Query 047491
Match_columns 206
No_of_seqs 142 out of 320
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xdj_A Uncharacterized protein 85.7 2.1 7.3E-05 31.5 6.2 45 120-164 21-68 (83)
2 4dzn_A Coiled-coil peptide CC- 83.7 1.8 6.2E-05 27.1 4.2 28 119-146 2-29 (33)
3 2er8_A Regulatory protein Leu3 74.7 4.5 0.00015 27.1 4.4 21 119-139 49-69 (72)
4 1nkp_B MAX protein, MYC proto- 69.0 7.6 0.00026 27.5 4.7 32 118-149 46-77 (83)
5 4e61_A Protein BIM1; EB1-like 65.4 14 0.00049 28.5 5.9 34 116-149 1-34 (106)
6 2wt7_A Proto-oncogene protein 63.4 23 0.00078 24.1 6.1 37 120-156 24-60 (63)
7 2ke4_A CDC42-interacting prote 59.2 25 0.00087 26.3 6.2 41 103-144 47-87 (98)
8 1am9_A Srebp-1A, protein (ster 55.7 19 0.00066 25.6 4.8 27 118-144 49-75 (82)
9 3ra3_B P2F; coiled coil domain 55.1 15 0.0005 22.2 3.4 25 121-145 2-26 (28)
10 2l5g_B Putative uncharacterize 53.3 40 0.0014 22.3 5.6 32 123-154 6-37 (42)
11 4dzn_A Coiled-coil peptide CC- 52.9 27 0.00092 21.7 4.4 27 127-153 3-29 (33)
12 2xdj_A Uncharacterized protein 52.2 40 0.0014 24.6 6.1 38 118-155 26-63 (83)
13 1t2k_D Cyclic-AMP-dependent tr 50.8 53 0.0018 21.9 6.4 36 120-155 23-58 (61)
14 1zme_C Proline utilization tra 50.2 17 0.0006 23.9 3.6 26 118-143 43-68 (70)
15 3uun_A Dystrophin; triple heli 49.9 55 0.0019 22.6 6.4 45 110-154 27-71 (119)
16 3uul_A Utrophin; spectrin repe 49.4 63 0.0021 22.4 7.0 52 103-154 18-71 (118)
17 1gk6_A Vimentin; intermediate 47.9 48 0.0016 22.4 5.6 24 122-145 3-26 (59)
18 1uuj_A Platelet-activating fac 47.5 7.9 0.00027 29.0 1.6 24 121-144 60-83 (88)
19 1x4w_A Hypothetical protein FL 47.2 6.7 0.00023 28.1 1.2 20 28-47 3-22 (67)
20 1ci6_A Transcription factor AT 47.1 65 0.0022 21.9 6.3 36 121-156 25-60 (63)
21 1nlw_A MAD protein, MAX dimeri 44.6 41 0.0014 24.0 5.1 31 118-148 46-76 (80)
22 3r4h_A Coiled coil helix CC-TE 44.1 36 0.0012 21.2 4.0 27 119-145 2-28 (34)
23 3ol1_A Vimentin; structural ge 43.6 52 0.0018 25.0 5.8 31 119-149 20-50 (119)
24 2xv5_A Lamin-A/C; structural p 43.3 65 0.0022 23.0 5.9 26 120-145 6-31 (74)
25 1gk4_A Vimentin; intermediate 42.8 65 0.0022 22.9 5.9 26 120-145 27-52 (84)
26 1x8y_A Lamin A/C; structural p 42.4 66 0.0022 23.1 5.9 26 120-145 29-54 (86)
27 3m91_A Proteasome-associated A 41.5 68 0.0023 21.6 5.5 32 121-152 18-49 (51)
28 2zvf_A Alanyl-tRNA synthetase; 41.2 91 0.0031 23.8 7.0 46 101-146 14-59 (171)
29 1hlo_A Protein (transcription 40.6 26 0.00088 24.6 3.4 24 118-141 56-79 (80)
30 3mud_A DNA repair protein XRCC 40.4 68 0.0023 26.6 6.4 46 92-148 119-164 (175)
31 2dgc_A Protein (GCN4); basic d 40.2 46 0.0016 22.8 4.6 28 119-146 30-57 (63)
32 2z5i_A TM, general control pro 39.2 66 0.0022 21.5 5.1 27 120-146 13-39 (52)
33 2w6a_A ARF GTPase-activating p 38.9 73 0.0025 22.6 5.5 33 120-152 28-60 (63)
34 1rtm_1 Mannose-binding protein 38.5 33 0.0011 25.2 4.0 22 124-145 2-23 (149)
35 1dh3_A Transcription factor CR 38.2 56 0.0019 21.8 4.6 27 120-146 23-49 (55)
36 2yy0_A C-MYC-binding protein; 37.2 63 0.0022 21.6 4.8 25 121-145 21-45 (53)
37 1jnm_A Proto-oncogene C-JUN; B 37.1 51 0.0017 22.2 4.4 34 119-152 22-55 (62)
38 1r73_A TM1492, 50S ribosomal p 36.3 42 0.0014 23.2 3.9 22 129-150 12-33 (66)
39 3q0x_A Centriole protein; cent 36.0 73 0.0025 27.3 6.1 35 120-154 179-213 (228)
40 1gd2_E Transcription factor PA 35.6 85 0.0029 22.2 5.5 34 119-152 29-62 (70)
41 3twe_A Alpha4H; unknown functi 35.2 47 0.0016 19.8 3.4 21 122-142 4-24 (27)
42 3j21_W 50S ribosomal protein L 35.1 44 0.0015 23.6 3.9 23 128-150 11-33 (72)
43 4emc_A Monopolin complex subun 34.7 69 0.0024 27.0 5.6 17 126-142 41-57 (190)
44 3v2d_2 50S ribosomal protein L 34.2 47 0.0016 23.5 3.9 23 128-150 18-40 (72)
45 1vq8_V 50S ribosomal protein L 33.4 49 0.0017 23.3 3.9 22 129-150 15-36 (71)
46 3nmd_A CGMP dependent protein 33.4 50 0.0017 23.9 4.0 25 118-142 18-42 (72)
47 3tnu_A Keratin, type I cytoske 33.2 98 0.0034 23.5 5.9 25 120-144 78-102 (131)
48 3mov_A Lamin-B1; LMNB1, B-type 33.2 1.1E+02 0.0037 22.6 5.9 40 98-144 23-62 (95)
49 3tnu_B Keratin, type II cytosk 33.2 99 0.0034 23.4 5.9 25 120-144 76-100 (129)
50 3r8s_Y 50S ribosomal protein L 33.1 41 0.0014 23.1 3.4 23 128-150 11-33 (63)
51 1ic2_A Tropomyosin alpha chain 33.0 62 0.0021 22.8 4.5 27 119-145 41-67 (81)
52 3f31_A Spectrin alpha chain, b 32.7 80 0.0027 23.7 5.3 55 100-154 59-113 (149)
53 1nkp_A C-MYC, MYC proto-oncoge 32.1 1.1E+02 0.0038 22.0 5.8 31 118-148 51-81 (88)
54 3t97_C Nuclear pore glycoprote 32.1 1.2E+02 0.0042 21.1 5.8 37 120-156 13-49 (64)
55 2k48_A Nucleoprotein; viral pr 31.9 84 0.0029 24.4 5.3 29 118-146 34-62 (107)
56 3swk_A Vimentin; cytoskeleton, 31.7 72 0.0025 23.1 4.7 28 121-148 2-29 (86)
57 3pbf_A Pulmonary surfactant-as 31.4 35 0.0012 24.8 3.0 24 120-143 3-26 (148)
58 3edu_A Beta-I spectrin, spectr 29.9 50 0.0017 25.8 3.9 51 103-153 124-174 (218)
59 2lw1_A ABC transporter ATP-bin 29.6 93 0.0032 22.1 5.0 23 123-145 19-41 (89)
60 2wg5_A General control protein 29.5 62 0.0021 24.2 4.1 26 121-146 9-34 (109)
61 2zjr_V 50S ribosomal protein L 29.4 51 0.0017 22.9 3.4 21 129-149 12-32 (67)
62 2jee_A YIIU; FTSZ, septum, coi 29.2 1.6E+02 0.0053 21.7 6.1 23 118-140 19-41 (81)
63 3i00_A HIP-I, huntingtin-inter 29.0 1.1E+02 0.0038 23.6 5.6 23 119-141 40-62 (120)
64 3myf_A Sensor protein; HPT, hi 28.9 1.1E+02 0.0036 22.7 5.3 58 72-137 54-111 (119)
65 3u1c_A Tropomyosin alpha-1 cha 28.7 76 0.0026 23.4 4.5 28 118-145 43-70 (101)
66 3w03_C DNA repair protein XRCC 28.7 83 0.0028 26.2 5.1 29 116-144 149-177 (184)
67 3s4r_A Vimentin; alpha-helix, 27.5 1.5E+02 0.005 21.7 5.8 26 120-145 57-82 (93)
68 1t2k_D Cyclic-AMP-dependent tr 27.0 1.4E+02 0.0046 19.9 5.1 28 119-146 29-56 (61)
69 3bbp_D GRIP and coiled-coil do 26.8 94 0.0032 22.5 4.4 56 73-139 7-63 (71)
70 3l4f_A RHO guanine nucleotide 26.7 1.7E+02 0.0058 20.6 6.7 40 118-157 6-45 (61)
71 2yy0_A C-MYC-binding protein; 26.5 1.1E+02 0.0038 20.4 4.6 28 126-153 19-46 (53)
72 3edv_A Spectrin beta chain, br 26.2 2.6E+02 0.0088 22.7 7.7 50 105-154 131-180 (323)
73 3rrk_A V-type ATPase 116 kDa s 26.2 2.2E+02 0.0074 24.2 7.5 30 119-148 226-255 (357)
74 3kqg_A Langerin, C-type lectin 25.6 1.1E+02 0.0037 23.0 5.0 26 118-143 15-40 (182)
75 1buu_A Protein (mannose-bindin 25.3 57 0.002 24.7 3.4 22 119-140 23-44 (168)
76 2zxx_A Geminin; coiled-coil, c 25.2 1.4E+02 0.0048 21.8 5.2 22 121-142 36-57 (79)
77 1ybx_A Conserved hypothetical 25.2 56 0.0019 26.1 3.4 27 119-145 41-67 (143)
78 3lbx_A Spectrin alpha chain, e 25.2 86 0.0029 24.0 4.4 52 100-151 69-120 (161)
79 1fxk_C Protein (prefoldin); ar 24.6 1.9E+02 0.0064 21.4 6.1 32 121-152 3-34 (133)
80 2ic6_A Nucleocapsid protein; h 24.6 1E+02 0.0035 22.6 4.4 29 118-146 4-32 (78)
81 3v86_A De novo design helix; c 24.4 1.2E+02 0.0041 18.1 3.9 24 121-144 2-25 (27)
82 1u5p_A Spectrin alpha chain, b 23.9 2.4E+02 0.0083 21.5 6.9 44 111-154 134-177 (216)
83 3azd_A Short alpha-tropomyosin 23.8 37 0.0013 21.3 1.6 27 120-146 5-31 (37)
84 2ic9_A Nucleocapsid protein; h 23.7 1.2E+02 0.0041 23.0 4.8 27 119-145 5-31 (96)
85 2ic6_A Nucleocapsid protein; h 23.7 92 0.0031 22.9 4.0 22 119-140 52-73 (78)
86 3tnu_B Keratin, type II cytosk 23.5 1.5E+02 0.0052 22.3 5.5 26 117-142 34-59 (129)
87 3q8t_A Beclin-1; autophagy, AT 23.2 2.2E+02 0.0074 20.9 6.1 35 118-152 3-37 (96)
88 2wt7_B Transcription factor MA 23.1 1.3E+02 0.0045 22.4 4.8 44 97-145 31-74 (90)
89 2k48_A Nucleoprotein; viral pr 23.0 89 0.0031 24.2 4.0 15 78-92 32-46 (107)
90 1fxk_C Protein (prefoldin); ar 22.9 2.3E+02 0.0078 20.9 6.3 35 120-154 89-123 (133)
91 2zkr_v 60S ribosomal protein L 22.7 86 0.0029 24.5 3.9 21 123-143 16-36 (123)
92 1x64_A Alpha-actinin-2 associa 22.7 66 0.0023 22.0 3.0 11 38-48 23-33 (89)
93 1zxa_A CGMP-dependent protein 22.6 1.1E+02 0.0038 21.7 4.1 23 127-149 26-48 (67)
94 3i00_A HIP-I, huntingtin-inter 22.6 1.3E+02 0.0045 23.2 5.0 18 121-138 17-34 (120)
95 3iz5_c 60S ribosomal protein L 22.1 89 0.0031 24.5 3.9 20 129-148 17-36 (124)
96 4emc_A Monopolin complex subun 22.1 2.1E+02 0.0071 24.1 6.4 16 121-136 43-58 (190)
97 2w6b_A RHO guanine nucleotide 22.1 2E+02 0.0069 19.9 6.6 35 118-152 9-43 (56)
98 3o0z_A RHO-associated protein 22.0 2.1E+02 0.0071 23.5 6.3 28 120-147 91-118 (168)
99 4a17_U RPL35, 60S ribosomal pr 21.7 92 0.0032 24.4 3.9 20 129-148 16-35 (124)
100 1fzc_C Fibrin; blood coagulati 21.6 88 0.003 27.8 4.2 32 122-153 14-45 (319)
101 4fi5_A Nucleoprotein; structur 21.4 1.4E+02 0.0047 23.4 4.8 25 121-145 24-48 (113)
102 3e98_A GAF domain of unknown f 21.3 1.4E+02 0.0049 25.1 5.3 55 82-145 35-91 (252)
103 1hjb_A Ccaat/enhancer binding 20.9 2.3E+02 0.0079 20.7 5.7 34 123-156 40-73 (87)
104 1lwu_C Fibrinogen gamma chain; 20.5 1.8E+02 0.006 25.9 6.0 24 125-148 25-48 (323)
105 1a93_B MAX protein, coiled coi 20.2 1.4E+02 0.0049 18.8 3.8 22 121-142 9-30 (34)
No 1
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.75 E-value=2.1 Score=31.48 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCCC
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA---LLYKEMGKSP 164 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~---~~~~~~~~~~ 164 (206)
....|++||+.++.|++.++.++...+.+-..+.. -+|.|+|..-
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998888888777666555555 5677776544
No 2
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.66 E-value=1.8 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
|.|..|+++|..|+.|++.++-|++.++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998888887654
No 3
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=74.71 E-value=4.5 Score=27.14 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQ 139 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq 139 (206)
+.|..|+.+|..|+..|..++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888887776544
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.99 E-value=7.6 Score=27.48 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
+-.|..|+.++..++.++..++.+...++.|-
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999988888877665443
No 5
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=65.45 E-value=14 Score=28.52 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 116 GCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 116 GC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
|..|.+..|+.++...++++..++.++..++.+.
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999888888776664
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.43 E-value=23 Score=24.13 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALL 156 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~ 156 (206)
.|..|+.++..|+.+-..++.++..++.+.+.|-.++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888877777766654
No 7
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.24 E-value=25 Score=26.33 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 103 VYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 103 vYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
+|+.+--.-||-.= .+-|...-.+|+.|+++|.+.+.-|+.
T Consensus 47 vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 47 VYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78877666666443 556666666666666666666555544
No 8
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.72 E-value=19 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
+-.|..|+.++..|+.++..++.++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999998888887754
No 9
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.07 E-value=15 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|..|+++..+|+.|++.+.-|++.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888888888888887777653
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.34 E-value=40 Score=22.25 Aligned_cols=32 Identities=9% Similarity=0.302 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.|-++|..+-.|+++++.+|..+|-....|-+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999888766655544
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.85 E-value=27 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 127 QVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 127 qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
+|..|+.|++.++.|++.++...+.|-
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888777666553
No 12
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.20 E-value=40 Score=24.60 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
..-|..|+.+|..|+.++.....+|..++.++.++-..
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998887776665543
No 13
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.76 E-value=53 Score=21.94 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 155 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~ 155 (206)
.+..|+.++..|..+...++.++..++.+-+.|-..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777776666555544
No 14
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=50.25 E-value=17 Score=23.88 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVV 143 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~ 143 (206)
-+.|..|+.+|..|+.+|..++..|.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999998888877653
No 15
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=49.91 E-value=55 Score=22.60 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.5
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 110 IRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 110 ~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
..+||.+-...|..+..+...++.+|..-+..+..+......|+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999998888777666656554
No 16
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.45 E-value=63 Score=22.41 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=39.9
Q ss_pred HHhhhcc--ccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 103 VYEASAR--IRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 103 vYEA~aR--~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
+-|++.+ ..+||.+-...|..+.++...++.+|..-+..+..+......|+.
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 458999999999999999999999999988888776655555543
No 17
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=47.93 E-value=48 Score=22.39 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 122 CQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 122 ~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
..+|.+|..++++|..+++++..+
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q 26 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARL 26 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777543
No 18
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=47.45 E-value=7.9 Score=29.01 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
|-.||++|.+|+++++.+++||..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778999999999999999998864
No 19
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.18 E-value=6.7 Score=28.10 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCcCCCChHhH
Q 047491 28 ISANSSAPPPVIMSPCAACK 47 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~CAACK 47 (206)
||+|+..++......|..||
T Consensus 3 ~~sp~~~~~~~~~~rC~~C~ 22 (67)
T 1x4w_A 3 SGSSGSRSKQKSRRRCFQCQ 22 (67)
T ss_dssp CCCCSCCCSCSCTTBCSSSC
T ss_pred CCCCCCccCCccCCcchhhC
Confidence 34444555666678999998
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.08 E-value=65 Score=21.93 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALL 156 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~ 156 (206)
+..|+.++..|+.+-..++.++..++..-+.|-.++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777776666666666665555554443
No 21
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.60 E-value=41 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
+..|..|+.+...++.+...++.+...++.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888877777666555433
No 22
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=44.13 E-value=36 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.468 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|.+..+++++...+.||+..+-||+.+
T Consensus 2 gelaaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777666654
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=43.63 E-value=52 Score=24.97 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
+.|..|++||..+..+-+++..++.+++...
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999988888888888888876553
No 24
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=43.29 E-value=65 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
....++.+|..++++|..+++++..+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776543
No 25
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.84 E-value=65 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.+..++..|..++++|..++.++..+
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777543
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.42 E-value=66 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.+..++.+|..++++|+.++.++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888887777553
No 27
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.47 E-value=68 Score=21.58 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
+..|..+...|-+-|..++.||..++.|-+.|
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666788888888888877665443
No 28
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.16 E-value=91 Score=23.82 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 101 SMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 101 SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.++.+......-+..--...|..|+.++..++.++..++.+++..+
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444456777888899999999999999888887643
No 29
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.64 E-value=26 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAE 141 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~e 141 (206)
+-.|..|+.++..|+.++..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556788888888887777666543
No 30
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=40.40 E-value=68 Score=26.64 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=36.6
Q ss_pred CcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 92 ESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 92 ~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
.+.|.++++-|+=. |...|..||.+++.|+.+|...+.+...++..
T Consensus 119 a~~paE~ireli~~-----------AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 119 VENPAEVIRELICY-----------CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp CSCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888877755 45778999999999999999998888776544
No 31
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.24 E-value=46 Score=22.84 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
..+..|+.++..|+.+...++.++..++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888887777777776654
No 32
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=39.24 E-value=66 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.|.+||+.|.+|+.+|...+.+...++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 578899999999999988877776654
No 33
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=38.89 E-value=73 Score=22.58 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
.|.+|.+-.+.+..||...|.+|..+|.-..+|
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 477888888888888888888887766544443
No 34
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=38.53 E-value=33 Score=25.21 Aligned_cols=22 Identities=5% Similarity=0.277 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 124 LQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 124 Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|+++|..|+.++..++.+|..+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l 23 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELT 23 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554433
No 35
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.15 E-value=56 Score=21.84 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.|..|+.++..|+.|...++.++..++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777776543
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.16 E-value=63 Score=21.63 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+-.|+.++..|++++..++.++..+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443
No 37
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.12 E-value=51 Score=22.16 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
..|..|+.++..|+.+-..++.++..++.+-+.|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788887777777777777666554444
No 38
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=36.28 E-value=42 Score=23.24 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~a 150 (206)
++|+.+|..++.||.+++.|++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~a 33 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLA 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666653
No 39
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.98 E-value=73 Score=27.26 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
-...|++++++.++|....+++|+..+.|.|.+-+
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666565554
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.64 E-value=85 Score=22.20 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
..|..|+.+|..|+.....+.++...++.|-..|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888777777666666665554444
No 41
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=35.21 E-value=47 Score=19.82 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 122 CQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 122 ~~Lq~qi~~lqaeLa~aq~eL 142 (206)
-.|.++++.||..|.+.+.+|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 457788888988888887766
No 42
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.12 E-value=44 Score=23.62 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 128 VSELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 128 i~~lqaeLa~aq~eL~~~q~q~a 150 (206)
.++|+.+|..++.||.+++.|++
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~a 33 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLT 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666653
No 43
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.66 E-value=69 Score=27.03 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047491 126 KQVSELQAQLAKAQAEV 142 (206)
Q Consensus 126 ~qi~~lqaeLa~aq~eL 142 (206)
.+|..|+.+|+.++++.
T Consensus 41 ~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 41 TEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33444444444444444
No 44
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=34.21 E-value=47 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 128 VSELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 128 i~~lqaeLa~aq~eL~~~q~q~a 150 (206)
.++|+.+|..++.||.+++.|++
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~a 40 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQAS 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777753
No 45
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=33.37 E-value=49 Score=23.26 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~a 150 (206)
++|+.+|..++.||.+++.|++
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~a 36 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQA 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 46
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.37 E-value=50 Score=23.90 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
.|.|..||..+.....||..-...|
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I 42 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALI 42 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555554443333
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.20 E-value=98 Score=23.50 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
.+..++..|..++++|..++.++..
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777776654
No 48
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.18 E-value=1.1e+02 Score=22.64 Aligned_cols=40 Identities=8% Similarity=0.118 Sum_probs=22.2
Q ss_pred HHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 98 AVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 98 Av~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
....-+-|.+.|.. -.+..+|..|..++++|..++.++..
T Consensus 23 ~LE~~l~e~E~~~~-------~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 23 ACLERIQELEDLLA-------KEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555432 23455666666666666666666654
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.16 E-value=99 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
.+..++.+|..++++|..++.++..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566666777777777777766654
No 50
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=33.10 E-value=41 Score=23.10 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 128 VSELQAQLAKAQAEVVNMQCQQA 150 (206)
Q Consensus 128 i~~lqaeLa~aq~eL~~~q~q~a 150 (206)
.++|+.+|..++.||.+++.|++
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~a 33 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAA 33 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777776654
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.04 E-value=62 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.-|..|+++|..++.+|..++..|...
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888888888887654
No 52
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=32.72 E-value=80 Score=23.71 Aligned_cols=55 Identities=9% Similarity=0.121 Sum_probs=41.3
Q ss_pred HHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 100 SSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 100 ~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+-+.|...-..|+.||-+..|..+.++.+.+++||...+..+..+......|+.
T Consensus 59 ~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~ 113 (149)
T 3f31_A 59 EKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMIS 113 (149)
T ss_dssp HHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666778899998889999999999999998888777666555555544
No 53
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.13 E-value=1.1e+02 Score=21.96 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
+-.|..|+.+...++.++...+.+...++.+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888887777776665555444433
No 54
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.05 E-value=1.2e+02 Score=21.06 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALL 156 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~ 156 (206)
.|..|..++..++.+=.++..+|..+..|+..|-.++
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999998888888888889999999998888865
No 55
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.92 E-value=84 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.+-|..||.+|...+.||..|+.+|....
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999998887643
No 56
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.74 E-value=72 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
|..|++||..+..+-+.+..|+-+++..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~ 29 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAED 29 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5678888888888888888888777654
No 57
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=31.36 E-value=35 Score=24.81 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVV 143 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~ 143 (206)
++..|++++..|+.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888887773
No 58
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=29.86 E-value=50 Score=25.84 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=27.0
Q ss_pred HHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 103 VYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 103 vYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
+-|.+.-+.+|+.+-...|..|+++...++.+|...+.++..++.....|+
T Consensus 124 l~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~ 174 (218)
T 3edu_A 124 IDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQ 174 (218)
T ss_dssp HHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556888888889999999999999999998888877654444443
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.56 E-value=93 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
++|+++..|..+|+.+.+++..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 60
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.46 E-value=62 Score=24.15 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
..+|+.+++.++.++..++.||..++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888888888888888887654
No 61
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=29.42 E-value=51 Score=22.89 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q~ 149 (206)
++|+.+|..++.||.+++.|+
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~ 32 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQA 32 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 62
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.20 E-value=1.6e+02 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQA 140 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~ 140 (206)
+-.|..||.+|+.|+.+...+..
T Consensus 19 vdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777666655433
No 63
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.02 E-value=1.1e+02 Score=23.57 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAE 141 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~e 141 (206)
-+|..|+.+|..|++||+..+.+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888777643
No 64
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=28.91 E-value=1.1e+02 Score=22.73 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=32.9
Q ss_pred hhhhhhhchhhHHHHhhcCCCcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHH
Q 047491 72 TIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAK 137 (206)
Q Consensus 72 ~~vhkvFG~sNI~k~Lq~lp~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~ 137 (206)
..+||+-|++..+..-+ -..-+...|..+|..+|+-..-..+..|..+|..+..++..
T Consensus 54 ~~aHkLkGaa~~~Ga~~--------L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~ 111 (119)
T 3myf_A 54 STIHKLHGASCYCGVPT--------TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQ 111 (119)
T ss_dssp HHHHHHHHHHTTTTCHH--------HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHH--------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888775543210 11122345666777777766666666666666665554443
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.73 E-value=76 Score=23.38 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
=.-|..|+++|..++.+|..++..|...
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888777654
No 66
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.66 E-value=83 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 116 GCAGAICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 116 GC~G~I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
.|++.|..|+.++..|+.+..+++.|...
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666665555555555543
No 67
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.49 E-value=1.5e+02 Score=21.68 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.|..|+++|..+..+-+.+..++.++
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555543
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.95 E-value=1.4e+02 Score=19.87 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
+-+..|..+...|+.++...+.|+..++
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776554
No 69
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.77 E-value=94 Score=22.53 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=27.8
Q ss_pred hhhhhhchhhHHHHhhcCC-CcchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 047491 73 IAHRVFGASNIIKFLQELP-ESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQ 139 (206)
Q Consensus 73 ~vhkvFG~sNI~k~Lq~lp-~~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq 139 (206)
.+|.+|--.+.-.+.+.|. ..++.+-+++|+.|+++- ...|..|+..|+.||.+..
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777775 447789999999998752 3348888989988887763
No 70
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=26.68 E-value=1.7e+02 Score=20.59 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALLY 157 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~~ 157 (206)
+-.+..|..+++.|+++....+.-+...|.++..|-.+++
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999888888877777666666654
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.47 E-value=1.1e+02 Score=20.37 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 126 KQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 126 ~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
..++.|+.|++.+|.++..++.+.+.+-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555443
No 72
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=26.25 E-value=2.6e+02 Score=22.69 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=37.8
Q ss_pred hhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 105 EASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 105 EA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
|....+.+|+.+-+..|..++++...++.+|...+..+..+......|+.
T Consensus 131 ~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~ 180 (323)
T 3edv_A 131 DKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180 (323)
T ss_dssp HHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444458888889999999999999999998888877666555555443
No 73
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.23 E-value=2.2e+02 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
-.|..|+.+|+.++.+|..++.+|..+..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999998888888776544
No 74
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.59 E-value=1.1e+02 Score=23.01 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVV 143 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~ 143 (206)
...+..|+.+|+.|+.+|...+..|.
T Consensus 15 ~~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 15 LEKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777666553
No 75
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.30 E-value=57 Score=24.69 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQA 140 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~ 140 (206)
..|..|+.+|..|+.+|...+.
T Consensus 23 ~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 23 VKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555666666666655544
No 76
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.21 E-value=1.4e+02 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
-.+|..+|..++.+++..+.+.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN 57 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKEN 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888887763
No 77
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=25.20 E-value=56 Score=26.12 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|-+..+.+|.+++|+++.++|+||.+.
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~ 67 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEK 67 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 358889999999999999999999874
No 78
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=25.16 E-value=86 Score=24.03 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 100 SSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 151 (206)
Q Consensus 100 ~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~ 151 (206)
..-+.|...-+.|+.||-...|..|.++-+.+++||...+..+..+......
T Consensus 69 ~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~ 120 (161)
T 3lbx_A 69 GKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE 120 (161)
T ss_dssp HHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666778888999999999999999999999888777665443333
No 79
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.63 E-value=1.9e+02 Score=21.40 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
+.+|+.+++.++.++...+.++..++.+...+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~ 34 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555554333
No 80
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.60 E-value=1e+02 Score=22.63 Aligned_cols=29 Identities=7% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.+-|..||.+|...+.+|..++.+|....
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999998886643
No 81
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.41 E-value=1.2e+02 Score=18.05 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVN 144 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~ 144 (206)
+.+|+.++-+|+.|...++.|...
T Consensus 2 vyqlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhc
Confidence 467888888888888887777654
No 82
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=23.93 E-value=2.4e+02 Score=21.45 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=33.9
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 111 RDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 111 rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
..++.+.+..|..|.++.+.++++|...+..+..+......|+.
T Consensus 134 ~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~ 177 (216)
T 1u5p_A 134 SEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177 (216)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 35667789999999999999999998888877666555555543
No 83
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.79 E-value=37 Score=21.31 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQ 146 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q 146 (206)
.|..|+.+|..++.++..++.++...+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888877777776543
No 84
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.73 E-value=1.2e+02 Score=23.03 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
+-|..||.+|...+.+|..|+.+|...
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA 31 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDA 31 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888887777544
No 85
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.65 E-value=92 Score=22.86 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 119 GAICQLQKQVSELQAQLAKAQA 140 (206)
Q Consensus 119 G~I~~Lq~qi~~lqaeLa~aq~ 140 (206)
+.|..||.+|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666655443
No 86
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.53 E-value=1.5e+02 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.363 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 117 CAGAICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 117 C~G~I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
+---|..|.++|+.|+.||...+...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33345666666666666665554433
No 87
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.23 E-value=2.2e+02 Score=20.85 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
+.-+-.|+..|..++.+=+.+..+|..+..+.+.+
T Consensus 3 ~~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l 37 (96)
T 3q8t_A 3 GSDSEQLQRELKELALEEERLIQELEDVEKNRKVV 37 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33445555555555555555555555554444333
No 88
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=23.09 E-value=1.3e+02 Score=22.36 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=24.4
Q ss_pred hHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 97 DAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 97 dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
-...-=.|-+++|.+= +-.+..|+.++..|+.|+...+.|+..+
T Consensus 31 RtlKNRgyAq~CR~Kr-----~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 31 RTLKNRGYAQSCRYKR-----VQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445558888888752 3444555555555555555555554443
No 89
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.96 E-value=89 Score=24.23 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=9.2
Q ss_pred hchhhHHHHhhcCCC
Q 047491 78 FGASNIIKFLQELPE 92 (206)
Q Consensus 78 FG~sNI~k~Lq~lp~ 92 (206)
|-.++|-++-.++..
T Consensus 32 ~tM~~ieeLQ~Ei~~ 46 (107)
T 2k48_A 32 FTMSTLQELQENITA 46 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 456677666666543
No 90
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.90 E-value=2.3e+02 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVA 154 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~ 154 (206)
.+..|+++++.++..+...+.++..++.|...+..
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777777776666554444
No 91
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.70 E-value=86 Score=24.51 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVV 143 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~ 143 (206)
.|+.+|.+++.||-.++-+.+
T Consensus 16 EL~~~L~eLK~ELf~LRfq~a 36 (123)
T 2zkr_v 16 ELLKQLDDLKVELSQLRVAKV 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444333
No 92
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.67 E-value=66 Score=22.03 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=7.5
Q ss_pred CcCCCChHhHH
Q 047491 38 VIMSPCAACKI 48 (206)
Q Consensus 38 ~~~~~CAACK~ 48 (206)
.....|+.|+.
T Consensus 23 ~~~~~C~~C~~ 33 (89)
T 1x64_A 23 QRMPLCDKCGS 33 (89)
T ss_dssp CSCCBCTTTCC
T ss_pred CcCCCcccCCC
Confidence 34567998874
No 93
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.61 E-value=1.1e+02 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047491 127 QVSELQAQLAKAQAEVVNMQCQQ 149 (206)
Q Consensus 127 qi~~lqaeLa~aq~eL~~~q~q~ 149 (206)
.|.+|+.+|....++|..++.|.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444443
No 94
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.59 E-value=1.3e+02 Score=23.15 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKA 138 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~a 138 (206)
|-+|+.+|+.|+.+|...
T Consensus 17 Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 17 IERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 95
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=22.14 E-value=89 Score=24.48 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q 148 (206)
++|..+|..++.||.+++.|
T Consensus 17 eEL~~~L~eLK~ELf~LRfq 36 (124)
T 3iz5_c 17 DDLTKQLAELKTELGQLRIQ 36 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 96
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.09 E-value=2.1e+02 Score=24.12 Aligned_cols=16 Identities=56% Similarity=0.657 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLA 136 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa 136 (206)
|..|+.||+.++++..
T Consensus 43 i~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 43 IKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3334444444444333
No 97
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.07 E-value=2e+02 Score=19.91 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 118 AGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 152 (206)
Q Consensus 118 ~G~I~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~ 152 (206)
|-.|..|.-|++.|+.|....+.-|..-|.-+..|
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~L 43 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999998888777776544444333
No 98
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.01 E-value=2.1e+02 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 120 AICQLQKQVSELQAQLAKAQAEVVNMQC 147 (206)
Q Consensus 120 ~I~~Lq~qi~~lqaeLa~aq~eL~~~q~ 147 (206)
+|..|+.+|..|+.||...+..+.....
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444433
No 99
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=21.71 E-value=92 Score=24.39 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047491 129 SELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 129 ~~lqaeLa~aq~eL~~~q~q 148 (206)
++|..+|..++.||.+++.|
T Consensus 16 eEL~~~L~eLK~ELf~LRfq 35 (124)
T 4a17_U 16 EQLVGELGKLQTELSQLRIA 35 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 100
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.63 E-value=88 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 122 CQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 153 (206)
Q Consensus 122 ~~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~ 153 (206)
..++.+|..|+..|...+++|..++.+...|.
T Consensus 14 l~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 14 LTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444443
No 101
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.38 E-value=1.4e+02 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
|..||.+|...+.||..|+.+|...
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA 48 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDA 48 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998888888654
No 102
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.33 E-value=1.4e+02 Score=25.09 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=17.7
Q ss_pred hHHHHhhcCCC--cchhhHHHHHHHhhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 82 NIIKFLQELPE--SQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNM 145 (206)
Q Consensus 82 NI~k~Lq~lp~--~~R~dAv~SLvYEA~aR~rDPVyGC~G~I~~Lq~qi~~lqaeLa~aq~eL~~~ 145 (206)
.|...|++=|. .++++.+..| ++-.|.. |+|+-.++|++.+++++...+.+|..+
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPEL------RIPHQPG---DAVSLVERQVRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhC------CCCCCCC---CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555553 3455665544 5666763 677777777777777777777666443
No 103
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.85 E-value=2.3e+02 Score=20.69 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 123 QLQKQVSELQAQLAKAQAEVVNMQCQQANLVALL 156 (206)
Q Consensus 123 ~Lq~qi~~lqaeLa~aq~eL~~~q~q~a~~~~~~ 156 (206)
.++.++..|+.|-..++.++..++.+-..|-.++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666665555545555544
No 104
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.46 E-value=1.8e+02 Score=25.92 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047491 125 QKQVSELQAQLAKAQAEVVNMQCQ 148 (206)
Q Consensus 125 q~qi~~lqaeLa~aq~eL~~~q~q 148 (206)
..+|..|+..|...+.+|..++.+
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 105
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.19 E-value=1.4e+02 Score=18.77 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047491 121 ICQLQKQVSELQAQLAKAQAEV 142 (206)
Q Consensus 121 I~~Lq~qi~~lqaeLa~aq~eL 142 (206)
+...|+.|++|+.+-+.++.++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 4455666666666655555554
Done!