.67 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 116 GCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 116 GC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
-++-.|.-||-+|++|+.+-..+..|....|.+..+|
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 3566788899999888888877777766555554433
No 21
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.76 E-value=46 Score=26.63 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
-...|+++|++.+.||+.-|.++..|=.+-|.|+.
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~ 60 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLD 60 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888877777776555444443
No 22
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.55 E-value=43 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
--..+..|+.+|+.++.+++.++.++..++.|.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344888999999999999999988887766544
No 23
>PF14282 FlxA: FlxA-like protein
Probab=51.26 E-value=30 Score=26.93 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQA 140 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~ 140 (206)
...|..|++||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 55677777777777776655543
No 24
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=50.79 E-value=21 Score=27.07 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 112 DPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 112 DPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
-||.|.+-+.-+++.+.+.---+-+.+|.+|..++.+
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~ 43 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEA 43 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3666666666666666554444457778888776654
No 25
>PRK09039 hypothetical protein; Validated
Probab=50.28 E-value=42 Score=31.03 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
-.|..|++||+.|+.+|+.++++|...+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888877777775553
No 26
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=46.61 E-value=38 Score=24.93 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
|..|..|++.|+++|+..++++
T Consensus 67 ~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 67 ILELEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3348888888888888887766
No 27
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=46.43 E-value=25 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQ 139 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq 139 (206)
.+++|.+|-.+|+.|+.||...+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998765
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.29 E-value=60 Score=28.32 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
|..|+++.++|+.||..+++++...+.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668888888888888888888655444
No 29
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=45.44 E-value=24 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 047491 126 KQVSELQAQLAKAQAEVVNM---QCQQANLVA 154 (206)
Q Consensus 126 ~qi~~lqaeLa~aq~eL~~~---q~q~a~~~~ 154 (206)
++|..||.||+++|+||+.+ |.|.+.+..
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe~~~~~~~ 153 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQEQSNSTTP 153 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 45566666666666666543 544444433
No 30
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=45.28 E-value=25 Score=33.83 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAE 141 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~e 141 (206)
.|.+||+||..||+||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777777766666655544
No 31
>PLN02523 galacturonosyltransferase
Probab=44.69 E-value=81 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHhhcCCCc--chhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 85 KFLQELPES--QRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 85 k~Lq~lp~~--~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
..+++||.+ +|-.+|+.++++|.. +|-|..+|.+|+..|..++.++..++.+-.-
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~ 201 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAF 201 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677754 677899999999983 4557789999999999999999888766543
No 32
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.31 E-value=80 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALL 156 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~ 156 (206)
.-|..|+.++..+..|...++.+|...+.....|+.++
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777888888888888888888877776666776653
No 33
>PF14282 FlxA: FlxA-like protein
Probab=44.23 E-value=47 Score=25.79 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 125 QKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 125 q~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
+.++..|+++|..++++|..++.|.
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 34
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=44.13 E-value=73 Score=24.57 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
|...+..+..+|++.+++|..++.+|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888888888877765
No 35
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=43.64 E-value=1.1e+02 Score=21.17 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
-+.+|..|+..|++-|+.+.+.|..+-.|- +.+.
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~ 36 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQA-NSIR 36 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHH
Confidence 367899999999999999988887665554 4443
No 36
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=42.43 E-value=52 Score=29.72 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=33.4
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 111 RDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 111 rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.-|+.|.-..|..|.++.+.+..+++..+++++..+.|
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQ 209 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999875433
No 37
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.09 E-value=68 Score=28.48 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
..-|..||++|.+|+.++...+.+|..++.++..+-
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998877665544
No 38
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.70 E-value=75 Score=29.03 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=36.1
Q ss_pred hHHHHhhcCCCcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 82 NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 82 NI~k~Lq~lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+++.+|+.-...+..+|-..| -|..-+. --.++.|++|+..|.+.+..++.||..+
T Consensus 52 ~~i~~le~~~~~~l~~ak~eL-qe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAKAEL-QEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHccChHHHHHHHHHH-HHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555554443333 3333332 2457889999999999999999888654
No 39
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=41.28 E-value=69 Score=26.46 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=50.3
Q ss_pred HHHHhhc--CCCcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 83 IIKFLQE--LPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALLY 157 (206)
Q Consensus 83 I~k~Lq~--lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~~ 157 (206)
+..++.+ ++++.-.|++.+| .....+-+-|++.+|..++..++.+++|..+.++.-...+-+...|-..+.
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i----~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESI----EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 3444445555553 445677889999999999999999999999988877766666666666554
No 40
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.22 E-value=1.4e+02 Score=21.63 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|..|..+|.+|..++..++.++...
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655443
No 41
>PHA02047 phage lambda Rz1-like protein
Probab=40.30 E-value=1.1e+02 Score=24.61 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 125 QKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 125 q~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
+++.+++.++|..++.++..+|.|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~ 56 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRH 56 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777666655
No 42
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.50 E-value=61 Score=22.51 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|..|+.+++.++.+....+.++..+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666655555555555554
No 43
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=39.32 E-value=50 Score=25.14 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCccchhhhhhhhchhhHHHHhhcCCCcch--hhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHH
Q 047491 66 TEPAKFTIAHRVFGASNIIKFLQELPESQR--ADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQL 135 (206)
Q Consensus 66 ~~~~~F~~vhkvFG~sNI~k~Lq~lp~~~R--~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeL 135 (206)
++|+.|....+ .-|-.++...|++.| -.++.+-|=---.|.++|+..|+-+...++.++..++..|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677765442 456678888998754 3445555555567889999999999999999998887654
No 44
>PRK11637 AmiB activator; Provisional
Probab=39.04 E-value=88 Score=29.20 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 047491 150 ANLVALLY 157 (206)
Q Consensus 150 a~~~~~~~ 157 (206)
+..+...|
T Consensus 127 ~~rlra~Y 134 (428)
T PRK11637 127 AAQLDAAF 134 (428)
T ss_pred HHHHHHHH
Confidence 33444444
No 45
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.96 E-value=63 Score=29.01 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=13.7
Q ss_pred hhhhchhhHHHHhhcCCCcchhhHHHHH
Q 047491 75 HRVFGASNIIKFLQELPESQRADAVSSM 102 (206)
Q Consensus 75 hkvFG~sNI~k~Lq~lp~~~R~dAv~SL 102 (206)
||+||..+- ..|+..-.++..++
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v 24 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSV 24 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHH
Confidence 799998862 24444444555554
No 46
>PRK11677 hypothetical protein; Provisional
Probab=38.58 E-value=1.3e+02 Score=24.81 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
....|++++++.+.||..-|.|+..|=.+-|.|+.
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~ 64 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLD 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777666444444443
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=37.30 E-value=1e+02 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQC 147 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~ 147 (206)
-+-|..|+.+...|+.++..++.++..+..
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777766553
No 48
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.14 E-value=1.4e+02 Score=20.65 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
.|..|+.++..|+.+...++.++..++-....|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777766655554443
No 49
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=37.06 E-value=67 Score=22.43 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 128 VSELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 128 i~~lqaeLa~aq~eL~~~q~q~a 150 (206)
.++|+.+|..++.+|.+++.|++
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777766666653
No 50
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=36.95 E-value=58 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|..|+++..+|+.+|.++.+||...
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999998888888653
No 51
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=36.80 E-value=57 Score=26.18 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAE 141 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~e 141 (206)
+|-+..||.|...+++++++++.+
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq 27 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQ 27 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887777666543
No 52
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.68 E-value=93 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=16.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Q 047491 115 YGCAGAICQLQKQVSELQAQLAKA 138 (206)
Q Consensus 115 yGC~G~I~~Lq~qi~~lqaeLa~a 138 (206)
...+-.|..|+.++..|+.+-..+
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345677888888888888864333
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.93 E-value=1.2e+02 Score=26.17 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
+..|++++..|+.++.....++..++..-..|+.+
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777766666666665
No 54
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.93 E-value=90 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.|..|+.+|..++.+++.+++++...+.+.+-|-.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998887766644433
No 55
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.73 E-value=1.1e+02 Score=21.91 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 124 LQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 124 Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+.++..++.++..++.++...+.+...|-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555555544444
No 56
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=34.02 E-value=1.2e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
+..+..++++++.+...++.|-.+++...+.+...
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 45566667777777777777776666666655543
No 57
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=33.99 E-value=1.5e+02 Score=22.28 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+..|++++..++.++...+.++..++.+...+..
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888777666554444
No 58
>PRK14127 cell division protein GpsB; Provisional
Probab=33.91 E-value=1.1e+02 Score=24.54 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a 150 (206)
+-.|..++..|+.++..++.+|..++.|..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566777777777777777777665543
No 59
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=33.74 E-value=78 Score=21.91 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~ 149 (206)
.+|+++|..++.+|.+++.|+
T Consensus 8 ~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 8 EELAKKLDELKKELFELRFQK 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666554
No 60
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.68 E-value=1.3e+02 Score=26.71 Aligned_cols=31 Identities=32% Similarity=0.573 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.|-|+-|++|+.+.|+|++.=-.||+.++.|
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5889999999999999987766777666555
No 61
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.56 E-value=1.5e+02 Score=25.92 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=30.3
Q ss_pred hhhccccCCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 047491 105 EASARIRDPVYGCAG---AICQLQKQVSELQAQLAKAQAEVVNM---QCQQANLVAL 155 (206)
Q Consensus 105 EA~aR~rDPVyGC~G---~I~~Lq~qi~~lqaeLa~aq~eL~~~---q~q~a~~~~~ 155 (206)
..-.+..+.+.+.+. .+..|+.+.++|++|++..+.++..+ +.+.++|-++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 52 RVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443 35667778888888888888877754 3333444444
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.24 E-value=68 Score=30.21 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=5.3
Q ss_pred CcchhhHHHHH
Q 047491 92 ESQRADAVSSM 102 (206)
Q Consensus 92 ~~~R~dAv~SL 102 (206)
+..|...+..|
T Consensus 149 ~~er~~il~~l 159 (562)
T PHA02562 149 APARRKLVEDL 159 (562)
T ss_pred hHhHHHHHHHH
Confidence 34455555544
No 63
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.96 E-value=50 Score=24.59 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQA 140 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~ 140 (206)
.|-.||.+|++|++||++-.+
T Consensus 33 RIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 33 RIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 367788888888888876543
No 64
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.75 E-value=72 Score=31.27 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=42.4
Q ss_pred hhhhhhchhhHHHHhhcCCCcchhhHHHHH-HH--hhhccccCC-------------CCccHHHHHHHHHHHHHHHHHHH
Q 047491 73 IAHRVFGASNIIKFLQELPESQRADAVSSM-VY--EASARIRDP-------------VYGCAGAICQLQKQVSELQAQLA 136 (206)
Q Consensus 73 ~vhkvFG~sNI~k~Lq~lp~~~R~dAv~SL-vY--EA~aR~rDP-------------VyGC~G~I~~Lq~qi~~lqaeLa 136 (206)
.+..+|-.+.=.++++++-++.+..+.+-. += +-+.|.--| --|-.|+-.+|+.|+.....-|.
T Consensus 140 ~iqLsFR~~g~~~F~~~l~ee~~~r~we~~~~s~s~~~~r~s~~~~e~~~~~~~t~r~vGI~giEr~~e~q~~~td~~i~ 219 (432)
T KOG2760|consen 140 FIQLSFRGSGSVDFLEALLEEKNKRIWERNSVSESGVDMRKSSPSHEYEVPFIGTLRMVGISGIERSLEEQLKKTDKTIN 219 (432)
T ss_pred EEEEEecCCCcHHHHHHHHHHHHHHHHHhccccccccccccCcccccccccccceeeeechhHHHHHHHHHHHhcchhHH
Confidence 677888888888888888776655443211 11 112222222 56888998999888766555554
Q ss_pred HHHHHH
Q 047491 137 KAQAEV 142 (206)
Q Consensus 137 ~aq~eL 142 (206)
.|=..|
T Consensus 220 ~AFqDL 225 (432)
T KOG2760|consen 220 NAFQDL 225 (432)
T ss_pred HHHHHH
Confidence 444444
No 65
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=32.50 E-value=77 Score=23.15 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 128 VSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 128 i~~lqaeLa~aq~eL~~~q~q~ 149 (206)
+++|+++|..++.||-+++.|+
T Consensus 14 ~~eL~~~l~elk~elf~LRfq~ 35 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLKK 35 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777766664
No 66
>PF15268 Dapper: Dapper
Probab=32.48 E-value=89 Score=32.63 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
|..|++|++.|+.+-.-++++|..+..|.
T Consensus 55 ~~~L~~ql~~lr~~d~gl~~hl~~L~~qi 83 (748)
T PF15268_consen 55 LLALREQLSRLRRQDAGLKTHLQQLDQQI 83 (748)
T ss_pred hhhhhhhhHHhhcCChhHHHHHHHHHHHH
Confidence 44555555555555444555555444443
No 67
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.96 E-value=1.6e+02 Score=26.31 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=33.7
Q ss_pred HHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 103 VYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQC 147 (206)
Q Consensus 103 vYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~ 147 (206)
+..|.-++. =|-| |..|-.|+..|..++.+|+.++.++...+.
T Consensus 18 i~~as~~lN-d~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~ 60 (207)
T PF05546_consen 18 IFTASQALN-DVTG-YSEIEKLKKSIEELEDELEAARQEVREAKA 60 (207)
T ss_pred HHHHHHHHH-hccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444 4667 999999999999999999999988866543
No 68
>PHA02047 phage lambda Rz1-like protein
Probab=31.79 E-value=2.4e+02 Score=22.72 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALLYKEMGKSPQPNSPQSVD 173 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~~~~~~~~~~~~~~~~~~ 173 (206)
.+..|..|++.++.++...|.+..++..+...-..-|-..+.+.+.-.+++.|.
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPp 88 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPP 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh
Confidence 467899999999999999998887765443222222224445565555555543
No 69
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=31.78 E-value=18 Score=28.21 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=16.4
Q ss_pred HHhhhccccCCCCccHHHHH
Q 047491 103 VYEASARIRDPVYGCAGAIC 122 (206)
Q Consensus 103 vYEA~aR~rDPVyGC~G~I~ 122 (206)
-.|-..|++|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56678999999999986654
No 70
>PRK09039 hypothetical protein; Validated
Probab=31.27 E-value=1.3e+02 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.-|..|+.|+..++++|+.++.+....+.|
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444333
No 71
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=30.95 E-value=2.4e+02 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=12.7
Q ss_pred chhhHHHHHHHhhhcccc
Q 047491 94 QRADAVSSMVYEASARIR 111 (206)
Q Consensus 94 ~R~dAv~SLvYEA~aR~r 111 (206)
||..+.+-==|-+++|++
T Consensus 54 QrRRTLKNRGYA~sCR~K 71 (135)
T KOG4196|consen 54 QRRRTLKNRGYAQSCRVK 71 (135)
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 455666666788888865
No 72
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.91 E-value=43 Score=33.17 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 112 DPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 112 DPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.|.....--|..|| ||++|++||+.+++|+..++
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccc
Confidence 34444444455555 88888888888888876543
No 73
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=30.35 E-value=95 Score=21.54 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~ 149 (206)
.+|+.+|..++.||.+++.|+
T Consensus 9 ~eL~~~l~~l~~elf~Lr~q~ 29 (57)
T cd00427 9 EELQEKLDELKKELFNLRFQK 29 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655554
No 74
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.00 E-value=1.7e+02 Score=19.76 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+..|+.++..|+.+...++.++..+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665544
No 75
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.95 E-value=1.5e+02 Score=22.76 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.|+.+++.++.++...+.++..+...
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~ 28 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRAL 28 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444433
No 76
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=29.44 E-value=1.9e+02 Score=19.72 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHHHHhhhccc-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 98 AVSSMVYEASARI-RDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 98 Av~SLvYEA~aR~-rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
.+..-+-++...+ ..++.+-...+..+..++..++.++...+.++..+......|+
T Consensus 12 ~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~ 68 (105)
T PF00435_consen 12 ELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI 68 (105)
T ss_dssp HHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 4445889999999999999999999999888877765555553
No 77
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.25 E-value=2.3e+02 Score=23.98 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 122 CQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 122 ~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.++|.+++.+|.+|..-|.||+.|=.+-|.|+.
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlk 69 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHFARSAELLK 69 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888877666666654
No 78
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.21 E-value=1.1e+02 Score=25.21 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=34.5
Q ss_pred HHHHHhhhc-cccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 100 SSMVYEASA-RIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 100 ~SLvYEA~a-R~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
..+.-|.++ -.+| =+.--.+|+++++.+++||+..++++...+..-...+.
T Consensus 50 ~~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 50 LQLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp HHHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 3444 56677789999999999999999998776655443333
No 79
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.20 E-value=69 Score=29.03 Aligned_cols=50 Identities=26% Similarity=0.224 Sum_probs=32.6
Q ss_pred hhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 105 EASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 105 EA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
+|++++.+=|-+---.-..|-+.+-.+++-|++++.+|++++.+.+.|-+
T Consensus 27 ~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 27 QAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444445566677777788899999999888777665544
No 80
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.00 E-value=1.5e+02 Score=21.33 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.++++|+.|+.+|..++.++...+-+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEAR 54 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888888887777777654433
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.71 E-value=2.2e+02 Score=23.03 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|-|..|++++..++++-..+.+||+.+
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888877777777777665
No 82
>PRK15396 murein lipoprotein; Provisional
Probab=28.46 E-value=1.5e+02 Score=22.54 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
-|-+|+.+++.|+.+...++.+...++.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~ 54 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSD 54 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888887777777666543
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.38 E-value=2.1e+02 Score=20.28 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=29.6
Q ss_pred hHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 047491 97 DAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQ 139 (206)
Q Consensus 97 dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq 139 (206)
+...-|.-|=++|..|+ .|+---|..|..+...|+++|...|
T Consensus 8 ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 8 ELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777778888887 4666667777777777777776554
No 84
>PF15294 Leu_zip: Leucine zipper
Probab=27.89 E-value=1.5e+02 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=31.4
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 111 RDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 111 rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
--|+.+. |.+--|+.+|.+|++|..++++.|..++-|.
T Consensus 118 L~pl~e~-g~~~ll~kEi~rLq~EN~kLk~rl~~le~~a 155 (278)
T PF15294_consen 118 LEPLNES-GGSELLNKEIDRLQEENEKLKERLKSLEKQA 155 (278)
T ss_pred ccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466655 8889999999999999999999998877663
No 85
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.66 E-value=1.8e+02 Score=22.50 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
.|+.+++.++.++...++++..++.+.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 29 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAI 29 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 86
>PRK00295 hypothetical protein; Provisional
Probab=27.56 E-value=1.4e+02 Score=21.68 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 047491 139 QAEVVNM 145 (206)
Q Consensus 139 q~eL~~~ 145 (206)
+.+|..+
T Consensus 32 q~~I~~L 38 (68)
T PRK00295 32 QRVIERL 38 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 87
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=27.47 E-value=28 Score=24.51 Aligned_cols=16 Identities=38% Similarity=0.968 Sum_probs=14.5
Q ss_pred CCChHhHHhhhCCCCC
Q 047491 41 SPCAACKILRRRCADK 56 (206)
Q Consensus 41 ~~CAACK~lRRrC~~~ 56 (206)
+.|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999865
No 88
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.22 E-value=2.1e+02 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAE 141 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~e 141 (206)
.+-.|.-||.+|++|+.+-..+..+
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777765544443
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.81 E-value=1.1e+02 Score=24.83 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=38.3
Q ss_pred hhhhchhhHHHHhhc-CCCcchhhHHHHHHHhhhccccCCCCccHHH---------------HHHHHHHHHHHHHHHHHH
Q 047491 75 HRVFGASNIIKFLQE-LPESQRADAVSSMVYEASARIRDPVYGCAGA---------------ICQLQKQVSELQAQLAKA 138 (206)
Q Consensus 75 hkvFG~sNI~k~Lq~-lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~---------------I~~Lq~qi~~lqaeLa~a 138 (206)
.|=|++.+|..-|.. +.-..=..++.+|+=+.....+ +||=.-+ +..|..+|.+|+.||..+
T Consensus 14 NRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K--~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l 91 (169)
T PF07106_consen 14 NRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEK--EYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAEL 91 (169)
T ss_pred CCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeee--eecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 456777777776664 3433444556666655444333 5664433 444455555555555555
Q ss_pred HHHHHHHHHH
Q 047491 139 QAEVVNMQCQ 148 (206)
Q Consensus 139 q~eL~~~q~q 148 (206)
+.++..++..
T Consensus 92 ~~~~k~l~~e 101 (169)
T PF07106_consen 92 KKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 90
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.76 E-value=2.6e+02 Score=21.45 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
--.+..|++++..++.++...+..+...+-|...+.+.
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999999999998888777766654
No 91
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.59 E-value=2.1e+02 Score=24.01 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=20.4
Q ss_pred hHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 97 DAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 97 dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..+
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~ 46 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQAL 46 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677776 334444444444444444333
No 92
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=26.54 E-value=20 Score=28.01 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 151 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~ 151 (206)
.+..|+.+|..++.+|+..+.++..++.|..+
T Consensus 14 ~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 14 ELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp -----------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46677888888888888888888777666544
No 93
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=26.48 E-value=1.6e+02 Score=18.08 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 124 LQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 124 Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
.|..+..-++||+++|.++..
T Consensus 3 Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456677778888888777654
No 94
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=26.44 E-value=1.1e+02 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047491 130 ELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 130 ~lqaeLa~aq~eL~~~q~q 148 (206)
+|+.+|..++.||.++++|
T Consensus 12 EL~e~L~elkkELf~LR~q 30 (87)
T PRK00461 12 ELEKLVIELKAELFTLRFK 30 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 95
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=26.36 E-value=1.3e+02 Score=22.07 Aligned_cols=31 Identities=6% Similarity=0.149 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 116 GCAGAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 116 GC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
|.+.-+...-.++..|++|+...+.||...+
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555667777777777777765543
No 96
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=26.13 E-value=1.2e+02 Score=25.78 Aligned_cols=55 Identities=13% Similarity=0.454 Sum_probs=22.3
Q ss_pred hHHHHhhcCCC--cchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 82 NIIKFLQELPE--SQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 82 NI~k~Lq~lp~--~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.|...|++=|. .+.++++..|. +..|. -|+|+-.++|++.|+++....+.+|..+
T Consensus 10 ~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 10 DVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555553 45566666553 44453 3689999999999999988888887655
No 97
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=26.11 E-value=1.3e+02 Score=21.52 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~ 149 (206)
++|+.+|..++.||.+++.|+
T Consensus 12 ~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 12 EELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655554
No 98
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.07 E-value=3.1e+02 Score=21.23 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
+..+.+++..++.+.+++++|...++.+
T Consensus 18 ~~y~~~k~~ka~~~~~kL~~en~qlk~E 45 (87)
T PF10883_consen 18 LAYLWWKVKKAKKQNAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766666666544433
No 99
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=25.85 E-value=2.1e+02 Score=22.48 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+..+..++.++..+++|++...++-..+
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l 76 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTAL 76 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777776665555443
No 100
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=25.72 E-value=2.6e+02 Score=23.44 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALLYKEMGKSP 164 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~~~~~~~~~ 164 (206)
..++..|+.+-+.|+..|+.=-.||..+=.++|.|++.+.-|..-.|
T Consensus 31 ~e~~~~Lk~rk~~Lee~L~~kl~ELk~lClrEAELTG~LP~E~PL~p 77 (138)
T PF11819_consen 31 KERLRALKKRKQALEERLAQKLEELKKLCLREAELTGELPPEYPLEP 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCCC
Confidence 56788899999999999998889999999999999998766664333
No 101
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=25.62 E-value=1.2e+02 Score=22.07 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~ 149 (206)
++|+.+|...+.||.+++.|+
T Consensus 15 ~eL~~~l~elk~eLf~LR~q~ 35 (69)
T PRK14549 15 EEREEKLEELKLELLKERAQA 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
No 102
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=25.24 E-value=71 Score=28.81 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKA 138 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~a 138 (206)
.-|..||.+|..|++|||+.
T Consensus 122 qKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555
No 103
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.08 E-value=2.6e+02 Score=21.95 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
-+..|+.+++.++.++...+.++..+..+...+..
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677766666666666555444333
No 104
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.97 E-value=1.5e+02 Score=20.22 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 151 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~ 151 (206)
.+|.+..+-.. -.++.++.+.+.++..++.+.++
T Consensus 33 llg~l~~~~~~-~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 33 LLGWLLSLPSR-LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555444 47788888888888877665544
No 105
>PRK14626 hypothetical protein; Provisional
Probab=24.72 E-value=1.2e+02 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|-+..+.+|.+.+|.++..+|++|...
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~ 31 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKE 31 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457788899999999999999999874
No 106
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.69 E-value=1.3e+02 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.|-.|++||..++.+++..+. +..+|.|
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q 84 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQ 84 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHH
Confidence 477899999999999988885 3333333
No 107
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.56 E-value=1.5e+02 Score=21.78 Aligned_cols=7 Identities=14% Similarity=0.472 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047491 139 QAEVVNM 145 (206)
Q Consensus 139 q~eL~~~ 145 (206)
+.+|..+
T Consensus 35 q~~I~~L 41 (72)
T PRK02793 35 EMEMAKL 41 (72)
T ss_pred HHHHHHH
Confidence 3333333
No 108
>PRK11239 hypothetical protein; Provisional
Probab=24.11 E-value=1.3e+02 Score=26.92 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQC 147 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~ 147 (206)
.+.+..|+.+|..|++|++.+++++..+..
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999888888877543
No 109
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.09 E-value=2.5e+02 Score=22.07 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALL 156 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~ 156 (206)
..|..|+.++..++..=.++..+|..+..|+..|-..+
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888898888876
No 110
>PRK14625 hypothetical protein; Provisional
Probab=24.01 E-value=1.1e+02 Score=24.36 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
+..+.+|.+.+|.++..+|.+|.+..
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~ 29 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETT 29 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 67788899999999999999998743
No 111
>PF14623 Vint: Hint-domain
Probab=23.75 E-value=29 Score=29.67 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=28.9
Q ss_pred hhhhhhchhhHHHHhhcCCCcchhhHHHHHHHhhhccccCCCCcc
Q 047491 73 IAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGC 117 (206)
Q Consensus 73 ~vhkvFG~sNI~k~Lq~lp~~~R~dAv~SLvYEA~aR~rDPVyGC 117 (206)
.+|.+||...|.+-|..|+.-.-. +.+.....|||..|-
T Consensus 121 raH~fFG~~~V~~~L~~L~~~~~G------~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 121 RAHAFFGDNAVVRDLASLPGFANG------VVECRGVKRDPETGL 159 (162)
T ss_pred EeecccCcHHHHHHHHhCCCCCCC------EEEecceEECccccc
Confidence 489999999999999999864222 344555588887764
No 112
>PRK14623 hypothetical protein; Provisional
Probab=23.65 E-value=1.2e+02 Score=24.14 Aligned_cols=26 Identities=8% Similarity=0.181 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
+..|.+|.+.+|.++..+|++|.+..
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~ 28 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVL 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 67788899999999999999998754
No 113
>PRK10698 phage shock protein PspA; Provisional
Probab=23.50 E-value=3e+02 Score=23.99 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=31.9
Q ss_pred hHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 97 DAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 97 dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
+++++=+-++--+..||+-.-==+|..++..+..++..++.+.++-..++.|
T Consensus 9 ~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~ 60 (222)
T PRK10698 9 DIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60 (222)
T ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666667775555666667777777777776665555444433
No 114
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.50 E-value=2e+02 Score=26.20 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
++..|+.++..|+.|...+++|+..++.|.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQL 62 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555543
No 115
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.39 E-value=2.8e+02 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
.+..|+++|..+..++..++.++..
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555555555543
No 116
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.26 E-value=1.2e+02 Score=21.90 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047491 139 QAEVVN 144 (206)
Q Consensus 139 q~eL~~ 144 (206)
+.+|..
T Consensus 31 q~~I~~ 36 (69)
T PF04102_consen 31 QRQIDR 36 (69)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 117
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.25 E-value=2.2e+02 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=9.8
Q ss_pred hhhchhhHHHHhhcCC
Q 047491 76 RVFGASNIIKFLQELP 91 (206)
Q Consensus 76 kvFG~sNI~k~Lq~lp 91 (206)
.-+...+|++.|..|-
T Consensus 29 ~~~~~~~vin~i~~Ll 44 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLL 44 (151)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3455566777776663
No 118
>PRK14622 hypothetical protein; Provisional
Probab=23.16 E-value=1.2e+02 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+..|.+|.+++|.++..+|++|.+.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~ 27 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEI 27 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999764
No 119
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.07 E-value=3.2e+02 Score=24.29 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.1
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 112 DPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 112 DPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
||-----+.|..|+.++.+++..+.+++++..|++..
T Consensus 70 ~~~~~~~~~~~~le~el~el~d~llR~~AE~eN~RkR 106 (218)
T PRK14164 70 DPELADDGEASTVEAQLAERTEDLQRVTAEYANYRRR 106 (218)
T ss_pred CcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344889999999999999999999999998554
No 120
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.06 E-value=2.8e+02 Score=22.15 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
|..|+.++..++.++.+.++++.+++
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777777777777776663
No 121
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.94 E-value=59 Score=32.24 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
|-.|++||++||+|+...+.++
T Consensus 33 ie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHhhccccccc
Confidence 4445555555555554444444
No 122
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=22.91 E-value=69 Score=23.59 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.2
Q ss_pred hHHHHhhcC--CCcchhhHHHHHHHhhh
Q 047491 82 NIIKFLQEL--PESQRADAVSSMVYEAS 107 (206)
Q Consensus 82 NI~k~Lq~l--p~~~R~dAv~SLvYEA~ 107 (206)
.|.++|+.+ |.+.|...+..++.||.
T Consensus 24 ~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 24 KIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 788999988 78899999999999985
No 123
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.88 E-value=2.6e+02 Score=24.72 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.|..|+.++..++..+.++++++.|++..
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR 67 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKR 67 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999888543
No 124
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.85 E-value=3.3e+02 Score=23.35 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred hHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 97 DAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 97 dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+++++=+-++--.+.||+-.-==.|..++..|..++..|+.+.+.-...
T Consensus 9 ~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~ 57 (219)
T TIGR02977 9 DIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKEL 57 (219)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666777776655666666666767666666665544333
No 125
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.57 E-value=1.9e+02 Score=21.87 Aligned_cols=25 Identities=8% Similarity=0.357 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 122 CQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 122 ~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
..|..++..++.++.....++..++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 126
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.41 E-value=2.1e+02 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
-|..|+.++..|+.+|..++.+|...+
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777776553
No 127
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.41 E-value=1.6e+02 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
|..+++++..++++.+..+.|+..++
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555444
No 128
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.37 E-value=1e+02 Score=30.68 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVV 143 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~ 143 (206)
-.|..||.||+.||.|...+|.+|+
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777766666654
No 129
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.36 E-value=1.4e+02 Score=18.06 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKA 138 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~a 138 (206)
|..|+.+|.+|+.+|..-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888887654
No 130
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.13 E-value=3.6e+02 Score=20.75 Aligned_cols=35 Identities=37% Similarity=0.416 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+..|++++..++..+...+.++..++-|...+.+
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888777766555544
No 131
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.06 E-value=1.4e+02 Score=22.61 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=41.3
Q ss_pred HHHHhhhccccCCCCccHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 101 SMVYEASARIRDPVYGCAG-----------AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 101 SLvYEA~aR~rDPVyGC~G-----------~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
++.+.|.....|.|+=-+| .+..|++++..++.++...+.++..++-|...+...
T Consensus 58 ~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 58 GLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred ceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556777777777 788899999999988888888888877776665553
No 132
>PRK11637 AmiB activator; Provisional
Probab=22.04 E-value=2.4e+02 Score=26.36 Aligned_cols=6 Identities=33% Similarity=1.027 Sum_probs=2.8
Q ss_pred Cccchh
Q 047491 67 EPAKFT 72 (206)
Q Consensus 67 ~~~~F~ 72 (206)
+|.+|.
T Consensus 14 ~~~~~~ 19 (428)
T PRK11637 14 KPRRFA 19 (428)
T ss_pred cchhhh
Confidence 344553
No 133
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=22.03 E-value=86 Score=28.27 Aligned_cols=44 Identities=27% Similarity=0.250 Sum_probs=27.4
Q ss_pred hhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 105 EASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 105 EA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
||+++|++=|-----....|-+.|-..++-|+.++++|..++.|
T Consensus 27 eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 27 EAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445666667767777788888888777666
No 134
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.96 E-value=1.7e+02 Score=20.98 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.+-.|+++|+..+.++..++.++...
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888988888888888887653
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.85 E-value=1.8e+02 Score=24.70 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=5.3
Q ss_pred ChHhHHhhhCC
Q 047491 43 CAACKILRRRC 53 (206)
Q Consensus 43 CAACK~lRRrC 53 (206)
|..|-..++++
T Consensus 2 C~iC~~~~~~~ 12 (302)
T PF10186_consen 2 CPICHNSRRRF 12 (302)
T ss_pred CCCCCCCCCCe
Confidence 55555444433
No 136
>PRK00587 hypothetical protein; Provisional
Probab=21.84 E-value=1.4e+02 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+..|.+|.+.+|.++..+|++|.+.
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~ 27 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEK 27 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888999999999999999874
No 137
>PRK14149 heat shock protein GrpE; Provisional
Probab=21.81 E-value=3.2e+02 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQC 147 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~ 147 (206)
..|..|+.++.+++..+.++++++.|++.
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rK 71 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999988843
No 138
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.72 E-value=2.8e+02 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=18.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Q 047491 114 VYGCAGAICQLQKQVSELQAQLAKA 138 (206)
Q Consensus 114 VyGC~G~I~~Lq~qi~~lqaeLa~a 138 (206)
|-|-.|.++...++|..|+++....
T Consensus 13 vl~L~~~l~~qs~~i~~L~a~n~~q 37 (110)
T PF10828_consen 13 VLGLGGWLWYQSQRIDRLRAENKAQ 37 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888876543
No 139
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=21.60 E-value=48 Score=26.12 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=29.6
Q ss_pred ChHhHHhhhCCC-CCCccccCCCCCCccchhhhhhhhchhhHHHHhhc
Q 047491 43 CAACKILRRRCA-DKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQE 89 (206)
Q Consensus 43 CAACK~lRRrC~-~~CilAPYFP~~~~~~F~~vhkvFG~sNI~k~Lq~ 89 (206)
+-.+.-+|+.++ .-..+.||||..++.|= .-...+.+.-+.+||+.
T Consensus 68 ll~i~a~r~~~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 68 LLLIDALRRAGAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSA 114 (116)
T ss_dssp HHHHHHHHHTTBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHHh
Confidence 334455666665 44778899999887664 55677777788888764
No 140
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=21.46 E-value=3.5e+02 Score=24.82 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=42.0
Q ss_pred hhhhhchh--hHHHHhhcCCCc-chhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 047491 74 AHRVFGAS--NIIKFLQELPES-QRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKA----QAEVVNMQ 146 (206)
Q Consensus 74 vhkvFG~s--NI~k~Lq~lp~~-~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~a----q~eL~~~q 146 (206)
+.++|-.. -+.+||+-+++. +|+.+|+.|--+-+.|. ..|.+||.++...+.-|+.+ +.+|+.++
T Consensus 48 il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~ 119 (272)
T KOG4552|consen 48 ILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTTACFQANQKLKSIK 119 (272)
T ss_pred HHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 455666666654 68899998855555554 35999999998887777654 44554443
No 141
>PRK04325 hypothetical protein; Provisional
Probab=21.42 E-value=2e+02 Score=21.20 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047491 130 ELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 130 ~lqaeLa~aq~eL~~~q~q 148 (206)
.|-..+..-+.+|..++.|
T Consensus 27 ~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 27 GLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334333333
No 142
>PRK00736 hypothetical protein; Provisional
Probab=21.38 E-value=1.9e+02 Score=20.91 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 047491 139 QAEVVNMQ 146 (206)
Q Consensus 139 q~eL~~~q 146 (206)
+.+|..++
T Consensus 32 q~~i~~L~ 39 (68)
T PRK00736 32 WKTVEQMR 39 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 143
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.37 E-value=3.7e+02 Score=21.12 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
-.|..|..++..+...+...+.+|...+-|.+.+...
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888877777776665555443
No 144
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=21.08 E-value=1.8e+02 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 126 KQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 126 ~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
.||+.+|+|....+++++..+.|+
T Consensus 5 ~eLe~iQ~et~LleAq~~~akaq~ 28 (119)
T TIGR03021 5 GQLEALQSETALLEAQLARAKAQN 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888877777776655543
No 145
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=21.01 E-value=95 Score=30.58 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=20.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 115 YGCAGAICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 115 yGC~G~I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
-||---| -||++|++|+.||+..|.-.
T Consensus 415 qGCpRC~-~LQkEIedLreQLaamqsl~ 441 (445)
T PF15483_consen 415 QGCPRCL-VLQKEIEDLREQLAAMQSLA 441 (445)
T ss_pred CCCcccH-HHHHHHHHHHHHHHHHHHHH
Confidence 4555444 58999999999998887644
No 146
>PRK14147 heat shock protein GrpE; Provisional
Probab=20.85 E-value=3.2e+02 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
-|-.|+.++..++..+.++++++.|++-.
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR 54 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKR 54 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999888443
No 147
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.82 E-value=1.6e+02 Score=21.92 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 126 KQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 126 ~qi~~lqaeLa~aq~eL~~~q 146 (206)
.++..|+++|..++.++..++
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~ 90 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQ 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444443
No 148
>PHA02629 A-type inclusion body protein; Provisional
Probab=20.80 E-value=2.2e+02 Score=20.73 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 112 DPVYGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 112 DPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
+-=.||...--.-.+.|..|++||.+-...+..
T Consensus 19 ~~gngc~s~c~ferk~iavleaelr~~metik~ 51 (61)
T PHA02629 19 NGGNGCTSSCEFERKIIAVLEAELRKSMETIKA 51 (61)
T ss_pred CCCCCccchhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344678887777778899999999998888865
No 149
>PRK14624 hypothetical protein; Provisional
Probab=20.74 E-value=1.4e+02 Score=24.00 Aligned_cols=27 Identities=0% Similarity=0.271 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+-+..|.+|.+.+|+++..+|++|.+.
T Consensus 6 ~nm~~~mkqAq~mQ~km~~~QeeL~~~ 32 (115)
T PRK14624 6 KNMSEALSNMGNIREKMEEVKKRIASI 32 (115)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 336778889999999999999999874
No 150
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.70 E-value=2.2e+02 Score=24.72 Aligned_cols=28 Identities=4% Similarity=0.318 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
-+.-|..++++|.+++.||..++.++..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 151
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.60 E-value=3.2e+02 Score=23.73 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALLY 157 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~~ 157 (206)
+.+|+.++...+.+++.++.++..++.-...+..++.
T Consensus 72 ~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 152
>PRK03762 hypothetical protein; Provisional
Probab=20.40 E-value=1.5e+02 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+..+.++.+.+|.++..+|++|.+.
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~ 31 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANK 31 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888888888888888763
No 153
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.38 E-value=1.8e+02 Score=23.00 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
++.|..||+.||++|..+..+.++
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaE 27 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAE 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.35 E-value=3e+02 Score=23.75 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.-|..|+++|..++.+|..++.|...++
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999988886663
No 155
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.29 E-value=3.8e+02 Score=22.23 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=28.4
Q ss_pred hchhhHHHHhhcCC-CcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 78 FGASNIIKFLQELP-ESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 78 FG~sNI~k~Lq~lp-~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
|-.-.+.+.|+... +.....++-.++-++-.-..+-++.-+..-..++++...+++.++.++.++..
T Consensus 2 FDT~~~v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~ 69 (177)
T PF07798_consen 2 FDTHKFVKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQN 69 (177)
T ss_pred CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555565422 22333333333333322222333333333444555555555555555555543
No 156
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.20 E-value=1.5e+02 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 128 VSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 128 i~~lqaeLa~aq~eL~~~q~q 148 (206)
...|+.||..+|.||..+|.+
T Consensus 27 q~~l~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQE 47 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666665544
No 157
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.20 E-value=2.1e+02 Score=29.22 Aligned_cols=66 Identities=18% Similarity=0.374 Sum_probs=51.7
Q ss_pred hhhhchhhHHHHhhc-------------CCCc--chhhHHHHHHHhhhccc------cCCCCccHHHHHHHHHHHHHHHH
Q 047491 75 HRVFGASNIIKFLQE-------------LPES--QRADAVSSMVYEASARI------RDPVYGCAGAICQLQKQVSELQA 133 (206)
Q Consensus 75 hkvFG~sNI~k~Lq~-------------lp~~--~R~dAv~SLvYEA~aR~------rDPVyGC~G~I~~Lq~qi~~lqa 133 (206)
|==|--|++.++||. +.|+ ..++..++|.|++.++- +++|-.-.-++..+|+++..|++
T Consensus 280 hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~ 359 (675)
T KOG0242|consen 280 HIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEA 359 (675)
T ss_pred CCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHH
Confidence 444556777777775 2223 57899999999998874 78889999999999999999999
Q ss_pred HHHHHHH
Q 047491 134 QLAKAQA 140 (206)
Q Consensus 134 eLa~aq~ 140 (206)
++...+.
T Consensus 360 e~~~~~~ 366 (675)
T KOG0242|consen 360 ELERLKK 366 (675)
T ss_pred HHHhhcc
Confidence 9987443
No 158
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=20.08 E-value=2.4e+02 Score=26.46 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=35.3
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 112 DPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 112 DPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
.|-+|-+.-|..|+.-+..|+..|..++..+..+...+..|-..
T Consensus 317 ~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~d 360 (384)
T PF03148_consen 317 PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEED 360 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577789999999999999999999999888876666555443
No 159
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.00 E-value=3.3e+02 Score=23.28 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQC 147 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~ 147 (206)
.|..|+.++.+++..+.++++++.|++.
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988843
Done!