BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047492
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%)
Query: 327 FDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386
FD+F M ++ P+ T ++A ++ K FG+ P Y +
Sbjct: 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149
Query: 387 LCGDGSTHEAYEV 399
C G +AYEV
Sbjct: 150 FCRKGDADKAYEV 162
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 410 PGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYD 451
PG + LS A+ + R + + D++I A+E++IK + VTYD
Sbjct: 363 PGSEILS--AEMMLRHLGWTEAADVIISAMEKSIKQKRVTYD 402
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSID 405
L + G + VA EL++ G+ P V + L+NS G G T E ++ + + +
Sbjct: 326 LSGYITEGQIVVARELHRK----GIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMY 381
Query: 406 HGLFPGKKTLSILA----DALC-RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460
G G+ ++A +AL RD KF + DL DKF+
Sbjct: 382 AGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF--------------EDKFVRQGWNE 427
Query: 461 NK-----VEVGYLIHSELSRMNKVASENTYIQLIH 490
N+ +E+G+ I + L +N YIQ H
Sbjct: 428 NRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 462
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSID 405
L + G + VA EL++ G+ P V + L+NS G G T E ++ + + +
Sbjct: 317 LSGYITEGQIVVARELHRK----GIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMY 372
Query: 406 HGLFPGKKTLSILA----DALC-RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460
G G+ ++A +AL RD KF + DL DKF+
Sbjct: 373 AGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF--------------EDKFVRQGRNE 418
Query: 461 NK-----VEVGYLIHSELSRMNKVASENTYIQLIH 490
N+ +E+G+ I + L +N YIQ H
Sbjct: 419 NRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 453
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSID 405
L + G + VA EL++ G+ P V + L+NS G G T E ++ + + +
Sbjct: 317 LSGYITEGQIVVARELHRK----GIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMY 372
Query: 406 HGLFPGKKTLSILA----DALC-RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460
G G+ ++A +AL RD KF + DL DKF+
Sbjct: 373 AGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF--------------EDKFVRQGRNE 418
Query: 461 NK-----VEVGYLIHSELSRMNKVASENTYIQLIH 490
N+ +E+G+ I + L +N YIQ H
Sbjct: 419 NRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 453
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSID 405
L + G + VA EL++ G+ P V + L+NS G G T E ++ + + +
Sbjct: 317 LSGYITEGQIVVARELHRK----GIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMY 372
Query: 406 HGLFPGKKTLSILA----DALC-RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460
G G+ ++A +AL RD KF + DL DKF+
Sbjct: 373 AGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF--------------EDKFVRQGRNE 418
Query: 461 NK-----VEVGYLIHSELSRMNKVASENTYIQLIH 490
N+ +E+G+ I + L +N YIQ H
Sbjct: 419 NRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 453
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSID 405
L + G + VA EL++ G+ P V + L+NS G G T E ++ + + +
Sbjct: 326 LSGYITEGQIVVARELHRK----GIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMY 381
Query: 406 HGLFPGKKTLSILA----DALC-RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460
G G+ ++A +AL RD KF + DL DKF+
Sbjct: 382 AGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF--------------EDKFVRQGRNE 427
Query: 461 NK-----VEVGYLIHSELSRMNKVASENTYIQLIH 490
N+ +E+G+ I + L +N YIQ H
Sbjct: 428 NRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 462
>pdb|1ON2|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr),
D8m Mutant, Bound To Manganese
pdb|1ON2|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr),
D8m Mutant, Bound To Manganese
Length = 142
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIR 698
PSME Y E I +L K Y V + L H VT + +D Y + +
Sbjct: 4 PSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL-------DKDEYLIYEK 56
Query: 699 LRGMLINEQSK 709
RG+++ + K
Sbjct: 57 YRGLVLTSKGK 67
>pdb|4HV6|A Chain A, Structure Of Mntr H77a Mutant In Apo- And Mn-Bound Forms
pdb|4HV6|B Chain B, Structure Of Mntr H77a Mutant In Apo- And Mn-Bound Forms
Length = 141
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIR 698
PSME Y E I +L K Y V + L H VT + +D Y + +
Sbjct: 3 PSMEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL-------DKDEYLIYEK 55
Query: 699 LRGMLINEQSK---------ISLLGQ---LIGVFSGCIKVSQDIEGLQ 734
RG+++ + K LL Q +IGV K+ D+EG++
Sbjct: 56 YRGLVLTSKGKKIGKRLVYRAELLEQFLRIIGVDEE--KIYNDVEGIE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,020,280
Number of Sequences: 62578
Number of extensions: 936646
Number of successful extensions: 2563
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2552
Number of HSP's gapped (non-prelim): 27
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)