Query 047492
Match_columns 806
No_of_seqs 756 out of 4092
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 11:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-82 2.3E-87 728.5 68.8 679 55-780 46-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.8E-79 3.9E-84 702.0 71.3 666 93-805 48-717 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.1E-69 6.7E-74 601.5 65.2 546 94-677 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-68 2.6E-73 596.8 66.9 537 233-806 368-907 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.5E-63 7.7E-68 553.7 46.7 475 95-586 86-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1E-61 2.2E-66 542.0 51.9 512 163-780 84-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-38 4E-43 375.4 85.3 693 72-806 171-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.9E-37 1.5E-41 362.0 83.5 712 71-806 136-864 (899)
9 PRK11447 cellulose synthase su 100.0 2.8E-26 6E-31 269.7 71.6 653 97-804 29-736 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-24 2.8E-29 255.6 68.7 621 95-777 61-745 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 4.6E-21 1E-25 214.4 67.8 631 107-802 55-734 (987)
12 PRK09782 bacteriophage N4 rece 99.9 4.6E-19 1E-23 198.5 66.8 655 72-794 56-759 (987)
13 KOG2002 TPR-containing nuclear 99.9 2.2E-17 4.9E-22 172.1 58.6 642 97-803 42-740 (1018)
14 KOG2002 TPR-containing nuclear 99.9 3.3E-16 7.2E-21 163.5 60.1 569 76-683 146-758 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 7.8E-19 1.7E-23 173.1 37.8 432 136-640 53-488 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.5E-18 3.2E-23 171.3 37.5 446 169-684 51-499 (966)
17 PRK11788 tetratricopeptide rep 99.9 1.1E-18 2.4E-23 183.5 34.9 302 209-518 44-354 (389)
18 PRK11788 tetratricopeptide rep 99.9 1.9E-18 4.2E-23 181.7 34.1 296 179-481 48-352 (389)
19 KOG2076 RNA polymerase III tra 99.8 1.1E-14 2.4E-19 151.4 59.1 645 109-804 152-891 (895)
20 TIGR00990 3a0801s09 mitochondr 99.8 3.1E-16 6.7E-21 173.5 51.2 434 134-635 130-571 (615)
21 PRK10049 pgaA outer membrane p 99.8 8.7E-17 1.9E-21 181.0 47.1 424 85-522 4-465 (765)
22 KOG4422 Uncharacterized conser 99.8 1.1E-15 2.5E-20 144.5 43.1 362 270-673 206-593 (625)
23 TIGR00990 3a0801s09 mitochondr 99.8 7.2E-16 1.6E-20 170.6 49.5 257 425-739 307-571 (615)
24 PRK15174 Vi polysaccharide exp 99.8 4.8E-16 1E-20 171.0 45.2 335 134-479 45-384 (656)
25 KOG4422 Uncharacterized conser 99.8 3.9E-15 8.5E-20 140.9 43.4 455 129-637 114-592 (625)
26 PRK10049 pgaA outer membrane p 99.8 9.6E-16 2.1E-20 172.6 46.7 417 312-789 20-470 (765)
27 PRK15174 Vi polysaccharide exp 99.8 9.5E-16 2.1E-20 168.7 45.6 332 99-442 45-382 (656)
28 PRK14574 hmsH outer membrane p 99.8 1E-14 2.2E-19 160.4 50.6 444 95-588 33-518 (822)
29 KOG2003 TPR repeat-containing 99.8 4.5E-15 9.7E-20 141.4 35.8 485 275-803 205-717 (840)
30 PRK14574 hmsH outer membrane p 99.8 4.5E-14 9.8E-19 155.4 49.2 434 72-519 46-519 (822)
31 KOG2076 RNA polymerase III tra 99.8 2.4E-12 5.1E-17 134.4 57.1 636 70-769 149-891 (895)
32 KOG4318 Bicoid mRNA stability 99.8 2.3E-14 4.9E-19 148.0 40.2 586 118-767 12-655 (1088)
33 KOG0495 HAT repeat protein [RN 99.7 1.6E-10 3.4E-15 116.2 60.8 608 111-773 266-880 (913)
34 KOG4318 Bicoid mRNA stability 99.7 3.2E-14 6.9E-19 147.0 35.7 253 152-426 11-285 (1088)
35 KOG0495 HAT repeat protein [RN 99.7 3.1E-09 6.7E-14 107.2 61.7 618 75-751 266-891 (913)
36 KOG2003 TPR repeat-containing 99.6 4.1E-12 8.8E-17 121.5 34.1 483 130-656 200-709 (840)
37 KOG0547 Translocase of outer m 99.5 7.8E-11 1.7E-15 114.4 34.2 217 562-804 336-562 (606)
38 KOG1915 Cell cycle control pro 99.5 1.7E-08 3.6E-13 98.1 49.6 432 235-704 73-535 (677)
39 KOG1915 Cell cycle control pro 99.5 6.1E-09 1.3E-13 101.0 45.6 431 179-675 86-541 (677)
40 KOG1173 Anaphase-promoting com 99.5 4.7E-10 1E-14 111.3 36.8 280 481-789 243-532 (611)
41 PF13429 TPR_15: Tetratricopep 99.5 1.7E-13 3.6E-18 135.9 13.0 260 487-805 13-274 (280)
42 PRK10747 putative protoheme IX 99.5 5.2E-11 1.1E-15 123.6 31.6 281 109-438 97-387 (398)
43 KOG1126 DNA-binding cell divis 99.5 8.9E-12 1.9E-16 126.1 24.4 287 462-779 334-626 (638)
44 TIGR00540 hemY_coli hemY prote 99.5 4.8E-11 1E-15 124.7 30.5 133 639-771 261-397 (409)
45 KOG0547 Translocase of outer m 99.5 2E-10 4.4E-15 111.6 31.3 416 138-634 122-565 (606)
46 PF13429 TPR_15: Tetratricopep 99.5 1.8E-13 3.9E-18 135.7 11.0 261 136-404 13-275 (280)
47 PRK10747 putative protoheme IX 99.5 1.9E-10 4.1E-15 119.4 33.7 284 179-472 97-386 (398)
48 TIGR00540 hemY_coli hemY prote 99.5 1.8E-10 4E-15 120.3 33.3 288 319-634 96-398 (409)
49 KOG2047 mRNA splicing factor [ 99.5 1E-07 2.2E-12 96.4 50.2 527 104-660 110-713 (835)
50 KOG1155 Anaphase-promoting com 99.4 1.1E-08 2.3E-13 99.3 40.4 330 163-510 161-494 (559)
51 KOG1155 Anaphase-promoting com 99.4 7.2E-09 1.6E-13 100.5 38.6 366 126-510 159-535 (559)
52 COG3071 HemY Uncharacterized e 99.4 3.2E-10 7E-15 108.0 28.3 207 553-778 188-395 (400)
53 KOG0985 Vesicle coat protein c 99.4 9.5E-07 2E-11 93.9 55.0 668 88-802 352-1189(1666)
54 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.3E-14 101.1 28.9 289 179-511 48-347 (389)
55 KOG0985 Vesicle coat protein c 99.4 1.1E-06 2.3E-11 93.6 58.0 646 73-762 407-1184(1666)
56 KOG1173 Anaphase-promoting com 99.4 1.8E-08 3.9E-13 100.4 39.1 281 410-755 242-532 (611)
57 KOG2047 mRNA splicing factor [ 99.4 6.3E-07 1.4E-11 90.8 58.2 573 167-803 103-718 (835)
58 COG3071 HemY Uncharacterized e 99.4 4.4E-09 9.6E-14 100.4 32.3 194 320-516 97-297 (400)
59 COG2956 Predicted N-acetylgluc 99.4 1.8E-09 3.9E-14 99.6 28.3 288 143-441 47-347 (389)
60 KOG1156 N-terminal acetyltrans 99.4 2E-07 4.4E-12 94.7 45.1 118 283-404 53-170 (700)
61 KOG3785 Uncharacterized conser 99.4 4.4E-08 9.6E-13 91.5 37.2 426 243-750 65-499 (557)
62 KOG1126 DNA-binding cell divis 99.4 2E-10 4.4E-15 116.5 23.9 287 392-743 334-624 (638)
63 KOG1156 N-terminal acetyltrans 99.3 1.4E-07 3.1E-12 95.7 42.5 464 109-634 20-510 (700)
64 KOG3617 WD40 and TPR repeat-co 99.3 1.4E-07 3.1E-12 97.8 42.1 374 140-577 737-1170(1416)
65 KOG2376 Signal recognition par 99.3 7E-08 1.5E-12 96.8 38.7 160 609-771 342-518 (652)
66 KOG4162 Predicted calmodulin-b 99.3 7.6E-07 1.7E-11 92.5 42.7 94 679-773 687-783 (799)
67 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.2E-16 84.2 6.1 49 743-791 1-50 (50)
68 KOG3785 Uncharacterized conser 99.2 1.2E-06 2.6E-11 82.2 38.9 457 103-644 29-497 (557)
69 PF12569 NARP1: NMDA receptor- 99.2 6.4E-07 1.4E-11 93.9 39.9 294 101-405 9-333 (517)
70 PRK12370 invasion protein regu 99.2 5.6E-09 1.2E-13 113.6 25.4 198 550-774 336-536 (553)
71 TIGR02521 type_IV_pilW type IV 99.2 6.8E-09 1.5E-13 100.6 23.5 93 169-262 34-126 (234)
72 KOG3616 Selective LIM binding 99.2 1.1E-05 2.5E-10 83.0 47.3 266 91-401 643-932 (1636)
73 PF12569 NARP1: NMDA receptor- 99.2 8.6E-07 1.9E-11 92.9 39.6 298 280-634 13-333 (517)
74 KOG2376 Signal recognition par 99.1 4.2E-06 9E-11 84.5 40.5 147 656-804 356-516 (652)
75 TIGR02521 type_IV_pilW type IV 99.1 7.9E-09 1.7E-13 100.2 22.0 194 608-805 33-229 (234)
76 KOG3617 WD40 and TPR repeat-co 99.1 7.2E-06 1.6E-10 85.6 42.5 261 199-510 725-995 (1416)
77 KOG4162 Predicted calmodulin-b 99.1 9.8E-06 2.1E-10 84.6 43.7 206 303-510 319-541 (799)
78 KOG3616 Selective LIM binding 99.1 7.2E-06 1.6E-10 84.4 41.8 197 103-330 713-931 (1636)
79 KOG1129 TPR repeat-containing 99.1 9.2E-09 2E-13 95.0 19.2 236 376-670 222-458 (478)
80 PRK12370 invasion protein regu 99.1 4.8E-08 1E-12 106.4 27.9 182 182-369 277-468 (553)
81 KOG1174 Anaphase-promoting com 99.1 5.9E-06 1.3E-10 79.5 37.5 288 424-773 208-500 (564)
82 KOG1129 TPR repeat-containing 99.1 3.4E-08 7.4E-13 91.3 20.4 229 239-475 227-457 (478)
83 KOG4340 Uncharacterized conser 99.1 4.4E-07 9.4E-12 83.0 27.0 352 132-508 11-372 (459)
84 KOG1840 Kinesin light chain [C 99.0 8.4E-08 1.8E-12 99.0 24.5 251 448-771 200-477 (508)
85 KOG1127 TPR repeat-containing 99.0 1.8E-05 3.9E-10 84.8 41.1 575 182-802 474-1098(1238)
86 KOG1840 Kinesin light chain [C 99.0 1.7E-07 3.6E-12 96.8 25.6 176 449-668 285-477 (508)
87 KOG1127 TPR repeat-containing 99.0 4.1E-05 8.9E-10 82.2 43.2 318 394-738 800-1137(1238)
88 cd05804 StaR_like StaR_like; a 98.9 6.9E-06 1.5E-10 85.2 33.3 307 131-440 6-335 (355)
89 KOG1174 Anaphase-promoting com 98.9 8.9E-05 1.9E-09 71.7 39.8 268 340-634 230-499 (564)
90 PRK11189 lipoprotein NlpI; Pro 98.9 7.5E-07 1.6E-11 88.5 24.1 217 146-372 41-266 (296)
91 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-06 3.4E-11 86.2 25.5 162 551-739 97-265 (296)
92 COG3063 PilF Tfp pilus assembl 98.9 1.5E-06 3.2E-11 77.1 21.8 86 176-262 45-130 (250)
93 KOG0548 Molecular co-chaperone 98.8 9.7E-06 2.1E-10 81.2 29.0 104 140-245 11-114 (539)
94 PRK04841 transcriptional regul 98.8 0.00064 1.4E-08 80.5 47.9 341 244-635 383-760 (903)
95 COG3063 PilF Tfp pilus assembl 98.8 7.8E-06 1.7E-10 72.7 23.3 200 202-406 37-236 (250)
96 KOG4340 Uncharacterized conser 98.7 1.3E-05 2.8E-10 73.7 24.7 202 304-515 7-211 (459)
97 KOG0624 dsRNA-activated protei 98.7 0.0002 4.4E-09 67.5 32.8 331 270-672 37-372 (504)
98 PF12854 PPR_1: PPR repeat 98.7 1.3E-08 2.8E-13 62.0 3.8 33 773-805 1-33 (34)
99 cd05804 StaR_like StaR_like; a 98.7 6.3E-05 1.4E-09 78.0 33.8 205 418-634 120-335 (355)
100 PF04733 Coatomer_E: Coatomer 98.7 1.1E-06 2.4E-11 85.7 18.2 248 245-510 11-264 (290)
101 KOG0548 Molecular co-chaperone 98.6 0.00018 3.9E-09 72.4 31.4 377 104-510 10-454 (539)
102 PF04733 Coatomer_E: Coatomer 98.6 2.7E-06 5.9E-11 83.0 18.7 125 310-439 134-263 (290)
103 KOG1125 TPR repeat-containing 98.6 9.6E-06 2.1E-10 81.9 22.5 258 457-800 295-563 (579)
104 KOG1914 mRNA cleavage and poly 98.6 0.00094 2E-08 67.3 38.9 150 622-773 347-501 (656)
105 KOG0624 dsRNA-activated protei 98.6 0.00022 4.8E-09 67.2 29.2 327 130-510 37-369 (504)
106 KOG1914 mRNA cleavage and poly 98.6 0.0011 2.4E-08 66.8 41.0 212 428-658 309-527 (656)
107 PRK04841 transcriptional regul 98.6 0.00021 4.5E-09 84.6 36.6 337 141-477 384-761 (903)
108 PF12854 PPR_1: PPR repeat 98.6 9.1E-08 2E-12 58.3 3.9 32 372-403 2-33 (34)
109 KOG1128 Uncharacterized conser 98.5 3.4E-06 7.3E-11 87.4 16.6 216 551-805 397-613 (777)
110 KOG2053 Mitochondrial inherita 98.5 0.0031 6.8E-08 67.8 48.9 163 520-703 439-606 (932)
111 KOG2053 Mitochondrial inherita 98.5 0.0033 7.2E-08 67.6 52.2 107 142-253 20-128 (932)
112 KOG1125 TPR repeat-containing 98.5 3.8E-05 8.2E-10 77.8 21.3 251 353-662 296-563 (579)
113 KOG1128 Uncharacterized conser 98.4 3.7E-05 8.1E-10 79.9 21.3 212 135-369 402-614 (777)
114 TIGR03302 OM_YfiO outer membra 98.4 2.2E-05 4.8E-10 75.7 18.6 178 608-805 35-229 (235)
115 KOG1070 rRNA processing protei 98.4 6.4E-05 1.4E-09 83.6 22.4 230 545-794 1451-1686(1710)
116 TIGR03302 OM_YfiO outer membra 98.3 4E-05 8.6E-10 74.0 17.8 146 640-805 32-192 (235)
117 PLN02789 farnesyltranstransfer 98.3 0.00024 5.2E-09 70.5 23.2 213 555-791 40-267 (320)
118 COG5010 TadD Flp pilus assembl 98.3 7.7E-05 1.7E-09 68.1 17.8 155 645-802 70-225 (257)
119 KOG1070 rRNA processing protei 98.2 0.00078 1.7E-08 75.5 26.9 204 272-479 1459-1666(1710)
120 PRK14720 transcript cleavage f 98.2 0.00054 1.2E-08 76.0 24.1 168 95-299 30-197 (906)
121 PRK14720 transcript cleavage f 98.2 0.00078 1.7E-08 74.8 25.2 238 199-493 30-268 (906)
122 PLN02789 farnesyltranstransfer 98.2 0.0024 5.2E-08 63.5 26.4 202 346-580 41-249 (320)
123 PRK10370 formate-dependent nit 98.1 0.0006 1.3E-08 62.8 20.7 119 390-511 52-173 (198)
124 KOG3081 Vesicle coat complex C 98.1 0.0011 2.4E-08 60.7 21.0 249 243-510 16-270 (299)
125 PRK15179 Vi polysaccharide bio 98.1 0.00024 5.3E-09 78.0 20.3 133 128-263 83-216 (694)
126 PRK15179 Vi polysaccharide bio 98.1 0.00023 4.9E-09 78.2 19.7 164 90-263 80-244 (694)
127 COG5010 TadD Flp pilus assembl 98.1 0.00053 1.2E-08 62.8 18.5 155 136-294 71-225 (257)
128 COG4783 Putative Zn-dependent 98.1 0.0014 3E-08 65.7 22.6 117 211-333 317-434 (484)
129 COG4783 Putative Zn-dependent 98.1 0.0037 8.1E-08 62.7 25.6 114 141-257 316-430 (484)
130 PRK10370 formate-dependent nit 98.1 8.6E-05 1.9E-09 68.4 13.4 119 619-739 52-173 (198)
131 KOG3081 Vesicle coat complex C 98.0 0.0028 6.2E-08 58.1 21.9 86 317-406 147-236 (299)
132 TIGR00756 PPR pentatricopeptid 98.0 8.1E-06 1.8E-10 50.9 4.2 34 746-779 1-35 (35)
133 KOG3060 Uncharacterized conser 98.0 0.002 4.4E-08 58.6 20.2 189 565-774 25-221 (289)
134 PRK15359 type III secretion sy 98.0 0.00047 1E-08 59.9 15.9 92 417-510 29-120 (144)
135 PRK15359 type III secretion sy 98.0 0.00028 6.1E-09 61.3 14.4 92 171-263 29-120 (144)
136 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 49.6 4.2 32 746-777 2-34 (34)
137 TIGR00756 PPR pentatricopeptid 97.9 1.7E-05 3.8E-10 49.3 4.5 33 608-640 2-34 (35)
138 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.5E-10 48.1 4.3 33 607-639 2-34 (34)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00069 1.5E-08 58.6 15.0 102 414-519 19-120 (135)
140 TIGR02552 LcrH_SycD type III s 97.8 0.00021 4.6E-09 61.8 11.1 117 663-783 5-122 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00083 1.8E-08 68.0 15.8 125 379-509 171-295 (395)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00051 1.1E-08 69.5 14.3 122 136-262 174-295 (395)
143 KOG3060 Uncharacterized conser 97.8 0.0046 1E-07 56.3 18.3 181 619-803 25-215 (289)
144 PF10037 MRP-S27: Mitochondria 97.7 0.00046 9.9E-09 70.1 13.1 121 410-530 64-186 (429)
145 PF09976 TPR_21: Tetratricopep 97.7 0.0012 2.5E-08 57.7 14.2 114 179-295 24-142 (145)
146 PF10037 MRP-S27: Mitochondria 97.7 0.00036 7.7E-09 70.9 11.7 120 306-425 65-186 (429)
147 PF01535 PPR: PPR repeat; Int 97.6 6.5E-05 1.4E-09 45.1 3.5 30 746-775 1-31 (31)
148 PF08579 RPM2: Mitochondrial r 97.6 0.00097 2.1E-08 52.4 10.2 68 356-423 39-115 (120)
149 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.9E-08 51.6 10.2 79 381-459 29-116 (120)
150 PF09976 TPR_21: Tetratricopep 97.5 0.0027 5.9E-08 55.4 13.7 124 132-260 13-143 (145)
151 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.5E-09 43.9 3.6 30 608-637 2-31 (31)
152 PF07079 DUF1347: Protein of u 97.5 0.12 2.7E-06 51.6 41.5 449 178-668 18-522 (549)
153 PF06239 ECSIT: Evolutionarily 97.5 0.0017 3.6E-08 58.1 11.4 50 340-389 45-99 (228)
154 PF12895 Apc3: Anaphase-promot 97.5 0.00019 4.1E-09 55.7 4.9 80 723-804 2-83 (84)
155 PF07079 DUF1347: Protein of u 97.4 0.2 4.3E-06 50.2 41.8 458 210-715 16-530 (549)
156 PF06239 ECSIT: Evolutionarily 97.3 0.0028 6.2E-08 56.7 10.7 105 304-427 44-153 (228)
157 KOG0553 TPR repeat-containing 97.3 0.014 3E-07 55.0 15.1 102 651-755 91-192 (304)
158 cd00189 TPR Tetratricopeptide 97.2 0.0029 6.2E-08 50.5 9.8 59 712-771 36-95 (100)
159 PF04840 Vps16_C: Vps16, C-ter 97.2 0.26 5.6E-06 49.0 28.0 109 343-471 178-286 (319)
160 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0079 1.7E-07 50.4 12.6 99 609-707 5-107 (119)
161 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.006 1.3E-07 51.2 11.8 95 134-230 5-106 (119)
162 cd00189 TPR Tetratricopeptide 97.2 0.0034 7.4E-08 50.0 9.8 92 135-227 4-95 (100)
163 KOG2041 WD40 repeat protein [G 97.2 0.42 9.1E-06 50.5 30.0 157 213-402 747-903 (1189)
164 KOG2041 WD40 repeat protein [G 97.2 0.43 9.3E-06 50.4 26.6 16 145-160 748-763 (1189)
165 PF14938 SNAP: Soluble NSF att 97.2 0.14 3.1E-06 50.5 22.6 20 456-475 205-224 (282)
166 PF14938 SNAP: Soluble NSF att 97.1 0.034 7.3E-07 55.0 17.6 57 207-263 121-183 (282)
167 PRK02603 photosystem I assembl 97.1 0.016 3.4E-07 52.4 13.7 91 130-220 34-126 (172)
168 KOG1538 Uncharacterized conser 97.1 0.092 2E-06 54.6 19.6 40 325-367 618-657 (1081)
169 PRK10866 outer membrane biogen 97.1 0.19 4.2E-06 48.0 21.2 174 611-804 37-237 (243)
170 PF05843 Suf: Suppressor of fo 97.0 0.0081 1.8E-07 59.0 12.1 25 134-158 4-28 (280)
171 CHL00033 ycf3 photosystem I as 97.0 0.0075 1.6E-07 54.3 10.9 95 129-223 33-136 (168)
172 PLN03088 SGT1, suppressor of 97.0 0.019 4E-07 58.7 14.9 86 423-510 13-98 (356)
173 PRK15363 pathogenicity island 97.0 0.018 4E-07 49.2 12.1 88 685-773 44-132 (157)
174 PRK10866 outer membrane biogen 97.0 0.089 1.9E-06 50.3 18.4 57 175-231 41-100 (243)
175 PF05843 Suf: Suppressor of fo 97.0 0.007 1.5E-07 59.4 11.2 129 643-773 3-136 (280)
176 PF12688 TPR_5: Tetratrico pep 97.0 0.0095 2.1E-07 49.1 10.1 89 715-803 6-99 (120)
177 PRK15363 pathogenicity island 96.9 0.012 2.6E-07 50.3 10.5 97 131-229 35-132 (157)
178 KOG1538 Uncharacterized conser 96.9 0.23 4.9E-06 51.9 21.2 34 223-259 623-656 (1081)
179 PF12895 Apc3: Anaphase-promot 96.9 0.0019 4.2E-08 50.0 5.4 20 716-735 31-50 (84)
180 PLN03088 SGT1, suppressor of 96.9 0.0079 1.7E-07 61.4 11.3 101 648-751 9-109 (356)
181 PRK02603 photosystem I assembl 96.9 0.029 6.4E-07 50.6 13.8 83 643-725 37-121 (172)
182 CHL00033 ycf3 photosystem I as 96.9 0.0081 1.8E-07 54.1 10.0 30 641-670 35-64 (168)
183 KOG0553 TPR repeat-containing 96.9 0.013 2.7E-07 55.3 11.0 101 422-526 91-191 (304)
184 PF04840 Vps16_C: Vps16, C-ter 96.9 0.58 1.2E-05 46.6 24.8 111 379-509 179-289 (319)
185 COG4700 Uncharacterized protei 96.8 0.31 6.6E-06 42.6 17.8 129 128-258 86-216 (251)
186 KOG2280 Vacuolar assembly/sort 96.7 1.1 2.4E-05 48.2 26.6 109 343-470 685-793 (829)
187 COG4700 Uncharacterized protei 96.7 0.26 5.6E-06 43.0 16.7 134 637-772 85-225 (251)
188 KOG2796 Uncharacterized conser 96.7 0.19 4.2E-06 46.4 16.6 146 379-527 179-329 (366)
189 PF12688 TPR_5: Tetratrico pep 96.7 0.045 9.7E-07 45.1 11.6 56 140-195 10-67 (120)
190 KOG2114 Vacuolar assembly/sort 96.7 1.4 3E-05 48.1 27.3 184 92-298 330-517 (933)
191 KOG1130 Predicted G-alpha GTPa 96.6 0.035 7.5E-07 54.4 12.3 132 608-739 197-344 (639)
192 KOG2796 Uncharacterized conser 96.6 0.46 9.9E-06 44.0 18.5 128 612-739 183-315 (366)
193 PF14559 TPR_19: Tetratricopep 96.6 0.0034 7.3E-08 46.2 4.3 47 724-771 5-52 (68)
194 KOG0550 Molecular chaperone (D 96.6 0.94 2E-05 45.1 22.2 131 562-703 213-348 (486)
195 PF13432 TPR_16: Tetratricopep 96.5 0.0069 1.5E-07 44.0 5.7 53 686-738 7-59 (65)
196 PRK10153 DNA-binding transcrip 96.5 0.086 1.9E-06 56.5 15.9 134 163-299 334-481 (517)
197 PF13432 TPR_16: Tetratricopep 96.5 0.011 2.4E-07 42.9 6.5 57 453-510 3-59 (65)
198 PF14559 TPR_19: Tetratricopep 96.5 0.012 2.6E-07 43.2 6.6 51 459-510 3-53 (68)
199 PRK10153 DNA-binding transcrip 96.4 0.11 2.4E-06 55.7 16.1 74 706-783 416-490 (517)
200 COG4235 Cytochrome c biogenesi 96.4 0.056 1.2E-06 51.4 11.9 115 657-773 138-256 (287)
201 COG4235 Cytochrome c biogenesi 96.3 0.17 3.7E-06 48.2 14.5 109 470-581 145-256 (287)
202 KOG2280 Vacuolar assembly/sort 96.3 2.1 4.6E-05 46.2 33.7 341 126-507 427-795 (829)
203 KOG0550 Molecular chaperone (D 96.3 1.4 3E-05 44.0 23.1 271 140-441 58-350 (486)
204 PF13281 DUF4071: Domain of un 96.2 1.2 2.7E-05 44.8 21.0 103 94-196 139-256 (374)
205 COG3898 Uncharacterized membra 96.2 1.4 3E-05 43.5 30.3 219 247-477 166-393 (531)
206 PF13414 TPR_11: TPR repeat; P 96.2 0.022 4.8E-07 42.0 6.8 63 447-510 3-66 (69)
207 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.6 3.5E-05 43.9 34.4 129 643-773 399-531 (660)
208 PF13525 YfiO: Outer membrane 96.2 0.26 5.6E-06 45.9 15.3 51 178-228 17-70 (203)
209 PF13414 TPR_11: TPR repeat; P 96.2 0.011 2.5E-07 43.5 5.0 57 169-225 6-63 (69)
210 PF13525 YfiO: Outer membrane 96.1 0.29 6.3E-06 45.5 15.4 174 609-800 8-199 (203)
211 PRK10803 tol-pal system protei 96.0 0.079 1.7E-06 51.1 11.1 93 134-228 146-245 (263)
212 PF03704 BTAD: Bacterial trans 95.9 0.042 9.2E-07 48.0 8.4 73 711-784 63-141 (146)
213 PF12921 ATP13: Mitochondrial 95.9 0.12 2.6E-06 43.2 10.2 100 551-654 1-101 (126)
214 PF12921 ATP13: Mitochondrial 95.8 0.096 2.1E-06 43.7 9.6 50 266-315 47-96 (126)
215 PF13281 DUF4071: Domain of un 95.8 2.5 5.4E-05 42.7 21.0 163 347-511 146-334 (374)
216 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.6 5.6E-05 42.6 34.3 144 482-651 397-545 (660)
217 PF13371 TPR_9: Tetratricopept 95.7 0.068 1.5E-06 39.8 7.8 61 455-518 3-63 (73)
218 KOG1130 Predicted G-alpha GTPa 95.7 0.12 2.6E-06 50.9 10.6 47 176-222 27-77 (639)
219 PF03704 BTAD: Bacterial trans 95.5 0.084 1.8E-06 46.1 8.7 70 449-519 64-138 (146)
220 KOG3941 Intermediate in Toll s 95.5 0.12 2.6E-06 48.1 9.5 71 356-426 86-172 (406)
221 PRK10803 tol-pal system protei 95.4 0.27 6E-06 47.4 12.4 103 96-200 143-251 (263)
222 PF13371 TPR_9: Tetratricopept 95.2 0.058 1.3E-06 40.2 5.8 53 176-228 5-57 (73)
223 PF10300 DUF3808: Protein of u 95.2 0.45 9.8E-06 50.6 14.2 159 645-804 192-372 (468)
224 KOG2114 Vacuolar assembly/sort 95.1 6.6 0.00014 43.3 27.5 179 203-404 337-517 (933)
225 KOG1920 IkappaB kinase complex 95.0 3.2 6.9E-05 47.5 20.1 82 611-702 944-1025(1265)
226 PF13424 TPR_12: Tetratricopep 95.0 0.045 9.7E-07 41.5 4.7 58 747-804 7-71 (78)
227 COG3118 Thioredoxin domain-con 94.9 1.2 2.6E-05 42.5 14.3 54 176-229 144-197 (304)
228 smart00299 CLH Clathrin heavy 94.9 2.3 4.9E-05 36.7 16.4 44 204-248 11-54 (140)
229 PRK15331 chaperone protein Sic 94.9 1.1 2.3E-05 39.0 12.8 88 421-510 46-133 (165)
230 smart00299 CLH Clathrin heavy 94.8 1.5 3.3E-05 37.8 14.4 109 171-296 12-121 (140)
231 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.17 3.7E-06 51.5 9.1 66 706-773 71-141 (453)
232 PRK15331 chaperone protein Sic 94.6 0.74 1.6E-05 39.9 11.4 83 689-772 50-133 (165)
233 PF04053 Coatomer_WDAD: Coatom 94.6 0.98 2.1E-05 47.3 14.6 130 237-401 297-426 (443)
234 COG3898 Uncharacterized membra 94.6 5.5 0.00012 39.6 29.9 252 248-516 133-397 (531)
235 KOG0543 FKBP-type peptidyl-pro 94.4 0.36 7.8E-06 48.0 10.1 140 611-773 213-355 (397)
236 KOG3941 Intermediate in Toll s 94.3 0.3 6.4E-06 45.7 8.7 100 305-404 65-186 (406)
237 PF13424 TPR_12: Tetratricopep 94.2 0.1 2.2E-06 39.6 4.9 28 642-669 6-33 (78)
238 KOG0403 Neoplastic transformat 94.2 7.3 0.00016 39.4 26.4 91 680-774 513-612 (645)
239 PF10300 DUF3808: Protein of u 94.1 1.9 4.1E-05 46.0 15.9 169 555-771 191-374 (468)
240 KOG4555 TPR repeat-containing 94.0 0.52 1.1E-05 38.4 8.4 92 685-776 52-147 (175)
241 KOG0543 FKBP-type peptidyl-pro 93.9 0.54 1.2E-05 46.8 10.3 94 710-806 257-353 (397)
242 PF04053 Coatomer_WDAD: Coatom 93.9 3.3 7.1E-05 43.6 16.6 132 201-367 296-427 (443)
243 PF09205 DUF1955: Domain of un 93.9 3.2 6.9E-05 34.2 13.9 63 310-373 89-151 (161)
244 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.81 1.8E-05 46.8 11.5 67 127-195 71-141 (453)
245 KOG1585 Protein required for f 93.7 4.1 8.8E-05 37.7 14.5 47 620-666 124-175 (308)
246 PF09205 DUF1955: Domain of un 93.7 3.4 7.3E-05 34.1 14.6 63 379-442 88-150 (161)
247 PF08631 SPO22: Meiosis protei 93.4 8.7 0.00019 37.8 24.1 17 352-368 256-272 (278)
248 PF07035 Mic1: Colon cancer-as 93.3 5.3 0.00012 35.1 15.6 39 221-259 15-53 (167)
249 KOG1585 Protein required for f 93.1 7.4 0.00016 36.1 15.4 25 555-579 34-58 (308)
250 PF04184 ST7: ST7 protein; In 93.1 4 8.7E-05 42.2 14.9 57 277-333 265-321 (539)
251 COG4785 NlpI Lipoprotein NlpI, 93.0 5.2 0.00011 36.3 13.7 178 565-773 78-266 (297)
252 COG1729 Uncharacterized protei 92.9 0.97 2.1E-05 42.7 9.9 87 687-773 152-244 (262)
253 PF04097 Nic96: Nup93/Nic96; 92.9 18 0.0004 40.2 24.4 90 488-581 264-356 (613)
254 COG1729 Uncharacterized protei 92.6 1.8 4E-05 40.9 11.2 105 608-713 144-252 (262)
255 PF13512 TPR_18: Tetratricopep 92.3 3.3 7.2E-05 35.1 11.2 80 98-177 12-93 (142)
256 KOG2610 Uncharacterized conser 92.2 8.3 0.00018 37.5 14.9 153 177-332 114-272 (491)
257 COG4649 Uncharacterized protei 92.1 7.6 0.00017 33.9 14.5 123 142-264 69-196 (221)
258 KOG4570 Uncharacterized conser 92.1 0.54 1.2E-05 44.8 7.0 103 91-197 59-166 (418)
259 KOG2610 Uncharacterized conser 92.0 5.1 0.00011 38.9 13.2 149 653-803 115-271 (491)
260 PF08631 SPO22: Meiosis protei 91.8 14 0.00031 36.4 24.6 227 563-803 4-270 (278)
261 COG3629 DnrI DNA-binding trans 91.7 1 2.2E-05 43.3 8.6 79 710-789 153-237 (280)
262 PF13428 TPR_14: Tetratricopep 91.5 0.36 7.8E-06 31.4 3.9 20 138-157 8-27 (44)
263 KOG4555 TPR repeat-containing 91.4 2.3 4.9E-05 34.9 8.8 88 176-263 53-143 (175)
264 COG4649 Uncharacterized protei 91.4 9.2 0.0002 33.4 14.0 131 167-299 60-195 (221)
265 COG2909 MalT ATP-dependent tra 91.3 29 0.00063 39.0 24.3 228 562-804 425-684 (894)
266 PRK11906 transcriptional regul 91.2 5.3 0.00012 41.2 13.5 145 622-769 274-432 (458)
267 PF13170 DUF4003: Protein of u 91.1 17 0.00037 36.0 20.1 22 395-416 200-221 (297)
268 PRK11906 transcriptional regul 91.1 6 0.00013 40.8 13.7 81 689-771 317-399 (458)
269 PF13512 TPR_18: Tetratricopep 90.9 7.1 0.00015 33.2 11.8 70 177-246 21-93 (142)
270 PF13428 TPR_14: Tetratricopep 90.7 0.94 2E-05 29.4 5.3 28 451-478 5-32 (44)
271 PF13170 DUF4003: Protein of u 90.6 19 0.00041 35.7 19.2 129 323-453 78-223 (297)
272 PF02259 FAT: FAT domain; Int 90.6 7.2 0.00016 40.2 14.7 60 745-804 146-209 (352)
273 PF07035 Mic1: Colon cancer-as 90.5 12 0.00025 33.1 15.2 133 363-510 15-148 (167)
274 COG3629 DnrI DNA-binding trans 90.4 3.2 6.9E-05 40.0 10.5 78 448-526 154-236 (280)
275 COG4785 NlpI Lipoprotein NlpI, 89.2 9.1 0.0002 34.8 11.5 80 189-269 88-167 (297)
276 PF13929 mRNA_stabil: mRNA sta 89.1 22 0.00049 34.3 17.0 117 215-331 143-262 (292)
277 PRK15180 Vi polysaccharide bio 88.9 1.9 4E-05 43.8 8.0 127 649-778 297-425 (831)
278 PF09613 HrpB1_HrpK: Bacterial 88.9 5.3 0.00012 34.6 9.7 52 651-703 20-71 (160)
279 COG4105 ComL DNA uptake lipopr 88.5 23 0.00049 33.6 20.6 22 315-336 79-100 (254)
280 COG4105 ComL DNA uptake lipopr 88.5 23 0.00049 33.6 21.6 56 612-668 173-231 (254)
281 PF13929 mRNA_stabil: mRNA sta 88.5 25 0.00054 34.0 18.5 116 251-366 144-262 (292)
282 PF04184 ST7: ST7 protein; In 88.4 16 0.00035 38.0 14.1 62 237-298 261-322 (539)
283 COG3118 Thioredoxin domain-con 88.2 26 0.00056 33.9 17.4 120 352-474 144-263 (304)
284 PF00637 Clathrin: Region in C 88.1 0.027 5.8E-07 49.1 -4.7 85 205-297 12-96 (143)
285 PF13176 TPR_7: Tetratricopept 88.1 0.52 1.1E-05 29.0 2.4 23 782-804 2-24 (36)
286 KOG1258 mRNA processing protei 87.7 43 0.00093 35.9 33.6 36 619-655 454-489 (577)
287 KOG1258 mRNA processing protei 87.3 45 0.00098 35.7 32.6 102 619-724 379-489 (577)
288 KOG1920 IkappaB kinase complex 87.2 67 0.0015 37.6 26.6 28 413-440 791-820 (1265)
289 PF13431 TPR_17: Tetratricopep 87.1 0.43 9.4E-06 28.9 1.6 26 704-729 7-32 (34)
290 PF13176 TPR_7: Tetratricopept 86.5 1.5 3.2E-05 26.9 3.8 25 609-633 2-26 (36)
291 KOG4570 Uncharacterized conser 86.1 17 0.00036 35.2 11.9 46 323-368 116-161 (418)
292 PF10602 RPN7: 26S proteasome 85.6 7.6 0.00017 35.0 9.5 98 554-668 38-140 (177)
293 PF10345 Cohesin_load: Cohesin 85.1 71 0.0015 35.9 40.6 195 306-510 29-253 (608)
294 PF10602 RPN7: 26S proteasome 85.0 16 0.00035 32.9 11.3 26 238-263 39-64 (177)
295 PF13431 TPR_17: Tetratricopep 84.8 0.89 1.9E-05 27.5 2.2 28 192-219 5-32 (34)
296 KOG1941 Acetylcholine receptor 84.8 44 0.00096 33.2 16.1 165 273-437 85-271 (518)
297 PF07575 Nucleopor_Nup85: Nup8 84.6 37 0.00081 37.6 16.2 74 397-472 390-463 (566)
298 COG3947 Response regulator con 84.1 42 0.0009 32.4 15.0 61 449-510 281-341 (361)
299 KOG1941 Acetylcholine receptor 84.1 48 0.001 33.0 15.0 175 450-668 86-273 (518)
300 COG0457 NrfG FOG: TPR repeat [ 83.8 39 0.00084 31.8 29.1 201 308-510 60-264 (291)
301 PF02284 COX5A: Cytochrome c o 83.1 9.3 0.0002 30.0 7.4 61 114-175 28-88 (108)
302 PF02259 FAT: FAT domain; Int 82.8 60 0.0013 33.3 23.4 53 384-440 5-57 (352)
303 PF00515 TPR_1: Tetratricopept 82.4 2.4 5.2E-05 25.4 3.5 27 608-634 3-29 (34)
304 PRK09687 putative lyase; Provi 81.9 55 0.0012 32.2 25.2 27 200-226 68-98 (280)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 81.6 10 0.00023 29.4 7.1 61 113-175 24-85 (103)
306 PF00637 Clathrin: Region in C 81.6 1 2.2E-05 39.1 2.2 79 686-771 17-97 (143)
307 COG0457 NrfG FOG: TPR repeat [ 81.5 47 0.001 31.1 29.0 204 272-477 60-266 (291)
308 PF11207 DUF2989: Protein of u 81.4 24 0.00053 32.0 10.5 71 115-186 125-198 (203)
309 PRK11619 lytic murein transgly 81.3 99 0.0021 34.7 41.3 99 81-185 84-182 (644)
310 PF00515 TPR_1: Tetratricopept 81.0 4 8.6E-05 24.4 4.1 27 484-510 3-29 (34)
311 PF09613 HrpB1_HrpK: Bacterial 80.4 39 0.00085 29.5 13.4 53 107-160 21-73 (160)
312 KOG1464 COP9 signalosome, subu 80.3 54 0.0012 31.1 20.5 58 452-510 150-219 (440)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 79.8 17 0.00036 28.3 7.6 61 147-207 23-83 (103)
314 PF02284 COX5A: Cytochrome c o 79.5 9.1 0.0002 30.0 6.2 60 149-208 28-87 (108)
315 KOG2063 Vacuolar assembly/sort 79.0 1.3E+02 0.0028 34.7 28.5 62 203-264 310-375 (877)
316 PF07719 TPR_2: Tetratricopept 78.4 3.9 8.3E-05 24.4 3.5 26 609-634 4-29 (34)
317 PF10345 Cohesin_load: Cohesin 78.3 1.2E+02 0.0027 34.0 39.9 54 563-630 372-428 (608)
318 TIGR02561 HrpB1_HrpK type III 78.2 43 0.00094 28.7 11.9 51 284-336 23-73 (153)
319 KOG0991 Replication factor C, 78.1 58 0.0013 30.3 11.8 34 633-668 186-219 (333)
320 PF07719 TPR_2: Tetratricopept 77.0 6.2 0.00014 23.4 4.1 27 484-510 3-29 (34)
321 KOG1550 Extracellular protein 76.6 1.3E+02 0.0028 33.3 20.7 117 322-442 308-427 (552)
322 PF13374 TPR_10: Tetratricopep 76.5 3.1 6.7E-05 26.3 2.8 27 712-738 4-30 (42)
323 PF07721 TPR_4: Tetratricopept 76.2 4 8.7E-05 22.8 2.8 23 782-804 4-26 (26)
324 KOG1550 Extracellular protein 76.1 1.3E+02 0.0028 33.2 25.1 152 318-476 260-426 (552)
325 PF11207 DUF2989: Protein of u 75.6 20 0.00044 32.5 8.3 71 728-798 124-197 (203)
326 KOG2034 Vacuolar sorting prote 75.2 1.5E+02 0.0033 33.6 22.8 50 609-667 507-556 (911)
327 COG3947 Response regulator con 75.1 83 0.0018 30.5 17.5 71 712-783 281-357 (361)
328 PF04097 Nic96: Nup93/Nic96; 74.1 1.6E+02 0.0034 33.1 25.0 28 483-510 325-355 (613)
329 COG4455 ImpE Protein of avirul 73.2 14 0.0003 33.8 6.6 76 643-719 3-81 (273)
330 PF13374 TPR_10: Tetratricopep 73.1 6.9 0.00015 24.6 3.8 27 608-634 4-30 (42)
331 COG1747 Uncharacterized N-term 73.0 1.3E+02 0.0028 31.7 22.2 178 165-350 65-247 (711)
332 KOG2066 Vacuolar assembly/sort 72.4 1.7E+02 0.0037 32.8 23.8 167 384-579 363-532 (846)
333 PF04910 Tcf25: Transcriptiona 72.1 1.1E+02 0.0025 31.4 14.0 159 548-707 36-224 (360)
334 KOG4648 Uncharacterized conser 72.1 7.1 0.00015 38.0 4.9 88 139-228 105-193 (536)
335 COG4455 ImpE Protein of avirul 72.1 26 0.00056 32.1 8.0 56 171-226 6-61 (273)
336 KOG1464 COP9 signalosome, subu 71.7 94 0.002 29.6 17.6 93 381-474 149-259 (440)
337 TIGR02561 HrpB1_HrpK type III 69.9 72 0.0016 27.5 13.0 52 459-512 22-74 (153)
338 PF14689 SPOB_a: Sensor_kinase 69.4 9.4 0.0002 27.1 4.0 29 777-805 21-49 (62)
339 KOG1586 Protein required for f 69.2 1E+02 0.0022 28.9 13.8 67 716-782 119-192 (288)
340 KOG0276 Vesicle coat complex C 68.6 75 0.0016 34.1 11.6 151 107-297 597-747 (794)
341 PF08424 NRDE-2: NRDE-2, neces 68.3 66 0.0014 32.5 11.3 109 696-805 51-180 (321)
342 KOG2063 Vacuolar assembly/sort 67.7 2.4E+02 0.0052 32.7 23.3 62 99-160 310-375 (877)
343 TIGR02508 type_III_yscG type I 67.5 58 0.0013 25.7 7.9 51 316-372 48-98 (115)
344 cd08819 CARD_MDA5_2 Caspase ac 67.5 35 0.00076 26.1 6.7 63 187-254 23-85 (88)
345 COG5159 RPN6 26S proteasome re 67.4 48 0.001 31.7 9.1 133 647-806 9-152 (421)
346 KOG4648 Uncharacterized conser 66.7 20 0.00043 35.1 6.7 50 648-698 104-153 (536)
347 KOG4234 TPR repeat-containing 66.1 43 0.00094 30.3 8.0 91 649-739 103-197 (271)
348 PF06552 TOM20_plant: Plant sp 65.9 25 0.00054 31.3 6.6 76 693-775 52-138 (186)
349 PF13174 TPR_6: Tetratricopept 65.8 9.9 0.00021 22.3 3.2 24 137-160 6-29 (33)
350 KOG0276 Vesicle coat complex C 65.7 77 0.0017 34.1 11.0 130 238-402 617-746 (794)
351 PF13762 MNE1: Mitochondrial s 65.3 59 0.0013 27.9 8.5 87 97-183 40-132 (145)
352 PF13762 MNE1: Mitochondrial s 65.2 90 0.002 26.8 10.7 92 333-424 28-127 (145)
353 KOG2297 Predicted translation 65.0 1.4E+02 0.0031 29.1 17.2 20 448-467 322-341 (412)
354 PF10366 Vps39_1: Vacuolar sor 64.7 73 0.0016 25.8 8.7 26 609-634 42-67 (108)
355 PHA02875 ankyrin repeat protei 63.5 2E+02 0.0044 30.3 16.4 18 278-295 72-89 (413)
356 PF10579 Rapsyn_N: Rapsyn N-te 63.3 19 0.00041 26.8 4.5 44 722-765 18-64 (80)
357 TIGR02508 type_III_yscG type I 63.1 73 0.0016 25.1 8.4 50 387-442 49-98 (115)
358 KOG2066 Vacuolar assembly/sort 63.1 2.6E+02 0.0056 31.4 27.7 52 243-297 364-418 (846)
359 PF13181 TPR_8: Tetratricopept 62.3 23 0.00049 20.9 4.3 27 484-510 3-29 (34)
360 PF13181 TPR_8: Tetratricopept 62.0 19 0.00042 21.3 4.0 26 609-634 4-29 (34)
361 COG2909 MalT ATP-dependent tra 61.2 3E+02 0.0065 31.6 28.8 229 208-437 423-684 (894)
362 KOG4234 TPR repeat-containing 60.7 60 0.0013 29.4 7.9 102 613-716 102-208 (271)
363 PF08311 Mad3_BUB1_I: Mad3/BUB 60.5 70 0.0015 26.9 8.3 85 719-804 35-124 (126)
364 PF07163 Pex26: Pex26 protein; 60.4 1E+02 0.0022 29.7 9.8 86 173-258 90-181 (309)
365 TIGR03504 FimV_Cterm FimV C-te 59.8 20 0.00043 23.3 3.7 26 611-636 4-29 (44)
366 COG2976 Uncharacterized protei 59.8 1.4E+02 0.003 27.2 13.0 87 176-264 99-188 (207)
367 PF07163 Pex26: Pex26 protein; 59.8 1.1E+02 0.0025 29.4 10.0 53 453-505 124-181 (309)
368 KOG2582 COP9 signalosome, subu 59.8 2E+02 0.0043 29.0 20.0 87 60-155 39-126 (422)
369 PF06552 TOM20_plant: Plant sp 59.4 98 0.0021 27.7 9.0 92 694-789 9-123 (186)
370 TIGR03504 FimV_Cterm FimV C-te 57.1 22 0.00048 23.1 3.6 23 488-510 5-27 (44)
371 KOG2297 Predicted translation 55.4 2.1E+02 0.0046 28.0 16.8 20 483-502 322-341 (412)
372 PHA02875 ankyrin repeat protei 55.0 2.8E+02 0.0061 29.2 16.6 75 353-435 10-88 (413)
373 PF14669 Asp_Glu_race_2: Putat 54.9 1.6E+02 0.0036 26.6 14.3 96 609-734 110-205 (233)
374 KOG0687 26S proteasome regulat 54.3 2.3E+02 0.005 28.1 14.8 64 344-407 106-174 (393)
375 PF09670 Cas_Cas02710: CRISPR- 53.5 1.6E+02 0.0035 30.5 11.3 57 613-670 138-198 (379)
376 COG2976 Uncharacterized protei 52.6 1.8E+02 0.004 26.4 14.2 88 350-442 97-189 (207)
377 KOG4507 Uncharacterized conser 52.4 61 0.0013 34.6 7.7 102 617-719 618-719 (886)
378 KOG1586 Protein required for f 51.9 2.1E+02 0.0046 26.9 21.5 23 387-409 164-186 (288)
379 KOG4642 Chaperone-dependent E3 51.6 1.7E+02 0.0037 27.6 9.5 120 650-771 19-144 (284)
380 KOG0686 COP9 signalosome, subu 51.3 2.9E+02 0.0063 28.4 13.1 173 609-787 153-352 (466)
381 COG0735 Fur Fe2+/Zn2+ uptake r 51.1 75 0.0016 27.5 7.2 46 610-655 24-69 (145)
382 KOG4077 Cytochrome c oxidase, 50.9 82 0.0018 26.1 6.6 46 115-160 68-113 (149)
383 PF11663 Toxin_YhaV: Toxin wit 50.8 19 0.00041 30.1 3.2 24 564-587 107-130 (140)
384 PF11848 DUF3368: Domain of un 50.8 60 0.0013 21.6 5.0 33 617-649 13-45 (48)
385 PRK10564 maltose regulon perip 50.7 30 0.00065 33.7 5.0 40 609-648 260-299 (303)
386 PF07575 Nucleopor_Nup85: Nup8 50.1 4E+02 0.0087 29.6 18.1 26 97-122 149-174 (566)
387 smart00028 TPR Tetratricopepti 49.6 33 0.00071 19.1 3.7 26 609-634 4-29 (34)
388 PF11848 DUF3368: Domain of un 49.3 69 0.0015 21.3 5.2 31 424-454 14-44 (48)
389 KOG4279 Serine/threonine prote 49.2 4.3E+02 0.0093 29.7 13.3 205 217-453 180-406 (1226)
390 TIGR01228 hutU urocanate hydra 48.7 1.1E+02 0.0024 32.1 8.7 21 569-589 233-253 (545)
391 KOG3807 Predicted membrane pro 48.6 2.8E+02 0.0061 27.4 11.3 49 319-369 287-338 (556)
392 KOG4077 Cytochrome c oxidase, 47.4 1.3E+02 0.0029 24.9 7.2 46 325-370 67-112 (149)
393 PF11846 DUF3366: Domain of un 47.3 58 0.0013 29.9 6.4 33 741-773 140-173 (193)
394 KOG2471 TPR repeat-containing 47.1 3.7E+02 0.0081 28.4 14.8 76 713-790 286-380 (696)
395 KOG0687 26S proteasome regulat 47.1 3E+02 0.0066 27.3 13.6 19 684-702 112-130 (393)
396 PRK09687 putative lyase; Provi 47.1 2.9E+02 0.0064 27.2 27.2 135 376-526 141-276 (280)
397 KOG0292 Vesicle coat complex C 46.4 5.1E+02 0.011 29.8 22.5 95 423-517 1002-1119(1202)
398 PF14561 TPR_20: Tetratricopep 46.2 1.1E+02 0.0025 23.7 6.8 40 700-739 12-51 (90)
399 PF10366 Vps39_1: Vacuolar sor 46.1 1.4E+02 0.0029 24.3 7.4 27 554-580 41-67 (108)
400 PF08424 NRDE-2: NRDE-2, neces 45.2 3.4E+02 0.0074 27.4 16.8 77 183-260 48-127 (321)
401 KOG2659 LisH motif-containing 45.1 1E+02 0.0022 28.7 7.2 46 758-803 78-127 (228)
402 PF14561 TPR_20: Tetratricopep 44.9 1.5E+02 0.0032 23.1 7.9 56 194-249 16-72 (90)
403 COG1747 Uncharacterized N-term 44.7 4.2E+02 0.0091 28.3 24.1 60 308-370 67-126 (711)
404 PRK15180 Vi polysaccharide bio 44.4 4E+02 0.0087 28.0 33.5 88 495-584 711-808 (831)
405 KOG4507 Uncharacterized conser 43.9 1.1E+02 0.0025 32.7 8.1 85 179-264 620-705 (886)
406 PF04910 Tcf25: Transcriptiona 43.5 3.9E+02 0.0084 27.6 17.3 53 174-226 111-165 (360)
407 PF14853 Fis1_TPR_C: Fis1 C-te 43.4 78 0.0017 21.6 4.8 35 611-647 6-40 (53)
408 PF10579 Rapsyn_N: Rapsyn N-te 43.3 74 0.0016 23.9 4.9 46 459-504 18-65 (80)
409 PF11663 Toxin_YhaV: Toxin wit 43.3 21 0.00046 29.8 2.4 30 723-754 108-137 (140)
410 PRK05414 urocanate hydratase; 41.8 1.6E+02 0.0034 31.2 8.7 21 569-589 242-262 (556)
411 TIGR02710 CRISPR-associated pr 40.8 2.5E+02 0.0053 29.0 9.9 55 612-666 136-196 (380)
412 cd08819 CARD_MDA5_2 Caspase ac 40.7 1.7E+02 0.0036 22.6 7.4 33 460-497 49-81 (88)
413 COG0735 Fur Fe2+/Zn2+ uptake r 40.2 1.1E+02 0.0023 26.6 6.4 41 193-233 13-53 (145)
414 KOG3677 RNA polymerase I-assoc 39.9 1.9E+02 0.0041 29.7 8.6 98 58-158 199-299 (525)
415 PRK10564 maltose regulon perip 39.3 53 0.0012 32.0 4.8 42 745-786 257-299 (303)
416 PF09454 Vps23_core: Vps23 cor 39.1 1.1E+02 0.0025 21.9 5.3 55 742-797 5-60 (65)
417 PF11838 ERAP1_C: ERAP1-like C 39.0 4.2E+02 0.009 26.6 19.6 109 323-436 146-261 (324)
418 KOG2396 HAT (Half-A-TPR) repea 38.7 5.2E+02 0.011 27.6 41.2 81 150-231 90-171 (568)
419 PF14929 TAF1_subA: TAF RNA Po 38.6 5.7E+02 0.012 28.1 13.7 101 144-247 322-423 (547)
420 KOG0292 Vesicle coat complex C 38.6 78 0.0017 35.7 6.3 75 647-738 626-700 (1202)
421 PF12862 Apc5: Anaphase-promot 38.2 75 0.0016 24.9 4.8 52 722-773 10-70 (94)
422 KOG4642 Chaperone-dependent E3 38.0 3.6E+02 0.0078 25.6 11.2 118 562-701 20-142 (284)
423 PF06957 COPI_C: Coatomer (COP 37.4 3.1E+02 0.0067 28.8 10.1 22 558-579 124-145 (422)
424 PF11846 DUF3366: Domain of un 36.7 1E+02 0.0022 28.2 6.3 30 305-334 142-171 (193)
425 PRK10941 hypothetical protein; 36.4 3.2E+02 0.0069 26.7 9.6 77 203-280 184-260 (269)
426 KOG2062 26S proteasome regulat 35.8 6.9E+02 0.015 28.2 36.4 559 215-805 38-632 (929)
427 COG2987 HutU Urocanate hydrata 35.8 5E+02 0.011 27.1 10.7 26 689-714 367-392 (561)
428 PF14689 SPOB_a: Sensor_kinase 35.7 1.1E+02 0.0023 21.8 4.7 43 114-158 8-50 (62)
429 KOG2422 Uncharacterized conser 35.3 6.2E+02 0.014 27.6 15.6 51 176-226 352-404 (665)
430 PF04190 DUF410: Protein of un 35.0 4.3E+02 0.0094 25.7 15.8 206 458-716 1-231 (260)
431 cd00280 TRFH Telomeric Repeat 35.0 2.6E+02 0.0056 25.2 7.7 70 568-652 85-154 (200)
432 KOG2908 26S proteasome regulat 35.0 3.1E+02 0.0066 27.5 8.9 57 647-703 81-142 (380)
433 PF12862 Apc5: Anaphase-promot 34.7 2E+02 0.0043 22.5 6.7 47 758-804 12-66 (94)
434 PF00627 UBA: UBA/TS-N domain; 34.7 75 0.0016 19.5 3.4 32 766-802 5-37 (37)
435 KOG0890 Protein kinase of the 34.4 1.2E+03 0.026 30.7 38.8 323 136-477 1388-1732(2382)
436 COG5108 RPO41 Mitochondrial DN 33.6 2.8E+02 0.006 30.5 9.1 91 312-405 33-131 (1117)
437 KOG3636 Uncharacterized conser 33.3 5.7E+02 0.012 26.6 13.8 89 405-494 176-272 (669)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 32.9 3E+02 0.0064 23.1 11.4 43 149-191 81-124 (126)
439 PF11459 DUF2893: Protein of u 32.6 1.5E+02 0.0033 21.6 5.0 59 27-92 5-63 (69)
440 smart00386 HAT HAT (Half-A-TPR 32.5 73 0.0016 18.1 3.2 14 726-739 3-16 (33)
441 KOG2396 HAT (Half-A-TPR) repea 32.3 6.5E+02 0.014 26.9 37.5 92 677-770 461-556 (568)
442 COG4259 Uncharacterized protei 31.1 2.5E+02 0.0054 22.2 6.1 59 111-171 52-110 (121)
443 PF11768 DUF3312: Protein of u 31.0 5.9E+02 0.013 27.6 11.0 24 275-298 412-435 (545)
444 PF06957 COPI_C: Coatomer (COP 30.4 6.5E+02 0.014 26.5 11.1 31 379-409 302-332 (422)
445 PRK14956 DNA polymerase III su 29.8 7.3E+02 0.016 26.7 12.1 36 376-411 247-282 (484)
446 PRK11639 zinc uptake transcrip 29.0 2.6E+02 0.0057 24.9 7.3 48 611-658 30-77 (169)
447 KOG2168 Cullins [Cell cycle co 29.0 9.5E+02 0.021 27.7 29.0 24 347-370 330-353 (835)
448 PF03745 DUF309: Domain of unk 28.1 1.8E+02 0.0038 20.7 4.8 33 143-175 11-43 (62)
449 PF11817 Foie-gras_1: Foie gra 27.5 2.2E+02 0.0049 27.3 7.1 21 277-297 184-204 (247)
450 PF09986 DUF2225: Uncharacteri 27.3 3.9E+02 0.0085 25.0 8.4 109 651-770 87-214 (214)
451 KOG1308 Hsp70-interacting prot 27.2 1.2E+02 0.0026 30.3 4.9 90 689-780 127-218 (377)
452 PRK14956 DNA polymerase III su 27.1 6.4E+02 0.014 27.2 10.6 31 91-123 197-227 (484)
453 PHA02537 M terminase endonucle 27.0 5.5E+02 0.012 24.3 9.6 47 591-638 68-115 (230)
454 PF14853 Fis1_TPR_C: Fis1 C-te 26.9 2.1E+02 0.0046 19.5 5.8 31 487-519 6-36 (53)
455 PRK14963 DNA polymerase III su 26.8 7.8E+02 0.017 26.9 11.6 96 623-743 178-274 (504)
456 KOG0403 Neoplastic transformat 26.5 7.7E+02 0.017 25.9 27.0 61 609-672 512-574 (645)
457 PF10475 DUF2450: Protein of u 26.3 3E+02 0.0065 27.3 7.9 27 549-575 194-220 (291)
458 PHA01351 putative minor struct 26.2 9.4E+02 0.02 26.8 25.0 140 186-331 369-537 (1070)
459 PF11817 Foie-gras_1: Foie gra 26.1 1.5E+02 0.0033 28.5 5.7 56 750-805 183-244 (247)
460 smart00777 Mad3_BUB1_I Mad3/BU 26.1 1.5E+02 0.0032 24.8 4.8 43 761-803 80-123 (125)
461 PF14669 Asp_Glu_race_2: Putat 25.9 5.1E+02 0.011 23.6 16.0 25 312-336 137-161 (233)
462 PTZ00131 glycophorin-binding p 25.9 5.5E+02 0.012 23.9 20.3 254 486-778 116-409 (413)
463 cd08789 CARD_IPS-1_RIG-I Caspa 25.5 2.8E+02 0.0061 21.2 5.8 60 49-115 22-81 (84)
464 PF09670 Cas_Cas02710: CRISPR- 25.3 7.9E+02 0.017 25.6 12.2 54 209-263 140-197 (379)
465 PRK11639 zinc uptake transcrip 25.2 2.4E+02 0.0052 25.2 6.3 18 214-231 39-56 (169)
466 PRK13342 recombination factor 25.1 8.3E+02 0.018 25.8 19.3 41 311-351 231-274 (413)
467 PF05944 Phage_term_smal: Phag 25.0 2.4E+02 0.0052 23.9 5.8 22 651-672 58-79 (132)
468 PF03745 DUF309: Domain of unk 24.5 2.7E+02 0.0057 19.8 5.5 16 319-334 11-26 (62)
469 PLN03025 replication factor C 24.3 7.4E+02 0.016 24.9 11.2 99 623-780 162-260 (319)
470 KOG2422 Uncharacterized conser 24.0 9.7E+02 0.021 26.2 15.7 131 609-739 287-448 (665)
471 COG2178 Predicted RNA-binding 24.0 5.6E+02 0.012 23.4 8.9 16 425-440 134-149 (204)
472 PRK06645 DNA polymerase III su 23.8 8E+02 0.017 26.8 10.9 32 379-411 260-291 (507)
473 PF14840 DNA_pol3_delt_C: Proc 23.8 95 0.0021 26.0 3.3 30 752-781 5-34 (125)
474 PF07304 SRA1: Steroid recepto 23.4 1.6E+02 0.0035 25.9 4.7 22 139-160 98-119 (157)
475 COG2178 Predicted RNA-binding 23.4 5.8E+02 0.013 23.4 11.8 16 790-805 132-147 (204)
476 KOG1498 26S proteasome regulat 23.1 8.4E+02 0.018 25.2 15.0 24 239-262 135-158 (439)
477 PRK08691 DNA polymerase III su 23.1 7.2E+02 0.016 28.3 10.5 40 293-334 186-225 (709)
478 COG5108 RPO41 Mitochondrial DN 23.0 5.1E+02 0.011 28.7 8.8 75 205-283 33-115 (1117)
479 PF09454 Vps23_core: Vps23 cor 22.8 2E+02 0.0044 20.7 4.3 28 380-407 11-38 (65)
480 PRK10941 hypothetical protein; 22.7 7.3E+02 0.016 24.3 10.9 61 450-511 184-244 (269)
481 KOG4567 GTPase-activating prot 22.2 4.5E+02 0.0097 26.0 7.5 42 328-369 264-305 (370)
482 PF08542 Rep_fac_C: Replicatio 22.1 2.4E+02 0.0053 21.6 5.2 45 747-792 7-51 (89)
483 PF10255 Paf67: RNA polymerase 21.8 3.2E+02 0.0068 28.5 7.1 61 449-509 124-191 (404)
484 KOG4567 GTPase-activating prot 21.5 7.5E+02 0.016 24.6 8.8 57 362-423 263-319 (370)
485 PRK09462 fur ferric uptake reg 21.3 5.4E+02 0.012 22.2 8.0 34 393-426 33-66 (148)
486 PF08870 DUF1832: Domain of un 21.3 4.1E+02 0.009 21.8 6.3 35 321-356 62-96 (113)
487 PF02607 B12-binding_2: B12 bi 21.2 86 0.0019 23.4 2.4 36 722-757 13-48 (79)
488 KOG3636 Uncharacterized conser 21.1 9.6E+02 0.021 25.1 14.9 87 266-354 178-272 (669)
489 cd00280 TRFH Telomeric Repeat 21.1 6.3E+02 0.014 22.9 11.8 20 386-405 120-139 (200)
490 PRK09462 fur ferric uptake reg 21.0 4.1E+02 0.0089 23.0 6.9 46 137-182 22-68 (148)
491 cd07153 Fur_like Ferric uptake 21.0 2.6E+02 0.0056 22.8 5.5 47 137-183 6-52 (116)
492 smart00777 Mad3_BUB1_I Mad3/BU 21.0 5.1E+02 0.011 21.8 7.7 11 78-88 24-34 (125)
493 PRK07003 DNA polymerase III su 20.8 1.3E+03 0.029 26.7 14.6 30 344-374 248-277 (830)
494 cd07153 Fur_like Ferric uptake 20.4 2.6E+02 0.0057 22.8 5.4 37 390-426 13-49 (116)
495 PF10255 Paf67: RNA polymerase 20.4 5.8E+02 0.013 26.7 8.6 24 274-297 125-148 (404)
496 PRK07914 hypothetical protein; 20.4 8.9E+02 0.019 24.4 11.5 94 626-744 135-229 (320)
497 PF07678 A2M_comp: A-macroglob 20.2 5.9E+02 0.013 24.4 8.5 30 198-227 130-159 (246)
498 KOG0376 Serine-threonine phosp 20.0 2.3E+02 0.005 29.8 5.7 106 648-757 11-117 (476)
499 PRK09857 putative transposase; 20.0 5.8E+02 0.013 25.3 8.4 100 313-414 178-277 (292)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-82 Score=728.50 Aligned_cols=679 Identities=13% Similarity=0.105 Sum_probs=641.2
Q ss_pred CCCCCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHH
Q 047492 55 GIRLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFN 134 (806)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (806)
+.++++.....++..+...+.+..|+.+|+.+.. .++.++..+|..++..+.+.+.++.+..++..+.+.+..++..++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 3455677778888888888899999999999865 467788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CCccchHHHHHHhhcc
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF-ENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 213 (806)
|.++..|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|.++|++|...|. ||..||+.++++|+..
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 999999999999999999999997 46999999999999999999999999999999987 8999999999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
++++.+.+++..|.+.|..||..+||+|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999974 5778999999999999999999999
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 294 LKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
|++|.. .|+.||..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 276 f~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 351 (857)
T PLN03077 276 FFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--- 351 (857)
T ss_pred HHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Confidence 999987 8999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 374 SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|
T Consensus 352 -~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 -KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred -CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCc
Q 047492 454 ISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETP 533 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 533 (806)
+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.+..
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH
Confidence 9999999999999999999965 4778999999999999999999999999986 5999999999999999999997
Q ss_pred HHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHH
Q 047492 534 AKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLI 613 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li 613 (806)
.........+...+..+|..++|+++++|++.|++++|.++|+.+ .||..+ |+++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s-------------------~n~lI 561 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVS-------------------WNILL 561 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhh-------------------HHHHH
Confidence 666666677778899999999999999999999999999999987 567766 99999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCchhHHHHHHHhhccccH
Q 047492 614 VGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE-GHGRQVTSFIGNTLLLHALKTRDL 692 (806)
Q Consensus 614 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 692 (806)
.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++..+.+.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 693 YEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 693 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
++|.++++++. ..|+..+|++|+.+|..+|+.+.+....+++.+. .+.+...|..|.+.|+. |+|++|.++.+.|+
T Consensus 642 ~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 642 TEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999985 6789999999999999999999999999999986 35567778888899999 99999999999999
Q ss_pred HcCCCCChh
Q 047492 772 RKGYEPDQW 780 (806)
Q Consensus 772 ~~g~~p~~~ 780 (806)
+.|++++.-
T Consensus 719 ~~g~~k~~g 727 (857)
T PLN03077 719 ENGLTVDPG 727 (857)
T ss_pred HcCCCCCCC
Confidence 999988763
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-79 Score=701.96 Aligned_cols=666 Identities=13% Similarity=0.102 Sum_probs=634.7
Q ss_pred cCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHH
Q 047492 93 HHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVL 172 (806)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 172 (806)
.++...++.++..+++.|+++.|..+++.|...|.+|+..+|..++.+|.+.+.++.+..++..+.+.|..++...+|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 173 LNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
+..|++.|+.+.|..+|++|.+ ++..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.+++.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 9999999999999999999974 6888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
.+.+++..|... |..||..+|+.+|.+|++.|++++|.++|++|.. ||..+||++|.+|++.|+.++|+++|++
T Consensus 205 ~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999998 9999999999999999999999999999999963 8999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4688
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
.+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..|+..+|+.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
++.|++++|.++|++|.+ +|..+|+.++.+|+..++..++...+.+|. .+..||..+|+.++.+|++.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-hCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 999999999999999964 788999999999999999766665556664 568999999999999999999999999
Q ss_pred HHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 573 AVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLC 652 (806)
Q Consensus 573 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 652 (806)
+++..+.+.|+.++..+ +++||++|++.|++++|.++|+.+ .||..+|++++.+|+
T Consensus 510 ~i~~~~~~~g~~~~~~~-------------------~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFL-------------------PNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565 (857)
T ss_pred HHHHHHHHhCCCcccee-------------------chHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHH
Confidence 99999999999998887 999999999999999999999987 689999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh--hccCcchhhHHHHHHhhhccccchhhH
Q 047492 653 STKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML--INEQSKISLLGQLIGVFSGCIKVSQDI 730 (806)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 730 (806)
+.|+.++|.++|++|.+.|+.||..+|+.++.++.+.|.+++|.++|+.+. .+..|+..+|+.++++|.+.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999997 478899999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC-hhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 731 EGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD-QWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+++++| .+.||..+|++|+.+|.. |+.+.+....+++.+. .|+ ...|..+...|...|+|++|.++.+.|
T Consensus 646 ~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 646 NFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999998 378999999999999988 9999999888888764 554 556667788999999999999999988
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-69 Score=601.50 Aligned_cols=546 Identities=15% Similarity=0.191 Sum_probs=500.5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccC-CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHH
Q 047492 94 HTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRY-YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVL 172 (806)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 172 (806)
.+...|..++..+++.|+++.|.++|+.|...++ +++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3567888888999999999999999999999875 57888888999999999999999999999974 899999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCC-CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 047492 173 LNALVEQGCFDAVAVVSKQISMRGF-ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRF 251 (806)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (806)
+.+|++.|+++.|.++|++|.+.|+ |+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9999999999999999999999998 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhc-CCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 047492 252 EQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSL-EGYVPEVFRFNFLVSRLLKENRLMEVFDLF 330 (806)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 330 (806)
++|.++|++|... ++.||..+|+.+|.+|++.|++++|.++|++|... .++.||..+|+++|.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998 99999999999999999999999999999999753 578999999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 047492 331 MDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP 410 (806)
Q Consensus 331 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 410 (806)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 411 GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
|..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHH
Q 047492 491 GFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDL 570 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . ........+ ....|+. .......+..+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~-y~ka~~l~~--------~v~~f~~-g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--R-FEKACALGE--------PVVSFDS-GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--H-HHHHhhhhh--------hhhhhhc-cccccccchHHH
Confidence 999999999999999999999999999999999865532 1 111111111 0111110 111222344577
Q ss_pred HHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 571 ARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKL 650 (806)
Q Consensus 571 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 650 (806)
|..+|++|.+.|+.||..| |+.++.+++..+..+.+..++++|...+..|+..+|++++++
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T-------------------~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEV-------------------LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHH-------------------HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 9999999999999999988 999998888899999999999999988999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
+++. .++|..++++|...|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8543 468999999999999999874
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-68 Score=596.76 Aligned_cols=537 Identities=16% Similarity=0.177 Sum_probs=458.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHH
Q 047492 233 VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNF 312 (806)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (806)
++...|..++..+++.|++++|.++|++|...+-+.++..+++.++..|.+.|..++|+++|+.|.. ||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHH
Confidence 4567778888888888888888888888888733456777778888888888888888888888753 88888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS 392 (806)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 392 (806)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047492 393 THEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALE--RNIKLRDVTYDKFISALCKANKVEVGYLIH 470 (806)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 470 (806)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 577888888888888888888888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCC
Q 047492 471 SELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQET 550 (806)
Q Consensus 471 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (806)
++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.++...+...+.+|...+..|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888766666667777788888
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+ |+.||.+|++.|++++|.++|+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt-------------------yN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST-------------------MNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-------------------HHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887 9999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 631 EMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 631 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
+|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++..+. +.+.++....+.+..-..
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~--- 818 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS--- 818 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc---
Confidence 999999999999999999999999999999999999999999999999999986543 234555444333321110
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
...+...+..++|+.+|++|.+.|+.||..+|+.++.++.+ +..+.+..++++|...+..|+..+|++++.+|
T Consensus 819 ------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 819 ------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred ------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 11111223345699999999999999999999999977777 99999999999999999999999999999998
Q ss_pred hccCCHHHHHHHHHhhC
Q 047492 790 YNCLRTDEAERRLEEMF 806 (806)
Q Consensus 790 ~~~g~~~eA~~~l~~m~ 806 (806)
++. .++|..++++|.
T Consensus 893 ~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAA 907 (1060)
T ss_pred ccC--hHHHHHHHHHHH
Confidence 543 368999999984
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-63 Score=553.73 Aligned_cols=475 Identities=13% Similarity=0.116 Sum_probs=353.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhcc-CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDR-YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLL 173 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 173 (806)
+...++.++..+.+.|+++.|.++|+.|...+ ..|+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34466777777777777777777777776643 56777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 174 NALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
.+|++.|+++.|.++|++|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 777777777777777777753 56677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
+.+++..+... +..||..+|+.+|++|++.|++++|.++|++|.+ +|+.+||++|.+|++.|+.++|.++|++|
T Consensus 243 ~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777766 7777777777777777777777777777777753 57777777777777777777777777777
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK 413 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 413 (806)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 777777777777777777777777777777777777777777777777777777777777777777777753 5667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-cCCCCCHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR-MNKVASENTYIQLIHGF 492 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 492 (806)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777764 46777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
++.|++++|.+++++| ++.|+..+|++++.+|+..++. +......+......+.+..+|+.+++.|++.|++++|.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL-ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 7777777777776654 4677777777777777777764 33333333333334446778999999999999999999
Q ss_pred HHHHHHHHCCCccC
Q 047492 573 AVYELMQRSGLVPQ 586 (806)
Q Consensus 573 ~~~~~m~~~~~~p~ 586 (806)
++++.|.+.|+...
T Consensus 549 ~v~~~m~~~g~~k~ 562 (697)
T PLN03081 549 KVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHcCCccC
Confidence 99999999998643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-61 Score=541.97 Aligned_cols=512 Identities=14% Similarity=0.173 Sum_probs=436.5
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHH
Q 047492 163 DLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF--ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGI 240 (806)
Q Consensus 163 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (806)
.++..+|+.+|.++.+.|++++|.++|+.|...+. |+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45777999999999999999999999999987652 6888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhc
Q 047492 241 VVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKE 320 (806)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 320 (806)
|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|+++|++|.+ .|+.||..+|+.++.+|++.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcC
Confidence 99999999999999999999863 6788899999999999999999999999987 78889999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 321 NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 321 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864 68889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC
Q 047492 401 KNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA 480 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 480 (806)
++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988854 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHH
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFID 560 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
|..+||.||.+|++.|+.++|+++|++|.+.|+.| |..+|+.++.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-----------------------------------d~~T~~~ll~ 434 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-----------------------------------NHVTFLAVLS 434 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------------------------CHHHHHHHHH
Confidence 77889999999999999999999999988877666 4566888888
Q ss_pred hhhcCCChHHHHHHHHHHHH-CCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047492 561 GAGHVKRPDLARAVYELMQR-SGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP 639 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 639 (806)
+|.+.|..++|.++|+.|.+ .|+.|+..+ |+.++++|++.|++++|.+++++| ++.|
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-------------------y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMH-------------------YACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccc-------------------hHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 88888888888888888875 588888776 888888888888888888888765 4788
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+..+|++++.+|...|+++.|..+++++.+.+ |.+..+|..|+++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-----------------------------------p~~~~~y~~L~~~ 537 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMG-----------------------------------PEKLNNYVVLLNL 537 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-----------------------------------CCCCcchHHHHHH
Confidence 88888888888888888888888888876442 3344567788889
Q ss_pred hhccccchhhHHHHHHHHHcCCCCC-hhhHHHHH-------HHH---hh--hcHHHHHHHHHHHHHcCCCCChh
Q 047492 720 FSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILL-------RRL---SV--SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li-------~~~---~~--g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
|++.|++++|.+++++|.+.|+.+. ..+|..+. .+- -. .-+++..++..+|.+.|+.||..
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999987533 33443221 110 00 22455667889999999999854
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-38 Score=375.38 Aligned_cols=693 Identities=12% Similarity=0.021 Sum_probs=420.9
Q ss_pred CCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHH
Q 047492 72 KTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIAL 151 (806)
Q Consensus 72 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 151 (806)
..+++..|+.+++.+... .+.+...+..+...+...|+++.|...++..... .+.+..++..++..+...|++++|.
T Consensus 171 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~g~~~~A~ 247 (899)
T TIGR02917 171 AENRFDEARALIDEVLTA--DPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL-RPNNPAVLLALATILIEAGEFEEAE 247 (899)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555566665554322 1223445555555555566666666666655543 2344555555555555666666666
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC----------------------------------C
Q 047492 152 HLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG----------------------------------F 197 (806)
Q Consensus 152 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------------------~ 197 (806)
..++.+.+.... +...+......+...|++++|...++.+.+.+ +
T Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 248 KHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666555543211 11222222222334445555555555544443 3
Q ss_pred CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHH
Q 047492 198 ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVW 277 (806)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 277 (806)
.+...+..+...+...|++++|...++.+.+... .+...+..+...+.+.|++++|.+.|+++... .+.+...+..+
T Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 403 (899)
T TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQL 403 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 3333444444444445555555555544443332 23344444445555555555555555544432 11223344444
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 047492 278 LRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGM 357 (806)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 357 (806)
...+...|++++|.+.++.+.... +........++..+.+.|++++|..+++.+... .+.+..++..+...|...|+
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCC
Confidence 444455555555555555443311 011223333444555555555555555555443 22344555555555555666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 358 VDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 358 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (806)
+++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+.. +..++..+...+.+.|+.++|..++++
T Consensus 481 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 481 LAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555432 233444555555555556666666666655544322 445555555555556666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 438 ALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 438 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
+.+.+ +.+...+..+...|.+.|++++|..+++.+.+..+. +...|..+...+...|++++|...|+++.+.. ..+.
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 635 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSA 635 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 55543 334445555556666666666666666665544332 45556666666666666666666666655431 1233
Q ss_pred HhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHH
Q 047492 518 ALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSY 597 (806)
Q Consensus 518 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 597 (806)
..+..+..++...++. +.+...++......+.+...+..++..+...|++++|.++++.+.+.. |
T Consensus 636 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~------------ 700 (899)
T TIGR02917 636 LALLLLADAYAVMKNY-AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--P------------ 700 (899)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c------------
Confidence 3444455555555553 333333333334444455556666666666666666666666655432 2
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
.+...+..+...+...|++++|...|+.+.+. .|+..++..+..++.+.|++++|.+.++.+.+.. +.+..
T Consensus 701 ------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 701 ------KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred ------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 23335888899999999999999999999985 4555777888999999999999999999998865 34667
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
.++.+...+...|+..+|...++++....|.+..+++.++.++...|+ .+|+..++++.+. .+.+...+..+...+..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHH
Confidence 888888899999999999999999999899999999999999999999 8899999999986 35567778888999988
Q ss_pred -hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhhC
Q 047492 758 -SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEMF 806 (806)
Q Consensus 758 -g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m~ 806 (806)
|++++|.+.|+++.+.+.. |..++..+..++.+.|+.++|.+++++|+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999998765 88899999999999999999999999985
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.9e-37 Score=361.95 Aligned_cols=712 Identities=12% Similarity=0.026 Sum_probs=545.9
Q ss_pred cCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhH
Q 047492 71 KKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIA 150 (806)
Q Consensus 71 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 150 (806)
...+++..|...|+-+.... +.+...+..+...+...|+++.|..+++.+... .+.+...+..+...+...|++++|
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A 212 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTA-DPGNVDALLLKGDLLLSLGNIELA 212 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCCHHHH
Confidence 34678899999998775432 234567888889999999999999999998774 466788899999999999999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 151 LHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 151 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
...|++..... +.+..++..+...+...|++++|...++.+.+..+.+...+......+...|++++|...|+.+.+.+
T Consensus 213 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 213 LAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999998763 33667888899999999999999999999998877666666566666778899999999999988766
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH
Q 047492 231 ECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF 310 (806)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (806)
.. +...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...++.+... ...+...+
T Consensus 292 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 366 (899)
T TIGR02917 292 PE-YLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAAL 366 (899)
T ss_pred CC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 42 2334445566777888899998888887764 2334556777778888888888888888887642 23456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD 390 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 390 (806)
..+...+.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.|+.+.+... ........++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhc
Confidence 7788888888888888888888876532 3556667777777888888888888888776431 2334555667777788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047492 391 GSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIH 470 (806)
Q Consensus 391 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 470 (806)
|++++|.++++++.... ..+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877643 3356677777788888888888888888877654 445556667777778888888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCC
Q 047492 471 SELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQET 550 (806)
Q Consensus 471 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (806)
+.+...++. +..++..+...+.+.|+.++|...++++.+.+ ..+...+..+...+...++. ..+...++......+.
T Consensus 523 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 523 EKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL-KKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCC
Confidence 887766544 66777777778888888888888888776642 23445566666777777774 3444444444555566
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcch-hHHHHHHHHhhh---------------CCCCchhHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGS-NILMLQSYLKRK---------------NGIPRKLYNTLIV 614 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~~~~~~~~~~---------------~~~~~~~~~~li~ 614 (806)
++..|..+...|...|++++|...|+++.+. .|+... +..+...+...+ .+.+..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7777788888888888888888888777753 233222 333333333222 2334567889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHH
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYE 694 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 694 (806)
.+...|++++|..+++.+.+.+ ..+...+..+...+...|++++|.+.++.+...+... ..+..+...+...|+..+
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998864 4566778888889999999999999999998876443 566677888999999999
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 695 AWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 695 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|...++.+....|.+..++..++..|...|+.++|+..|+++.+. .+.+...++.+...+.. |+ .+|+..++++...
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987 46788899999999999 88 8899999999876
Q ss_pred CCCCChhhHHHHHhhhhccCCHHHHHHHHHhhC
Q 047492 774 GYEPDQWTFDILKCGLYNCLRTDEAERRLEEMF 806 (806)
Q Consensus 774 g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m~ 806 (806)
. +-+..++..+..++.+.|++++|.+++++++
T Consensus 833 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 833 A-PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 2355667788899999999999999998864
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-26 Score=269.65 Aligned_cols=653 Identities=11% Similarity=0.009 Sum_probs=404.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhH-------
Q 047492 97 ATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAY------- 169 (806)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~------- 169 (806)
...-..++..-..++.+.|.+.++++... .+.++.++..++..+.+.|+.++|.+.+++..+. .|+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~-~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELI-DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHH
Confidence 34556677777888999999999988874 4557888888999999999999999999999877 4444332
Q ss_pred ----------HHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc-chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhH
Q 047492 170 ----------HVLLNALVEQGCFDAVAVVSKQISMRGFENDV-TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMI 238 (806)
Q Consensus 170 ----------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 238 (806)
......+...|++++|...|+.+....+++.. ....+.......|+.++|.+.++++.+..+ .+...+
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~ 184 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLR 184 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHH
Confidence 22233567788899999999888877665543 111122222345888889999988888754 455677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRL 317 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 317 (806)
..+...+...|++++|+..++++... . +.. ...+...+..+.. .+..++ ...+...+..+
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~-~--~~~---------------~~aa~~~~~~l~~-~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKS-P--AGR---------------DAAAQLWYGQIKD-MPVSDASVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC-C--Cch---------------HHHHHHHHHHHhc-cCCChhhHHHHHHHHHHC
Confidence 78888888889999999888887653 1 100 0001111111100 000000 11111112222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY 397 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 397 (806)
-.......|...+..+......|+... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|.
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 222223344444444333222222111 122334445566666666666555432 224455555556666666666666
Q ss_pred HHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 398 EVLKNSIDHGLFP-GKKTL------------SILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464 (806)
Q Consensus 398 ~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 464 (806)
..|++..+..... ....+ ......+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 324 ~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 324 AQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 6666655432211 11111 111233445566666666666665553 334445555556666666666
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------CHHhHHHHHHHHHccCCcHHH
Q 047492 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKP--------TRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 465 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~~~~~~~ 536 (806)
+|.+.|++..+..+. +...+..+...|. .++.++|+.+++.+....... ....+......+...++ ...
T Consensus 403 eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~-~~e 479 (1157)
T PRK11447 403 AAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK-WAQ 479 (1157)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC-HHH
Confidence 666666666554433 3444444444443 345566665555433210000 00112222333444444 333
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
+...++......+.++..+..+...|.+.|++++|...++++.+. .|+... .+..+...+
T Consensus 480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~------------------~~~a~al~l 539 (1157)
T PRK11447 480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPE------------------QVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHH------------------HHHHHHHHH
Confidence 344444444445556777788888999999999999999998853 454432 233444556
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSME---------CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
...++.++|+..++.+......++.. .+......+...|+.++|.++++. .+.+......+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence 77899999999988765432222221 123456678889999999999872 2345556677888899
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
+.|+.++|...++++....|.+...+..++..|...|+.++|+..++.+.+. .+.+...+..+..++.. |++++|.++
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988875 23455667777888888 999999999
Q ss_pred HHHHHHcCCC--C---ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 767 FNRMRRKGYE--P---DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 767 ~~~m~~~g~~--p---~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
++++...... | +...+..+...+...|+.++|++.+++
T Consensus 694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999865322 2 224566677888999999999999875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.3e-24 Score=255.62 Aligned_cols=621 Identities=11% Similarity=0.007 Sum_probs=415.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHH----------------HHHHHHHHhcCChhhHHHHHHHHh
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFN----------------DTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
++..+..++..+.+.|+.+.|.+.++.+.+.. |.+.... ..+...+.+.|++++|++.|+.+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 56778888899999999999999999998864 2232222 233446888999999999999998
Q ss_pred hcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC--H
Q 047492 159 FQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS--G 235 (806)
Q Consensus 159 ~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~ 235 (806)
+.+ .|+.. ............|+.++|++.++++.+..+.+...+..+...+...|+.++|.+.++++.+...... .
T Consensus 140 ~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 140 NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 652 22321 1111111222458999999999999999888888899999999999999999999999876432110 0
Q ss_pred H-----------------hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 236 F-----------------MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 236 ~-----------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
. .+...+..+-.....+.|...+...... ...|... .......+...|++++|+..|++..
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFR-ARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 1111111111222234444555444332 2222211 1223455667788888888888876
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH------------HHHHHHHHHcCChHHHHHHH
Q 047492 299 SLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP-DGVTM------------NTVLCFFCKAGMVDVAIELY 365 (806)
Q Consensus 299 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~------------~~ll~~~~~~g~~~~a~~~~ 365 (806)
.. .+.+...+..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|++++|+..|
T Consensus 297 ~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 297 RA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 52 12245667777788888888888888888877643211 11111 11233556778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 047492 366 KSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI-- 443 (806)
Q Consensus 366 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 443 (806)
+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 8877653 334566667777888888888888888887765322 3445555555553 4567777777765432210
Q ss_pred ------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 444 ------KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 444 ------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
......+..+...+...|++++|.+.+++..+..+. +...+..+...|.+.|++++|...++++.+. .|+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~- 527 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPN- 527 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-
Confidence 011123445666777788888888888887776655 6666777777888888888888888887652 332
Q ss_pred HhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHH
Q 047492 518 ALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSY 597 (806)
Q Consensus 518 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 597 (806)
++..+..+...+...++.++|...++.+......++......-+
T Consensus 528 ---------------------------------~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l--- 571 (1157)
T PRK11447 528 ---------------------------------DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL--- 571 (1157)
T ss_pred ---------------------------------CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH---
Confidence 22233333334456778888888887765332222211100000
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
....+..+...+...|++++|..+++. .+.+...+..+...+.+.|++++|++.++.+.+..+ .+..
T Consensus 572 -------~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~ 638 (1157)
T PRK11447 572 -------QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNAD 638 (1157)
T ss_pred -------hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH
Confidence 000134567788899999999999872 244556677788899999999999999999998754 3556
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC--C---ChhhHHHHH
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP--L---DTYTYNILL 752 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~li 752 (806)
....+...+...|+..+|...++.+....|.+...+..+..++...|+.++|.++++++...... | +...+..+.
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 77788888999999999999999988777778888888999999999999999999999885321 1 123555667
Q ss_pred HHHhh-hcHHHHHHHHHHHHH-cCCCC
Q 047492 753 RRLSV-SEIDHACELFNRMRR-KGYEP 777 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~-~g~~p 777 (806)
..+.. |++++|+..|++... .|+.|
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 77778 999999999999863 34543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=4.6e-21 Score=214.38 Aligned_cols=631 Identities=11% Similarity=0.024 Sum_probs=341.9
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
...|+++.|...|+...+.. |.+..++..+...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 34488888888888887753 445788888888888889988998888888876 56555555544333 8888888
Q ss_pred HHHHHHHhcCCCCccchHHHHHH--------hhccCCHHHHHHHHHHhHhCCCCCCHHhHHHH-HHHHHhcCCHHHHHHH
Q 047492 187 VVSKQISMRGFENDVTRTIMLKC--------LCKQKKIDEAVEYFQQLVSGRECVSGFMIGIV-VDALCKNSRFEQAGKL 257 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 257 (806)
.+++++....+.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+++
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888888888777777766665 5555 44555444 3333333344444444 7888888888888888
Q ss_pred HHHhhhCCCCCcchhhHHHHHHHHHH-cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047492 258 LEDFKDRDDVVKLEKAYDVWLRNLVR-AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
+.++.+. + +.+..-...+-..|.. .++ +++..+++. ....+...+..+...+.+.|+.++|.++++++...
T Consensus 205 L~~L~k~-~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 205 YNEARQQ-N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHhc-C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 8888876 2 2333445556667776 356 777776442 22356777888888888888888888888887654
Q ss_pred CCC-CChhhHHHHHHHHHHcCChH-HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 047492 337 QIS-PDGVTMNTVLCFFCKAGMVD-VAIELYKSRSEFGLSPNG-IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK 413 (806)
Q Consensus 337 g~~-~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 413 (806)
-.. |+..++--+ +.+.+... .|..-|.. + ..++. ...-.++..+.+.++++.+.++.. +.|...
T Consensus 277 ~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 277 FTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 222 333333332 23333321 01111110 0 00111 112223555566666665544421 122222
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc--CCCCCHHHHHHHH
Q 047492 414 TLSILADALC--RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM--NKVASENTYIQLI 489 (806)
Q Consensus 414 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li 489 (806)
. ..+.... ..+...++...+..|.+.. +-+......+.-...+.|+.++|.++++..... +..++.....-++
T Consensus 344 ~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 344 M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 2 1222111 2234444444444444432 223333334444445566666666666655442 1111333344555
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHHC-CCCC---CHHhHHHHHHHHHccCCcHHHHHHH
Q 047492 490 HGFNKSNR---ADIAARL----------------------LVEMEEN-GHKP---TRALHRAVIRCLCNMETPAKQFLQL 540 (806)
Q Consensus 490 ~~~~~~~~---~~~a~~~----------------------~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~ 540 (806)
..|.+.+. ..++..+ +...... +..| +...+..+-.++.. +...+++..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 55555554 2222222 1111110 1112 23333333333333 3323322222
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM 620 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 620 (806)
.+.. ... |+......+...+...|++++|...|+++... .|+... +..+...+.+.|
T Consensus 500 ~~Al-~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a-------------------~~~la~all~~G 556 (987)
T PRK09782 500 LQAE-QRQ-PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED-------------------LLAAANTAQAAG 556 (987)
T ss_pred HHHH-HhC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH-------------------HHHHHHHHHHCC
Confidence 2222 111 22222222333334566666666666665432 222222 445555666666
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHH
Q 047492 621 KANLAWGFMREMRHNGMYPS-MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRL 699 (806)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 699 (806)
++++|...++...+.+ |+ ...+..+...+.+.|++++|...+++..+..+ +...+..+...+.+.|+.++|...+
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666666532 22 22222232333345667777766666665543 3445555666666666777777766
Q ss_pred HhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC
Q 047492 700 RGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD 778 (806)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~ 778 (806)
+++....|.+...++.+..++...|+.++|+..++++.+. .|.+...+..+..++.. |++++|...|++.... .|+
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~ 709 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDN 709 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 6666666666666666666666666667776666666664 24445566666666666 6677776666666643 333
Q ss_pred h-hhHHHHHhhhhccCCHHHHHHHH
Q 047492 779 Q-WTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 779 ~-~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
. .+.........+..+++.|.+-+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3 23333444455555555555433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=4.6e-19 Score=198.48 Aligned_cols=655 Identities=12% Similarity=0.038 Sum_probs=441.2
Q ss_pred CCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHH
Q 047492 72 KTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIAL 151 (806)
Q Consensus 72 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 151 (806)
..+++..|+..|+-+.... +.+...+..+.+.+.+.|+++.|...++...+.. +.+...+..+ ..+ +++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 3478889999999885433 2247888999999999999999999999998852 3444444444 323 9999999
Q ss_pred HHHHHHhhcCCCCC-hhhHHHHHHH--------HHhcCCcchHHHHHHHHHhcCC-CCccchHH-HHHHhhccCCHHHHH
Q 047492 152 HLFGKMRFQGMDLD-DYAYHVLLNA--------LVEQGCFDAVAVVSKQISMRGF-ENDVTRTI-MLKCLCKQKKIDEAV 220 (806)
Q Consensus 152 ~~~~~m~~~~~~p~-~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~-li~~~~~~g~~~~a~ 220 (806)
.+|+++... .|+ ..++..+... |.+. ++|.+.++ .....+ |+..+... +...|.+.|++++|.
T Consensus 129 ~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 129 TTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 999999887 554 3444444444 4444 55555555 322222 23444444 489999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 221 EYFQQLVSGRECVSGFMIGIVVDALCK-NSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
+++.++.+.++ .+......|..+|.. .++ +.+..+++. ...-+...+..+...|.+.|+.++|.++++++..
T Consensus 203 ~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 203 TLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999876 445667777778887 366 777777542 3346778899999999999999999999999865
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 047492 300 LEGYVPEVFRFNFLVSRLLKENRLM-EVFDLFMDMKEGQISPDG-VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG 377 (806)
Q Consensus 300 ~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (806)
...-.|+..++--. +.+.+... .+..-|.+ ...++. .....++..+.+.++++.++++.. +.|..
T Consensus 276 ~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 342 (987)
T PRK09782 276 LFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPAN 342 (987)
T ss_pred cccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcc
Confidence 33333555444433 34444332 11111111 011111 112233677778888886665522 23333
Q ss_pred HHHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH
Q 047492 378 IVYNYLINS--LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER--NIKLRDVTYDKF 453 (806)
Q Consensus 378 ~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l 453 (806)
... .+.. ....+...++.+.++.|.+.... +....-.+--...+.|+.++|.++++..... +-.++.....-+
T Consensus 343 ~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EML--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hHH--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 321 2222 22345666676667777665221 4444444444556778888888888877652 123344455567
Q ss_pred HHHHHhcCCh---hHHHHH----------------------HHHHhhc-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 454 ISALCKANKV---EVGYLI----------------------HSELSRM-NK-VA--SENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 454 l~~~~~~~~~---~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
+..|.+.+.+ .++..+ ++..... .. .+ +...|..+..++.. ++.++|+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 7777766552 222222 1111111 11 22 56677888877776 899999998
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc
Q 047492 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 584 (806)
+.+... ..|+......+...+...++...+...+.+ ... .+++...+..+...+.+.|+.++|...+++..+..
T Consensus 499 ~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-a~~-~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-- 572 (987)
T PRK09782 499 WLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQK-ISL-HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-- 572 (987)
T ss_pred HHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHH-Hhc-cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 888877 357765544555555677885444444433 333 34455556777888899999999999999998653
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVM 664 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 664 (806)
|+... .+..+...+...|++++|...+++..+ +.|+...|..+..++.+.|++++|...+
T Consensus 573 P~~~~------------------l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 573 LGDNA------------------LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CccHH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 54422 133344445566999999999999998 5677888999999999999999999999
Q ss_pred HHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 665 NHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
+......+ .+...++.+...+...|+.++|...++++....|.+...+..+..+|...|++++|+..++++.+. .|+
T Consensus 633 ~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~ 709 (987)
T PRK09782 633 RAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDN 709 (987)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 99988853 345677778888999999999999999999999999999999999999999999999999999986 454
Q ss_pred h-hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCC
Q 047492 745 T-YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLR 794 (806)
Q Consensus 745 ~-~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 794 (806)
. .+.......... .+++.|.+-+.+-.. +.|+..+-......+...|+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhhccc
Confidence 4 445455555666 778888887776654 45555544344444444444
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.2e-17 Score=172.09 Aligned_cols=642 Identities=12% Similarity=0.027 Sum_probs=432.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhHhc------cCCc-chhHHHHHHHHHHhc-----------CChhhHHHHHHHHh
Q 047492 97 ATFHAIFKLLHCAKLTPLMVDFLENYKKD------RYYH-QVRFNDTLVMGYALA-----------GKPDIALHLFGKMR 158 (806)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~------~~~~-~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~ 158 (806)
..|..+...+.+.|..+++..+++.-... ++.. -...++.+...|+.. ..+..|..+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 35666777788899999999998887622 1111 111222222223222 12334555555554
Q ss_pred hcCCCCChhhHHHHHHHHHhcCC--cchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCC--CCCC
Q 047492 159 FQGMDLDDYAYHVLLNALVEQGC--FDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR--ECVS 234 (806)
Q Consensus 159 ~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 234 (806)
.....-++. +..--..|...|. ++.|...|..+.+..+++...+..-.......|++..|..+|......+ ..+|
T Consensus 122 ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD 200 (1018)
T KOG2002|consen 122 KIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD 200 (1018)
T ss_pred HhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC
Confidence 331111111 1111112333443 5889999999998877776665555555567889999999999966543 3344
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch-hhHHHHHHHHHH---cCCHHHHHHHHHhhhhcCCCCCCcccH
Q 047492 235 GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE-KAYDVWLRNLVR---AGRLDLALEFLKSKNSLEGYVPEVFRF 310 (806)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (806)
+.+ .+..++.+.|+.+.|+..|.+..+. .|+. .++..|.-.-.. ...+..++.++...-... .-+++..
T Consensus 201 ~rI--gig~Cf~kl~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l 273 (1018)
T KOG2002|consen 201 VRI--GIGHCFWKLGMSEKALLAFERALQL---DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVAL 273 (1018)
T ss_pred ccc--hhhhHHHhccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHH
Confidence 322 3345677999999999999998865 3422 222222211112 234566667666655322 3456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEGQIS--PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG--IVYNYLINS 386 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~ 386 (806)
+.|.+.|.-.|++..+..+...+...-.. .-...|-.+.++|-..|++++|...|.+..+.. ++. ..+-.+.+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHH
Confidence 88999999999999999999988875321 123457778899999999999999998877643 443 455567889
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047492 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG----KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK 462 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 462 (806)
|.+.|+.+.+...|+...+... -+..|...+...|...+ ..+.|..++....+.. +.|...|-.+...+-...-
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh
Confidence 9999999999999999987632 25556666666666664 4577777777776654 5666777777777665444
Q ss_pred hhHHHHHHHH----HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHccCCcHH
Q 047492 463 VEVGYLIHSE----LSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN---GHKPTRALHRAVIRCLCNMETPAK 535 (806)
Q Consensus 463 ~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~ 535 (806)
+ .+..++.. +...+..+.+...|.+...+...|++.+|...|.+.... ...+|.
T Consensus 430 ~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de------------------ 490 (1018)
T KOG2002|consen 430 W-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE------------------ 490 (1018)
T ss_pred H-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc------------------
Confidence 3 33555543 334555578889999999999999999999999998764 111111
Q ss_pred HHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHH
Q 047492 536 QFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVG 615 (806)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 615 (806)
+..++..+--.+...+-..++.+.|.+.|..+.+. .|+.+. .|--++..
T Consensus 491 -----------~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId------------------~ylRl~~m 539 (1018)
T KOG2002|consen 491 -----------GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID------------------AYLRLGCM 539 (1018)
T ss_pred -----------cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH------------------HHHHhhHH
Confidence 01122222222334445567889999999998854 465543 24334322
Q ss_pred HHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCchhHHHHHHHhhc-----
Q 047492 616 LCKAMKANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR-QVTSFIGNTLLLHALK----- 688 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----- 688 (806)
....++..+|...+++.... ...|+ .+..+...+.+...+.-|.+-++.+.+.-. .+|++..-.|...+.+
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 22346778888888887763 33344 444455577777788888886666654433 2466666556554442
Q ss_pred -------cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcH
Q 047492 689 -------TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEI 760 (806)
Q Consensus 689 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~ 760 (806)
.+..+.|+..|.+++...|.+...-|-+.-.++.+|++.+|+.+|.++.+.. ..+..+|-.+..+|.- |++
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999974 3466788899999999 999
Q ss_pred HHHHHHHHHHHHc-CCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 761 DHACELFNRMRRK-GYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 761 ~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
..|+++|+..... +.+-+......|.+++.++|.+.+|++.+.
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999997766 445677788899999999999999998764
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.3e-16 Score=163.49 Aligned_cols=569 Identities=12% Similarity=0.013 Sum_probs=375.7
Q ss_pred chhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhc--cCCcchhHHHHHHHHHHhcCChhhHHHH
Q 047492 76 VLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKD--RYYHQVRFNDTLVMGYALAGKPDIALHL 153 (806)
Q Consensus 76 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~ 153 (806)
...|..-|.++.++.+ .+.-.+-.-..+....+++..+..++...... ..++++.+ .+-..+.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 4567777887766542 24444444455666778888898888885544 34455544 344667788999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHH---Hh---cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhH
Q 047492 154 FGKMRFQGMDLDDYAYHVLLNAL---VE---QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLV 227 (806)
Q Consensus 154 ~~~m~~~~~~p~~~~~~~ll~~~---~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 227 (806)
|++..+. .| ...++++... .. ...+..+..++...-.....++...+.|...|.-.|+++.+.++.+.+.
T Consensus 222 ~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999877 33 3233322211 11 2235567777777777777788899999999999999999999998887
Q ss_pred hCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch--hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCC
Q 047492 228 SGREC--VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE--KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGY 303 (806)
Q Consensus 228 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 303 (806)
..... .-...|-.+..+|...|++++|...|.+.... .++. ..+.-+...+.+.|+++.+...|+.+...
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--- 371 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--- 371 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh---
Confidence 65421 12345778889999999999999999877654 3333 34556778899999999999999988752
Q ss_pred CCC-cccHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH----hCCCC
Q 047492 304 VPE-VFRFNFLVSRLLKEN----RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS----EFGLS 374 (806)
Q Consensus 304 ~~~-~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~ 374 (806)
.|| ..+...+-..|...+ ..+.|..++.+..+.- +.|...|-.+-..+-. ++...++..|.... ..+-.
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC
Confidence 344 445555555555543 4566777777666643 3466677666666654 44444466665533 34445
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047492 375 PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH---GLFPGK------KTLSILADALCRDGKFEQMKDLVIFALERNIKL 445 (806)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (806)
+-....|.+.......|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.++.+.+.. +.
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~ 528 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PG 528 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-ch
Confidence 77788899999999999999999999887754 122222 223335555666778999999999988764 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN-GHKPTRALHRAVI 524 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll 524 (806)
-...|-.+....-..+...+|...++.....+.. ++..+..+...+.+..++..|.+-|+...+. ...+|..+..++-
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 3334444443333446788888888888776555 7778888888888888898888877776653 2235666655555
Q ss_pred HHHHc----cCC-c------HHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC-ccCcchhHH
Q 047492 525 RCLCN----MET-P------AKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL-VPQLGSNIL 592 (806)
Q Consensus 525 ~~~~~----~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ 592 (806)
..+.. ..+ . ...+..+........+.|...-|-+.-.++..|++.+|..+|.+.++... .++.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv----- 682 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV----- 682 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce-----
Confidence 43322 111 1 12222333444555566666667777777777777777777777776543 2222
Q ss_pred HHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 047492 593 MLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHG 671 (806)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 671 (806)
|-.+..+|...|+|..|+++|+...+. .-..+......|.+++.+.|.+.+|.+.+.......
T Consensus 683 ----------------~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 683 ----------------WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred ----------------eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 667777777777777777777765553 444466667777777777777777777777766665
Q ss_pred CCCCchhHHHHH
Q 047492 672 RQVTSFIGNTLL 683 (806)
Q Consensus 672 ~~~~~~~~~~l~ 683 (806)
+......+|..+
T Consensus 747 p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 747 PSNTSVKFNLAL 758 (1018)
T ss_pred CccchHHhHHHH
Confidence 555555555543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=7.8e-19 Score=173.15 Aligned_cols=432 Identities=13% Similarity=0.022 Sum_probs=307.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
.|..-.-+.|++++|.+-....-+. .|+ ....-.+-..+.+..+.+.....-....+..+.-..+|..+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4444555677777777766665444 221 1122222223344445554444444444444455667888888888888
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHH-HHHHHcCCHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWL-RNLVRAGRLDLALEF 293 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~ 293 (806)
++++|..+++.+++... .....|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+-..|++++|...
T Consensus 131 ~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888888877654 4556777788888888888888888877664 355544333322 333446788888887
Q ss_pred HHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 047492 294 LKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD-GVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371 (806)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 371 (806)
+.+..+ ..|. ...|+.|-..+-.+|+...|+..|++..+. .|+ ...|-.|-..|...+.++.|...|.+....
T Consensus 207 YlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 777654 2343 566777888888888888999888888774 343 446777788888888888888888876653
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047492 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYD 451 (806)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (806)
. +.....+..|...|...|+.+.|+..+++..+.... -...|+.|..++-..|++.+|.+.+...+... +......+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 2 234567777777888889999999999988876433 35678889999988999999999998888765 44556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047492 452 KFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNME 531 (806)
Q Consensus 452 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 531 (806)
.|...|...|.+++|..+|....+-.+. -....+.|...|.+.|++++|+..|++.+. ++|+.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f-------------- 421 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF-------------- 421 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH--------------
Confidence 8888999999999999988887765433 345678888889999999999999998876 66652
Q ss_pred CcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHH
Q 047492 532 TPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNT 611 (806)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (806)
...|+.+.+.|...|+.+.|.+.+.+.+ .+.|...- +++.
T Consensus 422 --------------------Ada~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~Ae------------------AhsN 461 (966)
T KOG4626|consen 422 --------------------ADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAE------------------AHSN 461 (966)
T ss_pred --------------------HHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHH------------------HHhh
Confidence 3456667777888888999998888877 45565443 4788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPS 640 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 640 (806)
|.+.|-..|++.+|++-|++..+ ++||
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 88899999999999999988887 5665
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-18 Score=171.28 Aligned_cols=446 Identities=15% Similarity=0.089 Sum_probs=355.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
-..+..-..+.|++.+|++....+-..++.+......+-..+.+..+.+....--....+... .-..+|+.+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHh
Confidence 344555566889999999998888877776666666666677777777766554444433332 4567899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHH-HHHHhcCCHHHHH
Q 047492 249 SRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV-SRLLKENRLMEVF 327 (806)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~ 327 (806)
|++++|+..++.+.+. .+-....|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ +.+-..|++++|.
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999874 233567899999999999999999999998865 567766555444 3444579999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 328 DLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPN-GIVYNYLINSLCGDGSTHEAYEVLKNSIDH 406 (806)
Q Consensus 328 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 406 (806)
..+.+..+... -=...|+.|...+-..|+...|+..|++..+. .|+ ...|-.|-..|...+.++.|...+.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 99888776421 23567888888888999999999999998874 455 457888889999999999999999887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 047492 407 GLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYI 486 (806)
Q Consensus 407 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 486 (806)
... ....+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|+..+.......+. .....+
T Consensus 282 rpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~ 358 (966)
T KOG4626|consen 282 RPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMN 358 (966)
T ss_pred CCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHH
Confidence 322 45567778888899999999999999998875 344578999999999999999999999998877655 667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 566 (806)
.|...|...|.+++|..+|....+ +.|. -...+|.+...|...|
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~----------------------------------~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPE----------------------------------FAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChh----------------------------------hhhhhhhHHHHHHhcc
Confidence 899999999999999999998876 4443 1334677888899999
Q ss_pred ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 047492 567 RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-MECYE 645 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~ 645 (806)
+.++|..-|++.. .+.|+..- +|+.+...|-..|+.+.|++.+.+.+. ++|. ...++
T Consensus 403 nl~~Ai~~Ykeal--rI~P~fAd------------------a~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhs 460 (966)
T KOG4626|consen 403 NLDDAIMCYKEAL--RIKPTFAD------------------ALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHS 460 (966)
T ss_pred cHHHHHHHHHHHH--hcCchHHH------------------HHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHh
Confidence 9999999999998 66887664 588999999999999999999999887 6775 45677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
.|...|-.+|++.+|++-++..++..+......+|.+.-
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 888899999999999999999998876655555565543
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.1e-18 Score=183.51 Aligned_cols=302 Identities=14% Similarity=0.033 Sum_probs=219.8
Q ss_pred HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc--chhhHHHHHHHHHHcCC
Q 047492 209 CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK--LEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 286 (806)
.+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.+.......+ ....+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556667777777777766543 3445666677777777777777777776665411111 12456666777777777
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG----VTMNTVLCFFCKAGMVDVAI 362 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~ 362 (806)
+++|+.+|+++.+. ...+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777642 2345667777788888888888888888888775433221 23455667778889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998887643 334567777888889999999999999998876433334567888889999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 443 IKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK---SNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 443 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.+++|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55566788889999999999999999988766 4677788888877765 558899999999999888777765
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.9e-18 Score=181.65 Aligned_cols=296 Identities=15% Similarity=0.091 Sum_probs=135.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHhcCCHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS---GFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 255 (806)
.|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++++|+
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 33444444444444443333333344444444444444444444444433221111 123344444444444444444
Q ss_pred HHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE---VFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
.+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.......+. ...+..+...+.+.|++++|.+.|++
T Consensus 128 ~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 128 ELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444444432 1223334444444444444444444444444331110000 01223344444555555555555555
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
+.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+. .|+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 55432 11233444455555555556666655555554321111234555555555666666666666555544 2344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHhhcCCCCC
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK---ANKVEVGYLIHSELSRMNKVAS 481 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 481 (806)
..+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++.+.+.++.|+
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 44455555555566666666666555543 3555555555555443 3355555555555555444433
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.1e-14 Score=151.37 Aligned_cols=645 Identities=12% Similarity=-0.003 Sum_probs=319.8
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVV 188 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 188 (806)
.|+++.|..++.+..+. .+.....|..|...|-..|+.++++..+-...-.+ +-|..-|..+.....+.|.+++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 35555555555444442 23344445555555555555555544443332221 11334444444444455555555555
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
|.+..+..+++...+-.-...|-+.|+...|...|.++....++.|..-+..+
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~--------------------------- 282 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL--------------------------- 282 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH---------------------------
Confidence 55555544444444444444444555555555555555444332222211111
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------
Q 047492 269 KLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQ----------- 337 (806)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----------- 337 (806)
...+++.+...++-+.|.+.++......+-..+...++.++..+.+...++.+......+....
T Consensus 283 -----i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 283 -----IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred -----HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 1222333333444444444444443322223333444444444444444444444444433311
Q ss_pred ----------------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 338 ----------------ISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL--SPNGIVYNYLINSLCGDGSTHEAYEV 399 (806)
Q Consensus 338 ----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 399 (806)
+.++... --++-++.+....+...-+.....+..+ .-+...|.-+..+|.+.|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111111 0111222233333333333333333332 22334555555666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc---
Q 047492 400 LKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM--- 476 (806)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 476 (806)
|..+......-+...|-.+..+|...|..+.|.+.++..+... +.+...-..|...+-+.|+.++|.+.+..+..-
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 6665544333345555566666666666666666666655543 333344445555555666666666665554311
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHhHHHHHHHHHc
Q 047492 477 -----NKVASENTYIQLIHGFNKSNRADIAARLLVEMEENG----------------------HKPTRALHRAVIRCLCN 529 (806)
Q Consensus 477 -----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------------~~p~~~~~~~ll~~~~~ 529 (806)
...|+..........+.+.|+.++-+.+..+|+... ..-...+...++.+..+
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 112223333334445555555555444444433211 11111222222222222
Q ss_pred cCCcHHHHHHH------HHhHhhCCCCCh--hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhh
Q 047492 530 METPAKQFLQL------LNMQLSHQETNF--QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRK 601 (806)
Q Consensus 530 ~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~ 601 (806)
.++.......+ .-....+..-+. ..+.-++..+++.+++++|+.+...+......-...--...
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~-------- 667 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKE-------- 667 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHH--------
Confidence 22210000000 000001111111 22455677888999999999998888764322111100000
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch
Q 047492 602 NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN-GM--YPS-MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF 677 (806)
Q Consensus 602 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 677 (806)
.=...+.+++..+++..|...++.|... +. .|. ...|+..++...+.|+-.--...+..+.......+..
T Consensus 668 ------l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~ 741 (895)
T KOG2076|consen 668 ------LQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPP 741 (895)
T ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcc
Confidence 1235667788899999999999999874 22 222 2345555666666665554455555544444333344
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh----------ccccchhhHHHHHHHHHcCCC-CChh
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS----------GCIKVSQDIEGLQKMIEQCFP-LDTY 746 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~-~~~~ 746 (806)
.+.........++.+..|...+-.+....|.++.+--.+.-+|. ++-....++..+.+..+.... .-..
T Consensus 742 l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QE 821 (895)
T KOG2076|consen 742 LALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQE 821 (895)
T ss_pred eeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 44444455668889999999888888777776666555544442 222333456666666554222 1344
Q ss_pred hHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC----CCh--------hhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 747 TYNILLRRLSV-SEIDHACELFNRMRRKGYE----PDQ--------WTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 747 ~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~----p~~--------~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.+-.+.++|.. |-.--|...|++....... |.. ..|| |.-.|.++|+..-|..++++
T Consensus 822 a~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 822 AFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN-LHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh-hhhhhccCCcHHHHHHHHHh
Confidence 55567899999 9999999999998854211 111 1344 66679999999999999875
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.1e-16 Score=173.53 Aligned_cols=434 Identities=12% Similarity=-0.036 Sum_probs=305.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
+......|.+.|++++|+..|++.... .|++..|..+..+|.+.|++++|++.++...+..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445567788899999999999998865 678888999999999999999999999999998877888999999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
|++++|...|......+...+.. ...++.-+........+...++. . +++...+..+. .+...........-
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~---~---~~~~~~~~~~~-~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILET---K---PENLPSVTFVG-NYLQSFRPKPRPAG 279 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhc---C---CCCCCCHHHHH-HHHHHccCCcchhh
Confidence 99999999887665543322222 12222222111112222222221 1 12222222222 22222111111111
Q ss_pred HHhhhhcCCCCCCc-ccHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 047492 294 LKSKNSLEGYVPEV-FRFNFLVSR---LLKENRLMEVFDLFMDMKEGQ-ISP-DGVTMNTVLCFFCKAGMVDVAIELYKS 367 (806)
Q Consensus 294 ~~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 367 (806)
+.... ...++. ..+..+... ....+++++|.+.|++..+.+ ..| +...++.+...+...|++++|...|+.
T Consensus 280 ~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 280 LEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111 111211 111111111 123478999999999998765 223 455678888888899999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047492 368 RSEFGLSPN-GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 368 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (806)
..+. .|+ ...|..+...+...|++++|...|++..+.... +..+|..+...+...|++++|...|++.++.. +.+
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 8875 354 568888889999999999999999999876433 67788889999999999999999999998876 456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA-LHRAVIR 525 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~ 525 (806)
...+..+...+.+.|++++|...++...+..+. +...|+.+...+...|++++|++.|++..+. .|+.. ++..+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~- 508 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVL- 508 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHH-
Confidence 677888889999999999999999998876544 7888999999999999999999999998873 33211 100000
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCC
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
..++..+..+...|++++|.+++++.... .|+...
T Consensus 509 ---------------------------~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~---------------- 543 (615)
T TIGR00990 509 ---------------------------PLINKALALFQWKQDFIEAENLCEKALII--DPECDI---------------- 543 (615)
T ss_pred ---------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH----------------
Confidence 01122222334468999999999998754 455432
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 606 RKLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 606 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
++..+...+.+.|++++|+..|++..+.
T Consensus 544 --a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 --AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4788999999999999999999998763
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=8.7e-17 Score=180.97 Aligned_cols=424 Identities=13% Similarity=0.045 Sum_probs=325.0
Q ss_pred hhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC
Q 047492 85 WAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL 164 (806)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 164 (806)
|+...+..+.++....-.+.+....|+.+.|.+++..... ..+.+...+..+..++.+.|++++|+.+|++..+. .|
T Consensus 4 ~~~~~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P 80 (765)
T PRK10049 4 WLRQALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EP 80 (765)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 4433334566788888889999999999999999999876 23556667899999999999999999999998876 44
Q ss_pred -ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 047492 165 -DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD 243 (806)
Q Consensus 165 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (806)
+...+..+..++...|++++|...++++.+..+.+.. +..+..++...|+.++|...++++.+..+ .+...+..+..
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~ 158 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQ 158 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4566778888899999999999999999999887777 99999999999999999999999998765 35556667888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcch------hhHHHHHHHHH-----HcCCH---HHHHHHHHhhhhcCCCCCCcc-
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLE------KAYDVWLRNLV-----RAGRL---DLALEFLKSKNSLEGYVPEVF- 308 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~- 308 (806)
.+...|..+.|++.++.... .|+. ......++... ..+++ ++|++.++.+.......|+..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 88899999999999987654 2221 11222222222 22234 778888888875433334332
Q ss_pred cHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHH
Q 047492 309 RFN----FLVSRLLKENRLMEVFDLFMDMKEGQIS-PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSP---NGIVY 380 (806)
Q Consensus 309 ~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 380 (806)
.+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..-.. .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1134556779999999999999987632 332 22225678999999999999999987643111 13456
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047492 381 NYLINSLCGDGSTHEAYEVLKNSIDHGL-----------FPGK---KTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 381 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (806)
..+..++.+.|++++|.++++++.+... .|+. ..+..+...+...|+.++|.++++++.... +.+
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n 392 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGN 392 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 6677788999999999999999986531 2332 345567778889999999999999998875 666
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRA 522 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 522 (806)
...+..+...+...|++++|++.+++.....+. +...+..+...+...|++++|..+++++++ ..|+......
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~ 465 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 788999999999999999999999999887754 677778888899999999999999999998 4676554333
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.1e-15 Score=144.53 Aligned_cols=362 Identities=15% Similarity=0.174 Sum_probs=248.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVL 349 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 349 (806)
+..+|.+||.++|+--..+.|.+++++... ...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 445677777777777777777777777665 34467778888887654422 2277889999999999999999999
Q ss_pred HHHHHcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH-HHHHHHHHH----hCCCCC----CHHHHH
Q 047492 350 CFFCKAGMVDV----AIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHE-AYEVLKNSI----DHGLFP----GKKTLS 416 (806)
Q Consensus 350 ~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~~~~p----~~~~~~ 416 (806)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++. .+..+| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56788889999999999999999999998888754 444444443 222322 455677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERN----IKLRD---VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
..+..|.+..+.+.|.++..-+.... +.|+. .-|..+....|.....+.-...|+.|.-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 88888888899999988877654431 22322 246678888889999999999999998877788888889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcC-CCh
Q 047492 490 HGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV-KRP 568 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 568 (806)
++....|.++-.-+++.+++..|..-....-..++.-+++..- .|+...-..+-...+++ -++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~----------------hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL----------------HPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC----------------CCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998766655554444444444331 11111011111111110 111
Q ss_pred HH-HHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHH
Q 047492 569 DL-ARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM----YPSMEC 643 (806)
Q Consensus 569 ~~-a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~ 643 (806)
.+ ....-.+|......|.. .+..+..+.+.|...+|.++|..+.+.+- .|....
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~---------------------l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATS---------------------LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred HHHHHhhHHHHHhccCChhH---------------------HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 11 12223344444444433 67777788889999999999988865432 233344
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQ 673 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (806)
...+++...+.++...|..+++-+...+..
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 456777777788888888888888766543
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=7.2e-16 Score=170.63 Aligned_cols=257 Identities=13% Similarity=0.026 Sum_probs=168.4
Q ss_pred cCChhHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 425 DGKFEQMKDLVIFALERN-I-KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.+++++|.+.|+...+.+ . +.....+..+...+...|++++|...++...+..+. +...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 356667777777766653 1 223345666666667777777777777777665443 4556667777777777777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCC
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSG 582 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 582 (806)
..|++..+. .| .++.+|..+...+...|++++|...|++..+.
T Consensus 386 ~~~~~al~~--~p----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l- 428 (615)
T TIGR00990 386 EDFDKALKL--NS----------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL- 428 (615)
T ss_pred HHHHHHHHh--CC----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 777776552 22 23445666666677777777777777777643
Q ss_pred CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 583 LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVG 662 (806)
Q Consensus 583 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 662 (806)
.|+... .+..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|.+
T Consensus 429 -~P~~~~------------------~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 429 -DPDFIF------------------SHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred -CccCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 454332 2556667777778888888888777663 12245667777777777888888888
Q ss_pred HHHHHHhCCCCCCchhHH------HHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHH
Q 047492 663 VMNHLEGHGRQVTSFIGN------TLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKM 736 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 736 (806)
.++.........+....+ .....+...|++.+|...++++....|.+...+..++..|...|++++|+..|+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 887777654432222111 11112223577778888777777666666667788888888888888888888888
Q ss_pred HHc
Q 047492 737 IEQ 739 (806)
Q Consensus 737 ~~~ 739 (806)
.+.
T Consensus 569 ~~l 571 (615)
T TIGR00990 569 AEL 571 (615)
T ss_pred HHH
Confidence 775
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=4.8e-16 Score=170.98 Aligned_cols=335 Identities=12% Similarity=0.046 Sum_probs=236.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
...++..+.+.|++++|+.+++........ +...+..++.+....|+++.|...++.+....+.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 345567777888888888888888776322 3345555556666788888888888888888887777888888888888
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
|++++|...+++..+..+ .+...+..+...+...|++++|...++.+... . +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE-V-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-C-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 888888888888887643 35567777888888888888888888877654 1 1122223222 346778888888888
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH----HHHHHHHHH
Q 047492 294 LKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV----AIELYKSRS 369 (806)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~ 369 (806)
++.+..... .++...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++ |...|++..
T Consensus 200 ~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 887764211 1233344445567778888888888888877654 2356666777777888888775 678888777
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-H
Q 047492 370 EFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRD-V 448 (806)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 448 (806)
+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+.+.+ |+. .
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 643 334567777788888888888888888887765432 45566667777788888888888888777654 332 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCC
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKV 479 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 479 (806)
.+..+..++...|+.++|...|+...+..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3334456677788888888888877766544
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=3.9e-15 Score=140.95 Aligned_cols=455 Identities=14% Similarity=0.108 Sum_probs=307.4
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHh--cCCcc-hHHHHHHHHHhcCCCCccchHH
Q 047492 129 HQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVE--QGCFD-AVAVVSKQISMRGFENDVTRTI 205 (806)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~-~a~~~~~~~~~~~~~~~~~~~~ 205 (806)
..+.+=|.|+.. ...|..+++.-+|+.|++.|+..+...-..+++..+- +.++- .-.+.|-.|...|-.+..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--
Confidence 344455555554 4568899999999999999888787777777665443 33332 23345556666665566666
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG 285 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (806)
+.|++.+ -+|+... .+..+|..||.++|+--..+.|.+++++-... ..+.+..+||.+|.+-.-..
T Consensus 191 ------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc
Confidence 3454433 3333332 34578999999999999999999999998887 77888888998887655433
Q ss_pred CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH-
Q 047492 286 RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME----VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV- 360 (806)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~- 360 (806)
+ .+++.+|.. ....||..|||+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 257 ~----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 257 G----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3 667777776 6788999999999999999998765 67788899999999999999999999998887644
Q ss_pred HHHHHHHHHh----CCCC----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhc
Q 047492 361 AIELYKSRSE----FGLS----PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHG----LFPG---KKTLSILADALCRD 425 (806)
Q Consensus 361 a~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~ll~~~~~~ 425 (806)
+..++.++.. ..++ .|...|...|..|....+.+-|.++-.-+.... +.|+ ..-|..+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 2222 244567777888888888888888766554211 2232 23466777888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 505 (806)
...+....+++.|+-.-+-|+..+...++++....|.++-.-+++..+...|...+... -++++
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil 475 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEIL 475 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHH
Confidence 89999999999998888888999999999999999999998899888877654322221 23344
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC-c
Q 047492 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL-V 584 (806)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~ 584 (806)
..|......|+...-..+-.+..+......+..+............+...+.++-.+.+.|+.++|.++|..+.+.+- .
T Consensus 476 ~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 476 MLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 444444444432211111111111111112222222222234455667788888889999999999999999865443 3
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM 637 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 637 (806)
|.... ..+...+++.-.+.+....|...++-|...++
T Consensus 556 p~~p~----------------lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPL----------------LNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcc----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 43333 11133566667778888899999888866543
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=9.6e-16 Score=172.57 Aligned_cols=417 Identities=15% Similarity=0.035 Sum_probs=252.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG 391 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 391 (806)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+|++..+.. +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33444555666666666666655411 2233345556666666666666666666655432 223444555555666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
++++|...++++.+.... +.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 666666666666554221 333 5555555666666666666666666553 2333444445555555566666665555
Q ss_pred HHhhcCCCCCH------HHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 472 ELSRMNKVASE------NTYIQLIHGFNKS-----NRA---DIAARLLVEMEEN-GHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 472 ~~~~~~~~~~~------~~~~~li~~~~~~-----~~~---~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
.... .|+. .....++...... +++ ++|+..++.+.+. ...|+... .
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~-------------- 235 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--D-------------- 235 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--H--------------
Confidence 4432 1110 0111111111111 112 3334444443321 11111000 0
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc-cCcchhHHHHHHHHhhhCCCCchhHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV-PQLGSNILMLQSYLKRKNGIPRKLYNTLIVG 615 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 615 (806)
........+..+...|+.++|+..|+++.+.+-. |+.. -..+...
T Consensus 236 --------------~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--------------------~~~la~~ 281 (765)
T PRK10049 236 --------------YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA--------------------QRWVASA 281 (765)
T ss_pred --------------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--------------------HHHHHHH
Confidence 0001111123445678999999999999876421 3321 2235778
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----------CC---chh
Q 047492 616 LCKAMKANLAWGFMREMRHNGMYP---SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ-----------VT---SFI 678 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~---~~~ 678 (806)
|...|++++|+..|+++.+..... .......+..++...|++++|.+.++.+...... |+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987642111 1345666777889999999999999999876421 12 123
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV- 757 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 757 (806)
...+...+...|+.++|...++++....|.+...+..++..+...|+.++|++.++++.+. .|.+...+-.+...+..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHh
Confidence 3455667778999999999999999999999999999999999999999999999999986 24445566666667777
Q ss_pred hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 758 SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
|++++|..+++++... .|+......+-+.+
T Consensus 441 ~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999999975 56655544444433
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=9.5e-16 Score=168.67 Aligned_cols=332 Identities=13% Similarity=0.047 Sum_probs=239.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHH
Q 047492 99 FHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALV 177 (806)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 177 (806)
....+..+.+.|+++.+..+++...... +.+...+..++.+....|+++.|+..|+++... .| +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3445566677888888888888887753 444555666667777788888888888888766 44 4456777777788
Q ss_pred hcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 047492 178 EQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKL 257 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (806)
..|++++|...++.+....+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 88888888888888888777777788888888888888888888888776655433 2333333 346778888888888
Q ss_pred HHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHH----HHHHHHHH
Q 047492 258 LEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLME----VFDLFMDM 333 (806)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m 333 (806)
++.+... ...++...+..+...+...|++++|++.+++..... +.+...+..+...+...|++++ |...|++.
T Consensus 200 ~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 200 ARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 8887664 223334445555677788888888888888877521 2345566677788888888875 78888887
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK- 412 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~- 412 (806)
.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+.+ |+.
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 7753 2356677788888888888888888888877753 2345566777788888888888888888887653 333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
..+..+..++...|+.++|...|+...+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233344567788888888888888877764
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1e-14 Score=160.38 Aligned_cols=444 Identities=11% Similarity=0.023 Sum_probs=315.5
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHH---
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHV--- 171 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~--- 171 (806)
.+......+-...+.|+++.|.+.|++..+..+.-...++ .++..+...|+.++|+..+++.. .|+...+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHH
Confidence 4445555556778999999999999999876333222344 88888999999999999999998 333333333
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 047492 172 LLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRF 251 (806)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (806)
+...+...|++++|+++|+++.+..+.++..+..++..+...++.++|++.++.+..... +...+..++..+...++.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchH
Confidence 345677789999999999999999998888888889999999999999999999987754 445555555555556777
Q ss_pred HHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH--HHHHHHHHh---------c
Q 047492 252 EQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF--NFLVSRLLK---------E 320 (806)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~---------~ 320 (806)
.+|++.++++.+. .+.+...+..+..++.+.|-...|+++...-.. -+.+....+ ...+.-.++ .
T Consensus 186 ~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 186 YDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 6799999999975 344567778889999999999999988776431 111111100 000111111 1
Q ss_pred CC---HHHHHHHHHHHHhC-CCCCC-hh----hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 321 NR---LMEVFDLFMDMKEG-QISPD-GV----TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG 391 (806)
Q Consensus 321 ~~---~~~a~~~~~~m~~~-g~~~~-~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 391 (806)
.+ .+.|+.-++.+... +..|. .. ...-.+-++...|++.++++.|+.+...|.+.-..+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23455555555542 11232 12 222345567788999999999999998776545567888899999999
Q ss_pred ChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCH---HHHHH
Q 047492 392 STHEAYEVLKNSIDHG-----LFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI-----------KLRD---VTYDK 452 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ 452 (806)
+.++|..+++++.... ..++......|..++...+++++|..+++.+.+... .|+. ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999987543 123444467888999999999999999999887321 1222 13445
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMET 532 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 532 (806)
++..+...|++.+|++.++++....+. |......+...+...|.+.+|++.++.... +.|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~---------------- 482 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAPR---------------- 482 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCc----------------
Confidence 677788899999999999999776655 888899999999999999999999966654 3454
Q ss_pred cHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcc
Q 047492 533 PAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLG 588 (806)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 588 (806)
+..+....+.++...+++++|..+.+...+. .|+..
T Consensus 483 ------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 483 ------------------SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred ------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 3333444555556668888888888777743 45543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=4.5e-15 Score=141.40 Aligned_cols=485 Identities=13% Similarity=0.027 Sum_probs=311.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHH
Q 047492 275 DVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF-NFLVSRLLKENRLMEVFDLFMDMKEGQISPD----GVTMNTVL 349 (806)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll 349 (806)
..+..-|.......+|+..++-+.. ...-|+.... -.+-+.+.+.+.+.+|+++++....+-...+ ....+.+-
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivk-nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVK-NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhc-ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3344455556667777777777665 4444443322 2234566777788888888876665422112 22334444
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC------------CHHHHHH
Q 047492 350 CFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP------------GKKTLSI 417 (806)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------~~~~~~~ 417 (806)
-.+.+.|.++.|...|+...+. .|+..+--.|+-++...|+.++..+.|.+|+.-...| +....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 4567788899999888887664 4777665556666667788888888888887543222 2222222
Q ss_pred HHH-----HHHhcCC--hhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 418 LAD-----ALCRDGK--FEQMKDLVIFALERNIKLRDV-TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 418 ll~-----~~~~~g~--~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
-+. -..+.++ .+++.-.-.+++.--+.|+-. -+..-+...-.....+.|..+ --.-.
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------------ei~ka 426 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------------EINKA 426 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---------------hhhHH
Confidence 211 1111111 111111111111111122210 001111111111111111110 01122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCCh
Q 047492 490 HGFNKSNRADIAARLLVEMEENGHKPTRALH-RAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRP 568 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 568 (806)
..|.++|+++.|+++++-+.+..-+.-+..- +...-.|...|+....+..+.........-++.....-.+.....|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 3567889999999988877654322222111 111122233344445555555555554555555544444555668999
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELI 648 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 648 (806)
++|.+.|++.....-.-... .|| +.-.+-..|+.++|+..|-++..- +..+...+..+.
T Consensus 507 dka~~~ykeal~ndasc~ea-------------------lfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qia 565 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEA-------------------LFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIA 565 (840)
T ss_pred HHHHHHHHHHHcCchHHHHH-------------------HHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 99999999988543221111 133 333466789999999999877642 345677788888
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchh
Q 047492 649 KLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
+.|....+...|++++-+.... ++.|+.+...|...|-+.|+...|.+.+.+...-+|.+..+...|...|....-+++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 9999999999999998776443 567888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHhh--hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 729 DIEGLQKMIEQCFPLDTYTYNILLRRLSV--SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
|+.+|+++.- +.|+..-|..+|..|.+ |++.+|+++|++..++ ++-|..++..|++.+...|. .+|.++-+
T Consensus 645 ai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 645 AINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 9999999876 68999999999999988 9999999999999876 77799999999999998886 44555443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=4.5e-14 Score=155.37 Aligned_cols=434 Identities=12% Similarity=-0.001 Sum_probs=321.4
Q ss_pred CCCCchhhhhhhhhhccC-CCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhH
Q 047492 72 KTKDVLSCLKFFDWAGRQ-PHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIA 150 (806)
Q Consensus 72 ~~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 150 (806)
+.++...|+..|+-+.+. |... +..+ .++.+++..|+.+.|...++.... ..+........+...|...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 467778889988877543 3221 1233 777888888999999999999872 2223333333446688889999999
Q ss_pred HHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC
Q 047492 151 LHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 151 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
+++|+++.+. .| ++..+..++..+...++.++|++.++.+....+. ...+..++..+...++..+|.+.++++.+.
T Consensus 122 iely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999887 44 4567777788888999999999999999877654 333455555555567776799999999988
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhH--HHHHHHHHHc---------C---CHHHHHHHHH
Q 047492 230 RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAY--DVWLRNLVRA---------G---RLDLALEFLK 295 (806)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~---------g---~~~~a~~~~~ 295 (806)
.+ .+...+..+...+.+.|-...|.++..+-... +.+...-+ ...+.-.++. . -.+.|+.-++
T Consensus 199 ~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 199 AP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 64 56677788889999999999999888765532 22222111 0011111111 1 2455666666
Q ss_pred hhhhcCCCCCCc-ccH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 296 SKNSLEGYVPEV-FRF----NFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 296 ~~~~~~~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.+....+-.|.. ..| --.+-++...|++.++++.++.|...|.+.-..+-..+..+|...+..++|+.+|+.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 665433433432 222 233467788999999999999999988665567888999999999999999999999866
Q ss_pred CC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCChhHH
Q 047492 371 FG-----LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGL-------------FPGKK-TLSILADALCRDGKFEQM 431 (806)
Q Consensus 371 ~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~~~-~~~~ll~~~~~~g~~~~a 431 (806)
.. ..++......|.-+|...+++++|..+++++.+... .||-. .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 32 223445567899999999999999999999987321 12222 334566778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
++.++.+.... +-|......+.+.+...|.+..|...++......+. +..+....+.++...+++++|..+.+.+.+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~- 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS- 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 99999998876 778899999999999999999999999887766554 777888899999999999999999999887
Q ss_pred CCCCCHHh
Q 047492 512 GHKPTRAL 519 (806)
Q Consensus 512 ~~~p~~~~ 519 (806)
..|+...
T Consensus 513 -~~Pe~~~ 519 (822)
T PRK14574 513 -RSPEDIP 519 (822)
T ss_pred -hCCCchh
Confidence 4566543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=2.4e-12 Score=134.38 Aligned_cols=636 Identities=13% Similarity=0.025 Sum_probs=365.5
Q ss_pred ccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhh
Q 047492 70 GKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDI 149 (806)
Q Consensus 70 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 149 (806)
+..+++...|.+++.=+.++.+ .....|..+..+.-..|+.+.+...+-..-. -.+.|...|..+.....+.|+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHH
Confidence 4456899999999998877643 4678999999999999999888776554444 345577999999999999999999
Q ss_pred HHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc-----chHHHHHHhhccCCHHHHHHHH
Q 047492 150 ALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDV-----TRTIMLKCLCKQKKIDEAVEYF 223 (806)
Q Consensus 150 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~ 223 (806)
|.-.|.+..+. .| +-..+---...|-+.|+...|.+-|.++....+|... .--.+++.+...++.+.|.+.+
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999987 34 3334444566788999999999999999998875432 3445677788888889999999
Q ss_pred HHhHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhH----------------------H----H
Q 047492 224 QQLVSG-RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAY----------------------D----V 276 (806)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------------~----~ 276 (806)
+..... +-..+...++.++..|.+...++.|......+... ...+|..-| . .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 888773 22345678899999999999999999988887763 222222211 0 1
Q ss_pred HHHHHH--HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 047492 277 WLRNLV--RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK 354 (806)
Q Consensus 277 li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 354 (806)
+.-++. +.+...+++.-|..... ....-+...|.-+..++.+.|++.+|+.+|..+......-+...|-.+..+|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n-~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDN-VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111122 22333333333322211 112233455666666777777777777777766665444455566666666777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcC
Q 047492 355 AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI--------DHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~g 426 (806)
.|..+.|.+.|+...... +-+...--.|-..+-+.|+.++|.+.+..+. ..+..|+........+.+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 777777777777666532 1223344445555666677777777766643 1223334444444455555666
Q ss_pred ChhHHHHHHHHHHHCCC-----CC-----------------CHHHHHHHHHHHHhcCChhHHHHHHHHH------hhcCC
Q 047492 427 KFEQMKDLVIFALERNI-----KL-----------------RDVTYDKFISALCKANKVEVGYLIHSEL------SRMNK 478 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~-----~~-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~ 478 (806)
+.++-..+...|+.... -| .......++.+-.+.++.....+-...- ...+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 66654444444433110 00 0001111111111111111111111000 00000
Q ss_pred CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChh---
Q 047492 479 VA-SE-NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQ--- 553 (806)
Q Consensus 479 ~~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 553 (806)
.. +. ..+..++..+++.+++.+|+.+...+.+.. ..-.+..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~----------------------------------~f~~~~~~~k 666 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY----------------------------------IFFQDSEIRK 666 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh----------------------------------hhhccHHHHH
Confidence 00 00 112233344444444444444444443321 1111111
Q ss_pred -hHHHHHHhhhcCCChHHHHHHHHHHHHC-CC--ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 047492 554 -IYNFFIDGAGHVKRPDLARAVYELMQRS-GL--VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFM 629 (806)
Q Consensus 554 -~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 629 (806)
.-...+.+....+++..|...++.|... +. .|.... .|+...+.+.+.++-.-=.+++
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~------------------l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN------------------LWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455666778899999888888753 11 121111 2665555555555433333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh-----------ccccHHHHHHH
Q 047492 630 REMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL-----------KTRDLYEAWIR 698 (806)
Q Consensus 630 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~a~~~ 698 (806)
.........-+...+..........+.+..|...+-...... |+....+..+.... +.-.+..+..+
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333321111112222222233456777888888766665553 44334444333211 11234555666
Q ss_pred HHhhhhccCc--chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-------------hhhHHHHHHHHhh-hcHHH
Q 047492 699 LRGMLINEQS--KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-------------TYTYNILLRRLSV-SEIDH 762 (806)
Q Consensus 699 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~li~~~~~-g~~~~ 762 (806)
+.+..+...+ ...+.-.+..+|-.-|=..-|+.+++++++.. +++ ...||. .-.|-+ |+.+.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~d~~dLrkeAA~NL-~LIY~~SGn~~l 884 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKEDNYDLRKEAAYNL-HLIYKKSGNMQL 884 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccCCcccHHHHHHhhh-hhhhccCCcHHH
Confidence 6555543333 55667788999999999999999999999852 111 234553 346777 99999
Q ss_pred HHHHHHH
Q 047492 763 ACELFNR 769 (806)
Q Consensus 763 A~~~~~~ 769 (806)
|.++++.
T Consensus 885 Arqil~k 891 (895)
T KOG2076|consen 885 ARQILEK 891 (895)
T ss_pred HHHHHHh
Confidence 9888764
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=2.3e-14 Score=148.05 Aligned_cols=586 Identities=14% Similarity=0.041 Sum_probs=293.3
Q ss_pred HHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 047492 118 FLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF 197 (806)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (806)
++..+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.......+...|+.++......++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------C
Confidence 3444555567777777777777777777777666 6666665554555666666666666666655443 3
Q ss_pred CCccchHHHHHHhhccCCHHHHHHHHHHhHh-------CC-----------------CCCCHHhHHHHHHHHHhcCCHHH
Q 047492 198 ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVS-------GR-----------------ECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~-----------------~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
|...||..|..+|...||+..-..+=+.+.. .| .-||. ...+......|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHH
Confidence 5666777777777777766542211111111 11 11111 112223334455555
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC-CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG-RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
+++++..+.......|... +++-+.... .+++-....+... + .|+..+|..++.+-..+|+.+.|..++.+
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~---e-~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLV---E-APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhh---c-CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 5555554443212222111 233333222 2333333333222 2 46677777777777777777777777777
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
|.+.|++.+.+-|-.|+-+ .++...++.+++.|.+.|+.|+..|+...+-.+..+|....+ +.|.. ..
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~sq-~~ 297 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGSQ-LA 297 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccccc-hh
Confidence 7777776666655555544 666666677777777777777777776666665554442111 11111 11
Q ss_pred HHHHHHHHHHHhcC-----Ch-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC--CC
Q 047492 413 KTLSILADALCRDG-----KF-----EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK--VA 480 (806)
Q Consensus 413 ~~~~~ll~~~~~~g-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 480 (806)
..+++-+..-.-.| +. .-....++...-.|+.....+|...+.. ...|.-+...++-..+..... .+
T Consensus 298 hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 298 HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCc
Confidence 11111111111112 00 0111111111112333333344333322 225666666666555532111 11
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHh----HhhC------
Q 047492 481 -SENTYIQLIHGFNKSNRADIAARLLV--EMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNM----QLSH------ 547 (806)
Q Consensus 481 -~~~~~~~li~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~------ 547 (806)
++..|..++.-|.+.-+..-...++. +.... ..+......+.....+... ......+... ....
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~lrk-ns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENLRK-NSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHhCc-chHHHHHhhhhHHHHhcccccchh
Confidence 34445555555544322211111111 11111 0111111111111111111 1111111000 0000
Q ss_pred -CCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHH
Q 047492 548 -QETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAW 626 (806)
Q Consensus 548 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 626 (806)
..+-...-+.++..+...-+..+++..-++.... ..|. .|..||.-++.....+.|.
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~g---------------------~ya~Li~l~~~hdkle~Al 511 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFAG---------------------LYALLIKLMDLHDKLEYAL 511 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh---------------------HHHHHhhhHHHHHHHHHHH
Confidence 1111223455666666666666666444443322 1121 2899999999999999999
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhh
Q 047492 627 GFMREMRHN--GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGM 702 (806)
Q Consensus 627 ~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 702 (806)
.+.++.... .+..|..-+..+.+.+.+.+....+..++.++.+.-..-+ ..+.--++......|+.+.-.+.++-.
T Consensus 512 ~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 512 SFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 999988753 3455777788999999999999999999998876322111 222223333444455554444443333
Q ss_pred hhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh---hcHHHHHHHH
Q 047492 703 LINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV---SEIDHACELF 767 (806)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---g~~~~A~~~~ 767 (806)
. +..-.. | .-++....+.++...|.+..+..... .+|.+..-..+.+.+.+ .+.+++..+-
T Consensus 592 v-slgl~e-t-gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls 655 (1088)
T KOG4318|consen 592 V-SLGLSE-T-GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLS 655 (1088)
T ss_pred H-Hhhhhh-c-ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhc
Confidence 2 111111 1 33455667788888888888877765 56776666666666665 4455554443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.6e-10 Score=116.22 Aligned_cols=608 Identities=12% Similarity=0.003 Sum_probs=387.5
Q ss_pred ChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 047492 111 LTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSK 190 (806)
Q Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (806)
+...|..++.+..+.+ |.++..|-+-.+.=-..|++..|..+..+=.+. +.-+...| +.+ ++....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Lea-iRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEA-IRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHH-HhcCChHHHHHHHH
Confidence 3455667777777643 445556655555555566666665554433222 11122233 222 23344555666666
Q ss_pred HHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcc
Q 047492 191 QISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL 270 (806)
Q Consensus 191 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 270 (806)
...+..+.+...|.-.+ --..+...=.+++++.++.- +.++..|-..+ .....+.|.-++.+..+. ++.+
T Consensus 340 ~Avr~~P~Sv~lW~kA~---dLE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec--cp~s 409 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAA---DLESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQS 409 (913)
T ss_pred HHHHhCCCChhhhhhHH---hhhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh--ccch
Confidence 65555443433332222 22233344456666666543 24455565433 445566677777776653 3333
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCChhhHH
Q 047492 271 EKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD----MKEGQISPDGVTMN 346 (806)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~~~~~~~~ 346 (806)
...| -+|.+..-++.|..++.+..+ .++-+...|.+....=-.+|+.+.+.+++++ +...|+..+...|-
T Consensus 410 ~dLw----lAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 410 MDLW----LALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 3333 445566667788888888763 4555666776666656678888888777764 44568888888887
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFGLSPN--GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR 424 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 424 (806)
.=...|-..|.+-.+..+.+..+..|+.-. ..+|..-.+.|.+.+.++-|..+|....+--. -+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHh
Confidence 777888888888888888888877776533 35788888889999999999999988876532 255667777766677
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 425 DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
.|..+....++.++...- +-....|-....-+-..|++..|..++....+.++. +...|-.-++.-..+.+++.|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 788899999998888763 555667777777788889999999999888887766 788888888989999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc
Q 047492 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 584 (806)
|.+... ..|+...|.--+....-.+. .+++..+++......+.-...|-.+...+-+.++++.|.+.|..-.+ .-
T Consensus 641 lakar~--~sgTeRv~mKs~~~er~ld~-~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~c 715 (913)
T KOG0495|consen 641 LAKARS--ISGTERVWMKSANLERYLDN-VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KC 715 (913)
T ss_pred HHHHhc--cCCcchhhHHHhHHHHHhhh-HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cC
Confidence 988876 45555554333322222222 34555555666666666666777777777777777777766655442 23
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVM 664 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 664 (806)
|+... .|-.|...=-+.|..-.|..+++...-.+ +-+...|-..|+.=.+.|+.+.|..++
T Consensus 716 P~~ip------------------LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 716 PNSIP------------------LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred CCCch------------------HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 44332 25555555556667777777777766543 225566777777777777777777777
Q ss_pred HHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 665 NHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
.+.++. .+.+...+...++..-+.++-.. ..++......|++++-+....|....++++|.+.|++..+.+ +.+
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTk----s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~ 850 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTK----SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN 850 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchH----HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence 666654 33444555555555555444222 233344556777777777777777777777777777777752 333
Q ss_pred hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 745 TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 745 ~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
-.+|.-+..-+.. |.-++-.+++.+....
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456555566666 7666666777666644
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=3.2e-14 Score=146.98 Aligned_cols=253 Identities=14% Similarity=0.122 Sum_probs=146.4
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-CccchHHHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 152 HLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE-NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 152 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
.++-.+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...| +...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 99999888776 6679999999999999888776
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHhhhC---CCCC-cchh-------------hHHHHHHHHHHcCCHHHH
Q 047492 231 ECVSGFMIGIVVDALCKNSRFEQ---AGKLLEDFKDR---DDVV-KLEK-------------AYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~---~~~~-~~~~-------------~~~~li~~~~~~g~~~~a 290 (806)
.|...+|..|..+|...|+... +.+.+..+... .|+. |... .-...+...+..|-|+.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999765 22211111110 0110 0000 111223333444455555
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 291 LEFLKSKNSLEGYVPEVFRFNFLVSRLLKE-NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
++++..+.......|-.+ +++-+... ..+++-..+.....+ .|++.+|..++++-.-.|+++.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 555544432211111111 12222211 112222222222211 2555555555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047492 370 EFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 426 (806)
+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55555555545444443 4555555555555555555555555555555544433
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=3.1e-09 Score=107.17 Aligned_cols=618 Identities=9% Similarity=-0.018 Sum_probs=441.4
Q ss_pred CchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHH
Q 047492 75 DVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLF 154 (806)
Q Consensus 75 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 154 (806)
|..+|--++..+....+- .+..+-+-.++=-..|++..|..++..=-+ .++.+..+|-..+ +...++.|..+.
T Consensus 266 DikKaR~llKSvretnP~--hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK--HPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHH----hcCChHHHHHHH
Confidence 455555555555443222 223333333444456777777777665444 4566777775544 445667777777
Q ss_pred HHHhhcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 155 GKMRFQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 155 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
...... -|+++ .|- .+---..+...-..+++..++..+.+...|-..+ ...+.+.|.-++....+.-+ .
T Consensus 339 A~Avr~--~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAveccp-~ 408 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWL---KAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECCP-Q 408 (913)
T ss_pred HHHHHh--CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhcc-c
Confidence 776655 34322 332 2222122333344566666665555555555444 44566678888888776432 3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh---hcCCCCCCcccH
Q 047492 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN---SLEGYVPEVFRF 310 (806)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~ 310 (806)
+...| -+|++..-++.|..+++...+ .++.+...|.+-...--.+|+.+...+++++-. +..|+..+...|
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 33444 356677788999999999887 577788889888888888999988888887643 236777788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEGQISP--DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLC 388 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 388 (806)
-.=...|-..|..-.+..+......-|+.- -..||+.-...|.+.+.++-|..+|....+. ++.+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 887888888899999999998888877654 2457888888999999999999999988774 2445677887777777
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 389 GDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYL 468 (806)
Q Consensus 389 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 468 (806)
..|..++-..+|++....-.+ ....|-.....+-..|+...|..++..+.+.. +.+..+|-.-+..-....+++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 789999999999999876332 44556666666777899999999999988876 5577889999999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHccCCcHHHHHHHHHhHhhC
Q 047492 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL-HRAVIRCLCNMETPAKQFLQLLNMQLSH 547 (806)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 547 (806)
+|..... ..|+...|..-+..---.++.++|++++++..+ .-|+..- |..+-+.+...++ .+.+..........
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~-ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMEN-IEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHH-HHHHHHHHHhcccc
Confidence 9988765 445677777777777778899999999999887 4666544 3333344444443 23333334444555
Q ss_pred CCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHH
Q 047492 548 QETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWG 627 (806)
Q Consensus 548 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 627 (806)
++..+-.|-.+.+.--+.|.+-.|..++++..-.+ |+... .|-..|..=.+.|+.+.|..
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~------------------lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNAL------------------LWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcch------------------hHHHHHHHHHHcCCHHHHHH
Confidence 66667778888888888899999999999987553 44432 48899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccC
Q 047492 628 FMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 628 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
++.+.++. ++.+...|..-|....+.++-....+.+++. ..|+.+.-.+...+....+++.|..-|.++....+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88887764 5667778888888888888877777766665 34555666677778888999999999999999999
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHH
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNIL 751 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 751 (806)
..-.+|-.+...+..+|.-++-.+++...... .|. -..|.+.
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 88899999999999999888778888777664 333 3445443
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=4.1e-12 Score=121.54 Aligned_cols=483 Identities=10% Similarity=0.041 Sum_probs=258.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHH-HHHHHHhcCCcchHHHHHHHHHhcCCC-Ccc----ch
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHV-LLNALVEQGCFDAVAVVSKQISMRGFE-NDV----TR 203 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~ 203 (806)
+..+...|..-|.......+|+..|+-+.+....|+.-.... +-..+.+.+.+.+|+++|+..+..-+. +.. ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 334444556667777888888888888877766666543322 234456777888899999888776542 222 44
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----------Ccchh
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDV-----------VKLEK 272 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~ 272 (806)
+.+.-.+.+.|.++.|..-|+...+.. |+..+-..|+-++...|+.++..+.|..|....+. .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 555556778899999999998887755 45444334444555678888888888888765221 12222
Q ss_pred hHHHHHH-----HHHHcC--CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 047492 273 AYDVWLR-----NLVRAG--RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTM 345 (806)
Q Consensus 273 ~~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 345 (806)
..+..|+ .+-+.+ +.++++-.--++.. .-+.||-.. | .+-+++.++.-....+..|..
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~-----------g-~dwcle~lk~s~~~~la~dle-- 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAA-----------G-CDWCLESLKASQHAELAIDLE-- 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhc-----------c-cHHHHHHHHHhhhhhhhhhhh--
Confidence 2222111 111111 11111111111110 111111100 0 011111111110000000000
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHc-CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN-SLCG-DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
..-..-|.+.|+++.|.++++-+.+..-+.-...-+.|-. -|.+ ..++..|.++-+......- -+......--....
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceee
Confidence 0111235677788888777776665332222222222221 1222 3356666666555443211 12221111112223
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAAR 503 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 503 (806)
..|++++|.+.+++.+...-......||. --.+-+.|++++|+..|-.+...-. .+......+...|....+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHH
Confidence 45777888888877766543333333332 2245567778888777766543211 155566667777777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC
Q 047492 504 LLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 504 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 583 (806)
++-+.... +.-|+....-+...|-+.|+. .+++...-..-.-.+.+..+...+...|....-+++++..|++.. =+
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdk-sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--li 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDK-SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccch-hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence 77655431 333444455555555555553 333333222233456677777777777777777788888877765 45
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL-CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKN 656 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 656 (806)
.|+... |..++..| .+.|++.+|..+|+..... ++-|..++..|++.+...|.
T Consensus 656 qp~~~k-------------------wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSK-------------------WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHH-------------------HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 677665 66665554 4477888888888776653 56677777777777776663
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.8e-11 Score=114.41 Aligned_cols=217 Identities=9% Similarity=0.036 Sum_probs=173.1
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-S 640 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~ 640 (806)
+.-.|+...|..-|+..++....++. .|--+...|....+.++.++.|++... +.| +
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~--------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n 393 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS--------------------LYIKRAAAYADENQSEKMWKDFNKAED--LDPEN 393 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch--------------------HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCC
Confidence 34468888899999998865433332 266778889999999999999999987 444 5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
+.+|.+-.+.+.-.+++++|..-|++.....+ -+.+.|-.+..+.++.+.+.++...|++....+|.-+.+++-...++
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 66788888888889999999999999987653 34566667777788999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHcCCCCC-------hhhHHHHHHHHhh--hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhc
Q 047492 721 SGCIKVSQDIEGLQKMIEQCFPLD-------TYTYNILLRRLSV--SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYN 791 (806)
Q Consensus 721 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 791 (806)
..+++++.|++.|+.+.+. .|+ ...+-.=.-...+ +++..|.+++.+..+...+ ....+.+|...-.+
T Consensus 473 tDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQ 549 (606)
T ss_pred hhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHH
Confidence 9999999999999999985 333 2222111112223 8999999999998876433 44678889999999
Q ss_pred cCCHHHHHHHHHh
Q 047492 792 CLRTDEAERRLEE 804 (806)
Q Consensus 792 ~g~~~eA~~~l~~ 804 (806)
.|+.+||+++|++
T Consensus 550 ~~~i~eAielFEk 562 (606)
T KOG0547|consen 550 RGKIDEAIELFEK 562 (606)
T ss_pred HhhHHHHHHHHHH
Confidence 9999999999986
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.7e-08 Score=98.07 Aligned_cols=432 Identities=11% Similarity=0.037 Sum_probs=256.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc-ccHHHH
Q 047492 235 GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV-FRFNFL 313 (806)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 313 (806)
...|-.....=...+++..|..+|++.... -..+...|...+..-.++..+..|..++++... +-|.+ ..|-..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY 147 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHH
Confidence 344444444444567778888888887764 355666777778888888888888888887753 23332 234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 314 VSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGST 393 (806)
Q Consensus 314 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 393 (806)
+..=-..|++..|.++|+...+ ..||...|++.|+.=.+-..++.|..+|+...- +.|++.+|-....--.++|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH
Confidence 4444567888888899888776 468888999998888888889999999988775 458888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 047492 394 HEAYEVLKNSIDHGLFPGKKTLSILADAL----CRDGKFEQMKDLVIFALERNIKLR--DVTYDKFISALCKANKVEVGY 467 (806)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~ 467 (806)
..|..+|....+. ..|...-..++.++ .++..++.|.-+|+-.++.- +.+ ...|..+...=-+-|+.....
T Consensus 224 ~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 224 ALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhH
Confidence 8888888887753 11333333333333 45567888888888877753 222 334444444434445544333
Q ss_pred HH--------HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHHc---
Q 047492 468 LI--------HSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA-------LHRAVIRCLCN--- 529 (806)
Q Consensus 468 ~~--------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~--- 529 (806)
.. ++.+...++. |-.+|-..++.-...|+.+...++|++.+.+ ++|-.. .|.=+=.+|..
T Consensus 301 d~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4555555555 7788888888888899999999999999875 555221 11111111111
Q ss_pred cCCcHHHHHHHHHhHhhCCCCChhhHHHHH----HhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCC
Q 047492 530 METPAKQFLQLLNMQLSHQETNFQIYNFFI----DGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
..+ ........+.....++....++.-+= ..-.++.+...|.+++.... |..|...+
T Consensus 379 ~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~Kl---------------- 439 (677)
T KOG1915|consen 379 AED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKL---------------- 439 (677)
T ss_pred hhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhH----------------
Confidence 111 12222333333344444444433322 22234455555555555555 44454443
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCchhHHHHH
Q 047492 606 RKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR-QVTSFIGNTLL 683 (806)
Q Consensus 606 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~ 683 (806)
|...|..=.+.+++|....++.+.++ ..| |..+|......=...|+.+.|..+|+-...... ......+...+
T Consensus 440 ---Fk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 440 ---FKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 55555555556666666666666665 233 344455444444456666666666665554321 22222333333
Q ss_pred HHhhccccHHHHHHHHHhhhh
Q 047492 684 LHALKTRDLYEAWIRLRGMLI 704 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~ 704 (806)
+--...|..+.|..++++.+.
T Consensus 515 dFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHH
Confidence 333345555555555555543
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.1e-09 Score=101.05 Aligned_cols=431 Identities=11% Similarity=0.029 Sum_probs=221.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
.+++..|..+|+..+.....+...|.-.+..=.++..+..|..+++..+..-+..| ..|-..+.+=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHH
Confidence 34444555555555544444444444445555555555555555555444322222 22222333333344555555555
Q ss_pred HHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047492 259 EDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI 338 (806)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 338 (806)
++.. ...|+...|.+.|+.-.+.. .++.|..+++..+- +
T Consensus 165 erW~---~w~P~eqaW~sfI~fElRyk------------------------------------eieraR~IYerfV~--~ 203 (677)
T KOG1915|consen 165 ERWM---EWEPDEQAWLSFIKFELRYK------------------------------------EIERARSIYERFVL--V 203 (677)
T ss_pred HHHH---cCCCcHHHHHHHHHHHHHhh------------------------------------HHHHHHHHHHHHhe--e
Confidence 5444 22444444444444444444 44445444444443 2
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHH
Q 047492 339 SPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF-GL-SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPG-KKTL 415 (806)
Q Consensus 339 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~ 415 (806)
.|+..+|--....=.+.|.+..+..+|....+. |- ..+...+.++..--.++..++.|.-+|+-.+++-.+-. ...|
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~ 283 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELY 283 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 244444444444444444444444444443331 00 01111222222222233444444444444443311100 1122
Q ss_pred HHHHHHHHhcCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHHH
Q 047492 416 SILADALCRDGKFEQMKDL--------VIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE-NTYI 486 (806)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 486 (806)
..+..-=-+-|+.....+. ++.+++.+ +.|-.+|-..++.-...|+.+...++|+.....-++.+. ..|.
T Consensus 284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 2222222222332222221 22333333 445556666666666666666666666666543222111 1122
Q ss_pred HHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH----ccCCcHHHHHHHHHhHhhCCCCChhh
Q 047492 487 QLIHG--------FNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC----NMETPAKQFLQLLNMQLSHQETNFQI 554 (806)
Q Consensus 487 ~li~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (806)
..|.. =....+.+.+.++|+..++- ++-...||.-+=-.++ +..+ ...+...+.. .-|..|...+
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~-l~~ARkiLG~-AIG~cPK~Kl 439 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLN-LTGARKILGN-AIGKCPKDKL 439 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcc-cHHHHHHHHH-HhccCCchhH
Confidence 22221 12356777788888887772 3334445543322222 1112 2333333333 3455677888
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+...|..-.+.++++.+..+|++..+. .|.... +|.-....=...|+.+.|..+|.-.++
T Consensus 440 Fk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~------------------~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 440 FKGYIELELQLREFDRCRKLYEKFLEF--SPENCY------------------AWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhH------------------HHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 888888888999999999999999965 454432 376666666778999999999999887
Q ss_pred C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 047492 635 N-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT 675 (806)
Q Consensus 635 ~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 675 (806)
. .+......|.+.|+-=...|.++.|..+++.+++......
T Consensus 500 qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 500 QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 4 2333455677777777789999999999999998754443
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.7e-10 Score=111.34 Aligned_cols=280 Identities=14% Similarity=0.049 Sum_probs=223.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHH
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFID 560 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
+........+-+...+++.+..+++++..+. ..+....+..-|.++...++ ...+..+-+......+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~-~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGK-SNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcc-cchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 5556666677788889999999999998874 34555556666777777777 577777777778888999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCC
Q 047492 561 GAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN--GMY 638 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~ 638 (806)
-|...|+..+|.+.|.+.. .+.|.... .|-.....|+-.|..+.|+..+...-+. |..
T Consensus 321 YYl~i~k~seARry~SKat--~lD~~fgp------------------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT--TLDPTFGP------------------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh--hcCccccH------------------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999987 44555443 4888899999999999999988877662 211
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhh-------ccCcchh
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLI-------NEQSKIS 711 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~ 711 (806)
-+..| +.--|.+.++.+.|.++|.+..... +.|+.+.+.+.-..+..+.+.+|.+.|+.... ..+....
T Consensus 381 -lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 381 -LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred -chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 12223 3334788999999999999987653 56788889998888999999999999999872 1223556
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
+++.|..+|.++++.++|+..+++.+.. .+.|..++.++.-.|.. |+++.|++.|.+.. .++||..+...++..+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 7899999999999999999999999997 57889999999999999 99999999999876 5788886666555433
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.7e-13 Score=135.91 Aligned_cols=260 Identities=15% Similarity=0.077 Sum_probs=114.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 566 (806)
.+...+.+.|++++|++++++.......|+ ++..|..+.......+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~----------------------------------~~~~~~~~a~La~~~~ 58 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPD----------------------------------DPEYWRLLADLAWSLG 58 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc----------------------------------cccccccccccccccc
Confidence 457778888999999999866544321233 3344555555666778
Q ss_pred ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047492 567 RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEE 646 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (806)
+.+.|...++++...+.. +.. .+..++.. ...+++++|.+++....+. .++...+..
T Consensus 59 ~~~~A~~ay~~l~~~~~~-~~~-------------------~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~ 115 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-NPQ-------------------DYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-ccc-------------------cccccccc-ccccccccccccccccccc--ccccchhhH
Confidence 999999999999865422 121 26666666 6899999999998877664 356666778
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCC-CCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhcccc
Q 047492 647 LIKLLCSTKNYDMVVGVMNHLEGHG-RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIK 725 (806)
Q Consensus 647 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 725 (806)
++..+.+.|+++++.++++.+.... .+.+...+..+...+.+.|+.++|.+.++++....|.+..+.+.++..+...|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 8888999999999999999987543 245667777888888899999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 726 VSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 726 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.+++.++++...+. .+.|...|..+..+|.. |++++|+..|++.... -+.|..+...+..++.+.|+.++|.++.++
T Consensus 196 ~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 196 YDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999999988887 36778888999999999 9999999999998875 233777888899999999999999998775
Q ss_pred h
Q 047492 805 M 805 (806)
Q Consensus 805 m 805 (806)
.
T Consensus 274 ~ 274 (280)
T PF13429_consen 274 A 274 (280)
T ss_dssp -
T ss_pred c
Confidence 4
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=5.2e-11 Score=123.59 Aligned_cols=281 Identities=10% Similarity=-0.006 Sum_probs=135.4
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHH-HHHHHhcCChhhHHHHHHHHhhcCCCCChhhHH--HHHHHHHhcCCcchH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTL-VMGYALAGKPDIALHLFGKMRFQGMDLDDYAYH--VLLNALVEQGCFDAV 185 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a 185 (806)
.|+++.|.+.+..-..... ++..+..+ ..+..+.|+++.|...|+++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4666666666665444311 12222222 22335566666666666666554 44433222 223445556666666
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHH
Q 047492 186 AVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSG-------FMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
...++.+.+..+.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666666666556666666666666666666666666666655443211 11222222222233334444444
Q ss_pred HHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047492 259 EDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI 338 (806)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 338 (806)
+.+... .+ .+......+...+...|+.++|.+++++..+.
T Consensus 253 ~~lp~~--~~------------------------------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-- 292 (398)
T PRK10747 253 KNQSRK--TR------------------------------------HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-- 292 (398)
T ss_pred HhCCHH--Hh------------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 443321 12 23334444445555555555555555544442
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 339 SPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSIL 418 (806)
Q Consensus 339 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (806)
.||... .++.+....++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+
T Consensus 293 ~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 293 QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 222211 11222223355555555555544432 223334444555555555555555555555543 3555555555
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 047492 419 ADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~ 438 (806)
...+.+.|+.++|.+++++.
T Consensus 368 a~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555544
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=8.9e-12 Score=126.10 Aligned_cols=287 Identities=10% Similarity=-0.002 Sum_probs=220.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHccCCcHHHHHH
Q 047492 462 KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENG--HKPTRALHRAVIRCLCNMETPAKQFLQ 539 (806)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~ 539 (806)
+..+|...|..+...... .......+.++|...+++++|.++|+.+.+.. ..-+..+|.++++.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345677777664433222 33455667777888888888888888777631 122455677777665432 22333
Q ss_pred HHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhc
Q 047492 540 LLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKA 619 (806)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 619 (806)
+.+......+..+.+|+++.+.|.-.++.+.|++.|++.. .+.|+.. .+|+.+..-+...
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAi--Qldp~fa------------------YayTLlGhE~~~~ 468 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAI--QLDPRFA------------------YAYTLLGHESIAT 468 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhh--ccCCccc------------------hhhhhcCChhhhh
Confidence 3444556677889999999999999999999999999998 4567543 2477777888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHH
Q 047492 620 MKANLAWGFMREMRHNGMYPSMECY---EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAW 696 (806)
Q Consensus 620 ~~~~~A~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 696 (806)
..+|.|...|+..+. .|...| .-+.-.|.+.++++.|.-.|++..+.++.. ..+...+...+-+.|+.++|+
T Consensus 469 ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-SVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred HHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-hhHHhhhhHHHHHhhhhhHHH
Confidence 999999999998864 344444 446667889999999999999998877543 344555667788999999999
Q ss_pred HHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCC
Q 047492 697 IRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGY 775 (806)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~ 775 (806)
++++++....+.++......+..+...++.++|+..++++++. ++-+...+..+...|.+ |+.+.|+.-|.-+.+...
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 9999999999999999999999999999999999999999996 56667778888889988 999999999999988766
Q ss_pred CCCh
Q 047492 776 EPDQ 779 (806)
Q Consensus 776 ~p~~ 779 (806)
++..
T Consensus 623 kg~~ 626 (638)
T KOG1126|consen 623 KGAQ 626 (638)
T ss_pred ccch
Confidence 6555
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=4.8e-11 Score=124.69 Aligned_cols=133 Identities=10% Similarity=-0.033 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhH-HHHHHHhhccccHHHHHHHHHhhhhccCcch--hhHHH
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIG-NTLLLHALKTRDLYEAWIRLRGMLINEQSKI--SLLGQ 715 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 715 (806)
.+...+..+...+...|+.++|.+++++..+.........+ .......+..++...+.+.++...+..|.++ ....+
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 36777778888888888888888888888876544332211 1111122344666777777777777777777 66777
Q ss_pred HHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 716 LIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 716 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
+...+.+.|++++|.+.|+........|+...+..+...+.+ |+.++|.++|++-.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777778888888888743333246777777777777777 88888877777643
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2e-10 Score=111.57 Aligned_cols=416 Identities=12% Similarity=0.014 Sum_probs=264.6
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH
Q 047492 138 VMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI 216 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 216 (806)
..-|-++|++++|++.|.+.... .|| +.-|.....+|...|+|+++.+.....++..+.-..++..-.+++-..|++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 34567889999999999999877 777 777888888888999999999998888887766666777777888888888
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH---------hh-hCCCCCcchhhHHHHHHHHHHcCC
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLED---------FK-DRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------~~-~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
++|+.=. +-..+..++....-...+.+++.. +. .+..+.|+.....+....+...-
T Consensus 200 ~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 200 DEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP- 265 (606)
T ss_pred HHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc-
Confidence 8876422 222233333332222223333322 22 12234555444443333321100
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh--c---CCHHHHHHHHHHHHhC-CCCC-----C------hhhHHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK--E---NRLMEVFDLFMDMKEG-QISP-----D------GVTMNTVL 349 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~-g~~~-----~------~~~~~~ll 349 (806)
......+.......+..++.. . ..+..+...+.+-... ...+ | ..+...-.
T Consensus 266 ------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 ------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 000000111111122211111 0 1223333332221110 0011 1 11111112
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 350 CFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFE 429 (806)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 429 (806)
..+.-.|+.-.|..-|+..++....++ ..|--+...|....+.++.++.|++..+-+.. |+.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 223456888899999999887543222 23777778899999999999999999877654 6667777777777778999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 430 QMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
+|..=|++.++.. +-+...|..+.-+.-+.+++++++..|++..++-+. -+..|+.....+...+++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999988765 445566777777777899999999999999987655 78899999999999999999999999998
Q ss_pred HCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcch
Q 047492 510 ENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGS 589 (806)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 589 (806)
+ +.|+.... ...+-+.+.-.++-.- -.+++..|.+++.+..+. .|....
T Consensus 490 ~--LE~~~~~~--------------------------~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~ 538 (606)
T KOG0547|consen 490 E--LEPREHLI--------------------------IVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQ 538 (606)
T ss_pred h--hccccccc--------------------------cccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHH
Confidence 7 44442110 0001111111111111 237889999999999854 443332
Q ss_pred hHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 590 NILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+|..|...-.+.|+.++|+++|++-..
T Consensus 539 ------------------A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 539 ------------------AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ------------------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 488999999999999999999998765
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.8e-13 Score=135.70 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=96.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
.+...+.+.|++++|+++++........| ++..|..+.......++++.|...++++...+..+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666777788888888886544332123 333444444455567788888888888887766666667777766 6778
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
++++|.++++...+.. ++...+..++..+...|+++++.++++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877665543 34455667777788888888888888887655344566677777778888888888888888
Q ss_pred HhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 295 KSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
++..+. .|+ ....+.++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+..
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 877652 343 5567777777888888888777777766643 3456667777788888888888888888876643
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 374 SPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+.|......+..++.+.|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3466777777788888888888888777654
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=1.9e-10 Score=119.42 Aligned_cols=284 Identities=11% Similarity=0.029 Sum_probs=121.3
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
.|+++.|.+......+....+...|.....+..+.|+++.|.+.+.++.+................+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666554443332111112233333333556666666666666654332222122122244555566666666666
Q ss_pred HHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc------ccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 259 EDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV------FRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
+.+.+. .+-+......+...|.+.|+|++|.+++..+.+.....++. .+|..++.......+.+...++++.
T Consensus 177 ~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 665543 12233444555555555555555555555554422221111 1112222222222333333333333
Q ss_pred HHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 333 MKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 333 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
+.+. .+.++.....+...+...|+.++|.+++++..+. .++.... ++.+.+..++.+++.+..+...+.... |.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CH
Confidence 3221 1223444444444555555555555555444432 2222111 122222334444455544444443221 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSE 472 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 472 (806)
..+.++...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444455555544444433 24444444444444444444444444443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.8e-10 Score=120.29 Aligned_cols=288 Identities=11% Similarity=0.006 Sum_probs=154.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChhH
Q 047492 319 KENRLMEVFDLFMDMKEGQISPDGV-TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG--IVYNYLINSLCGDGSTHE 395 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 395 (806)
..|+++.|.+.+.+..+.. |+.. .+-....++.+.|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3455555555555444432 2222 22222344445555555555555544321 222 122223444555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHH
Q 047492 396 AYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYD-KFISAL---CKANKVEVGYLIHS 471 (806)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 471 (806)
|...++.+.+.... +...+..+...+...|+++++.+++..+.+.+.. +...+. .-..++ ...+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555555554322 3444555555555555555555555555555432 222121 111111 11122222222333
Q ss_pred HHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH-HHHHHHH--ccCCcHHHHHHHHHhHh
Q 047492 472 ELSRMNKV---ASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHR-AVIRCLC--NMETPAKQFLQLLNMQL 545 (806)
Q Consensus 472 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~--~~~~~~~~~~~~~~~~~ 545 (806)
.+.+..+. .+...+..+...+...|+.++|.+++++..+. .||..... .++..+. ..++ ........+...
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~~l 326 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPED-NEKLEKLIEKQA 326 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCC-hHHHHHHHHHHH
Confidence 33322221 15556666666666667777777766666653 33332110 0111111 1222 344555555555
Q ss_pred hCCCCCh--hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChH
Q 047492 546 SHQETNF--QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKAN 623 (806)
Q Consensus 546 ~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 623 (806)
...+.|+ ....++...+.+.|++++|.+.|+........|+... +..+...+.+.|+.+
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-------------------~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-------------------LAMAADAFDQAGDKA 387 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-------------------HHHHHHHHHHcCCHH
Confidence 6666677 7788899999999999999999996554455677765 789999999999999
Q ss_pred HHHHHHHHHHh
Q 047492 624 LAWGFMREMRH 634 (806)
Q Consensus 624 ~A~~~~~~m~~ 634 (806)
+|.+++++...
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=1e-07 Score=96.36 Aligned_cols=527 Identities=13% Similarity=0.106 Sum_probs=303.7
Q ss_pred HHHHhCCChhHHHHHHHHhHhc-cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 104 KLLHCAKLTPLMVDFLENYKKD-RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 104 ~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
..+.++++...-...|+..... .+.-...+|...+......+-++-++.+|++..+. ++..-+--|..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 3334444444444444333322 33345567777777777788888999999998865 556678888889999999
Q ss_pred chHHHHHHHHHhcCC-------CCccchHHHHHHhhccCCHH---HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 183 DAVAVVSKQISMRGF-------ENDVTRTIMLKCLCKQKKID---EAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
++|.+.+........ .+...|..+....++.-+.- ....+++.+..+-...-...|++|.+-|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 999998888865532 24446666666655543332 23344444444333334568999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC----------------------CHHHHHHHHHhhhhcCCC-------
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG----------------------RLDLALEFLKSKNSLEGY------- 303 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~~~~~~~~------- 303 (806)
+|..+|++.... ..+...|+.+.+.|+.-. +++-.+.-|+.+.....+
T Consensus 266 karDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 266 KARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999887654 344455566655554321 122233333333321111
Q ss_pred ---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 047492 304 ---VPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD------GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS 374 (806)
Q Consensus 304 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (806)
..++..|..-+. ...|+..+-...+.+..+. +.|- ...|..+.+.|-..|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 011222222221 2345666677777777664 2231 245677788888999999999999988764332
Q ss_pred CC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCChhHHHHH
Q 047492 375 PN---GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLF----------P-------GKKTLSILADALCRDGKFEQMKDL 434 (806)
Q Consensus 375 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~ 434 (806)
-- ..+|-.-...=.+..+++.|++++++...---. | +...|...++.-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 235555556667788889999988876532111 1 123455556666667888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047492 435 VIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE-NTYIQLIHGFNK---SNRADIAARLLVEMEE 510 (806)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~~~~~~a~~~~~~m~~ 510 (806)
++++.+..+. ++.+.......+-...-++++.++++.-...-..|+. ..|+..+.-+.+ ...++.|..+|++..+
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888887643 2222222233344555678888888776665555544 356766666554 3457889999999888
Q ss_pred CCCCCCHHhHHHHHHHHHc-cCCcHHHHHHHHHhHhhCCCCCh--hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCc
Q 047492 511 NGHKPTRALHRAVIRCLCN-METPAKQFLQLLNMQLSHQETNF--QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQL 587 (806)
Q Consensus 511 ~~~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 587 (806)
|.+|...-+..++.+-.. .-.....+...++......++.. ..||..|.--+..=.+.....+|++.++. -|+.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~ 655 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDS 655 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChH
Confidence 666655444333333211 11112333333444333333322 23666665444433344455666666643 4444
Q ss_pred chhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHH
Q 047492 588 GSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMV 660 (806)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A 660 (806)
..-.. .--....=++.|..+.|..++..--+- ..+.+...|.+.=.-=.+.|+-+..
T Consensus 656 ~~r~m----------------clrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 656 KAREM----------------CLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred HHHHH----------------HHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHH
Confidence 32110 111222334567777777777655442 2333555666665555667774333
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-08 Score=99.28 Aligned_cols=330 Identities=11% Similarity=-0.017 Sum_probs=233.3
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH--hHHH
Q 047492 163 DLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF--MIGI 240 (806)
Q Consensus 163 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 240 (806)
.-|..-+-..--.+.+.|..+.|+..|......-|-.-.+|..|..... +.+.+ ..... +...+.. .--.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHHHHH
Confidence 3344433333334456777788888887777654444445544443332 22222 22221 1111111 1122
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCC-CcccHHHHHHHHHh
Q 047492 241 VVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVP-EVFRFNFLVSRLLK 319 (806)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 319 (806)
+..++....+.+++.+-.+..... |.+-+...-+....+.....++++|+.+|+++........ |..+|..++-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 345566666778888777777776 6665555555555566678899999999999986433332 46777777643322
Q ss_pred cCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 320 ENRLM-EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 320 ~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
..++. .|..+++ . -+--+.|..++.+-|.-.++.++|...|++..+.+ +.....|+.+..-|...++...|++
T Consensus 312 ~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22221 1333222 1 12345788888899999999999999999998854 3345688888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 047492 399 VLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK 478 (806)
Q Consensus 399 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 478 (806)
-++...+-... |-..|-.|.++|.-.+.+.-|.-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|......+-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999987654 88899999999999999999999999988875 67888999999999999999999999999887765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 479 VASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 479 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
. +...+..|.+.|-+.++..+|...|++-++
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 668899999999999999999999988765
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.2e-09 Score=100.47 Aligned_cols=366 Identities=10% Similarity=0.015 Sum_probs=256.6
Q ss_pred cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc---c
Q 047492 126 RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDV---T 202 (806)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 202 (806)
+...|...+-.....+.+.|....|+..|...... -+..|.+-+....-..+.+.+ ..+.. +.+... .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHH
Confidence 44556555555556677788999999999888754 234555544443322222222 22221 222211 1
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc-chhhHHHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK-LEKAYDVWLRNL 281 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~ 281 (806)
=--+..++-.....+++.+=.+...+.|.+.+...-+....+.....++++|+.+|+++...+.... |..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234455666667888888888888888866666666666677788999999999999987633332 345676665333
Q ss_pred HHcCCHH-HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH
Q 047492 282 VRAGRLD-LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV 360 (806)
Q Consensus 282 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 360 (806)
-.+.++. -|..+++ + . +-...|..++.+.|+-.++.++|...|+...+.+. -....|+.+.+-|....+...
T Consensus 310 ~~~skLs~LA~~v~~-i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-I---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hhhHHHHHHHHHHHH-h---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHH
Confidence 2222221 1222222 1 2 23356777888889999999999999999988653 245667777788999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047492 361 AIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALE 440 (806)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (806)
|.+-|+...+-. +.|-..|-.|.++|.-.+...-|+-.|++..+-... |...|.+|.++|.+.++.++|++.|+....
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988854 567889999999999999999999999998876443 788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 441 RNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM----NKVAS--ENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 441 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.| ..+...+..|.+.|-+.++.++|...|+...+. |...+ ...---|..-+.+.+++++|..+......
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77 557788999999999999999999888876652 22212 12223355667788888888877666544
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=3.2e-10 Score=108.00 Aligned_cols=207 Identities=11% Similarity=0.042 Sum_probs=147.8
Q ss_pred hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 047492 553 QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREM 632 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 632 (806)
.+.....++|.+.|++..+..++.++.+.+.-.+...-- + ...+|+.+++-+...+..+.-...|+..
T Consensus 188 ~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--l----------e~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 188 EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--L----------EQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH--H----------HHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 334444444555555555555555555444433222100 0 0013777777776666666656666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhh
Q 047492 633 RHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 633 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 712 (806)
..+ .+.++..-.+++.-+.+.|+.++|.+++++..+.+.++... ......+-++...-.+..+......|.++..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 543 55566777788888999999999999999999998877621 2234557788888888888888888888899
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC
Q 047492 713 LGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD 778 (806)
Q Consensus 713 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~ 778 (806)
+.+|...|.+++.+.+|...|+...+. .|+..+|+-+.+++.+ |+.++|.+++++-...-..|+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988874 7999999999999999 999999999888775434443
No 53
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=9.5e-07 Score=93.92 Aligned_cols=668 Identities=13% Similarity=0.088 Sum_probs=356.6
Q ss_pred cCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChh
Q 047492 88 RQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDY 167 (806)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 167 (806)
.+.+.+-....|-.....|...|+++.|.++-..-++ |+-.++.|.+.+=..=...|.+.--+..|..+...| +.|..
T Consensus 352 ~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ 429 (1666)
T KOG0985|consen 352 VRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKY 429 (1666)
T ss_pred hhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHH
Confidence 3344444566777778888889999999888877766 677788887777666667788888888888888776 33332
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH-----hcCC---CCc-----------cchHHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQIS-----MRGF---END-----------VTRTIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~---~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
----+.+.-...|+.+....++.+=+ +.|- |.. ...+.++.+|+..|.++++.-+.. +
T Consensus 430 ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---K 506 (1666)
T KOG0985|consen 430 ETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---K 506 (1666)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---H
Confidence 22223333334444444444332211 1110 100 122344455555555555444333 3
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcc
Q 047492 229 GRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVF 308 (806)
Q Consensus 229 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (806)
.|..||. -.++....+ -.++.+.++...|.+..+ ....++.+.+.+...+....+..++-... .+..|+..
T Consensus 507 vGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaL--K~~~Pd~g 577 (1666)
T KOG0985|consen 507 VGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDAL--KLNSPDEG 577 (1666)
T ss_pred cCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHh--cCCChhhh
Confidence 3666663 334444444 567777777777765412 23345666666667777777777666665 34556654
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH----HH
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY----LI 384 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----li 384 (806)
...+-+--..-.+-. ++-+.+..++.- ...-+..+...|.+.|-...|++.|.++.+- +...+.-+. -+
T Consensus 578 ~LQTrLLE~NL~~aP----qVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 578 HLQTRLLEMNLVHAP----QVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWL 650 (1666)
T ss_pred hHHHHHHHHHhccch----HHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHH
Confidence 433322111112222 222223333322 2233667778888999999999888776541 111111111 12
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----------CCCCCHHHHHHH
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER-----------NIKLRDVTYDKF 453 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l 453 (806)
-.|.-.-.++++.+.++.|...+++-|..+...+..-|+..=..+...++|+..... ++.-|+.+.-..
T Consensus 651 v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KY 730 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKY 730 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHH
Confidence 334445568889999999998888878777777777776665566666666664332 345566666678
Q ss_pred HHHHHhcCChhHHHHHHHHH------------hhc---CCCC-----CHHHHH-------------HHHHHHHhcCCHHH
Q 047492 454 ISALCKANKVEVGYLIHSEL------------SRM---NKVA-----SENTYI-------------QLIHGFNKSNRADI 500 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~------------~~~---~~~~-----~~~~~~-------------~li~~~~~~~~~~~ 500 (806)
|.+.|+.|++.+.+++.++- .+. +-.| |..-+- ..|..|.+.=++.+
T Consensus 731 IqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~ 810 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR 810 (1666)
T ss_pred HHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc
Confidence 88999999988888775432 111 1111 111111 12223332222222
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHH-------------HHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCC
Q 047492 501 AARLLVEMEENGHKPTRALHRAVIRC-------------LCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKR 567 (806)
Q Consensus 501 a~~~~~~m~~~~~~p~~~~~~~ll~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 567 (806)
.-.+...+.+ +.-+......+|.. +.+.++ .+-+..+++........|+.++|++...|...++
T Consensus 811 ~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNR-LklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 811 TPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNR-LKLLLPWLESLIQEGSQDPATHNALAKIYIDSNN 887 (1666)
T ss_pred cchhhhhhhc--CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhh-HHHHHHHHHHHHhccCcchHHHhhhhheeecCCC
Confidence 2222111111 11111111122211 111222 2334445666677778899999999999987654
Q ss_pred hHHH-HH---HHH-----H-HHHCCCccCc---------------------chhHHHHHHHHhhh---------------
Q 047492 568 PDLA-RA---VYE-----L-MQRSGLVPQL---------------------GSNILMLQSYLKRK--------------- 601 (806)
Q Consensus 568 ~~~a-~~---~~~-----~-m~~~~~~p~~---------------------~~~~~~~~~~~~~~--------------- 601 (806)
-.+- ++ .|+ + ..++ .|-. ..+......+.++.
T Consensus 888 nPE~fLkeN~yYDs~vVGkYCEKR--DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~ 965 (1666)
T KOG0985|consen 888 NPERFLKENPYYDSKVVGKYCEKR--DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPY 965 (1666)
T ss_pred ChHHhcccCCcchhhHHhhhhccc--CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChH
Confidence 3332 11 111 1 1111 0100 00000000011100
Q ss_pred --------------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHH-----------------
Q 047492 602 --------------NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGM--YPSMECYEELI----------------- 648 (806)
Q Consensus 602 --------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~----------------- 648 (806)
...|+.-.+..+.++...+-+.+-+++++++.-.+- .-+...-+.++
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~r 1045 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHH
Confidence 234555566667777777777777777777663211 00111111111
Q ss_pred ----------HHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHH
Q 047492 649 ----------KLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIG 718 (806)
Q Consensus 649 ----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 718 (806)
..+...+-+++|..+|++.. .+....+.|+. .-+.++.|.++.++. ..+.+|..+..
T Consensus 1046 LdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~-----n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAK 1112 (1666)
T ss_pred hccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHH
Confidence 11122233344444443321 11111122211 123334443333333 45567888888
Q ss_pred hhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHH
Q 047492 719 VFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDE 797 (806)
Q Consensus 719 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 797 (806)
+-...|...+|++-|-++ .|+..|.-.+..+.+ |.|++-...+...+.+.-+|...+ .|+.||.+.|++.|
T Consensus 1113 AQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHH
Confidence 888888888777755432 467888889999998 999998888877777666666544 56778888888887
Q ss_pred HHHHH
Q 047492 798 AERRL 802 (806)
Q Consensus 798 A~~~l 802 (806)
-.+++
T Consensus 1185 lE~fi 1189 (1666)
T KOG0985|consen 1185 LEEFI 1189 (1666)
T ss_pred HHHHh
Confidence 77665
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.1e-09 Score=101.07 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=171.8
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHhcCCHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS---GFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 255 (806)
+.+.++|.++|-+|.+..+.+..+..+|.+.|.+.|.++.|.++++.+.++.--+. ..+.-.|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34566677777776665544555566666666666666666666666655422111 112233444444555555555
Q ss_pred HHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047492 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKE 335 (806)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (806)
++|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+
T Consensus 128 ~~f~~L~de~--------------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 128 DIFNQLVDEG--------------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHHHhcch--------------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555544421 11123344566677777777777777777776
Q ss_pred CCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 047492 336 GQISPDG----VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG-IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP 410 (806)
Q Consensus 336 ~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 410 (806)
.+-.+.. ..|.-+...+....+++.|..++.+..+.+ |+. ..--.+-+.....|++++|.+.++...+.+..-
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 5543322 123334444445667788888888776643 333 233344566777888888888888888776555
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 411 GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
-..+...|..+|...|+.++...++..+.+....++ .-..+...-....-.+.|...+.+-..+ .|+...+..+|.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~ 323 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 566777788888888888888888888777643333 3333444444444555666555544433 356777777777
Q ss_pred HHHh---cCCHHHHHHHHHHHHHC
Q 047492 491 GFNK---SNRADIAARLLVEMEEN 511 (806)
Q Consensus 491 ~~~~---~~~~~~a~~~~~~m~~~ 511 (806)
.... .|...+-+.+++.|...
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHH
Confidence 6554 34466667777777654
No 55
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.1e-06 Score=93.58 Aligned_cols=646 Identities=13% Similarity=0.084 Sum_probs=328.5
Q ss_pred CCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhc-----cCCcchhHHHHHHHHHHhcCCh
Q 047492 73 TKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKD-----RYYHQVRFNDTLVMGYALAGKP 147 (806)
Q Consensus 73 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~li~~~~~~~~~ 147 (806)
.+.+..-|.+|.-+..+.. .+...--.+.+-....|+.+.....+.+=+-. |.-.-..--+..+..|.+++-+
T Consensus 407 ~Gq~sPLLqYFg~LLdqGk--LNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp 484 (1666)
T KOG0985|consen 407 PGQPSPLLQYFGTLLDQGK--LNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVP 484 (1666)
T ss_pred CCCCCcHHHHHHHHHhccc--ccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCc
Confidence 3444445777776654442 23322233344445556656555554432211 2111111112344555555555
Q ss_pred hhHHHHHHHH----------hhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHH
Q 047492 148 DIALHLFGKM----------RFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKID 217 (806)
Q Consensus 148 ~~A~~~~~~m----------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 217 (806)
.+++..|.+. .+.|..|| |-.+|+.+.+ -..|.+.++...+.+... +..-++.+...+...+...
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~-~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE-PLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC-CcccHHHHHHHHHHHHhhh
Confidence 5555555443 23466776 5556666666 467888888877776544 3445677777777778888
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 218 EAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
.+...+-+..+.+.+--...-+.|+..-.. +-++-|..++ .. + .-+..-+..+.+.|.++|-...|++.+..+
T Consensus 560 q~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~-~aPqVADAIL----gN-~-mFtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 560 QCTSFLLDALKLNSPDEGHLQTRLLEMNLV-HAPQVADAIL----GN-D-MFTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred hhHHHHHHHhcCCChhhhhHHHHHHHHHhc-cchHHHHHHH----hc-c-ccccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 888877777765542223333444433222 2233333322 21 1 122233778888899999999999887766
Q ss_pred hhcCCCCCCcccHHHH-----HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC-
Q 047492 298 NSLEGYVPEVFRFNFL-----VSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF- 371 (806)
Q Consensus 298 ~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 371 (806)
..- +..+ .-+.+ +-.|...-.++++.+.++.|...++..|..+...+..-|+..=..+...++|+..+..
T Consensus 633 ~DI---KR~v-Vhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~e 708 (1666)
T KOG0985|consen 633 YDI---KRVV-VHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYE 708 (1666)
T ss_pred HHH---HHHH-HHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccch
Confidence 431 1111 11111 1234445567888999999998888888777777777777665666666776665432
Q ss_pred ----------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH------------HhCC---------------CCCCHHH
Q 047492 372 ----------GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNS------------IDHG---------------LFPGKKT 414 (806)
Q Consensus 372 ----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------------~~~~---------------~~p~~~~ 414 (806)
++..|..+.-..|.+.|+.|++.+..++-++- .+.. ..+|...
T Consensus 709 GL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl 788 (1666)
T KOG0985|consen 709 GLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL 788 (1666)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH
Confidence 24455666667788889999988877775441 1111 1111111
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------------HHHHHHHHhcCChhHHHHHHHHHhhc
Q 047492 415 L------SILADALCRDGKFEQMKDLVIFALERNIKLRDVTY------------DKFISALCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 415 ~------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~ 476 (806)
| ...|..|.+.=++...-.+...+.+-++.- ..+- .-|+.-.-+.+++..-..+++.....
T Consensus 789 YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E-~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~e 867 (1666)
T KOG0985|consen 789 YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSE-DFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQE 867 (1666)
T ss_pred HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcH-HHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 1 112333333333333222222222222110 1111 12333344455555556667777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-HHHHHH--------HHHHHHHC------------C--------CCCCHHhHHHHHHHH
Q 047492 477 NKVASENTYIQLIHGFNKSNR-ADIAAR--------LLVEMEEN------------G--------HKPTRALHRAVIRCL 527 (806)
Q Consensus 477 ~~~~~~~~~~~li~~~~~~~~-~~~a~~--------~~~~m~~~------------~--------~~p~~~~~~~ll~~~ 527 (806)
|.. |+.++|+|.+.|...++ ++.-++ +..+-.++ | +.-....|....+.+
T Consensus 868 G~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYl 946 (1666)
T KOG0985|consen 868 GSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYL 946 (1666)
T ss_pred cCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHH
Confidence 777 88999999988876554 222111 11111111 1 001112233333333
Q ss_pred HccCCcH--HHHH--------HHHHhHh---hCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchh----
Q 047492 528 CNMETPA--KQFL--------QLLNMQL---SHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSN---- 590 (806)
Q Consensus 528 ~~~~~~~--~~~~--------~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---- 590 (806)
....+.. ..+. .+.+... -....|+.-.+..+.++...+-+.+-+++++++.-. |+..+-
T Consensus 947 v~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nL 1023 (1666)
T KOG0985|consen 947 VERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNL 1023 (1666)
T ss_pred HhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---Ccccccchhh
Confidence 3333321 1110 1111111 112356667788888899999999999999998732 222211
Q ss_pred --HHHHHHHHhhh-------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 591 --ILMLQSYLKRK-------NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVV 661 (806)
Q Consensus 591 --~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 661 (806)
..++.+..... ...|-.---.+...+..++-+++|..+|++.-- +......++. ..++.+.|.
T Consensus 1024 QnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~ 1095 (1666)
T KOG0985|consen 1024 QNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAY 1095 (1666)
T ss_pred hhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHH
Confidence 11111111000 011111112234455667777888888775432 2222222322 344555555
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC
Q 047492 662 GVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF 741 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 741 (806)
++.+++. .+.+|..+..+-++.|...+|...+-++ .|+..|...++...+.|.+++-+.++..+.+..-
T Consensus 1096 efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1096 EFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 5554442 2244555555555555555555554444 2444455555555555666655555555555433
Q ss_pred CCChhhHHHHHHHHhh-hcHHH
Q 047492 742 PLDTYTYNILLRRLSV-SEIDH 762 (806)
Q Consensus 742 ~~~~~~~~~li~~~~~-g~~~~ 762 (806)
.|.+. ..||-+|++ ++..+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTE 1184 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHH
Confidence 33322 345555555 55444
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.8e-08 Score=100.45 Aligned_cols=281 Identities=16% Similarity=0.088 Sum_probs=197.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 410 PGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
-+........+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+.+..+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 355555566666777788888888888887765 566666666667777888877777776777766555 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChH
Q 047492 490 HGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPD 569 (806)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
--|...|+..+|.+.|.+... +.|. -...|-.+.+.|+-.|..+
T Consensus 320 ~YYl~i~k~seARry~SKat~--lD~~----------------------------------fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATT--LDPT----------------------------------FGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhh--cCcc----------------------------------ccHHHHHHhHHhhhcchHH
Confidence 888888888888888887654 2222 2234666666777777777
Q ss_pred HHHHHHHHHHHC--CC-ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 047492 570 LARAVYELMQRS--GL-VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYE 645 (806)
Q Consensus 570 ~a~~~~~~m~~~--~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~ 645 (806)
.|+..+....+. |. .| +-.+.--|.+.++.+.|.++|.+... +.| |+..++
T Consensus 364 QAmaaY~tAarl~~G~hlP-----------------------~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~ 418 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLP-----------------------SLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLH 418 (611)
T ss_pred HHHHHHHHHHHhccCCcch-----------------------HHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhh
Confidence 777776665532 21 22 33455567777888888888877665 455 455555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCC------CchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQV------TSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
.+.-.....+.+.+|...|+..+..-... -..+.+.|...+.+.+..++|+..++.+....|.+..++.++.-.
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 55555556777888887777765221111 123467777788888889999999999988889999999999999
Q ss_pred hhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047492 720 FSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRL 755 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 755 (806)
|...|+++.|++.|.+.+- +.||..+-..++..+
T Consensus 499 y~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999999887 477776666655443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=6.3e-07 Score=90.84 Aligned_cols=573 Identities=11% Similarity=0.065 Sum_probs=334.1
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGF--ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA 244 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (806)
..|-..+..+.+.|++......|+..+..-+ .....|...+.-....|-++-+.++++..++..+ ..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 4566777777788888888888877776654 2455788888877888888888888888876543 446667777
Q ss_pred HHhcCCHHHHHHHHHHhhhCC-----CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC--cccHHHHHHHH
Q 047492 245 LCKNSRFEQAGKLLEDFKDRD-----DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE--VFRFNFLVSRL 317 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 317 (806)
+++.++.++|-+.+......+ ..+.+...|..+.+..+++-+.-.-+.+=.-+....+.-+| ...|++|.+.|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 888888888888887765431 22344456666666665554332222221112211222344 24577888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY 397 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 397 (806)
++.|.++.|..+|++....- ....-|+.+.++|+.-..-.-+..+=-.-.+.|-.-+... ++-.+
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d-------------l~~~~ 323 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD-------------LELHM 323 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh-------------HHHHH
Confidence 88888888888888776642 3455566666666653322211111100001111111111 22222
Q ss_pred HHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhc
Q 047492 398 EVLKNSIDHG-----------LFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL------RDVTYDKFISALCKA 460 (806)
Q Consensus 398 ~~~~~m~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~ 460 (806)
.-|+.+...+ -.-++.+|..-+.. ..|+..+....+.++.+. +.| -...|..+.+.|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 2333322221 11244455444333 346677777777777654 122 224678888899999
Q ss_pred CChhHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHH
Q 047492 461 NKVEVGYLIHSELSRMNKVAS---ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQF 537 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 537 (806)
|+++.|..+|+...+-+.+.- ..+|..-...=.++.+++.|+++.++... .|.... +..+ ..+.+.
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~y-d~~~pv--- 469 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYY-DNSEPV--- 469 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhh-cCCCcH---
Confidence 999999999998876544421 34455555666667788888887777653 443322 1111 111110
Q ss_pred HHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC-ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 538 LQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL-VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
. .....+..+|...++.--..|-++....+|+++.+..+ .|..... |..+ +
T Consensus 470 Q-------~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N------------------yAmf---L 521 (835)
T KOG2047|consen 470 Q-------ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN------------------YAMF---L 521 (835)
T ss_pred H-------HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH------------------HHHH---H
Confidence 0 00112455688888877788899999999999997654 3322210 2222 2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCchhHHHHHHH--hhccc
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPS-MECYEELIKLLCS---TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH--ALKTR 690 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 690 (806)
-.+.-++++.++|++-+..=-.|+ ...|+..+.-+.+ .-.++.|..+|++.++ |.+|.-.-+-.|+.+ --+-|
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh
Confidence 345557788888877665422343 3456665555443 3368889999999888 444432222222222 12447
Q ss_pred cHHHHHHHHHhhhhccCcch--hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHH---Hhh-hcHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKI--SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRR---LSV-SEIDHAC 764 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~-g~~~~A~ 764 (806)
-...|..+++++..+.++.. ..||..|.--+..--...-..+++++++. -||...-...++- =.+ |.+++|.
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 77888888888876655433 34666665444333444557788888875 4555444433322 234 8888888
Q ss_pred HHHHHHHHc-CCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 765 ELFNRMRRK-GYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 765 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
.+|..-.+- ..+-+..-|.+.-.-=.+.|+-+..+++|+
T Consensus 679 aIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 679 AIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888766543 233455567766666678888666555553
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=4.4e-09 Score=100.41 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=115.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEV 399 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 399 (806)
.|++.+|+++..+-.+.+-.| ...|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544332 2333334445555666666666666666542234445555555666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHH
Q 047492 400 LKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDV-------TYDKFISALCKANKVEVGYLIHSE 472 (806)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~ 472 (806)
++++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665544 45556666666666666666666666666666444332 455555555555555554455555
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047492 473 LSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT 516 (806)
Q Consensus 473 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 516 (806)
.... ...++..-..++.-+...|+.++|.++.++..+++..|+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 4432 222555666777777888888888888888777666665
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.8e-09 Score=99.61 Aligned_cols=288 Identities=16% Similarity=0.115 Sum_probs=198.3
Q ss_pred hcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC-C---CccchHHHHHHhhccCCHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF-E---NDVTRTIMLKCLCKQKKID 217 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~ 217 (806)
-..++++|+++|-+|.+. .| +..+.-++-+.|.+.|..|+|+.+++.+.++.- + ...+...|.+-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356788999999999875 33 233445566777888999999999988887622 1 1125567777888899999
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch----hhHHHHHHHHHHcCCHHHHHHH
Q 047492 218 EAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE----KAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~ 293 (806)
.|+.+|..+.+.+. --....-.|+..|-...++++|+++-+++... +-.+.. ..|..+...+....+.+.|..+
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999887554 23356677888999999999999998887765 333322 3456666666777888888888
Q ss_pred HHhhhhcCCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 294 LKSKNSLEGYVPEVFRFN-FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
+.+..+. .|+.+--+ .+-+.....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8887652 33333333 3346777888999999999888887655556677888888888999988888888877743
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 047492 373 LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD---GKFEQMKDLVIFALER 441 (806)
Q Consensus 373 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 441 (806)
+....-..+-..-....-.+.|...+.+-... +|+...+..+++.-... |...+-..+++.|...
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333444444444444556666665554444 58888888888765433 3345555555555543
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.37 E-value=2e-07 Score=94.67 Aligned_cols=118 Identities=8% Similarity=-0.007 Sum_probs=48.1
Q ss_pred HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHH
Q 047492 283 RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAI 362 (806)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 362 (806)
..|+.++|......-.. +-..+.+.|..+.-.+-...++++|++.|......+. .|...+.-+--.-.+.++++...
T Consensus 53 ~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHH
Confidence 34444444444443321 1122334444444444444445555555544444321 13333333333333444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
.......+.. +.....|..+..++.-.|+...|..++++..
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433321 1122344444444444445555555544444
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=4.4e-08 Score=91.53 Aligned_cols=426 Identities=13% Similarity=0.049 Sum_probs=207.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHH-HHHHHHhcC
Q 047492 243 DALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNF-LVSRLLKEN 321 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~ 321 (806)
.++.+.|++++|...+..+.+. ..++...+..+..++.-.|.+.+|..+-... |+....+. +.+..-+.+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhC
Confidence 3444556666666666555442 2333444444444455555555555554433 22222332 333344555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHcCCChhHHHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI-NSLCGDGSTHEAYEVL 400 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~ 400 (806)
+-++...+.+.+... ..---+|.......-.+++|.++|+++... .|.....|.-+ -+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 555555555444331 111222333333344667777777776653 24544444433 3455666666667766
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHh
Q 047492 401 KNSIDHGLFPG-KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKAN-----KVEVGYLIHSELS 474 (806)
Q Consensus 401 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~ 474 (806)
+--.+. .|| +...|.......+.=.-..|++-.+.+.+.+-.. -..+.-+++.+ +-+.|.+++-.+.
T Consensus 209 ~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 665544 233 2333333333333222223333333333332111 11223333332 3456676665554
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhh
Q 047492 475 RMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQI 554 (806)
Q Consensus 475 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (806)
+.- +..--.|+-.|.+.+++.+|..+.+++.- ..|-......+..+-..
T Consensus 282 ~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG------------------------- 330 (557)
T KOG3785|consen 282 KHI----PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG------------------------- 330 (557)
T ss_pred hhC----hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh-------------------------
Confidence 332 12333455567888888888888776532 23333333333222111
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
.-.......+-|.+.|+..-+++..-|... --.++.+++.-..++++.+-+++.+..
T Consensus 331 -----Qe~gSreHlKiAqqffqlVG~Sa~ecDTIp------------------GRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 331 -----QETGSREHLKIAQQFFQLVGESALECDTIP------------------GRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred -----hhcCcHHHHHHHHHHHHHhccccccccccc------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112233445555554444433332221 123444555555566666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhH-
Q 047492 635 NGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLL- 713 (806)
Q Consensus 635 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 713 (806)
.-...|...|+ +.++++..|++.+|.++|-.+....++.+..-...|...|..+++...||..+-... .+.+..++
T Consensus 388 YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLL 464 (557)
T KOG3785|consen 388 YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLL 464 (557)
T ss_pred HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHH
Confidence 43333444443 556666677777777766665544444444344445555666666666666554432 23333333
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHH
Q 047492 714 GQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNI 750 (806)
Q Consensus 714 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 750 (806)
..+.+-|.+++++--|-+.|+.+... .|++..|..
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 33445666777777777777766653 566665543
No 62
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=2e-10 Score=116.48 Aligned_cols=287 Identities=12% Similarity=0.037 Sum_probs=205.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHH-
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN--IKLRDVTYDKFISALCKANKVEVGYL- 468 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~- 468 (806)
+..+|...|.....+- .-+..+...+..+|...+++++++.+|+.+.+.. ..-+..+|++.+.-+-+. .+..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4567888888754442 2244566677788888888888888888877653 122455777766554332 1222
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCC
Q 047492 469 IHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQ 548 (806)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 548 (806)
+-+++.+.+.. .+.+|.++...|.-+++.+.|++.|++.++ +.|+
T Consensus 409 Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~-------------------------------- 453 (638)
T KOG1126|consen 409 LAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPR-------------------------------- 453 (638)
T ss_pred HHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCc--------------------------------
Confidence 22334443333 778999999999999999999999998876 3332
Q ss_pred CCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 047492 549 ETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGF 628 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 628 (806)
...+|+.+.+-+.....+|.|...|+... ++.|.... +|.-+...|.+.++++.|+-.
T Consensus 454 --faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~rhYn------------------AwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 454 --FAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPRHYN------------------AWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred --cchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCchhhH------------------HHHhhhhheeccchhhHHHHH
Confidence 33445555555666677888888888877 44554432 366677888889999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccC
Q 047492 629 MREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 629 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
|++..+ +.| +.+....+...+.+.|+.|+|++++++....+.+.....|. -...+...++..+|+..++++.+-.|
T Consensus 512 fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 512 FQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 988887 566 45566667777888899999999999888776544333332 33456677889999999999988889
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCC
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPL 743 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 743 (806)
.+..++-.+...|.+.|+.+.|+.-|--+.+...++
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999999999999999999999888864433
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=1.4e-07 Score=95.74 Aligned_cols=464 Identities=16% Similarity=0.069 Sum_probs=264.9
Q ss_pred CCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047492 109 AKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVV 188 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 188 (806)
.+++..-.++.+.+.+ +.+....+.....-.+...|+-++|......-.... .-+.++|+.+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3444444444444444 233344444444444556677888877777666543 23667787777667777788888888
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
|+.....++.|...+.-+.-.-++.|+++.....-....+..+ ..-..|..+..++.-.|++..|..+++.........
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8888888877777777766666777777777776666665433 233567777777778888888888888887763334
Q ss_pred cchhhHHHHH------HHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047492 269 KLEKAYDVWL------RNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG 342 (806)
Q Consensus 269 ~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 342 (806)
|+...|.... ....+.|..++|++.+..... .+......-.+-...+.+.+++++|..++..+...+ ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 5555554333 234567778888877766532 111122222334466778888888888888888764 666
Q ss_pred hhHHHHHH-HHHHcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 343 VTMNTVLC-FFCKAGMVDVAI-ELYKSRSEFGLSPNGIVYNYLINSLCGDGS-THEAYEVLKNSIDHGLFPGKKTLSILA 419 (806)
Q Consensus 343 ~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 419 (806)
.-|...+. ++.+--+.-++. .+|....+. .|....-..+--....... .+..-+++..+.+.|+.+ ++..+.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 65555444 443333333333 666665442 1211111111111111122 233445566666777654 333333
Q ss_pred HHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 047492 420 DALCRDGKFEQMKDLVIFALE----RN----------IKLRDVT--YDKFISALCKANKVEVGYLIHSELSRMNKVASEN 483 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 483 (806)
.-|-.....+-.+++...+.. .| -+|+... +--++..+-+.|+++.|..+++.....-+. -+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liE 406 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIE 406 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHH
Confidence 333222222222222222211 11 0344433 334666777888888888888877654332 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhh
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAG 563 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
.|..-.+.+...|++++|..++++..+-. .| |...-+--..-..
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a-----------------------------------DR~INsKcAKYmL 450 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TA-----------------------------------DRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch-----------------------------------hHHHHHHHHHHHH
Confidence 45555677788888888888888876631 12 2222112233344
Q ss_pred cCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 047492 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTL--IVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+..+.++|.++.....+.|. +...+..-.++. |-.+ ..+|.+.|++.+|++-|..+..
T Consensus 451 rAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcm-----------Wf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF--GAVNNLAEMQCM-----------WFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HccccHHHHHHHHHhhhccc--chhhhHHHhhhH-----------HHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 56788888888888877765 333322222222 4333 3467788888888877666554
No 64
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.4e-07 Score=97.77 Aligned_cols=374 Identities=13% Similarity=0.088 Sum_probs=176.4
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC--------CCCc-cchHHHHHHh
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG--------FEND-VTRTIMLKCL 210 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~-~~~~~li~~~ 210 (806)
.|...|+.+.|.+-.+-+. +...|..+.+.|.+..+.|-|.-.+..|.... ..+. .+-..+.-..
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3555677777666665555 34567777777777777777766666554321 0111 2222222233
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (806)
...|.+++|+.++.+-.+.+ .|=..|...|.+++|.++-+.-... .-..||......+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhccHHHH
Confidence 45666677777666665432 2334555667777776665432211 1123555555555666667777
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 291 LEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
++.|++... |--..+..|.. +........+.+ .|...|.-....+-..|+.+.|+.+|....+
T Consensus 878 leyyEK~~~-----hafev~rmL~e------~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 878 LEYYEKAGV-----HAFEVFRMLKE------YPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhcCC-----hHHHHHHHHHh------ChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 777765421 11111111110 000011111111 1223333333333344555555555554332
Q ss_pred CC--------------------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 047492 371 FG--------------------LSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD----- 425 (806)
Q Consensus 371 ~~--------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----- 425 (806)
.= -.-|....-.|.+.|-..|++.+|..+|.+... |...|+.|-.+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 00 012333344455555555555555555544331 11111111111
Q ss_pred --------C--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHhh--cCCCCCHHHH
Q 047492 426 --------G--KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS--------ELSR--MNKVASENTY 485 (806)
Q Consensus 426 --------g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~--~~~~~~~~~~ 485 (806)
| +.-.|-..|++ .|. -+..-+..|-+.|.+.+|+++.= ++.. .+...|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1 11112222222 110 11223345666666666665421 1122 2333477777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHh--hCCCCChh----hHHHHH
Q 047492 486 IQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQL--SHQETNFQ----IYNFFI 559 (806)
Q Consensus 486 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~l~ 559 (806)
+...+-|+.+.++++|..++...++ |...+..|...+-. ...++.++.- +...|+.. +...+.
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv~--vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNVR--VTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCc--hhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 7777888888888888888777655 44445555444432 1222222211 11223332 356667
Q ss_pred HhhhcCCChHHHHHHHHH
Q 047492 560 DGAGHVKRPDLARAVYEL 577 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~ 577 (806)
..|.+.|.+..|-+-|.+
T Consensus 1153 e~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHhccchHHHHHHHhh
Confidence 777788887777665544
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=7e-08 Score=96.78 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=104.0
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH--------HHHhCCCCCCchh
Q 047492 609 YNTLIVGLCK--AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMN--------HLEGHGRQVTSFI 678 (806)
Q Consensus 609 ~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~ 678 (806)
+..++..+.+ ...+..|..++...-+....-+....-..+......|+++.|.+++. .+.+.+..|. +
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~ 419 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--T 419 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--H
Confidence 4555555443 22456666666666553222234455556666778888888888888 6666555554 3
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhh-------hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHH
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGML-------INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNIL 751 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 751 (806)
...++..+++.++...|...+.++. .+...-..++..++..-.+.|+.++|...++++.+. .++|..+...+
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~l 498 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHH
Confidence 3445556666666555655555554 222222333444455556779999999999999997 58899999999
Q ss_pred HHHHhhhcHHHHHHHHHHHH
Q 047492 752 LRRLSVSEIDHACELFNRMR 771 (806)
Q Consensus 752 i~~~~~g~~~~A~~~~~~m~ 771 (806)
+.+|+.=+.++|..+-..+.
T Consensus 499 V~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 499 VTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred HHHHHhcCHHHHHHHhhcCC
Confidence 99999978888887755543
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=7.6e-07 Score=92.50 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHH--HHHHHHHcCCCCChhhHHHHHHHHh
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIE--GLQKMIEQCFPLDTYTYNILLRRLS 756 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~li~~~~ 756 (806)
|+.....+...|...+|...|..+..-.|.++.+..++...+...|+..-|.. ++.++.+.+ +.+...|-.+...+.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33333444444555555555555555555556666666666666665555555 666666653 455666666666666
Q ss_pred h-hcHHHHHHHHHHHHHc
Q 047492 757 V-SEIDHACELFNRMRRK 773 (806)
Q Consensus 757 ~-g~~~~A~~~~~~m~~~ 773 (806)
+ |+.++|.+.|+-..+.
T Consensus 766 ~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQL 783 (799)
T ss_pred HccchHHHHHHHHHHHhh
Confidence 6 7777777666665543
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.5e-11 Score=84.16 Aligned_cols=49 Identities=35% Similarity=0.678 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhc
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYN 791 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 791 (806)
||..+||++|.+|++ |++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 799999999999999 9999999999999999999999999999999985
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.2e-06 Score=82.21 Aligned_cols=457 Identities=11% Similarity=0.044 Sum_probs=258.3
Q ss_pred HHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 103 FKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 103 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
++-+...+++..|..+++.-...+-.....+---+..++-+.|++++|+.+|..+.+.. .|+...+-.+..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34445566677777777665543322222333334556777899999999999887643 55666666666666667888
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
.+|..+-.... .++.....|.....+.|+-++-..+.+.+...- .---+|.+...-.-.+++|++++.+..
T Consensus 108 ~eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654442 344455566666677788777777666654321 223344455445566889999998887
Q ss_pred hCCCCCcchhhHHHH-HHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047492 263 DRDDVVKLEKAYDVW-LRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD 341 (806)
Q Consensus 263 ~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 341 (806)
.. .|+-...|.- .-+|.+..-++-+.++++-..+. ++.++..-|.......+.=.-..|..-.+++...+-..
T Consensus 179 ~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 QD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred hc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 54 3444444443 33566777777777777766542 22233444444433333222223333344444432111
Q ss_pred hhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 047492 342 GVTMNTVLCFFCKA-----GMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 342 ~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
| ..+.-.++. .+-+.|++++-.+.+. -|. .--.|+-.|.+.+++.+|..+.+++.-. .|-.....
T Consensus 253 ---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1 122333333 2346777777666542 232 2334566688899999999988775421 23333322
Q ss_pred HHHHHH-----HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 417 ILADAL-----CRDGKFEQMKDLVIFALERNIKLRDV-TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 417 ~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
.+..+- .......-|.+.|...-+.+...|.. --.++..++.-..+++++.-+++.+..--...|...| .+..
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQ 401 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQ 401 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHH
Confidence 222221 11123455777777665555444433 2344556666677888888888877665444344444 4778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHH
Q 047492 491 GFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDL 570 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
+++..|++.+|.++|-++....++ |..+|.+ .+.+.|.++++++.
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s----------------------------------~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKS----------------------------------MLARCYIRNKKPQL 446 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHH----------------------------------HHHHHHHhcCCchH
Confidence 888899999999988776532221 2233332 33455666677777
Q ss_pred HHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047492 571 ARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECY 644 (806)
Q Consensus 571 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 644 (806)
|.+++-++.. ..+..+ ....+...|.+.+.+--|.+.|+.+.. +.|+++.|
T Consensus 447 AW~~~lk~~t---~~e~fs------------------LLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTNT---PSERFS------------------LLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcCC---chhHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 7666544431 122211 133445567777777777777776665 44554433
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=6.4e-07 Score=93.91 Aligned_cols=294 Identities=11% Similarity=0.089 Sum_probs=201.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHH-h-
Q 047492 101 AIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALV-E- 178 (806)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~- 178 (806)
-...++...|+++.|.+.|+.-.. .+.............+.+.|+.++|..+|..+.+. .|+...|...+..+. -
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhh
Confidence 345677889999999999988666 45666777788889999999999999999999988 677776666655554 1
Q ss_pred ----cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH-HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 179 ----QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI-DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 179 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
..+.+....+|+++....+... +...+.-.+..-..+ ..+..++..+..+|+ | .+|+.|-..|......+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-P--slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGV-P--SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHcChhHHHH
Confidence 1245677888888877654322 222222122221222 345566777778887 3 356677777776666666
Q ss_pred HHHHHHHhhhCC-------------CCCcchh--hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHH
Q 047492 254 AGKLLEDFKDRD-------------DVVKLEK--AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRL 317 (806)
Q Consensus 254 A~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~ 317 (806)
..+++..+.... ...|+.. ++.-+...|...|++++|++++++..+. .|+ +..|..-...+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~Karil 238 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 666666654320 1234443 4455677788899999999999987652 455 55677777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHc
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGI------VY--NYLINSLCG 389 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~ 389 (806)
-..|++.+|.+.++....... -|...=+-....+.+.|++++|.+++......+..|-.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887643 366666667777888999999999988887655433221 11 334567888
Q ss_pred CCChhHHHHHHHHHHh
Q 047492 390 DGSTHEAYEVLKNSID 405 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~ 405 (806)
.|++..|++.|....+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888777766553
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=5.6e-09 Score=113.60 Aligned_cols=198 Identities=10% Similarity=-0.016 Sum_probs=139.9
Q ss_pred CChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 047492 550 TNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFM 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 629 (806)
.++..+..+...+...|++++|...|++..+. .|+... .|..+...+...|++++|...+
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~------------------a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISAD------------------IKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHHHCCCHHHHHHHH
Confidence 35666777777788889999999999998854 566543 3777888899999999999999
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCc
Q 047492 630 REMRHNGMYPSM-ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS 708 (806)
Q Consensus 630 ~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 708 (806)
++..+. .|+. ..+..++..+...|++++|...++++.+...+.++..+..+...+...|+.++|...+.++....+.
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999884 4542 2233344456678899999999998876653334455666777778899999999999888777777
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcC-CCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcC
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC-FPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKG 774 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g 774 (806)
+....+.+...|...|+ +|...++++.+.. ..+....+..+ .|.- |+-+.+. +|+++.+.|
T Consensus 474 ~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~-~~~~~~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEK-MWNKFKNED 536 (553)
T ss_pred hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHH-HHHHhhccc
Confidence 77777888888888884 7777777776632 23333333333 3444 5665554 447776553
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=6.8e-09 Score=100.65 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
+..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.+++..+... .+...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Confidence 333333444444444444444444433333333444444444444444444444444443322 1223333444444444
Q ss_pred CCHHHHHHHHHHhh
Q 047492 249 SRFEQAGKLLEDFK 262 (806)
Q Consensus 249 g~~~~A~~~~~~~~ 262 (806)
|++++|.+.+++..
T Consensus 113 g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 113 GKYEQAMQQFEQAI 126 (234)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=1.1e-05 Score=83.01 Aligned_cols=266 Identities=14% Similarity=0.089 Sum_probs=159.5
Q ss_pred CCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHH-------------
Q 047492 91 HFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKM------------- 157 (806)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------------- 157 (806)
....+......+..+|.+..-++.+-++++.+..- ...+..|.+-.-+.+|+++-.-.
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfafp~evv~lee~wg 713 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWG 713 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHh
Confidence 34456667777777888777777777777776542 22223333322233333332111
Q ss_pred ---hhcCCCCCh--------hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHh
Q 047492 158 ---RFQGMDLDD--------YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQL 226 (806)
Q Consensus 158 ---~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 226 (806)
...| +.|. ......+.+-.....|.+|+.+++.+..... ....|..+...|+..|+++.|+++|-+.
T Consensus 714 ~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 714 DHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc
Confidence 0000 0010 0111223333455667777777776654422 2235777788888888888888887553
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC
Q 047492 227 VSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE 306 (806)
Q Consensus 227 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (806)
..++-.|.+|.+.|+++.|.++-++.. +.......|.+-..-+-+.|++.+|.+++-.+.. |+
T Consensus 792 ---------~~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~ 854 (1636)
T KOG3616|consen 792 ---------DLFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PD 854 (1636)
T ss_pred ---------chhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----ch
Confidence 245667788888888888888777655 3344556666666777778888888887765532 43
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 307 VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386 (806)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 386 (806)
..|..|-+.|..++.+++.++-... .-..|...+..-|-..|++..|+.-|-+..+ |.+-+..
T Consensus 855 -----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnm 917 (1636)
T KOG3616|consen 855 -----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNM 917 (1636)
T ss_pred -----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHH
Confidence 3467778888888877777643221 1123445556666777888888777655432 5556667
Q ss_pred HHcCCChhHHHHHHH
Q 047492 387 LCGDGSTHEAYEVLK 401 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~ 401 (806)
|-.++.|++|.++-+
T Consensus 918 yk~s~lw~dayriak 932 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhhHHHHHHHHh
Confidence 777777777766644
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=8.6e-07 Score=92.94 Aligned_cols=298 Identities=16% Similarity=0.058 Sum_probs=173.0
Q ss_pred HHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHHc---
Q 047492 280 NLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV-LCFFCKA--- 355 (806)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~--- 355 (806)
.+...|++++|++.++... ..+.............+.+.|+.++|..++..+.+.+ ||...|-.. ..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3455566666666665532 1222223444455566677777777777777777664 444444333 3333111
Q ss_pred --CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047492 356 --GMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTH-EAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 356 --g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (806)
.+.+....+|+++.+. -|.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2455666667666553 243333333332222222232 3445555566666542 4555555555444444445
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 433 DLVIFALER----N----------IKLRD--VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 433 ~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
+++...... + -+|+. .++.-+...|...|++++|.+++++..+..+. .+..|..-.+.+...|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 555544322 1 12333 24455667777888888888888888877655 5777888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHH
Q 047492 497 RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYE 576 (806)
Q Consensus 497 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
++.+|.+.++..+... ..|..+-+-....+.++|++++|.+++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD------------------------------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD------------------------------------LADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred CHHHHHHHHHHHHhCC------------------------------------hhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888877631 1233344455666778899999999988
Q ss_pred HHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 577 LMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 577 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
...+.+..| .....-.++. +-......+|.+.|++..|++.|..+.+
T Consensus 287 ~Ftr~~~~~--~~~L~~mQc~---------Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 287 LFTREDVDP--LSNLNDMQCM---------WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hhcCCCCCc--ccCHHHHHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 887766522 2211111211 0124567789999999999888776654
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.2e-06 Score=84.45 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh-------hccCcchhhHHHHHHhhhccccchh
Q 047492 656 NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML-------INEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 656 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
.+..+.+++...-+........+.-..+......|+.+.|++++.... ......+.+..++...|.+.++.+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 577788888777665444434445555666778999999999998322 4455667788888999999999998
Q ss_pred hHHHHHHHHHc--CCCCChhhHHHHHHHH----hh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHH
Q 047492 729 DIEGLQKMIEQ--CFPLDTYTYNILLRRL----SV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERR 801 (806)
Q Consensus 729 A~~~~~~~~~~--~~~~~~~~~~~li~~~----~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~ 801 (806)
|..++.++.+. ...+.....++++.-. .+ |+.++|..+++++... -++|..+...++.+|++. +.+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 99998888763 1233334444444333 34 9999999999999975 456888888999999875 44666665
Q ss_pred HHh
Q 047492 802 LEE 804 (806)
Q Consensus 802 l~~ 804 (806)
-..
T Consensus 514 ~k~ 516 (652)
T KOG2376|consen 514 SKK 516 (652)
T ss_pred hhc
Confidence 443
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=7.9e-09 Score=100.19 Aligned_cols=194 Identities=8% Similarity=-0.041 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 47788899999999999999999998742 334677788888999999999999999999887543 4456677788889
Q ss_pred ccccHHHHHHHHHhhhhcc--CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINE--QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC 764 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~ 764 (806)
..|+.++|...++++.... +.....+..+...|...|+.++|...+++..+. .+.+...+..+...+.. |++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999997532 344556777888999999999999999999986 34456778888888888 9999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 765 ELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
..+++.... ...+...+..+...+...|+.++|.++.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999877 3446667777888889999999999987764
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=7.2e-06 Score=85.61 Aligned_cols=261 Identities=14% Similarity=0.146 Sum_probs=155.8
Q ss_pred CccchHHHHH--HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------C
Q 047492 199 NDVTRTIMLK--CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDV--------V 268 (806)
Q Consensus 199 ~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~ 268 (806)
|..|...+++ -|...|+.+.|.+-.+-+.+ ..+|..|.++|.+..+.|-|.-.+-.|....|. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 35567888888777766653 356888888888888877777666666543111 1
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 269 KLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
|+ .+-..+.-.....|.+++|+.+|.+.+. |..|=..|-..|.|++|.++-+.--.-.+ ..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 11 1222222233456777777777776654 33344455566777777776653222111 2344444
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF 428 (806)
Q Consensus 349 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 428 (806)
...+-..++.+.|++.|++... |--..+..|. .+......+.+++. |...|..-..-+...|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 4455556677777777764321 1112222221 12222233333322 334555555556677888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM 508 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 508 (806)
+.|..++....+ |-++++..|-.|+.++|.++.++-. |......+.+.|-..|++.+|..+|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888876543 4567778888899999988876542 5566677889999999999999999887
Q ss_pred HH
Q 047492 509 EE 510 (806)
Q Consensus 509 ~~ 510 (806)
+.
T Consensus 994 qa 995 (1416)
T KOG3617|consen 994 QA 995 (1416)
T ss_pred HH
Confidence 64
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=9.8e-06 Score=84.57 Aligned_cols=206 Identities=11% Similarity=0.014 Sum_probs=113.0
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 047492 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPN-GIVYN 381 (806)
Q Consensus 303 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 381 (806)
+..|...|..+.-++...|+++.+.+.|++.... ..-....|..+-..|...|.-..|..+++.-....-.|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456666666666777777777777777766542 223455666666667777777777777766443221132 22222
Q ss_pred HHHHHH-HcCCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCC
Q 047492 382 YLINSL-CGDGSTHEAYEVLKNSIDH--GL--FPGKKTLSILADALCRD-----------GKFEQMKDLVIFALERNIKL 445 (806)
Q Consensus 382 ~li~~~-~~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 445 (806)
..-..| -+.+..++++.+-.+.... +. ......|..+.-+|... ....++.+.+++.++.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 222222 2345666666666655541 11 11223333333333221 113345566666655542 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
|....-.+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22222223334556667777777777777665555677777777777777777777777766554
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=7.2e-06 Score=84.42 Aligned_cols=197 Identities=11% Similarity=0.047 Sum_probs=110.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 103 FKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 103 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
-..|...|+++.+..-+-+.. .....+.+-..+..|.+|+.+++.+... +.-.--|..+.+.|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhH
Confidence 344455555555544333221 1223455566777888888888887765 22344567777788888888
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
+.|+++|-+. ..++-.|..|.+.|++++|.++-++.. |.......|-+-..-+-+.|++.+|++++-.+.
T Consensus 782 e~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 782 EIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 8888877544 245666778888888888887766553 333334445444444445555555544442211
Q ss_pred hC---------C-----------CCCcc--hhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhc
Q 047492 263 DR---------D-----------DVVKL--EKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKE 320 (806)
Q Consensus 263 ~~---------~-----------~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 320 (806)
.. . ...|+ ..|...+..-+-..|++..|...|-+..+ |.+.++.|-..
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s 921 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKAS 921 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhh
Confidence 10 0 00111 12344455555566666666666655432 55556666666
Q ss_pred CCHHHHHHHH
Q 047492 321 NRLMEVFDLF 330 (806)
Q Consensus 321 ~~~~~a~~~~ 330 (806)
+-|++|.++-
T Consensus 922 ~lw~dayria 931 (1636)
T KOG3616|consen 922 ELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHH
Confidence 6666665544
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=9.2e-09 Score=94.96 Aligned_cols=236 Identities=14% Similarity=0.078 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 047492 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTY-DKFI 454 (806)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 454 (806)
|-.--+-+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+..+++.|..++.+-++. .|-.+|| ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3333455667777777777777777766655 345556666777777777777777777765554 2333333 3455
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPA 534 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 534 (806)
+.+-..++.++|.++++...+.... ++.....+...|.-.++++.|+.+|+++.+.|+.
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------------- 356 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------------- 356 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--------------------
Confidence 5666666666666666666655443 4555555555566666666666666666655433
Q ss_pred HHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 535 KQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
++..|+.+.-.|.-.++++-++.-|++....-..|+... ..|..+..
T Consensus 357 ----------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa-----------------DvWYNlg~ 403 (478)
T KOG1129|consen 357 ----------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA-----------------DVWYNLGF 403 (478)
T ss_pred ----------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh-----------------hhhhccce
Confidence 233444444444455555555555555554333333322 12444555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH 670 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 670 (806)
.....|++.-|.+.|+-...++ ..+.+.++.+.-.-.+.|++++|..+++.....
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred eEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5555566666666665555432 223444555555555566666666666555443
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=4.8e-08 Score=106.37 Aligned_cols=182 Identities=14% Similarity=0.054 Sum_probs=84.8
Q ss_pred cchHHHHHHHHHhcCCCCccchHHHHHHhh---------ccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 182 FDAVAVVSKQISMRGFENDVTRTIMLKCLC---------KQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
+++|...|++..+..+.+...|..+..++. ..+++++|...+++..+.++ .+..++..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHH
Confidence 345555555555555444444444433322 12234555555555555443 33444555555555555555
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHH
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV-FRFNFLVSRLLKENRLMEVFDLFM 331 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 331 (806)
+|...|++.... .+.+...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 356 ~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 356 VGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 555555555543 1222334444555555555555555555555432 2221 112222223444555555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 332 DMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 332 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
+..+...+-+...+..+..++...|+.++|...++++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55443211122334444444555555555555555543
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.9e-06 Score=79.50 Aligned_cols=288 Identities=12% Similarity=-0.047 Sum_probs=171.2
Q ss_pred hcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 424 RDGKFEQMKDLVIFALER-NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
-.++...+...+-.+... -++.|.+....+...+...|+.++|+..|+.....++. +..........+.+.|+++...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444433332 34556667777777777777777777777776554433 2223333333445566666666
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCC
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSG 582 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 582 (806)
.+...+... .......|-.-+......+++..|+.+-++.++.
T Consensus 287 ~L~~~Lf~~------------------------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~- 329 (564)
T KOG1174|consen 287 ALMDYLFAK------------------------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS- 329 (564)
T ss_pred HHHHHHHhh------------------------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc-
Confidence 555555431 1112222333333334456677777777766633
Q ss_pred CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHH
Q 047492 583 LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVV 661 (806)
Q Consensus 583 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 661 (806)
.|+... .|-.-...+...|++++|.-.|+..+. +.| +..+|.-++.+|...|++.+|.
T Consensus 330 -~~r~~~------------------alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 330 -EPRNHE------------------ALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred -Ccccch------------------HHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHH
Confidence 343322 243444556677777777777777765 454 5677777777777777777777
Q ss_pred HHHHHHHhCCCCCCchhHHHHH-HHh-hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 662 GVMNHLEGHGRQVTSFIGNTLL-LHA-LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
-+.+...+. +..+..+...+. ..+ .....-++|.++++......|......+.+...+...|+.++++.++++....
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 666554433 122222222221 111 12334567777777777777777777777778888888888888888877763
Q ss_pred CCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 740 CFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 740 ~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.||...-+.|.+.+.. +.+.+|++.|....+.
T Consensus 468 --~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 468 --FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred --ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6777777777777777 7777777776665543
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.4e-08 Score=91.31 Aligned_cols=229 Identities=8% Similarity=0.029 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLL 318 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 318 (806)
+.+..+|.+.|.+.+|...|+.-... .|-+.||..+-++|.+-.++..|+.++.+-.+ .++-|+....-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 45566666666666666666655543 34445566666666666666666666665543 22222222233444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 319 KENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
..++.++|.++++...+.. +.++....++...|.-.++.+-|++.|+++.+.|+ .+...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 5566666666666655532 12444444555555555666666666666666664 345555555555666666666666
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 399 VLKNSIDHGLFPG--KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 399 ~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
-|.+....-..|+ ..+|..+-......|++..|.+.|+-.+..+ ......++.|.-.-.+.|+++.|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6655553322222 2234444444445555555655555555444 33344555555555555555555555555443
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.4e-07 Score=83.04 Aligned_cols=352 Identities=13% Similarity=0.066 Sum_probs=179.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
.-+++.+..+.+..++.+|++++..-.+. .| +......+..+|....++..|.+.|+++-...+.-..--.--...+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 33455555556666677777766666555 33 4444555555555666666666666666554332211111223444
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD--ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLD 288 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (806)
-+.+.+.+|.++...|... ++...-..-+. .....+++..+..++++.... + +..+.+.......+.|+.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-N---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-C---ccchhccchheeeccccHH
Confidence 5556666666666666442 11111111111 122345666666666555432 1 1122233333344666666
Q ss_pred HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHH---HH
Q 047492 289 LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE---LY 365 (806)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~---~~ 365 (806)
.|.+-|+...+..|+.|- ..||..+. ..+.|+...|++...++.++|++..+.. ++ |...+... +=
T Consensus 162 aAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl-gI--------Gm~tegiDvrsvg 230 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL-GI--------GMTTEGIDVRSVG 230 (459)
T ss_pred HHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc-Cc--------cceeccCchhccc
Confidence 666666666665555443 34554443 3345566666666666666665422111 00 00000000 00
Q ss_pred H--HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 366 K--SRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID-HGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 366 ~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
+ .|... .-+..+|.-...+.+.|+++.|.+-+-+|.- .....|+.|...+.-.- ..+++.+..+-+.-+.+.+
T Consensus 231 Nt~~lh~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 231 NTLVLHQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred chHHHHHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 0 00000 0012334344456678899999998888873 22345666665443221 2345666666666666665
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 443 IKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV-ASENTYIQLIHGFNKSNRADIAARLLVEM 508 (806)
Q Consensus 443 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 508 (806)
+....||..++-.||+..-++.|-.++.+-...... .+...|+.+=..-...-..++|.+-++.+
T Consensus 307 -PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 307 -PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred -CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456678888899999998888888877553222111 13344443332223344566666555544
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=8.4e-08 Score=98.98 Aligned_cols=251 Identities=14% Similarity=0.029 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 047492 448 VTYDKFISALCKANKVEVGYLIHSELSRM-----NK-VASE-NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALH 520 (806)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (806)
.+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34555666777777777777766655433 11 1112 22345777888999999999999998651
Q ss_pred HHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH---C--CC-ccCcchhHHHH
Q 047492 521 RAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR---S--GL-VPQLGSNILML 594 (806)
Q Consensus 521 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~--~~-~p~~~~~~~~~ 594 (806)
....+... .+.-..+++.|...|.+.|++++|...++...+ . +. .|...+
T Consensus 271 --~e~~~G~~-----------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~----- 326 (508)
T KOG1840|consen 271 --REEVFGED-----------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA----- 326 (508)
T ss_pred --HHHhcCCC-----------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH-----
Confidence 00010000 011233577788889999999998888876553 1 21 122222
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 595 QSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN---GMYP----SMECYEELIKLLCSTKNYDMVVGVMNHL 667 (806)
Q Consensus 595 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 667 (806)
.++.++..|+..+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++++++
T Consensus 327 -------------~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 327 -------------QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred -------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3778888899999999999999876652 1222 2457888999999999999999999887
Q ss_pred HhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc----C--C
Q 047492 668 EGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ----C--F 741 (806)
Q Consensus 668 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~ 741 (806)
......... .........++.|...|...++..+|..+|.+.... | .
T Consensus 394 i~~~~~~~~---------------------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 394 IQILRELLG---------------------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHhccc---------------------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 654211100 001111233456666666666666666666655432 1 2
Q ss_pred CCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 742 PLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 742 ~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
+....+|..|...|.. |++++|.++.+.+.
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2335678888888888 99999888876655
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.8e-05 Score=84.82 Aligned_cols=575 Identities=10% Similarity=-0.035 Sum_probs=277.9
Q ss_pred cchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047492 182 FDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDF 261 (806)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 261 (806)
...+...|-+..+..+.-...|..|...|+..-+...|.+.|+...+.+. -+...+....+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444444444444333344677777777776677777777777766553 45566677777777777777777774332
Q ss_pred hhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047492 262 KDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD 341 (806)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 341 (806)
.+......-..-|-..--.|.+.++...|..-|+.... --+.|...|..+..+|...|++..|.++|.+.... .|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 22201101111222223335566777777777776653 22345667777777777777777777777766542 343
Q ss_pred hhhHHHH--HHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-------C
Q 047492 342 GVTMNTV--LCFFCKAGMVDVAIELYKSRSEF------GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID-------H 406 (806)
Q Consensus 342 ~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~ 406 (806)
. +|... ...-+..|.+.+|...+..+... +..--..++-.+...+.-.|-..+|..++++-++ +
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 22222 22335567777777776665431 1011112232333333333333344444443222 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---h---HHHHHHHHHhhcCCCC
Q 047492 407 GLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV---E---VGYLIHSELSRMNKVA 480 (806)
Q Consensus 407 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~ 480 (806)
...-+...|-.+-+ +..+|-... .+ .|+......+..-.-+.+.. | .+.+.+-. ......
T Consensus 708 ~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAI 773 (1238)
T ss_pred hhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhh
Confidence 11111122221111 222222211 11 23332222222212222222 1 11111111 111111
Q ss_pred CHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCCh
Q 047492 481 SENTYIQLIHGFNK----SN----RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNF 552 (806)
Q Consensus 481 ~~~~~~~li~~~~~----~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (806)
+..+|..++..|.+ .+ +...|+..+...++ ...+...+-..+......+...-... ..-......+...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQH-CfIks~~sep~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQH-CFIKSRFSEPTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhh-hhhhhhhccccch
Confidence 34455555544433 11 23456677776665 33444444444444444344211111 1112223334456
Q ss_pred hhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 047492 553 QIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREM 632 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 632 (806)
.+|..+.-.+.+..+++.|...|...+ .+.|+... .|--....-...|+.-++..+|..-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~q--SLdP~nl~------------------~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQ--SLDPLNLV------------------QWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhh--hcCchhhH------------------HHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 668888888889999999999999988 44565432 2544444445577777777777762
Q ss_pred Hh----CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---------CCCCCchhHHHHHHHhhccccHHHHHHHH
Q 047492 633 RH----NGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH---------GRQVTSFIGNTLLLHALKTRDLYEAWIRL 699 (806)
Q Consensus 633 ~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 699 (806)
-+ .|--+...-|......-...|+.++-+...+.+... +.+.+.+.|...+...-..+....|....
T Consensus 911 ~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela 990 (1238)
T KOG1127|consen 911 DELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELA 990 (1238)
T ss_pred HHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 233444433333333344566655544443333221 23334445555544444555555555555
Q ss_pred Hhhhh--ccCcchhhHH----HHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHHHHHHHHHc
Q 047492 700 RGMLI--NEQSKISLLG----QLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRK 773 (806)
Q Consensus 700 ~~~~~--~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~~~~~m~~~ 773 (806)
.+... ...-+...+| .....+...|.++.|...+..... .-+..+-.+-+..+.+++++++.+.|++...-
T Consensus 991 ~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsi 1067 (1238)
T KOG1127|consen 991 TRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSI 1067 (1238)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhh
Confidence 55431 1122223333 334445555666654433322211 11222222223334448888888888887744
Q ss_pred -CCCCCh-hhHHHHHhhhhccCCHHHHHHHH
Q 047492 774 -GYEPDQ-WTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 774 -g~~p~~-~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
.-+-|. +....++-+....|..+.|...+
T Consensus 1068 s~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1068 SNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred cccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 222232 33445666666777777776654
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=1.7e-07 Score=96.83 Aligned_cols=176 Identities=14% Similarity=0.042 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSR---M--NK-VASE-NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHR 521 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 521 (806)
+++.|..+|.+.|++++|...++...+ . +. .|.. ..++.+...+...+++++|..++....+.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i---------- 354 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI---------- 354 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----------
Confidence 444455555666666655555444321 1 11 1112 23566677788888899998888865541
Q ss_pred HHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHH
Q 047492 522 AVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSY 597 (806)
Q Consensus 522 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~ 597 (806)
+..++ ......-+.+++.+...|.+.|++++|.++|++.... +..-+..+
T Consensus 355 -~~~~~-----------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-------- 408 (508)
T KOG1840|consen 355 -YLDAP-----------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-------- 408 (508)
T ss_pred -HHhhc-----------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh--------
Confidence 00000 0001123456899999999999999999999987742 11111111
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH----NGMY--PSMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
...++.|...|.+.+++.+|.++|.+... .|.. -...+|..|...|.+.|+++.|.++.+.+.
T Consensus 409 --------~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 --------GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11378899999999999999999887543 2322 235678899999999999999999988876
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.01 E-value=4.1e-05 Score=82.17 Aligned_cols=318 Identities=9% Similarity=-0.069 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 394 HEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSEL 473 (806)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 473 (806)
..|+..+++..+..-. +..+|+.|- .....|++.-+...|-.-.... +....+|..+--.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLG-Vlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALG-VLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHH-Hhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 4677777776654222 445555544 4466677777777776655543 456667888888888999999999999988
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHhHHHHHHHHHccCCcH---------HHHHHH
Q 047492 474 SRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE----NGHKPTRALHRAVIRCLCNMETPA---------KQFLQL 540 (806)
Q Consensus 474 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~---------~~~~~~ 540 (806)
....+. |...|-.........|+.-++..+|..--+ .|--|+..-+.....-....|+.. ..+...
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 877665 777787777777778888888888876221 233343322222222222222211 112223
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC-CCccCcchhHHHHHHHHhhhCCCCchhHHH----HHHH
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS-GLVPQLGSNILMLQSYLKRKNGIPRKLYNT----LIVG 615 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----li~~ 615 (806)
++....+.+.+...|.+.....-+.+.+.+|.++..+.... ..+-+..+ |+. +.+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sq-------------------ynvak~~~gRL 1016 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQ-------------------YNVAKPDAGRL 1016 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------hhhhhhhhhhh
Confidence 45556677777778888877777777777777776664421 01111222 332 2233
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCC-chhHHHHHHHhhccccHH
Q 047492 616 LCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR-QVT-SFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 616 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~ 693 (806)
++..|.++.|..-+...-. ..+......-+ +..-.|+++++.+.|++.....- ..+ +.....++......+..+
T Consensus 1017 ~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~ 1092 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKN 1092 (1238)
T ss_pred hhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccch
Confidence 4445666655443322110 11111111111 11335777888888877754321 112 234444555666677777
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
.|...+-+....-+++..+.-.|...+.--.+-+....+.+++.+
T Consensus 1093 ~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~k 1137 (1238)
T KOG1127|consen 1093 DAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEK 1137 (1238)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 777777777777777777666665555444444443444444433
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=6.9e-06 Score=85.21 Aligned_cols=307 Identities=11% Similarity=0.010 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCC-CCChhh-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHH---
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGM-DLDDYA-YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI--- 205 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 205 (806)
...|..+...+...|+++.+...+....+... .++... .......+...|++++|.+++++..+..+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 33444555555556667776666666543311 112211 1111223445677777777777777765545444432
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG 285 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (806)
........+....+.+.++.. ....+........+...+...|++++|.+.+++.... .+.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 111122234445555555441 1111122334445556677788888888888877764 2333456667777777788
Q ss_pred CHHHHHHHHHhhhhcCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHHcCChH
Q 047492 286 RLDLALEFLKSKNSLEGYVPEV--FRFNFLVSRLLKENRLMEVFDLFMDMKEGQI-SPDGVTM-N--TVLCFFCKAGMVD 359 (806)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~-~--~ll~~~~~~g~~~ 359 (806)
++++|..++++........++. ..|..+...+...|+.++|..++++...... .+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 8888888877765422212222 2344566777788888888888887654321 1111111 1 2222233334333
Q ss_pred HHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC------CHHHHHHHHH--HHHhcCC
Q 047492 360 VAIEL---YKSRSEFGL-SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFP------GKKTLSILAD--ALCRDGK 427 (806)
Q Consensus 360 ~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~--~~~~~g~ 427 (806)
.+.+. ......... ............++...|+.+.|..+++.+......+ ...+-..++. ++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33222 111111100 0111111234556667777777777777765422110 0011111222 2345566
Q ss_pred hhHHHHHHHHHHH
Q 047492 428 FEQMKDLVIFALE 440 (806)
Q Consensus 428 ~~~a~~~~~~~~~ 440 (806)
.++|.+.+.....
T Consensus 323 ~~~A~~~L~~al~ 335 (355)
T cd05804 323 YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.9e-05 Score=71.67 Aligned_cols=268 Identities=10% Similarity=-0.008 Sum_probs=141.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 340 PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGI-VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSIL 418 (806)
Q Consensus 340 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (806)
-|......+.+.+...|+.++|+..|+..... .|+.. ......-.+.+.|+.+....+...+....- -+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 34555566666666666666666666665432 23221 111112223445566655555555543210 011122222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 047492 419 ADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRA 498 (806)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 498 (806)
...+....+++.|..+.++.++.+ +.+...|-.--..+...|+.++|.-.|+......+. +..+|.-|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchH
Confidence 223334455666666666555543 223333333334455666666666666665544322 556677777777777776
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHH-HHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHH
Q 047492 499 DIAARLLVEMEENGHKPTRALHRAVI-RCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYEL 577 (806)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 577 (806)
.+|.-+-+..... +..+..+...+- ..|.......+.+..+.+......+......+.+...+...|+.+++..+++.
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 6666555544331 122222222221 12222222234455555554554455555566667777777788888887777
Q ss_pred HHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 578 MQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 578 m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
.... .||..- .+.|.+.+...+.+.+|+..|.....
T Consensus 464 ~L~~--~~D~~L-------------------H~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLII--FPDVNL-------------------HNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhh--ccccHH-------------------HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6632 455443 67777777777777888877777665
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=7.5e-07 Score=88.47 Aligned_cols=217 Identities=15% Similarity=0.046 Sum_probs=113.6
Q ss_pred ChhhHHHHHHHHhhcC-CCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHH
Q 047492 146 KPDIALHLFGKMRFQG-MDLD--DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 146 ~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 222 (806)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+..+.+...|+.+...+...|++++|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666655321 1221 234555555666667777777777777766666666777777777777777777777
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCC
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEG 302 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 302 (806)
|+...+..+ .+..+|..+...+...|++++|.+.|+..... .|+..........+...++.++|.+.|.+... .
T Consensus 121 ~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 121 FDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 777665543 23455566666666677777777777666543 22221111111222344566666666654332 1
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG---QI--S-PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 303 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
..++...+ .+.. ...|+...+ +.++.+.+. .+ . .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12222211 1221 223333332 233333321 00 0 122356666666666777777777776666543
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.86 E-value=1.5e-06 Score=86.23 Aligned_cols=162 Identities=9% Similarity=-0.023 Sum_probs=75.1
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
++..|+.+...+...|++++|...|++..+ +.|+... +|..+..++...|++++|.+.|+
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~------------------a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNY------------------AYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555566666666666666666666653 3344332 25555555666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh-------
Q 047492 631 EMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML------- 703 (806)
Q Consensus 631 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 703 (806)
...+ ..|+..........+...+++++|.+.++...... .++...+ .+. ....|+...+ ..+..+.
T Consensus 157 ~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNT 229 (296)
T ss_pred HHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcH
Confidence 6665 23332211111122334555666666665443221 1221111 111 1112222111 1111111
Q ss_pred hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 704 INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.-.+.....|..+...|...|+.++|+..|+++.+.
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111222334555666666666666666666666654
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=1.5e-06 Score=77.12 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (806)
|...|++..|..-+++.++..+.+..++..+...|-+.|+.+.|.+.|++..+..+ .+..+.|.....+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCChHHHH
Confidence 33444444444444444444433444444444444444444444444444443332 22333344444444444444444
Q ss_pred HHHHHhh
Q 047492 256 KLLEDFK 262 (806)
Q Consensus 256 ~~~~~~~ 262 (806)
..|++..
T Consensus 124 q~F~~Al 130 (250)
T COG3063 124 QQFERAL 130 (250)
T ss_pred HHHHHHH
Confidence 4444433
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.7e-06 Score=81.16 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=64.4
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
+....|+++.|+..|.+..... +++.+.|..-..+|+..|++++|.+--.+-.+..+.-+..|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3445677777777777766553 225566666667777777777776666666665555555666666666677777777
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHH
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDAL 245 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (806)
..-|.+-++... .+...++-+.+++
T Consensus 90 ~~ay~~GL~~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCC-chHHHHHhHHHhh
Confidence 777766665543 3344455555444
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=0.00064 Score=80.45 Aligned_cols=341 Identities=10% Similarity=-0.027 Sum_probs=172.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCC-----CCCcc--cHHHHHHH
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGY-----VPEVF--RFNFLVSR 316 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~--~~~~li~~ 316 (806)
.....|+++.+...++.+... ....+..........+...|+++++...+........- .+... ....+-..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344567777777776665322 11111122233334445677778877777665431110 01111 11112233
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDG----VTMNTVLCFFCKAGMVDVAIELYKSRSEF----GL-SPNGIVYNYLINSL 387 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~ 387 (806)
+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |- .....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 45677777777777766552111111 22344445556677777777777665431 10 01112344445566
Q ss_pred HcCCChhHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 047492 388 CGDGSTHEAYEVLKNSID----HGLF--P-GKKTLSILADALCRDGKFEQMKDLVIFALERN--IKL--RDVTYDKFISA 456 (806)
Q Consensus 388 ~~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~ 456 (806)
...|++++|...+++..+ .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 677777777777666543 1211 1 12223334445555677777777766654421 111 12233334455
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVA-SENTY-----IQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNM 530 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (806)
+...|+.+.|...++......... ....+ ...+..+...|+.+.|...+........ ....
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~------------ 688 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNH------------ 688 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccch------------
Confidence 566677777766665553321100 00000 0111233345666666665544322100 0000
Q ss_pred CCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHHHhhhCCCCc
Q 047492 531 ETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSYLKRKNGIPR 606 (806)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~~~~~~~~~~ 606 (806)
.....+..+..++...|+.++|...+++.... |..++..
T Consensus 689 -------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a------------------ 731 (903)
T PRK04841 689 -------------------FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN------------------ 731 (903)
T ss_pred -------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH------------------
Confidence 00111345666778889999999999887653 2221111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
.+...+..++.+.|+.++|...+.+..+.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12556777888999999999999998874
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=7.8e-06 Score=72.68 Aligned_cols=200 Identities=11% Similarity=-0.054 Sum_probs=140.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHH
Q 047492 202 TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNL 281 (806)
Q Consensus 202 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (806)
+...|.-.|...|+...|..-+++.++.++ .+..+|..+...|.+.|..+.|.+.|+..... .+-+-.+.|..---+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 445566778888888888888888888765 45567888888888888888888888887653 122334566666667
Q ss_pred HHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHH
Q 047492 282 VRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVA 361 (806)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 361 (806)
|..|++++|...|++........--..+|..+.-+..+.|+.+.|...|++-.+... -...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 778888888888887776444333456677777777777888888888877776532 2345556666777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 362 IELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH 406 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 406 (806)
...++.....+. ++..+.-..|+.--+.|+.+.+.+.=.++...
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777766654 66666666677666777777766665555543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.3e-05 Score=73.68 Aligned_cols=202 Identities=16% Similarity=0.134 Sum_probs=140.8
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 304 VPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYL 383 (806)
Q Consensus 304 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (806)
.....-+++.+..+++..++++|++++..-.+... .+....+.+..+|....++..|-..|+++... .|...-|...
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 33344577778888888899999999887766532 26667778888888999999999999988764 4666555433
Q ss_pred -HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047492 384 -INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADA--LCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460 (806)
Q Consensus 384 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 460 (806)
...+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..+++.....| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 45677888899999999888754 222222222222 235678888888887754322 333444444445688
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047492 461 NKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKP 515 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 515 (806)
|+.+.|.+-|+...+.+---....|+.-+. ..+.|+++.|++...+++++|++-
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence 999999999998877554435566775554 456789999999999999988754
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=0.0002 Score=67.50 Aligned_cols=331 Identities=11% Similarity=0.051 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV---SRLLKENRLMEVFDLFMDMKEGQISPDGVTMN 346 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 346 (806)
++.-...+-+.+...|++..|+..|....+ .|...|.++. ..|...|+..-|+.=+....+ .+||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR 109 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH
Confidence 344455566677777777777777776653 3333444433 456666777777766666665 345532211
Q ss_pred H-HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047492 347 T-VLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD 425 (806)
Q Consensus 347 ~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 425 (806)
. --..+.+.|.++.|..=|+.+.+.. |+..+ ...++.+.-..++-+. ....+..+...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcC
Confidence 1 1233556777777777777766643 32111 0111111111111111 11223334556
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLL 505 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 505 (806)
|+...|+.....+++.. +.+...|..-..+|...|++..|+.=++...+.... +..++..+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77777777777777764 567777777777888888888777666665554333 5556666666777777877777777
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCcc
Q 047492 506 VEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVP 585 (806)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 585 (806)
++..+ +.||...+-..-..+-+..+ .++. +......++|.++++-.+...+.. |
T Consensus 247 RECLK--ldpdHK~Cf~~YKklkKv~K-------~les---------------~e~~ie~~~~t~cle~ge~vlk~e--p 300 (504)
T KOG0624|consen 247 RECLK--LDPDHKLCFPFYKKLKKVVK-------SLES---------------AEQAIEEKHWTECLEAGEKVLKNE--P 300 (504)
T ss_pred HHHHc--cCcchhhHHHHHHHHHHHHH-------HHHH---------------HHHHHhhhhHHHHHHHHHHHHhcC--C
Confidence 77765 56665443222222111111 0000 112234577888888888777543 3
Q ss_pred CcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHH
Q 047492 586 QLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-MECYEELIKLLCSTKNYDMVVGVM 664 (806)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 664 (806)
....+ ....+..+-.++...|++.+|++...+.++ +.|+ ..++.--..+|.-..++++|+.-+
T Consensus 301 ~~~~i--------------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 301 EETMI--------------RYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred cccce--------------eeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 31110 001255566777788999999999999887 6665 777777788888888999999999
Q ss_pred HHHHhCCC
Q 047492 665 NHLEGHGR 672 (806)
Q Consensus 665 ~~~~~~~~ 672 (806)
+...+.+.
T Consensus 365 e~A~e~n~ 372 (504)
T KOG0624|consen 365 EKALELNE 372 (504)
T ss_pred HHHHhcCc
Confidence 98887653
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.3e-08 Score=61.99 Aligned_cols=33 Identities=39% Similarity=0.544 Sum_probs=28.3
Q ss_pred cCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 773 KGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 773 ~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+|+.||..||++++.+||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478888888888888888888888888888887
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=6.3e-05 Score=78.05 Aligned_cols=205 Identities=9% Similarity=-0.038 Sum_probs=93.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC-CC--HHHHHHHHHHHHh
Q 047492 418 LADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV-AS--ENTYIQLIHGFNK 494 (806)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~ 494 (806)
+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++........ ++ ...|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555543 333444455555555555555555555554443221 11 1223345555555
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHhH-H--HHHHHHHccCC--cHHHHHHHHHhHhhCC--CCChhhHHHHHHhhhcCC
Q 047492 495 SNRADIAARLLVEMEENGH-KPTRALH-R--AVIRCLCNMET--PAKQFLQLLNMQLSHQ--ETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 566 (806)
.|++++|..++++...... .+..... + .++..+...+. .......+........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 6666666666665543211 1111111 1 11111111221 0111111111111111 111122224566778889
Q ss_pred ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 567 RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+.+.|..+++.+......++..... .......-....++...|++++|.+.+.....
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQP-----------ARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhh-----------HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999987633221000000 00001122333445678888888888877665
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=1.1e-06 Score=85.71 Aligned_cols=248 Identities=13% Similarity=0.075 Sum_probs=139.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHH
Q 047492 245 LCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 324 (806)
+.-.|.+..++.-.+ .... ....+.....-+.+++...|+.+.++.- +.. +-.|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~--~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVLSE---IKK--SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-T--TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHHHH---hcc--CCChhHHHHHHHHHHHhCccchH
Confidence 445566666665444 2222 2222334455566677777776654432 221 12455555544444443334445
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 325 EVFDLFMDMKEGQISP-DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNS 403 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 403 (806)
.++.-+++.......+ +.........++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444333222 2222222224455667788777776532 35566666777888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC
Q 047492 404 IDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV 479 (806)
Q Consensus 404 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 479 (806)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....++.
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 7642 33444445554432 23577888888886554 4677777788888888888888888888877666554
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 047492 480 ASENTYIQLIHGFNKSNRA-DIAARLLVEMEE 510 (806)
Q Consensus 480 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 510 (806)
++.+...++-.....|+. +.+.+++.+++.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666766 556677777765
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=0.00018 Score=72.36 Aligned_cols=377 Identities=14% Similarity=0.094 Sum_probs=203.6
Q ss_pred HHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCc
Q 047492 104 KLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCF 182 (806)
Q Consensus 104 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 182 (806)
.+....|+++.+...+-....-. +++...|+--..+|++.|++++|+.=-.+-.+. .|+ +..|+..-.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45677899999999988877754 558999999999999999999998877777665 565 34888888899999999
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHH------HHhHhCC---CCCCHHhHHHHHHHHHhc-----
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYF------QQLVSGR---ECVSGFMIGIVVDALCKN----- 248 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~------~~~~~~~---~~~~~~~~~~li~~~~~~----- 248 (806)
++|+.-|.+-++..+.+...++.+..++.... .+.+.| ....... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999998888889998888872111 111111 1111000 000111222222222111
Q ss_pred -----CCHHHHHHHHHHhhhC----CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCC--C----------c
Q 047492 249 -----SRFEQAGKLLEDFKDR----DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVP--E----------V 307 (806)
Q Consensus 249 -----g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~----------~ 307 (806)
.++..|...+...... .+..+.. ....+. ..+. .+.++ | .
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~-----------~~~~p~------~~~~--~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILA-----------SMAEPC------KQEH--NGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCC-----------CCCCcc------cccC--CCCCccchhHHHHHHHHhh
Confidence 0111111111100000 0000000 000000 0000 00000 0 0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH-----
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY----- 382 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----- 382 (806)
.-...+.++..+..+++.+++-+....... -+..-++..-.+|...|.+......-....+.|.. ...-|+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 113344555666667777777777666543 34455555666667666666655555554443311 1112222
Q ss_pred --HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-------------------------HHHHHHhcCChhHHHHHH
Q 047492 383 --LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSI-------------------------LADALCRDGKFEQMKDLV 435 (806)
Q Consensus 383 --li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------------------------ll~~~~~~g~~~~a~~~~ 435 (806)
+-.+|.+.++++.++..|.+.......|+...-.. -...+.+.|++..|..-+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 22345556667777777777655444443322111 122344556666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 436 IFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 436 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.+++... +-|...|..-.-+|.+.|.+..|.+=.+...+.++. ....|..-..++....++++|++.|.+..+
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655 455556666666666666666666655555554332 333344444444445556666666666555
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=2.7e-06 Score=82.99 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 310 FNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385 (806)
Q Consensus 310 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 385 (806)
....+..+.+.++.+.|.+.++.|.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~ 209 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 3334444455555555555555554421 12 222222222221 12344455555544332 2344444444444
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 047492 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF-EQMKDLVIFAL 439 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 439 (806)
+....|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+.+.++.
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 444445555554444444433222 333333334433444433 33334444433
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=9.6e-06 Score=81.92 Aligned_cols=258 Identities=11% Similarity=0.045 Sum_probs=148.6
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
+.+.|++.+|.-.|+..++.++. +...|..|......+++-..|+..+++..+ +.|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~-------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPT-------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc--------------------
Confidence 34556666666666666666555 666666666666666666666666666655 3443
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
|..+.-.|.-.|...|.-.+|++.+++..... |. |..+..+-
T Consensus 352 --------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~----------------------y~~l~~a~ 393 (579)
T KOG1125|consen 352 --------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PK----------------------YVHLVSAG 393 (579)
T ss_pred --------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cc----------------------chhccccC
Confidence 33334444555556666666777776665432 21 11110000
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHH
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAW 696 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 696 (806)
..+++..- +-.++...+..+-. .+++.....+..+|+-+...|.-.|.-.|+++.|.
T Consensus 394 -~~~~~~~~----------~s~~~~~~l~~i~~------------~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 394 -ENEDFENT----------KSFLDSSHLAHIQE------------LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred -ccccccCC----------cCCCCHHHHHHHHH------------HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 00000000 01122222222211 12222233333455555555555566666666666
Q ss_pred HHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh-hcHHHHHHHHHHHH---
Q 047492 697 IRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV-SEIDHACELFNRMR--- 771 (806)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~-g~~~~A~~~~~~m~--- 771 (806)
..|+.++...|.|..+||-|..+++...+.++|+..+.++++. .|+ +.++-.|.-.|.. |.+++|.+.|-...
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 6666666667788888999999999999999999999999985 444 4444445556767 99999988776644
Q ss_pred HcCC------CCChhhHHHHHhhhhccCCHHHHHH
Q 047492 772 RKGY------EPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 772 ~~g~------~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+++. .++..+|.+|-.++.-.++.|-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 3322 2334578887777777777764443
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00094 Score=67.29 Aligned_cols=150 Identities=9% Similarity=0.092 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CchhHHHHHHHhhccccHHHHHHHH
Q 047492 622 ANLAWGFMREMRHN-GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-TSFIGNTLLLHALKTRDLYEAWIRL 699 (806)
Q Consensus 622 ~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 699 (806)
.+....+++++... ..+|+. +|..+++..-+..-++.|..+|.++.+.+..+ ++++.++++..++ ++|...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 45556667776653 345554 46778888888889999999999999998877 7888888887655 57889999999
Q ss_pred HhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 700 RGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+--....+.++.-....++.+..-++-..|..+|++....++++| ...|+.+|.-=.. |+..-++++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999988888888889999999999999999999999999876665 5789999988888 9999999998887754
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=0.00022 Score=67.22 Aligned_cols=327 Identities=10% Similarity=0.017 Sum_probs=180.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHH---HHHHhcCCcchHHHHHHHHHhcCCCCccchHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLL---NALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (806)
++.-.--+-..+..+|.+.+|+.-|....+. |+..|.++. ..|...|....|+.-+..+.+..+.-..+...-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 3444444555666677777777777777654 444444443 346666766666666666665533211222223
Q ss_pred HHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCC
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
...+.+.|.+++|..=|+.+++....... ...++.+.-..++-. .....+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~-----------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHW-----------------VLVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHH-----------------HHHHHHHHHhcCCc
Confidence 34456677777777777777665542111 011111110111111 12233444555667
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYK 366 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 366 (806)
...|+.....+.+ -.+.|...|..-..+|...|+...|+.=++..-+.. ..++.++--+-..+...|+.+.++..++
T Consensus 171 ~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 171 CQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777776666653 234566666666677777777777766555544432 1244455555566666777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047492 367 SRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 367 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (806)
+..+. .||...+-.. | .++.+..+.++.|.+ ....+++.++.+-.+...+......
T Consensus 248 ECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccc
Confidence 76653 3554322111 1 112222222222221 2234555555555555555442222
Q ss_pred HH---HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 447 DV---TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 447 ~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.. .+..+-.++...|++-+|++...++.+..+. |..++.--..+|.-...++.|+.-|+...+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22 3344556666778888888888887766544 677777778888888888888888888776
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.59 E-value=0.0011 Score=66.83 Aligned_cols=212 Identities=11% Similarity=0.105 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 428 FEQMKDLVIFALERNIKLRDVTYDKFISALCKAN---KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
.+++..+++...+.-..-+..+|..+...=-..- +.+.....+++.......--.-+|..+++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455666665554433334444444433221111 2455556666655433222334688888888888889999999
Q ss_pred HHHHHHCCCCC-CHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC
Q 047492 505 LVEMEENGHKP-TRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 505 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 583 (806)
|.+..+.+..+ +...+++++..+|.... ..+...++......+.++.--...++-+.+.++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~--~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDK--ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCCh--hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999988777 67777888888887665 5666777777777777777778888888888888899999999887766
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChh
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN---GMYPSMECYEELIKLLCSTKNYD 658 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~ 658 (806)
.|+... ..|..++.-=..-|+...+.++-+++... ...+...+-..+++-|.-.+.+.
T Consensus 467 ~~~ks~-----------------~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 467 SADKSK-----------------EIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ChhhhH-----------------HHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 655432 34888888888888888888887776542 12222233344555555555443
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=0.00021 Score=84.55 Aligned_cols=337 Identities=10% Similarity=-0.012 Sum_probs=181.4
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC----Cc-----cchHHHHHHhh
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE----ND-----VTRTIMLKCLC 211 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~-----~~~~~li~~~~ 211 (806)
....|.+..+..+++.+.......++.........+...|+++++..++......-.. .. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666666665532211112222233334445667777777777665433110 01 11222334455
Q ss_pred ccCCHHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCcchhhHHHHHHHHHH
Q 047492 212 KQKKIDEAVEYFQQLVSGRECVS----GFMIGIVVDALCKNSRFEQAGKLLEDFKDRD----DVVKLEKAYDVWLRNLVR 283 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~li~~~~~ 283 (806)
..|++++|...++...+.....+ ....+.+...+...|++++|...+++..... .......++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67777777777777654311111 1234555566667777777777776654210 111122344555666777
Q ss_pred cCCHHHHHHHHHhhhhc---CCCC--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--ChhhHHHHHHHHH
Q 047492 284 AGRLDLALEFLKSKNSL---EGYV--P-EVFRFNFLVSRLLKENRLMEVFDLFMDMKEG--QISP--DGVTMNTVLCFFC 353 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~--~~~~~~~ll~~~~ 353 (806)
.|++++|...+++.... .+.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 77777777776654331 2211 1 2233444455566678888887777765442 1112 2333444555667
Q ss_pred HcCChHHHHHHHHHHHhC----CCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 047492 354 KAGMVDVAIELYKSRSEF----GLSPNGIVY--NYLINSLCGDGSTHEAYEVLKNSIDHGLFPG---KKTLSILADALCR 424 (806)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~----~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 424 (806)
..|+.+.|.+.+...... +........ ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 778888888777776431 111111011 1122444557788888887766543221111 1113455666777
Q ss_pred cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 425 DGKFEQMKDLVIFALER----NIKL-RDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
.|+.++|...+...... |... ...+...+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888776553 3222 12355566677788888888888888877654
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=9.1e-08 Score=58.29 Aligned_cols=32 Identities=34% Similarity=0.735 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 372 GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNS 403 (806)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 403 (806)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=3.4e-06 Score=87.36 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=126.2
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
-...-..+...+.+.|-..+|..+|++.. .|.-.|.+|...|+.++|..+..
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle----------------------------mw~~vi~CY~~lg~~~kaeei~~ 448 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE----------------------------MWDPVILCYLLLGQHGKAEEINR 448 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH----------------------------HHHHHHHHHHHhcccchHHHHHH
Confidence 33334455556666777777777777664 15666667777776666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 631 EMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 631 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
.-.+ -+|+...|..+.+......-++.|.++.+..... .-..+....+..+++.++.+.++...+-.|-..
T Consensus 449 q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 449 QELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred HHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 6555 3566666666666555555566666665554322 111111122335666666666666666666666
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
.+|..+..++.+.+++..|.+.|...... -+.+...||.+-.+|.+ |+-.+|...+++...-+. -+-..|...+...
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvs 597 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVS 597 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhh
Confidence 66666666666666666666666666653 23334566666666666 666666666666665552 2334455555556
Q ss_pred hccCCHHHHHHHHHhh
Q 047492 790 YNCLRTDEAERRLEEM 805 (806)
Q Consensus 790 ~~~g~~~eA~~~l~~m 805 (806)
.+-|.+++|++...+|
T Consensus 598 vdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 598 VDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhcccHHHHHHHHHHH
Confidence 6666666666665554
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.51 E-value=0.0031 Score=67.76 Aligned_cols=163 Identities=14% Similarity=0.034 Sum_probs=88.4
Q ss_pred HHHHHHHHHccCCcHHHHHH--HHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHH
Q 047492 520 HRAVIRCLCNMETPAKQFLQ--LLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSY 597 (806)
Q Consensus 520 ~~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 597 (806)
.+.++..+.+.++...-... +++......+.|..+--.+|+.|.-.|-...|.++|+.+--..+.-|...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg-------- 510 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG-------- 510 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch--------
Confidence 34555666666664433322 25556666677777777888888888888888888887765566555433
Q ss_pred HhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH---HHHHhCCCCC
Q 047492 598 LKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVM---NHLEGHGRQV 674 (806)
Q Consensus 598 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~ 674 (806)
| .+..-+...|++..+...++....-=-..-..+-. +|....+.|.+....++. +++.......
T Consensus 511 -----------h-~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~ 577 (932)
T KOG2053|consen 511 -----------H-LIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKW 577 (932)
T ss_pred -----------H-HHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHH
Confidence 2 23344555667766666665544310000011111 222334556665554443 2222222222
Q ss_pred CchhHHHHHHHhhccccHHHHHHHHHhhh
Q 047492 675 TSFIGNTLLLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 675 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 703 (806)
...+-+..+...+..++...-...+..+.
T Consensus 578 a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 578 ACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 33445555555666666666666666554
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0033 Score=67.57 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=78.0
Q ss_pred HhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHH--HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 142 ALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNAL--VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 142 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
...+++.+|+...+++.+. .|+. .|..++.++ .+.|..++|..+++.....+..|..|...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4567888888888888765 4443 344555554 4688888888888777776667777888888888888888888
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
..+++...... |+......+..+|.+-+.+.+
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 88888887655 446666667777777766644
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=3.8e-05 Score=77.76 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=156.8
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047492 353 CKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (806)
.+.|++.+|.-.|+...+.. +-+...|..|-..-...++-..|+..+++..+.... |....-.|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45566666666666655432 234456666666666666666666666666655432 4455555556666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHH-----HH--HHHHhcCChhHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 433 DLVIFALERNIKLRDVTYDK-----FI--SALCKANKVEVGYLIHSELSRM-NKVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~-----ll--~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
..++..+....+ -...-.. .. ..+.....+....++|-++... +..+|+..+..|.-.|-..|++++|.+.
T Consensus 374 ~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 666655443210 0000000 00 0111111223344455554443 3346888888999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc
Q 047492 505 LVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 584 (806)
|+.... ++|+ |..+||-|...++...+.++|...|.+.. .++
T Consensus 453 f~~AL~--v~Pn----------------------------------d~~lWNRLGAtLAN~~~s~EAIsAY~rAL--qLq 494 (579)
T KOG1125|consen 453 FEAALQ--VKPN----------------------------------DYLLWNRLGATLANGNRSEEAISAYNRAL--QLQ 494 (579)
T ss_pred HHHHHh--cCCc----------------------------------hHHHHHHhhHHhcCCcccHHHHHHHHHHH--hcC
Confidence 998876 4554 56679999999999999999999999999 568
Q ss_pred cCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHHcCC
Q 047492 585 PQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH---NG------MYPSMECYEELIKLLCSTK 655 (806)
Q Consensus 585 p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g------~~p~~~~~~~l~~~~~~~g 655 (806)
|+.+. +...|.-.|...|.+++|.+.|-..+. .+ ..++...|.+|=.++.-.+
T Consensus 495 P~yVR------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 495 PGYVR------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred CCeee------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 88765 355677889999999999998877554 21 1223345666555555566
Q ss_pred ChhHHHH
Q 047492 656 NYDMVVG 662 (806)
Q Consensus 656 ~~~~A~~ 662 (806)
+.|.+.+
T Consensus 557 ~~D~l~~ 563 (579)
T KOG1125|consen 557 RSDLLQE 563 (579)
T ss_pred CchHHHH
Confidence 5554443
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=3.7e-05 Score=79.91 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
..+...+.+.|-...|+.+|++.. .|.-++.+|+..|+..+|..+..+-.+ ..|++..|..+.+......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 344555555666666666666543 344455556666666666665555554 3445555555555554444
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
-+++|.++.+....+ .-..+.......++++++.+.|+.-...+ +-...+|-..-.+..+.++++.|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 455555555443322 11111111222455555555555433321 112234444444444555555555555
Q ss_pred HhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 295 KSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
..... ..|| ...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 543 ~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 54432 2232 3445555555555555555555555555444 2233333333444444455555555544443
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=2.2e-05 Score=75.72 Aligned_cols=178 Identities=8% Similarity=-0.049 Sum_probs=114.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNT 681 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 681 (806)
.+..+...+...|++++|...|+++... .|+ ...+..+..++...|++++|...++.+.+........ .+..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 4677888899999999999999999874 343 2456777888999999999999999998775433221 3344
Q ss_pred HHHHhhcc--------ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHH
Q 047492 682 LLLHALKT--------RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLR 753 (806)
Q Consensus 682 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 753 (806)
+...+... |+...|.+.++.+....|.+...+..+...... ..... .....+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-----------~~~~~-------~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-----------RNRLA-------GKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-----------HHHHH-------HHHHHHHH
Confidence 44444433 677778887777776666655444333211000 00000 00113344
Q ss_pred HHhh-hcHHHHHHHHHHHHHcCC-CC-ChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 754 RLSV-SEIDHACELFNRMRRKGY-EP-DQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 754 ~~~~-g~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
.|.. |++++|+..+++..+... .| ....+..+..++.+.|++++|..+++.+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666 788888877777775522 12 3456667777777888888887777654
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=6.4e-05 Score=83.64 Aligned_cols=230 Identities=7% Similarity=-0.012 Sum_probs=177.5
Q ss_pred hhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC-CCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChH
Q 047492 545 LSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS-GLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKAN 623 (806)
Q Consensus 545 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 623 (806)
....+.....|-..|......++.++|++++++.... ++.-...-.+ .|.+++..-...|.-+
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLN----------------iWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLN----------------IWIAYLNLENAYGTEE 1514 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHH----------------HHHHHHhHHHhhCcHH
Confidence 3444555667888888888999999999999987742 2111111100 2666777666777778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh
Q 047492 624 LAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 703 (806)
...++|++..+. .-....|..|...|.+.+.+++|.++++.|.+.-- ....+|...+..+++..+-++|..++.++.
T Consensus 1515 sl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1515 SLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888999998873 23345688899999999999999999999987643 666788888899999999999999999999
Q ss_pred hccCc--chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 704 INEQS--KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 704 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
...|. ......-.+..-.++|+.+++..+|+..... .|.-...|+..|+.-.+ |+.+.+..+|++....++.|-..
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 87777 5556677778888999999999999999886 46677889999999999 99999999999999999887653
Q ss_pred --hHHHHHhhhhccCC
Q 047492 781 --TFDILKCGLYNCLR 794 (806)
Q Consensus 781 --~~~~l~~~~~~~g~ 794 (806)
.|..++.-=...|+
T Consensus 1671 KfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 44445443344455
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=4e-05 Score=73.96 Aligned_cols=146 Identities=13% Similarity=-0.027 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchh---hHH
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKIS---LLG 714 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 714 (806)
....+......+...|++++|...++++........ ...+..+...+...|+.++|...++++....|.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455667777888899999999999999877653221 134566677888889999999999998877665554 455
Q ss_pred HHHHhhhcc--------ccchhhHHHHHHHHHcCCCCCh-hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 715 QLIGVFSGC--------IKVSQDIEGLQKMIEQCFPLDT-YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 715 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
.+..++... |+.++|++.++++.+. .|+. ..+..+...... +.... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~------------------~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAG------------------KELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHH------------------HHHH
Confidence 555555543 7778888888888875 3333 333322211111 11110 1124
Q ss_pred HHhhhhccCCHHHHHHHHHhh
Q 047492 785 LKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 785 l~~~~~~~g~~~eA~~~l~~m 805 (806)
+...+.+.|++++|...+++.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHH
Confidence 556678889999888887753
No 117
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00024 Score=70.50 Aligned_cols=213 Identities=9% Similarity=-0.033 Sum_probs=121.2
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM-KANLAWGFMREMR 633 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~ 633 (806)
+..+-..+...++.++|+.+..++.+ +.|+..+ +|+.-...+...| ++++++..++++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yt------------------aW~~R~~iL~~L~~~l~eeL~~~~~~i 99 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR--LNPGNYT------------------VWHFRRLCLEALDADLEEELDFAEDVA 99 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHH------------------HHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 33344445556667777777777663 3455544 3544444455555 4567777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCh--hHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchh
Q 047492 634 HNGMYPSMECYEELIKLLCSTKNY--DMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKIS 711 (806)
Q Consensus 634 ~~g~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 711 (806)
+... .+..+|..-...+.+.|.. +++..+++.+.+.+. -+...++...+.+...|+.++++..+.++....+.+..
T Consensus 100 ~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 100 EDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 6321 1333454444444455542 556666666665542 23345555555566666777777777777777777777
Q ss_pred hHHHHHHhhhcc---ccc----hhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-h----cHHHHHHHHHHHHHcCCCCCh
Q 047492 712 LLGQLIGVFSGC---IKV----SQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-S----EIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 712 ~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g----~~~~A~~~~~~m~~~g~~p~~ 779 (806)
.|+....++.+. |+. +++++...+++.. .+-|...|+-+...+.. + +..+|...+.+..+.++ .+.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~ 255 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHV 255 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcH
Confidence 776665555433 222 3456666566665 35566677766666655 3 23556666666555332 245
Q ss_pred hhHHHHHhhhhc
Q 047492 780 WTFDILKCGLYN 791 (806)
Q Consensus 780 ~~~~~l~~~~~~ 791 (806)
.....|+..|+.
T Consensus 256 ~al~~l~d~~~~ 267 (320)
T PLN02789 256 FALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHh
Confidence 556667777765
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=7.7e-05 Score=68.14 Aligned_cols=155 Identities=14% Similarity=-0.013 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI 724 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 724 (806)
..+-..+...|+-+....+....... ...|......++......|++..|...++++....|+|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44445555666666666665554322 23344455556666777777777777777777777777777777777777777
Q ss_pred cchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHH
Q 047492 725 KVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 725 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
+.++|...+.+..+. .+-+...+|.|...+.- |+.+.|..++......+.. |..+-..+..+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777775 34455566666666655 7777777777777665433 4444455666777777777777654
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.24 E-value=0.00078 Score=75.49 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE---VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
..|...|....+.++.++|.++.++....-++.-. ...|.++++.-..-|.-+...++|++..+.- -.-..|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 45555555555666666666666655532111111 2344455554445555555555665555421 112345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC
Q 047492 349 LCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLF-PGKKTLSILADALCRDGK 427 (806)
Q Consensus 349 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~ 427 (806)
...|.+.+.+++|-++|+.|.+. +......|...+..+.+..+-+.|..++.+..+.=.+ -........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 55566666666666666665542 1234445555555555555555566655555543111 011223333333345555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC
Q 047492 428 FEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV 479 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 479 (806)
.+.+..+|+..+... +--...|+..++.=.++|+.+.+..+|+.+...+..
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555554443 233345555555555555555555555555555444
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00054 Score=76.01 Aligned_cols=168 Identities=11% Similarity=0.025 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 174 (806)
....+..++..+-..++++.+.++.+..... .+.....|-.+...+.+.++..++..+ .+. +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLI---------------D 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------h
Confidence 4556666666666777777777777755543 233344444444456666665555444 222 1
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA 254 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (806)
......++..+..++..+.. ...+..++..+..+|-+.|+.++|..+++++++.++ -|..+.|.+...|+.. ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 22222233222222223322 223444666777777777777777777777777663 5666777777777777 77777
Q ss_pred HHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 255 GKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
++++.+.... +...+++..+.++|.++..
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHh
Confidence 7776655432 4445556666666666553
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.00078 Score=74.81 Aligned_cols=238 Identities=8% Similarity=-0.009 Sum_probs=145.6
Q ss_pred CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHH
Q 047492 199 NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWL 278 (806)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 278 (806)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+...++.+++..+ .+.. ..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---~~~--------- 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID---SFS--------- 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh---hcc---------
Confidence 4457888888888889999999988876665432 222333333367777776666655 2221 122
Q ss_pred HHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh
Q 047492 279 RNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMV 358 (806)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 358 (806)
...++.-+..+...+.. ..-+...+-.+..+|-+.|+.+++..+++++.+.. +-|+...|.+...|... ++
T Consensus 95 ----~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 ----QNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ----cccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 12222222222222221 12233466777888889999999999999998876 34788888888888888 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (806)
++|++++.+.... +...+++.++.++|.++...... +...+..+++ .+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HH
Confidence 9999988877652 55566777888888877765322 2222222222 22
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 047492 439 LER-NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493 (806)
Q Consensus 439 ~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 493 (806)
... |..--..++-.+...|-+.++++++..+++.+.+.... |.....-++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 211 22223334455556666667777777777777666555 5555555665555
No 122
>PLN02789 farnesyltranstransferase
Probab=98.16 E-value=0.0024 Score=63.46 Aligned_cols=202 Identities=8% Similarity=-0.045 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG-STHEAYEVLKNSIDHGLFPGKKTLSILADALCR 424 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 424 (806)
..+-..+...+..++|+.+..++++.. +-+..+|+.--..+...| ++++++..++++.+...+ +..+|+.--..+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 334444445556666666666666532 122234444434444444 456666666666655433 33444433333334
Q ss_pred cCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 425 DGKF--EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 425 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.|+. +++..+++.+.+.+ +-+..+|+....++...|+++++++.++.+.+.++. |...|+.....+.+.++..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~--- 193 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG--- 193 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc---
Confidence 4432 44555555555544 344555555555555555566666666665555544 4445544443333221100
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcC----CChHHHHHHHHHH
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV----KRPDLARAVYELM 578 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m 578 (806)
+.....++...+........+.|...|+.+...+... ++..+|.+.+.+.
T Consensus 194 --------------------------~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 194 --------------------------GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred --------------------------cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 0000012233333344455566777777777777663 3445677777776
Q ss_pred HH
Q 047492 579 QR 580 (806)
Q Consensus 579 ~~ 580 (806)
..
T Consensus 248 ~~ 249 (320)
T PLN02789 248 LS 249 (320)
T ss_pred hc
Confidence 54
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.0006 Score=62.81 Aligned_cols=119 Identities=9% Similarity=0.053 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHH
Q 047492 390 DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISAL-CKANK--VEVG 466 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 466 (806)
.++.+++...+++..+.... |...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555544322 55566666666666666666666666666654 33555555555543 45555 3666
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 467 YLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
.+++++..+.++. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666555 5666666666666777777777777776653
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0011 Score=60.68 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=142.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCC
Q 047492 243 DALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENR 322 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 322 (806)
+-+.-.|.+..++..-...... +-+...-.-+-++|...|....... +++ .+-.|.......+-.....-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~--~~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIK--EGKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccc--cccCChHHHHHHHHHHhhCcch
Confidence 3344556777666655554432 1233333444555666665443322 221 1112333333333333333444
Q ss_pred HHHH-HHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 047492 323 LMEV-FDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLK 401 (806)
Q Consensus 323 ~~~a-~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 401 (806)
.+.- -++.+.+.......+......-...|++.|++++|++..+.. -+....-.=+..+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 334444444433334343444455678888888888887752 122333333455667778888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 402 NSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 402 ~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
+|.+- -+..|.+.|..++.+ .+....|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88764 255677767766653 24577788888887654 47788888888888888888888888888887776
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 047492 478 KVASENTYIQLIHGFNKSNRA-DIAARLLVEMEE 510 (806)
Q Consensus 478 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 510 (806)
.. ++.+...++-.-...|.. +-..+.+.+++.
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 65 555555454444444443 334455555554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00024 Score=77.98 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=80.1
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (806)
+.++..+..|.....+.|.+++|..+++...+. .|+.. ....+..++.+.+++++|...+++.....+.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 444556666666666666666666666666655 44333 445555566666666666666666666666666666666
Q ss_pred HHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
..++.+.|++++|..+|++....+. .+..++..+...+-+.|+.++|...|+...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666665322 3345555566666666666666666666554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00023 Score=78.18 Aligned_cols=164 Identities=8% Similarity=-0.052 Sum_probs=133.7
Q ss_pred CCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh-hh
Q 047492 90 PHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD-YA 168 (806)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~ 168 (806)
..+.++...+..+.++..+.|.++++..+++..... .|.+......+...+.+.+++++|+..+++.... .|+. ..
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence 356778999999999999999999999999999884 5667888888999999999999999999999987 5654 46
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
.+.+..++.+.|++++|.++|+++...++.+..++..+..++-..|+.++|...|+...+..- +....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~------ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH------
Confidence 666677788999999999999999997777788999999999999999999999999987543 3334554433
Q ss_pred CCHHHHHHHHHHhhh
Q 047492 249 SRFEQAGKLLEDFKD 263 (806)
Q Consensus 249 g~~~~A~~~~~~~~~ 263 (806)
++...-..+++++.-
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 230 VDLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHHHcCc
Confidence 233344455555543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00053 Score=62.81 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=73.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK 215 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 215 (806)
.+-..+.-.|+-+.+..+........ .-|....+.......+.|++..|+..+++.....+++..+|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344444455555444444432221 11333344445555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 216 IDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
+++|..-|.+..+... .+....|.|.-.+.-.|+++.|..++...... -.-|...-..+.......|++++|.++.
T Consensus 150 ~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555544332 22234444444444555555555555544432 1123333444444444455555554443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.0014 Score=65.70 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=62.0
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcc-hhhHHHHHHHHHHcCCHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL-EKAYDVWLRNLVRAGRLDL 289 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 289 (806)
...|++++|+..++.++...+ .|...+....+.+.+.++.++|.+.++.+... .|+ ...+..+..+|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHH
Confidence 344555566666555554322 34444455555555666666666666555543 232 3344445555556666666
Q ss_pred HHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 290 ALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
|+.+++.... ..+-|...|..|..+|...|+..++..-..+.
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6665555542 23344555666666666666655555555544
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.0037 Score=62.69 Aligned_cols=114 Identities=16% Similarity=0.058 Sum_probs=53.5
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChhh-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDYA-YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
+...|++++|+..++.+... .|+... +....+.+.+.++..+|.+.++.+....+........+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 33445555555555555443 333322 222333444455555555555555544443344444444555555555555
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKL 257 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (806)
..+++....... .|...|..|..+|...|+..++..-
T Consensus 394 i~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 394 IRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHH
Confidence 555554444332 3444555555555555554444433
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.06 E-value=8.6e-05 Score=68.36 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=70.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH-hhcccc--HHHH
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH-ALKTRD--LYEA 695 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 695 (806)
.++.+++...++...+.. +.+...|..+...|...|++++|...+++..+.... +...+..+... +...|+ ..+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445566666666655532 335666777777777777777777777777665432 33333333333 234444 3566
Q ss_pred HHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 696 WIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
...++++....|.+...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666555666666666666666666666666666666655
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0028 Score=58.11 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS 392 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 392 (806)
+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 34444455555555555442 233344433333332 22344444444444432 23444444444444444444
Q ss_pred hhHHHHHHHHHHhC
Q 047492 393 THEAYEVLKNSIDH 406 (806)
Q Consensus 393 ~~~a~~~~~~m~~~ 406 (806)
+++|..++++...+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.1e-06 Score=50.86 Aligned_cols=34 Identities=41% Similarity=0.682 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCCh
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~ 779 (806)
.+||++|.+|++ |++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 479999999999 9999999999999999999983
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.002 Score=58.57 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=136.9
Q ss_pred CCChHHHHHHHHHHHH---CC-CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047492 565 VKRPDLARAVYELMQR---SG-LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS 640 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~---~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 640 (806)
..+.++..+++.++.. .| ..|+.-+ .|..++-+....|+.+.|...++.+... ++-+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~------------------l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S 85 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWT------------------LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGS 85 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHH------------------HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCC
Confidence 3577888888888774 23 4444433 3667777777889999999999998875 3222
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
...-..-.-.+...|++++|.++++.+.+.+ +.|..++---+...-..|+..+|++-+.+....++.|...|.-+...|
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2221111223567899999999999999887 344455555555566678888999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-h---cHHHHHHHHHHHHHcC
Q 047492 721 SGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-S---EIDHACELFNRMRRKG 774 (806)
Q Consensus 721 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g---~~~~A~~~~~~m~~~g 774 (806)
...|++++|.--++++.-. .|.++..+..+...+.. | +.+-|.+.|.+..+..
T Consensus 165 ~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999875 34455555666666655 3 4566777787776553
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00047 Score=59.87 Aligned_cols=92 Identities=4% Similarity=-0.082 Sum_probs=54.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.....+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34445555566666666666655544 345555556666666666666666666666655443 5556666666666666
Q ss_pred CHHHHHHHHHHHHH
Q 047492 497 RADIAARLLVEMEE 510 (806)
Q Consensus 497 ~~~~a~~~~~~m~~ 510 (806)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666655
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00028 Score=61.27 Aligned_cols=92 Identities=8% Similarity=-0.096 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR 250 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (806)
....++...|++++|...|+......+.+..++..+..++...|++++|...|+.....++ .+...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555555555555555555555555555555555555555555433 344455555555555555
Q ss_pred HHHHHHHHHHhhh
Q 047492 251 FEQAGKLLEDFKD 263 (806)
Q Consensus 251 ~~~A~~~~~~~~~ 263 (806)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.2e-05 Score=49.57 Aligned_cols=32 Identities=41% Similarity=0.676 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYEP 777 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p 777 (806)
.+||.++.+|++ |+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999 99999999999999999887
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.7e-05 Score=49.33 Aligned_cols=33 Identities=45% Similarity=0.718 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS 640 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 640 (806)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 489999999999999999999999999998887
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=2.5e-05 Score=48.11 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP 639 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 639 (806)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 358889999999999999999999998888877
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00069 Score=58.58 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 493 (806)
....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|..+++...+.++. +...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 34445555566666666666666665554 345556666666666667777777776666655433 5556666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 494 KSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
..|++++|...|+...+ ..|+...
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccch
Confidence 77777777777776666 3444433
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00021 Score=61.81 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=83.6
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC
Q 047492 663 VMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 742 (806)
.++........ +......+...+...|+..+|...++......|.+...+..+...|...|++++|...+++..+. .+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 44555544332 23445556667778888888888888887777778888888888888888888888888888776 35
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHH
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFD 783 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~ 783 (806)
.+...+..+...+.. |++++|...|++..+. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 556677777777777 8888888888877765 34544433
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.00083 Score=68.03 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
....|+..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33445555666677777777777777653 33 33346666666667777777777776543 445566666667777
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
+.++.+.|.++.++.....+. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888887766544 66688888888888888888888877665
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.00051 Score=69.52 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK 215 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 215 (806)
.|+..+...++++.|+.+|+++.+. .|+ ....+++.+...++-.+|..++.+.....+.+...+......+.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3344444455666666666666554 232 333344555555555555555555555444444444444455555555
Q ss_pred HHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 216 IDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
.+.|.++.++..+..+ .+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 250 ~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555554432 233355555555555555555555555443
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0046 Score=56.33 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=136.4
Q ss_pred cCChHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHH
Q 047492 619 AMKANLAWGFMREMRH---NG-MYPSMEC-YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~---~g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 693 (806)
..+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+...- +-+..+...-.-.+-..|...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4567888888888876 35 5666554 5556666778999999999999997764 333333222222344678999
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
+|.+.++......|-+..++---+.+.-.+|+.-+|++.+.+..+. +..|...|--|...|.. |++++|.-.+++|.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888899999999999999988 89999999999999999 999999999999986
Q ss_pred cCCCC-ChhhHHHHHhhhhccC---CHHHHHHHHH
Q 047492 773 KGYEP-DQWTFDILKCGLYNCL---RTDEAERRLE 803 (806)
Q Consensus 773 ~g~~p-~~~~~~~l~~~~~~~g---~~~eA~~~l~ 803 (806)
. .| +...|..+...+.-.| +.+-|.+++.
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 33 4445555555543332 3444444443
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00046 Score=70.12 Aligned_cols=121 Identities=10% Similarity=0.058 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 047492 410 PGKKTLSILADALCRDGKFEQMKDLVIFALER--NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQ 487 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 487 (806)
.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555555555555566666665555543 1222233445666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc
Q 047492 488 LIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNM 530 (806)
Q Consensus 488 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (806)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666666666665555555544
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.0012 Score=57.72 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=54.0
Q ss_pred cCCcchHHHHHHHHHhcCCCCcc---chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDV---TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS--GFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 253 (806)
.++...+...++.+....+.+.. ....+...+...|++++|...|+.+......++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555554443321 233344555555666666666665555442221 1223334455555566666
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLK 295 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (806)
|+..++..... ......+......+.+.|++++|...|+
T Consensus 104 Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65555443221 1222334444445555555555555554
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.00036 Score=70.89 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=73.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMKEG--QISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYL 383 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 383 (806)
+......+++.+....+++++..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344445555555555566666666655544 12222344556777777777777777777666666777777777777
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD 425 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 425 (806)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777776666655555556665555555444
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=6.5e-05 Score=45.06 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCC
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGY 775 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~ 775 (806)
++||+++++|++ |++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 468888888888 888888888888887764
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00097 Score=52.35 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 356 GMVDVAIELYKSRSEFGL-SPNGIVYNYLINSLCGDG--------STHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 356 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
+++...-.+|+.++..|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..||+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 12234455555555555555555555555443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0013 Score=51.65 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHHH
Q 047492 381 NYLINSLCGDGSTHEAYEVLKNSIDHGL-FPGKKTLSILADALCRDGK--------FEQMKDLVIFALERNIKLRDVTYD 451 (806)
Q Consensus 381 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~ 451 (806)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666667999999999999999999 8999999999998876532 334566677777777777777777
Q ss_pred HHHHHHHh
Q 047492 452 KFISALCK 459 (806)
Q Consensus 452 ~ll~~~~~ 459 (806)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.54 E-value=0.0027 Score=55.39 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---ccchH
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMRGFEN---DVTRT 204 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 204 (806)
..|..++..+ ..++...+...++.+... .|+. .+.-.+...+...|++++|...|+.+....+.+ .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555555 477788888888888765 3332 223334456777888899999998888876322 23556
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
.|...+...|++++|...++...... .....+....+.|.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67788888999999999987754333 3445677788899999999999998875
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00012 Score=43.94 Aligned_cols=30 Identities=40% Similarity=0.644 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGM 637 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 637 (806)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 488888888888888888888888887764
No 152
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.12 Score=51.57 Aligned_cols=449 Identities=14% Similarity=0.107 Sum_probs=209.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCc------cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH--HHhcC
Q 047492 178 EQGCFDAVAVVSKQISMRGFEND------VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA--LCKNS 249 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g 249 (806)
+.+++.++.++|..+.+..-.++ ..-+.++++|.. ++++.....+....+... ...|-.+..+ +.+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhh
Confidence 45566666666666655433221 223445555543 345555555555544322 1223333322 34567
Q ss_pred CHHHHHHHHHHhhhCC-CCCc------------chhhHHHHHHHHHHcCCHHHHHHHHHhhhhc---CCCCCCcccHHHH
Q 047492 250 RFEQAGKLLEDFKDRD-DVVK------------LEKAYDVWLRNLVRAGRLDLALEFLKSKNSL---EGYVPEVFRFNFL 313 (806)
Q Consensus 250 ~~~~A~~~~~~~~~~~-~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l 313 (806)
.+.+|.+.+....+.- +..| |...-+..++++...|++.++..+++++... .....+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 7777777776655430 1111 1112234455666677777777666665531 2233566666665
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 047492 314 VSRLLKENRLMEVFDLFMDMKE---GQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD 390 (806)
Q Consensus 314 i~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 390 (806)
+-.+++. .|-++++ ..+-|| |--++-.|.+.=. .++.-.-..+.|.......++....-.
T Consensus 174 vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 174 VLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 4444322 1222211 112222 1112222221100 000000001223333333333332221
Q ss_pred --CChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCh
Q 047492 391 --GSTHEAYEVLKNSIDHGLFPGKK-TLSILADALCRDGKFEQMKDLVIFALERNIKL----RDVTYDKFISALCKANKV 463 (806)
Q Consensus 391 --g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~ 463 (806)
.+..--+++++.-...-+.|+.. ....+...+.. +.+++..+-+.+....+.+ -..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11122223333323333445432 22233333333 4444444444433322111 123566677777777777
Q ss_pred hHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHh-HH---HHHHHHHcc
Q 047492 464 EVGYLIHSELSRMNKVASEN-----TYIQLIHGFNK----SNRADIAARLLVEMEENGHKPTRAL-HR---AVIRCLCNM 530 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~-~~---~ll~~~~~~ 530 (806)
..|.+.+..+.-.++..... +-..+-+..+. .-+...-+.++++..... .|..- .. .-..-+.+.
T Consensus 315 ~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 315 EEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhc
Confidence 77777766665443331100 00111122221 112333444555554432 22211 11 122334556
Q ss_pred CCcHHHHHHHHHhHhhCCCCChhhHHHHHH----hhhc---CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCC
Q 047492 531 ETPAKQFLQLLNMQLSHQETNFQIYNFFID----GAGH---VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNG 603 (806)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 603 (806)
|..++.+..+++....-.+.|...-|.+.. .|.. ...+.+-..+-+-+.+.|+.|-.+...
T Consensus 393 g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~------------ 460 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE------------ 460 (549)
T ss_pred CCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH------------
Confidence 665666777776666666666655444332 2221 123344444444555667777555422
Q ss_pred CCchhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 604 IPRKLYNTLIVG--LCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 604 ~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
..-|.|.+| +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+.
T Consensus 461 ---eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 461 ---EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ---HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 223444444 4568888888776666665 78899999988877888889999999988764
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.49 E-value=0.0017 Score=58.12 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=34.8
Q ss_pred CChhhHHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 340 PDGVTMNTVLCFFCK-----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 340 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
.|..+|..+++.|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 455666666666653 36667777777777788888888888888777654
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00019 Score=55.67 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=56.4
Q ss_pred cccchhhHHHHHHHHHcCCC-CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHH
Q 047492 723 CIKVSQDIEGLQKMIEQCFP-LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+|++++|+.+++++.+.... ++...|-.+..+|.+ |++++|+.++++ ...+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 47788889999998886321 244556667888888 999999999988 322222 23444456888999999999999
Q ss_pred HHHh
Q 047492 801 RLEE 804 (806)
Q Consensus 801 ~l~~ 804 (806)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.2 Score=50.23 Aligned_cols=458 Identities=13% Similarity=0.120 Sum_probs=241.2
Q ss_pred hhccCCHHHHHHHHHHhHhCCCC-C---C-HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHH--H
Q 047492 210 LCKQKKIDEAVEYFQQLVSGREC-V---S-GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNL--V 282 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~-~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~ 282 (806)
+-+.+++.+|.++|.++.+..-. | . ...-+.++++|.- .+.+.....+....+..+.. .|-.+..++ .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s----~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKS----AYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH
Confidence 34678899999999888765321 1 1 2334566777654 45666666666665542322 355555543 4
Q ss_pred HcCCHHHHHHHHHhhhhc-CCCCC------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhH
Q 047492 283 RAGRLDLALEFLKSKNSL-EGYVP------------EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQIS----PDGVTM 345 (806)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~-~~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~ 345 (806)
+.+.+++|++.+....+. .+..+ |...-+..++++...|++.++..++++|...-.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887766542 11111 1112234456777778888877777776654332 567777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSE---FGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
+.++-.++++ .|-++++ ..+-|+ .| -+|-.|.+. +..++.-.=..+.|....+.+++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd--yY-emilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD--YY-EMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH--HH-HHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 7766665543 2222222 122222 22 233333221 11111111112445555666666555
Q ss_pred HhcC--ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhc
Q 047492 423 CRDG--KFEQMKDLVIFALERNIKLRDV-TYDKFISALCKANKVEVGYLIHSELSRMNKVA----SENTYIQLIHGFNKS 495 (806)
Q Consensus 423 ~~~g--~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~ 495 (806)
.-.. +..--.++++.....-+.|+.. +...++..+.+ +.+++..+.+.+......+ -..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 3334455555555555666644 33445555544 5566666555544332211 245788888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHH-------HHHHHHHccCCcHHHHHHHHHhHhhCCCCCh---hhHHHHH---Hhh
Q 047492 496 NRADIAARLLVEMEENGHKPTRALHR-------AVIRCLCNMETPAKQFLQLLNMQLSHQETNF---QIYNFFI---DGA 562 (806)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~---~~~ 562 (806)
++...|.+.+.-+.- +.|+...-. .+....+..+........++..-.....-|+ .....++ .-+
T Consensus 312 ~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL 389 (549)
T ss_pred HhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 999999999888765 445433211 2222333222222333333222111111111 1122222 223
Q ss_pred hcCCC-hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCC
Q 047492 563 GHVKR-PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK---AMKANLAWGFMREMRHNGMY 638 (806)
Q Consensus 563 ~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~ 638 (806)
-+.|. -++|+++++.+.+- .|........ ++..+=.+|.+ ...+.+-+.+-+-+.+.|+.
T Consensus 390 W~~g~~dekalnLLk~il~f--t~yD~ec~n~--------------v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQF--TNYDIECENI--------------VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HhcCCccHHHHHHHHHHHHh--ccccHHHHHH--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34454 78889999888843 3322221100 02222223332 12233444444445567887
Q ss_pred CCH----HHHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhh
Q 047492 639 PSM----ECYEELIKL--LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 639 p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 712 (806)
|-. ..-+.+.++ +...|++.++.-.-.-+.+ +.|++.++..++-.+....++.+|+..+.... |+..+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP----~n~~~ 527 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP----PNERM 527 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC----Cchhh
Confidence 743 333333333 4568898888765554443 46788888888888889999999998888774 44444
Q ss_pred HHH
Q 047492 713 LGQ 715 (806)
Q Consensus 713 ~~~ 715 (806)
+++
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 443
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.0028 Score=56.67 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCcccHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 304 VPEVFRFNFLVSRLLK-----ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGI 378 (806)
Q Consensus 304 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 378 (806)
..|..+|..+++.+.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4567777777877764 47788888889999999999999999999998764 3221 111111111
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGK 427 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 427 (806)
. - .-.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 113 -----~-h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----M-H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----c-c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 1 123445677778888888888888888888877766554
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.014 Score=54.99 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=67.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhH
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 730 (806)
+.+.++|++|+..|...++...+ +++.|..-..+|.+.|..+.|++-.+.++.-.|.....|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 44566777777777777665433 33333334456677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH
Q 047492 731 EGLQKMIEQCFPLDTYTYNILLRRL 755 (806)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~li~~~ 755 (806)
+.|++.++ +.|+..+|-.=+...
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHH
Confidence 77777777 466666665544443
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.0029 Score=50.48 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=29.1
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
.+..+...|...|++++|++.+++..+.. +.+..++..+...+.. |++++|...+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444555555555555555432 2233444455555555 55555555555544
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.26 Score=49.04 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+.+..|.-+...|+...|.++-++.. .|+..-|...+.+++..++|++-.++... + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHH
Confidence 345555666667777777777766543 37777788888888888888776665432 1 1335677778888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
.+.|...+|..++.. ++ +..-+..|.+.|++.+|.+..-
T Consensus 248 ~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 888888777777665 11 2345667778888877776543
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.23 E-value=0.0079 Score=50.44 Aligned_cols=99 Identities=10% Similarity=-0.115 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CchhHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMY--PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV--TSFIGNTLLL 684 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 684 (806)
+..++..+.+.|++++|...|..+.+.... .....+..+..++.+.|++++|.+.++.+....... ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 567777788888999999988888764211 113455667788888888888888888887654321 1223333334
Q ss_pred HhhccccHHHHHHHHHhhhhccC
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
.+...|+..+|...++++....|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 44444444444444444443333
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.22 E-value=0.006 Score=51.19 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---ccchHHH
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFEN---DVTRTIM 206 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 206 (806)
+..+...+.+.|++++|...|+.+... .|+ ...+..+..++.+.|+++.|...++.+....+.+ ..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344445555556666666666555443 121 2234444555555555555555555555443321 2234444
Q ss_pred HHHhhccCCHHHHHHHHHHhHhCC
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 455555555555555555555443
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0034 Score=50.01 Aligned_cols=92 Identities=20% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
..+...+...|++++|+..|++..+.. ..+...+..+...+...++++.|.+.++......+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344445555566666666666655431 1122344444555555555555555555555544444444445555555555
Q ss_pred CHHHHHHHHHHhH
Q 047492 215 KIDEAVEYFQQLV 227 (806)
Q Consensus 215 ~~~~a~~~~~~~~ 227 (806)
+.+.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.42 Score=50.52 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHH
Q 047492 213 QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALE 292 (806)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (806)
-|++++|++++-++-+++. .|..+.+.|++-...++++.--...+-.--...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677766666655543 3445556666666665554322111111122456666666666666777766
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 293 FLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
.+..-.. -...+.++.+..++++...+-..+. -|....-.+..++.+.|.-++|.+.|-+...
T Consensus 818 yY~~~~~----------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-- 880 (1189)
T KOG2041|consen 818 YYSYCGD----------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL-- 880 (1189)
T ss_pred HHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC--
Confidence 6655432 1223455555555555444433332 2444555566666666666666665543221
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 373 LSPNGIVYNYLINSLCGDGSTHEAYEVLKN 402 (806)
Q Consensus 373 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 402 (806)
|. ..+..|...++|.+|.++-++
T Consensus 881 --pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 --PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 21 234455555666666665544
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.43 Score=50.45 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=10.7
Q ss_pred CChhhHHHHHHHHhhc
Q 047492 145 GKPDIALHLFGKMRFQ 160 (806)
Q Consensus 145 ~~~~~A~~~~~~m~~~ 160 (806)
|.+++|.++|-+|.++
T Consensus 748 g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR 763 (1189)
T ss_pred cchhHhhhhhhccchh
Confidence 6677777777666544
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.14 Score=50.50 Aligned_cols=20 Identities=0% Similarity=-0.190 Sum_probs=9.2
Q ss_pred HHHhcCChhHHHHHHHHHhh
Q 047492 456 ALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 456 ~~~~~~~~~~a~~~~~~~~~ 475 (806)
++...|+...|.+.++....
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 33344555555555555443
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.13 E-value=0.034 Score=54.97 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHhhcc-CCHHHHHHHHHHhHhC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 207 LKCLCKQ-KKIDEAVEYFQQLVSG----REC-VSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 207 i~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
...|... |++++|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|++...
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455555 6777777766655431 210 1123445555666666666666666666544
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.08 E-value=0.016 Score=52.40 Aligned_cols=91 Identities=12% Similarity=-0.049 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD--DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
....+..+...|...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+..+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 445566777777788888888888888876532222 356777777788888888888888888877665666677777
Q ss_pred HHhhccCCHHHHH
Q 047492 208 KCLCKQKKIDEAV 220 (806)
Q Consensus 208 ~~~~~~g~~~~a~ 220 (806)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777766654443
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.092 Score=54.63 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKS 367 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 367 (806)
+...-+++|+++|-.|+..... ..++-.|.+.+|-++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 3444566777888777765433 345556777777777764
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.05 E-value=0.19 Score=48.03 Aligned_cols=174 Identities=7% Similarity=0.016 Sum_probs=105.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-H---HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSME-C---YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
.....+.+.|++++|...|+++... -|+.. . .-.+..++.+.+++++|...+++..+..+.....-+-....+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 4455567789999999999999884 33322 2 2345677889999999999999998876544332222222111
Q ss_pred h--ccc---------------c---HHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChh
Q 047492 687 L--KTR---------------D---LYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTY 746 (806)
Q Consensus 687 ~--~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 746 (806)
+ ..+ | ...|...+++.....|.+... .+|...+..+.+. .-..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHH---HHHH
Confidence 1 110 1 233445555555444443322 2222222222221 0001
Q ss_pred hHHHHHHHHhh-hcHHHHHHHHHHHHHc--CCCCChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 747 TYNILLRRLSV-SEIDHACELFNRMRRK--GYEPDQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 747 ~~~~li~~~~~-g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
--.+..-|.+ |.+.-|+.-++.+.+. +.+........++.+|.+.|..++|.++...
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1133455777 8999999999999876 4445556777888999999999999887654
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.03 E-value=0.0081 Score=59.01 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHh
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
|..++....+.+..+.|..+|.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~ 28 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRAR 28 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3334444444444444444444443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.02 E-value=0.0075 Score=54.30 Aligned_cols=95 Identities=14% Similarity=-0.075 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHH
Q 047492 129 HQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL--DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIM 206 (806)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (806)
.....|..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|...++......+....++..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345566667777777788888888888876552222 124667777777778888888888877776655444455555
Q ss_pred HHHhh-------ccCCHHHHHHHH
Q 047492 207 LKCLC-------KQKKIDEAVEYF 223 (806)
Q Consensus 207 i~~~~-------~~g~~~~a~~~~ 223 (806)
...+. ..|+++.|...+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH
Confidence 55555 455555444333
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.01 E-value=0.019 Score=58.75 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=45.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
...|++++|.+.++++++.. +.+...|..+..+|.+.|++++|...++.....++. +...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555555443 333444555555555555555555555555544433 4445555555555555555555
Q ss_pred HHHHHHHH
Q 047492 503 RLLVEMEE 510 (806)
Q Consensus 503 ~~~~~m~~ 510 (806)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.00 E-value=0.018 Score=49.24 Aligned_cols=88 Identities=7% Similarity=-0.079 Sum_probs=50.3
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
.+...|++++|.+.|+-...-.|.+..-|-.|..++-..|++++|+..+..+.... +.|...+..+..++.. |+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 34444555555555555555555555555566666666666666666666666653 3455555566666666 666666
Q ss_pred HHHHHHHHHc
Q 047492 764 CELFNRMRRK 773 (806)
Q Consensus 764 ~~~~~~m~~~ 773 (806)
.+.|+.....
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 6666655533
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.00 E-value=0.089 Score=50.30 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=32.5
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccch---HHHHHHhhccCCHHHHHHHHHHhHhCCC
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTR---TIMLKCLCKQKKIDEAVEYFQQLVSGRE 231 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~ 231 (806)
.+...|++++|.+.|+.+....+.+..+. -.+..++.+.+++++|...+++.++..+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34456666666666666666554333322 3445556666666666666666665544
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.99 E-value=0.007 Score=59.43 Aligned_cols=129 Identities=10% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc-cccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK-TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
+|..+++..-+.+..+.|..+|.+..+.+. .+..+|-.....-.. .++...|.++|+...+..+.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455566666666666666666666664322 122222222222222 344555777777777667777777777777777
Q ss_pred ccccchhhHHHHHHHHHcCCCCCh---hhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDT---YTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+.|+.+.|..+|++.... ++++. ..|...+.-=.+ |+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777765 33332 466666666666 7777777777777654
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.0095 Score=49.07 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC--CChhhHHHHHhhh
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRKGYE--PDQWTFDILKCGL 789 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~ 789 (806)
.+..++-..|+.++|+..+++..+.|.... ...+-.+...+.. |++++|+.++++....... -+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445566677777777888887777765443 3345555666666 8888888887777654211 0122223344566
Q ss_pred hccCCHHHHHHHHH
Q 047492 790 YNCLRTDEAERRLE 803 (806)
Q Consensus 790 ~~~g~~~eA~~~l~ 803 (806)
...|+.+||.+.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 77788888777664
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.94 E-value=0.012 Score=50.31 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
....-.+...+...|++++|..+|+.+... .| +..-|-.|-.++-..|++++|+..|.......+.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 333444555566778888888888887765 33 334555555566667888888888888887777777777777888
Q ss_pred hhccCCHHHHHHHHHHhHhC
Q 047492 210 LCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~ 229 (806)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888877766653
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.23 Score=51.90 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=16.2
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLE 259 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (806)
++++.++|-.|+... +...++-.|.+.+|-++|.
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 444555555454332 2234445555555555554
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.92 E-value=0.0019 Score=49.99 Aligned_cols=20 Identities=35% Similarity=0.225 Sum_probs=9.4
Q ss_pred HHHhhhccccchhhHHHHHH
Q 047492 716 LIGVFSGCIKVSQDIEGLQK 735 (806)
Q Consensus 716 l~~~~~~~g~~~~A~~~~~~ 735 (806)
++.+|.+.|++++|+.++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 180
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.91 E-value=0.0079 Score=61.42 Aligned_cols=101 Identities=9% Similarity=-0.035 Sum_probs=62.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccch
Q 047492 648 IKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVS 727 (806)
Q Consensus 648 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 727 (806)
...+...|++++|++.++++++.... +...+..+...+...|++.+|...++++....|.+...+..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455667777777777777665432 33445555556666677777777776666666666666666666666667777
Q ss_pred hhHHHHHHHHHcCCCCChhhHHHH
Q 047492 728 QDIEGLQKMIEQCFPLDTYTYNIL 751 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~~~~~~~~~l 751 (806)
+|+..|+++.+. .|+......+
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHH
Confidence 777777666664 3444333333
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.91 E-value=0.029 Score=50.63 Aligned_cols=83 Identities=10% Similarity=-0.041 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
.+..+...+...|++++|...+++..+....+. ...+..+...+...|+.++|...+.++....+.+...+..+..+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455555556666666666666554432221 123333333344444444444444444433333333444444444
Q ss_pred hcccc
Q 047492 721 SGCIK 725 (806)
Q Consensus 721 ~~~g~ 725 (806)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.89 E-value=0.0081 Score=54.09 Aligned_cols=30 Identities=10% Similarity=-0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGH 670 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 670 (806)
...|..+...+...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555555566667777777777766554
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.013 Score=55.26 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=78.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047492 422 LCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIA 501 (806)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 501 (806)
+.+.+++.+|...|.+.++.. +-|.+.|..=..+|++.|.++.|++-.+.....++. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 456678888888888888765 556667777778888888888888877777766544 566788888889999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHH
Q 047492 502 ARLLVEMEENGHKPTRALHRAVIRC 526 (806)
Q Consensus 502 ~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (806)
++.|++..+ +.|+..+|..-|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 988888877 78888777665544
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.87 E-value=0.58 Score=46.64 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++-.. .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555677778899888888866652 47999999999999999999988776432 224477889999999
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999887663 33667888899999999887755443
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.80 E-value=0.31 Score=42.56 Aligned_cols=129 Identities=16% Similarity=0.060 Sum_probs=81.0
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CCccchHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGF--ENDVTRTI 205 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 205 (806)
.|++..--.|..+....|++.+|...|++...--+--|....-.+.++....+++..|...++.+.+..+ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666777777777777777777776544445666666666666677777777777777766654 25556666
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLL 258 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (806)
+.+.+...|+..+|+.-|+...+.-+.|....| ....+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHH
Confidence 667777777777777777777665443333332 234456666655554333
No 186
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=1.1 Score=48.17 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.+. .+.-|..++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555556666677766665544 3666666666667777777766555544432 133455566677
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIH 470 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 470 (806)
.+.|+.++|.+.+-+.. +.. -.+.+|.+.|++.+|.++.
T Consensus 755 ~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 77777777777665521 111 3556667777776666654
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.73 E-value=0.26 Score=42.97 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCc--chhhHH
Q 047492 637 MYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS--KISLLG 714 (806)
Q Consensus 637 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 714 (806)
.-|+...-..+..++...|++.+|...+++....-+-.|..+.-.+..+....++...+...+++.-+..|. .+.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666677788888888888888888776666666666666666777777777777777777644332 334455
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH----HHHHHHHHH
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA----CELFNRMRR 772 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A----~~~~~~m~~ 772 (806)
.+...|...|+.++|...|+..... .|+...-.--..-+.+ |+.++| .++++.+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 6778888899999999999998885 3443322212222344 554444 345555443
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.19 Score=46.36 Aligned_cols=146 Identities=16% Similarity=0.061 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI---- 454 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 454 (806)
+.+.++..+.-.|.+.-....+++.++.....++.....+.+.-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3444555555556666666666666665544555666666666666666666666666555433233333333332
Q ss_pred -HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047492 455 -SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCL 527 (806)
Q Consensus 455 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (806)
..|.-.+++..|...+.++...+.. |+..-|.-.-+..-.|+..+|++.++.|++ ..|...+.++++-.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHH
Confidence 3345567777888888888777655 555555444444556888899999999987 567776666655443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.66 E-value=0.045 Score=45.15 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLD--DYAYHVLLNALVEQGCFDAVAVVSKQISMR 195 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (806)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555443322 123333444444455555555555444443
No 190
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=1.4 Score=48.10 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=130.7
Q ss_pred CcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHH----HhcCChhhHHHHHHHHhhcCCCCChh
Q 047492 92 FHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGY----ALAGKPDIALHLFGKMRFQGMDLDDY 167 (806)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~ 167 (806)
+.........-+..+.+...+..|..+-+.-.. +..+...+...| -+.|++++|...|-+-... +.|
T Consensus 330 ~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~--- 400 (933)
T KOG2114|consen 330 HELIEKDLETKLDILFKKNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP--- 400 (933)
T ss_pred eeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh---
Confidence 344566778889999999999999888776543 444444555444 4579999999988776533 223
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
..++.-|............++.+.+.|..+...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+
T Consensus 401 --s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 401 --SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred --HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 2455566666677777888899999999999989999999999999999888777665 3321 1234567778888
Q ss_pred cCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 248 NSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
.+-.++|..+-...... ...... .+-..+++++|++++..+.
T Consensus 476 snyl~~a~~LA~k~~~h------e~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKKH------EWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred hChHHHHHHHHHHhccC------HHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 88888888776655432 222222 2345688999999998875
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.035 Score=54.39 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCch
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREM----RHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHG-----RQVTSF 677 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 677 (806)
+|..|...|.-.|+++.|+..-+.- ++.|-+. ....+..+.+++.-.|+++.|.+.++...... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4777777888889999998665432 2234332 23456778888888999999999887654332 344566
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhh------hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGML------INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+.+|...|.-..++..|+.++.+.. ...........+|..+|...|..++|+...+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77888888888889999999888765 334456667888999999999999988877766553
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.46 Score=44.01 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH-----Hh
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL-----HA 686 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~ 686 (806)
++....-.|.+.-.+.++++.++...+-++.....+.+.-...|+.+.|...++...+..-..+....+.++. .+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 3334444445555555555555543344444455555555555666666666655544433333333333222 23
Q ss_pred hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
+.+++...|.+.+.+....++.++...|.-+-...-.|+..+|++..+.|...
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445555555555555444444444444333333344555555555555543
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.59 E-value=0.0034 Score=46.22 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 724 IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 724 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
|++++|++.|+++.+. .|.+...+..+..+|.. |++++|..+++++.
T Consensus 5 ~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444443 22233334444444444 44444444444444
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.94 Score=45.07 Aligned_cols=131 Identities=12% Similarity=-0.045 Sum_probs=78.4
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH---NGMY 638 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~ 638 (806)
+.-..+.+.|...|++..+ +.|+......+....- -...+..=..-..+.|++..|.+.|.+.+. .+..
T Consensus 213 ~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPK------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred cccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHH------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 3446778888888888774 4566544211110000 001123333445678999999999999886 2455
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHH--HHHhhccccHHHHHHHHHhhh
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTL--LLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 703 (806)
|+...|.....+..+.|+.++|+.-.++..+.+. .++.-.+ ..++...+++++|.+.++.+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~---syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDS---SYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777778899999999998888765531 1111111 112334455666666666654
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.54 E-value=0.0069 Score=44.01 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=25.6
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
+.+.|++++|...++++....|.+...+..+..++...|++++|+..|+++.+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555555555555544
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.52 E-value=0.086 Score=56.50 Aligned_cols=134 Identities=9% Similarity=-0.035 Sum_probs=75.8
Q ss_pred CCChhhHHHHHHHHHhcC-----CcchHHHHHHHHHhcCCCCccchHHHHHHhhccC--------CHHHHHHHHHHhHhC
Q 047492 163 DLDDYAYHVLLNALVEQG-----CFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK--------KIDEAVEYFQQLVSG 229 (806)
Q Consensus 163 ~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~ 229 (806)
..+..+|...+++..... ....|..+|++..+..+.....+..+..++.... ++..+.+..+.....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 345667777776654322 2456777777777776665555555444332211 122333333332222
Q ss_pred -CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 230 -RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 230 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
....+..+|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++...
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12233455666655555667777777777776654 35566677777777777777777777776654
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.49 E-value=0.011 Score=42.88 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=41.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+...+.+.|++++|.+.|+.+.+..+. +...+..+..++...|++++|...|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777776644 667777777777778888888877777765
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.45 E-value=0.012 Score=43.21 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=29.1
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+.|++++|.++|+.+....+. +...+..+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666665555444 555555566666666666666666665554
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.44 E-value=0.11 Score=55.71 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=57.8
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHH
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFD 783 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~ 783 (806)
.+.+..++.++.-.+...|++++|...++++.+. .|+...|..+...|.. |+.++|.+.+++..+. .|...||.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 4455566777766777789999999999999986 4688888899999988 9999999999888765 45544544
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.056 Score=51.39 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc---cccchhhHHHH
Q 047492 657 YDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG---CIKVSQDIEGL 733 (806)
Q Consensus 657 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 733 (806)
.+....-++.-...+ +-|...|..|...|...|+...|...|..+..-.++++..+..+..++.. .....++..+|
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344444444444443 45677788888888888888888888888888778888777777776643 34556778888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 734 QKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 734 ~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+++.+.. +.|+.+..-|...+.. |++.+|...|+.|.+.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8888752 3445555555566666 8888888888888866
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.17 Score=48.25 Aligned_cols=109 Identities=12% Similarity=0.002 Sum_probs=81.7
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH--HccCCcHHHHHHHHHhHhh
Q 047492 470 HSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT-RALHRAVIRCL--CNMETPAKQFLQLLNMQLS 546 (806)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~ 546 (806)
++.-...++. |...|..|...|...|+.+.|..-|....+ +.|+ +..+..+-.++ ...+........+++....
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3344444555 888888888888888888888888888877 2332 33333333333 3445556777778888888
Q ss_pred CCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC
Q 047492 547 HQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS 581 (806)
Q Consensus 547 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 581 (806)
..+.|+.....+...+...|++.+|...|+.|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999965
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=2.1 Score=46.18 Aligned_cols=341 Identities=12% Similarity=0.058 Sum_probs=182.8
Q ss_pred cCCcchhHHHH-----HHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc--chHHHHHHHHHhcCCC
Q 047492 126 RYYHQVRFNDT-----LVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF--DAVAVVSKQISMRGFE 198 (806)
Q Consensus 126 ~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~ 198 (806)
|++.+..-|.. +|.-+...+.+..|+++-..+...-..- ...|......+.+..+. +++.+...+=......
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 67777666654 4667777888999999988886432121 45666666666665322 2333333222222234
Q ss_pred CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhH
Q 047492 199 NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV----SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAY 274 (806)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 274 (806)
+..+|..+.+..-..|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.+... .+...+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----~~~s~l 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----LNRSSL 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH----HHHHHH
Confidence 56688888888888999999988877544433211 2223445555666677777777766665543 011111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH--HHH----hCCCCCChhhHHHH
Q 047492 275 DVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFM--DMK----EGQISPDGVTMNTV 348 (806)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~m~----~~g~~~~~~~~~~l 348 (806)
...+ .+.--|..+|.......+ .. .+-+ +.+.++-.++..-|. ... ..|..|+. ...
T Consensus 582 ~~~l------~~~p~a~~lY~~~~r~~~----~~---~l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~ 644 (829)
T KOG2280|consen 582 FMTL------RNQPLALSLYRQFMRHQD----RA---TLYD-FYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTA 644 (829)
T ss_pred HHHH------HhchhhhHHHHHHHHhhc----hh---hhhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHH
Confidence 1111 112233333333332111 00 0111 111222222221111 100 01222222 222
Q ss_pred HHHHHHcCCh----------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047492 349 LCFFCKAGMV----------DVAIELYKSRSE-FGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSI 417 (806)
Q Consensus 349 l~~~~~~g~~----------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 417 (806)
...+.+.... .+-.++.+.+.. .|..-.-.+.+--+.-+...|+..+|.++-.+.+ .||...|-.
T Consensus 645 a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wL 720 (829)
T KOG2280|consen 645 ANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWL 720 (829)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHH
Confidence 3333333221 111222222221 2322223344445556667788888888766654 468888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 047492 418 LADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR 497 (806)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 497 (806)
-+.+++..+++++-+++-+.. -++.-|.-++.+|.+.|+.++|.+++..+... .-...+|.+.|+
T Consensus 721 k~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGD 785 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhcc
Confidence 888888888888866665432 12456777888888999999888887655211 156778888888
Q ss_pred HHHHHHHHHH
Q 047492 498 ADIAARLLVE 507 (806)
Q Consensus 498 ~~~a~~~~~~ 507 (806)
+.+|.++--+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 8888776544
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=1.4 Score=43.97 Aligned_cols=271 Identities=14% Similarity=0.004 Sum_probs=130.6
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 140 GYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 140 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
.+.+..++..|+..+....+.... +..-|..-...+...|+++++.--.+.-.+........+.-.-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 345666777788888877766322 3445555566666677777776666555554433333555555566666666666
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHH-HHHHHHcCCHHHHHHHHHhhh
Q 047492 220 VEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVW-LRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~ 298 (806)
.+.++.- ..+ ....|+..++.......-+|...+|..+ ..++...|+.++|.+.--.++
T Consensus 137 ~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 137 EEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 6655511 111 1112222222222221112322333222 223344566666655544444
Q ss_pred hcCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------------HHHHHHcCChHHHHH
Q 047492 299 SLEGYVPEVFRFNFLVSR--LLKENRLMEVFDLFMDMKEGQISPDGVTMNTV-------------LCFFCKAGMVDVAIE 363 (806)
Q Consensus 299 ~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------------l~~~~~~g~~~~a~~ 363 (806)
... .+..+...+++ +.-.++.+.+...|++-+..+ ||...-..+ -+-..+.|.+..|.+
T Consensus 197 kld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 197 KLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred hcc----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 311 12222233322 223455566666666555432 333221111 112335566677777
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-HH--HHHHhcCChhHHHHHHHH
Q 047492 364 LYKSRSE---FGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSI-LA--DALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 364 ~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll--~~~~~~g~~~~a~~~~~~ 437 (806)
.|.+.+. .++.++...|........+.|+.++|+.--++...- |...... +. .++...++|++|.+-++.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554 223344445555555566666666666665555432 2222211 11 223344566666666665
Q ss_pred HHHC
Q 047492 438 ALER 441 (806)
Q Consensus 438 ~~~~ 441 (806)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 5544
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.24 E-value=1.2 Score=44.78 Aligned_cols=103 Identities=9% Similarity=-0.014 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHhHhcc---CCcchhHHHHHHHHHHh---cCChhhHHHHHHHHhhcCCCCChh
Q 047492 94 HTRATFHAIFKLLHCAKLTPLMVDFLENYKKDR---YYHQVRFNDTLVMGYAL---AGKPDIALHLFGKMRFQGMDLDDY 167 (806)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~ 167 (806)
.++.....++-++....+++.+.++++.+.... +..+..+--...-++.+ .|+.++|++++..+....-.+++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 355566666667888888999999999888751 22233333345556666 788999999998866555567788
Q ss_pred hHHHHHHHHHh----c-----CCcchHHHHHHHHHhcC
Q 047492 168 AYHVLLNALVE----Q-----GCFDAVAVVSKQISMRG 196 (806)
Q Consensus 168 ~~~~ll~~~~~----~-----~~~~~a~~~~~~~~~~~ 196 (806)
+|..+.+.|.. + ...++|+..|.+.-+..
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 88877776653 1 12456777777666554
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.24 E-value=1.4 Score=43.54 Aligned_cols=219 Identities=15% Similarity=0.099 Sum_probs=93.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccH--HHHHHHHH---hcC
Q 047492 247 KNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRF--NFLVSRLL---KEN 321 (806)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~---~~~ 321 (806)
+.|..+.|.+.-++.-.. -+--...+...+...+..|+|+.|+++++.-+...-+.+++.-- ..|+.+-. -..
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 345555555554444332 11112345555555555566666665555554433344443221 11221111 112
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTM-NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
+...|...-.+..+ +.||..-- ..-..++.+.|++.++-.+++.+-+.. |....+.. ..+.+.|+ .+..-+
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHH
Confidence 23333333333222 23432221 122345556666666666666655543 33222221 12223333 222222
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhhcC
Q 047492 401 KNSID-HGLFP-GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA-NKVEVGYLIHSELSRMN 477 (806)
Q Consensus 401 ~~m~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~ 477 (806)
++... ...+| +......+..+....|++..|..--+.... ..|....|..|.+.-... |+-.++...+.+..+..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22221 11222 233444445555555666555544443333 245555665555544333 66666666665555443
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.20 E-value=0.022 Score=41.97 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN-RADIAARLLVEMEE 510 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 510 (806)
..+|..+...+...|++++|...|++..+.++. +...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666677777777777777777666554 5666667777777777 57777777766654
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.20 E-value=1.6 Score=43.91 Aligned_cols=129 Identities=10% Similarity=0.083 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHG-RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
.|...+++..+..-++.|..+|-++.+.+ ..++++++++.+..++ .||...|.++|+--....+.+....+-.+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45667777778888999999999999998 5778889888887654 577788888888888778777777777777778
Q ss_pred ccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.-++-+.|..+|++..++ +..+ ...|..+|.-=.. |+...+..+=++|...
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 889999999999987775 4444 6789999988788 9998888888877754
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.18 E-value=0.26 Score=45.86 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=20.3
Q ss_pred hcCCcchHHHHHHHHHhcCCCCcc---chHHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 178 EQGCFDAVAVVSKQISMRGFENDV---TRTIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
..|++++|...|+.+....+.+.. +...++.++-+.|+++.|...++.+++
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444332211 233334444444444444444444443
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.15 E-value=0.011 Score=43.52 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC-CHHHHHHHHHH
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK-KIDEAVEYFQQ 225 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 225 (806)
|..+...+...|++++|+..|++..+..+.+...+..+..++...| ++++|.+.+++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3333333444444444444444444433333334444444444444 34444444433
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.13 E-value=0.29 Score=45.53 Aligned_cols=174 Identities=9% Similarity=-0.044 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGM--YPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNTLLL 684 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~ 684 (806)
+-.....+...|++++|...|+.+...-. +-.....-.++.++.+.|++++|...++...+..+..... .+..+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33556667789999999999999997421 1223445567888999999999999999988765443322 1112222
Q ss_pred Hhhc-----------cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHH
Q 047492 685 HALK-----------TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLR 753 (806)
Q Consensus 685 ~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 753 (806)
++.. .+....|...++......|.+..+- +|...+..+.+. .... --.+..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~---la~~-e~~ia~ 149 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNR---LAEH-ELYIAR 149 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHH---HHHH-HHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHH---HHHH-HHHHHH
Confidence 2211 1223345555555554444444332 222222222221 0001 112345
Q ss_pred HHhh-hcHHHHHHHHHHHHHc--CCCCChhhHHHHHhhhhccCCHHHHHH
Q 047492 754 RLSV-SEIDHACELFNRMRRK--GYEPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 754 ~~~~-g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
-|.+ |.+.-|..-++.+.+. +..-.......++.++.+.|..+.|..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 5677 8888888888888876 222223455678888888888875543
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.98 E-value=0.079 Score=51.06 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCc---cchHHH
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMRGFEND---VTRTIM 206 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l 206 (806)
|...+..+.+.|++++|+..|+.+.+. .|+. .++..+..+|...|+++.|...|+.+....+.+. .++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555443 2322 2344444444455555555555555544433222 122223
Q ss_pred HHHhhccCCHHHHHHHHHHhHh
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~ 228 (806)
...+...|+.++|..+|+.+++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444455555554444443
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.91 E-value=0.042 Score=48.03 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=54.4
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFDI 784 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 784 (806)
.+...++..+...|++++|+..++++... -|.|...|..+|.+|.. |+..+|++.|+++.+ .|+.|+..+-..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 34566777788899999999999999987 46778899999999999 999999999988763 399999877553
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.87 E-value=0.12 Score=43.19 Aligned_cols=100 Identities=8% Similarity=-0.058 Sum_probs=69.6
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
|..++..++.++++.|+.+....+++..- |+.++...-..- --......|+..+..+++.+|+..|++..|+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~--~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD--YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc--cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45678888999999999999998887765 333322110000 00011246777888899999999999999999988
Q ss_pred HHHh-CCCCCCHHHHHHHHHHHHcC
Q 047492 631 EMRH-NGMYPSMECYEELIKLLCST 654 (806)
Q Consensus 631 ~m~~-~g~~p~~~~~~~l~~~~~~~ 654 (806)
...+ .+++.+..+|..|++-....
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 8877 37777888888888765543
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.096 Score=43.71 Aligned_cols=50 Identities=8% Similarity=-0.070 Sum_probs=25.1
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHH
Q 047492 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVS 315 (806)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 315 (806)
...|+..+..+++.+|+..|++..|+++++...+..+++.+..+|..|++
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455555555555555555555555555555444444444444544443
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.81 E-value=2.5 Score=42.72 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=87.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFG---LSPNGIVYNYLINSLCG---DGSTHEAYEVLKNSIDHGLFPGKKTLSILAD 420 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 420 (806)
.++-+|....+++...++++.+...- +.-....-....-++.+ .|+.++|.+++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666667777777777766521 11111112223334455 6777777777777555555566677766665
Q ss_pred HHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hh---HHHHHH---H-HHhhcCC---CC
Q 047492 421 ALCR---------DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK-VE---VGYLIH---S-ELSRMNK---VA 480 (806)
Q Consensus 421 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~---~a~~~~---~-~~~~~~~---~~ 480 (806)
.|-. ....++|...|.+.-+.. |+...--.++..+...|. .+ +..++- . ...+++. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 113556666666544432 333222122222222332 21 112221 1 1222332 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
+-..+.+++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4455678889999999999999999999874
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.77 E-value=2.6 Score=42.58 Aligned_cols=144 Identities=12% Similarity=0.133 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHH
Q 047492 482 ENTYIQLIHGFNKSNRADIAARLLVEMEENG-HKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFID 560 (806)
Q Consensus 482 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (806)
...|...+....+..-.+.|..+|-+..+.| +.++...+++.+..++.... ..+...++......+.++.--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~--~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR--ATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc--chHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456677777777777888888888888887 66777777888877766554 34445555555555555555556666
Q ss_pred hhhcCCChHHHHHHHHHHHH----CCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047492 561 GAGHVKRPDLARAVYELMQR----SGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNG 636 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 636 (806)
.+..-++-+.|..+|+.... ...+| .|..+|+-=..-|+...+..+=+.|.+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~----------------------iy~kmi~YEs~~G~lN~v~sLe~rf~e-- 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKR----------------------IYDKMIEYESMVGSLNNVYSLEERFRE-- 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhH----------------------HHHHHHHHHHhhcchHHHHhHHHHHHH--
Confidence 66677777778888874432 22221 377777777777777777777777766
Q ss_pred CCCCHHHHHHHHHHH
Q 047492 637 MYPSMECYEELIKLL 651 (806)
Q Consensus 637 ~~p~~~~~~~l~~~~ 651 (806)
+-|...+...+..-|
T Consensus 531 ~~pQen~~evF~Sry 545 (660)
T COG5107 531 LVPQENLIEVFTSRY 545 (660)
T ss_pred HcCcHhHHHHHHHHH
Confidence 445444444443333
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.74 E-value=0.068 Score=39.83 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=44.3
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
..|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...+ ..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 4567777788888888777777655 667777777778888888888888887776 344433
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.66 E-value=0.12 Score=50.86 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=20.3
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCcc----chHHHHHHhhccCCHHHHHHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDV----TRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~ 222 (806)
+|+.|+......+|+...+.|-.+-. .|..|..+|.-.+++++|+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 34444444444444444444433221 233334444444445555444
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.084 Score=46.13 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHh
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRAL 519 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 519 (806)
....++..+...|+++.|..+.+.+...++. |...|..+|.+|...|+...|.+.|+++.. -|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677788888888888888777666 777888888888888888888888887643 377776654
No 220
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.47 E-value=0.12 Score=48.09 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 356 GMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG----------------STHEAYEVLKNSIDHGLFPGKKTLSILA 419 (806)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~a~~~~~~m~~~~~~p~~~~~~~ll 419 (806)
+.++-....++.|.+.|+..|..+|+.|+..+-+.. +-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 334444444555555555555555555555443321 1233455555666666666655555555
Q ss_pred HHHHhcC
Q 047492 420 DALCRDG 426 (806)
Q Consensus 420 ~~~~~~g 426 (806)
+++.+.+
T Consensus 166 n~FGr~~ 172 (406)
T KOG3941|consen 166 NAFGRWN 172 (406)
T ss_pred HHhcccc
Confidence 5555444
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.43 E-value=0.27 Score=47.39 Aligned_cols=103 Identities=17% Similarity=0.022 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCc--chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----hhhH
Q 047492 96 RATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYH--QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----DYAY 169 (806)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~ 169 (806)
...|...+..+.+.|+++.+...|+.+....+.. ....+-.+...|...|++++|+..|+.+.+. .|+ ..++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 5677777777778899999999999998863221 1457778889999999999999999999865 333 3455
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCc
Q 047492 170 HVLLNALVEQGCFDAVAVVSKQISMRGFEND 200 (806)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (806)
-.+...+...|+.+.|..+|+.+.+..+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5566677789999999999999988766443
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.22 E-value=0.058 Score=40.23 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
+.+.++++.|.++++.+...++.+...+.....++...|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.16 E-value=0.45 Score=50.65 Aligned_cols=159 Identities=16% Similarity=0.076 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch------hHHHHHHHhh----ccccHHHHHHHHHhhhhccCcchhhHH
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF------IGNTLLLHAL----KTRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
..++....=.||-+.+++.+....+.+-...+. .|+..+...+ ...+...+.+++.......|....-.-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555666677777777666655432111111 1222221111 245677778888887777777666666
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcC---CCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHH-Hhhh
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQC---FPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDIL-KCGL 789 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~ 789 (806)
--...+...|+.++|++.++++.... .+.....+--+...+.. ++|++|.+.|.++.+..-- +..+|..+ ..++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 66677778888888888888766421 11122333344555555 9999999999999875322 33344432 2334
Q ss_pred hccCCH-------HHHHHHHHh
Q 047492 790 YNCLRT-------DEAERRLEE 804 (806)
Q Consensus 790 ~~~g~~-------~eA~~~l~~ 804 (806)
...|+. ++|.+++.+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHH
Confidence 568887 777777765
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=6.6 Score=43.26 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=84.2
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSG--FMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
...-+..+.+...++-|..+.+.- +..++. .......+-+.+.|++++|..-|-+-... +.| ..+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHH
Confidence 344444555555555555443321 221111 12223334445566666666665554421 222 123334
Q ss_pred HHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH
Q 047492 281 LVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV 360 (806)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 360 (806)
|....+..+-..+++.+.+ .|+ .+...-..|+++|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~-~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHK-KGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHH-ccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 4444444444455555543 332 233344566677777777666655554433 2211 1123445555556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 361 AIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
|..+-..... +......++. ..+++++|++++..|.
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 6655443322 2333333333 3466777777766553
No 225
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.01 E-value=3.2 Score=47.47 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR 690 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 690 (806)
....-+.+.+.+++|.-+|...-+ ....+.+|...|+|.+|..+..++.... .--..+-..+...+...+
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcc
Confidence 333444445555555555544322 1234455666666666666655542211 000111133444445555
Q ss_pred cHHHHHHHHHhh
Q 047492 691 DLYEAWIRLRGM 702 (806)
Q Consensus 691 ~~~~a~~~~~~~ 702 (806)
+.-+|-+++.+.
T Consensus 1014 kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1014 KHYEAAKILLEY 1025 (1265)
T ss_pred cchhHHHHHHHH
Confidence 555555554444
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.00 E-value=0.045 Score=41.51 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=27.8
Q ss_pred hHHHHHHHHhh-hcHHHHHHHHHHHHHc----CC-CCC-hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 747 TYNILLRRLSV-SEIDHACELFNRMRRK----GY-EPD-QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 747 ~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
+|+.+...|.. |++++|+..|++..+. |- .|+ ..++..+..++...|+.++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444 5555555555554422 11 111 33455555556666666666665543
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=1.2 Score=42.48 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
....|++..|..+|.......+.+......++.+|...|+++.|..++..+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 445667777777777777666666666667777777777777777777766543
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.88 E-value=2.3 Score=36.70 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
..++..+...+.+.....+++.+...+. .+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3445555555555566666665555542 4445555666665544
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=94.86 E-value=1.1 Score=38.96 Aligned_cols=88 Identities=7% Similarity=-0.054 Sum_probs=61.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047492 421 ALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADI 500 (806)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 500 (806)
-+...|++++|..+|.-+.-.+ ..+..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3456678888888887776655 344555666677777777888888877766554443 55556667777888888888
Q ss_pred HHHHHHHHHH
Q 047492 501 AARLLVEMEE 510 (806)
Q Consensus 501 a~~~~~~m~~ 510 (806)
|...|...++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888877776
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.81 E-value=1.5 Score=37.82 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR 250 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (806)
.++..+...+.......+++.+...+..+...++.++..|++.+ .....+.++. . .+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHcCc
Confidence 34444444444445555555544444334444555555554432 2222222221 0 112233345555555555
Q ss_pred HHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHc-CCHHHHHHHHHh
Q 047492 251 FEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRA-GRLDLALEFLKS 296 (806)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 296 (806)
++++..++..+.. |...+..+... ++.+.|.+++.+
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 5555555554422 23333333333 555556555554
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.77 E-value=0.17 Score=51.49 Aligned_cols=66 Identities=11% Similarity=-0.016 Sum_probs=38.4
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh----hhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT----YTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.|.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.. |+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555666666666666666666666666664 3332 235566666666 6666666666665543
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=94.65 E-value=0.74 Score=39.92 Aligned_cols=83 Identities=12% Similarity=-0.070 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELF 767 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~ 767 (806)
.|++++|..+|+-...-.+.+..-|..|...+-..+++++|+..+..+...+ ..|+..+-.+..++.. |+.+.|...|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 3333333333333333333333344444444555555555555555544432 2333334444444444 5555555555
Q ss_pred HHHHH
Q 047492 768 NRMRR 772 (806)
Q Consensus 768 ~~m~~ 772 (806)
+....
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 55544
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.60 E-value=0.98 Score=47.34 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHH
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSR 316 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 316 (806)
-.+.++.-+-+.|..+.|+++...-..+ .....+.|+++.|.++.++. .+...|..|...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 3455555555566666665554332221 22334455555555543332 234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEA 396 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 396 (806)
..+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 5555555555555544322 3444444555555555555544444433 123333333334555544
Q ss_pred HHHHH
Q 047492 397 YEVLK 401 (806)
Q Consensus 397 ~~~~~ 401 (806)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.56 E-value=5.5 Score=39.62 Aligned_cols=252 Identities=13% Similarity=0.101 Sum_probs=146.0
Q ss_pred cCCHHHHHHHHHHhhhCCCCCcchh--hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHH
Q 047492 248 NSRFEQAGKLLEDFKDRDDVVKLEK--AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLM 324 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 324 (806)
.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.|.++-+..-. ..|. ...+...+...+..|+|+
T Consensus 133 eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 133 EGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred cCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChH
Confidence 56777777777776643 2111 122222233456777878777776643 3344 456778888888999999
Q ss_pred HHHHHHHHHHhCC-CCCChh--hHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCChhHHH
Q 047492 325 EVFDLFMDMKEGQ-ISPDGV--TMNTVLCFFCK---AGMVDVAIELYKSRSEFGLSPNGIVY-NYLINSLCGDGSTHEAY 397 (806)
Q Consensus 325 ~a~~~~~~m~~~g-~~~~~~--~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~ 397 (806)
.|+++++.-+... +.+|.. .-..|+.+-.. .-+...|...-.+..+ +.||..-- -.-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999888665532 334432 22233333221 2244455554444433 34554322 23356788888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 398 EVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER-NIKL-RDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 398 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
.+++.+-+....|+ .+. +....+.|+ .+..-+++.... .++| +......+..+-...|++..|..--+...+
T Consensus 284 ~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99988887755544 222 223344454 233333332221 1233 445556677777788888877766555543
Q ss_pred cCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC
Q 047492 476 MNKVASENTYIQLIHGFNKS-NRADIAARLLVEMEENGHKPT 516 (806)
Q Consensus 476 ~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~ 516 (806)
. .|....|..|.+.-... |+-.++...+.+.....-.|+
T Consensus 358 ~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 358 E--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred h--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 3 34566677776665544 888888888888877655554
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.36 Score=48.01 Aligned_cols=140 Identities=13% Similarity=-0.038 Sum_probs=91.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR 690 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 690 (806)
.-...|.+.|++..|...|++.... +. +.+.-+.++....... -..+++.+.-.+.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEAL--------KLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHHH--------HHHHhhHHHHHHHhhh
Confidence 3446677777887777777765541 00 1111111221111111 1124455666777888
Q ss_pred cHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--h-cHHHHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--S-EIDHACELF 767 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g-~~~~A~~~~ 767 (806)
++..|......++...+++.-.+..-..+|...|+++.|+..|+++++. .|+......=+..|.+ . ..++..++|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888999999999999999999995 5666666555555544 3 345557888
Q ss_pred HHHHHc
Q 047492 768 NRMRRK 773 (806)
Q Consensus 768 ~~m~~~ 773 (806)
..|-..
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888754
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.30 E-value=0.3 Score=45.66 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=64.8
Q ss_pred CCcccHHHHHHHHH-----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC----------------ChHHHHH
Q 047492 305 PEVFRFNFLVSRLL-----KENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAG----------------MVDVAIE 363 (806)
Q Consensus 305 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------------~~~~a~~ 363 (806)
.|..+|-..+..+. +.+.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+-+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 34445555554443 23445555566667777777777777777776654321 2345788
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHH
Q 047492 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGST-HEAYEVLKNSI 404 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 404 (806)
++++|..+|+.||..+-..|+.++.+.+-. .+..+++-.|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999999876653 33344443443
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.16 E-value=0.1 Score=39.58 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
.+|..+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666543
No 238
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=94.15 E-value=7.3 Score=39.43 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=67.7
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-h
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-S 758 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g 758 (806)
..|+.-|...|++.+|.+.+++.-...-+...+..+++.+.-+.|+...-+.+++..++.| ..|-|.|-++|.+ .
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhhh
Confidence 4466778889999999999999877777788889999999999998877778888877764 5667777777766 2
Q ss_pred c--------HHHHHHHHHHHHHcC
Q 047492 759 E--------IDHACELFNRMRRKG 774 (806)
Q Consensus 759 ~--------~~~A~~~~~~m~~~g 774 (806)
+ ...|.+.|+...+.+
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHH
Confidence 1 233555555555443
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.12 E-value=1.9 Score=46.03 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=102.7
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHCC-CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh----cCChHHHHHHH
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQRSG-LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK----AMKANLAWGFM 629 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~ 629 (806)
...++...+-.|+-+.+++.+.+..+.+ +..... ...++. |...+..++. ..+.+.|.+++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la-~L~LL~-------------y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA-ALVLLW-------------YHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH-HHHHHH-------------HHHHHHHHcCCcccCCCHHHHHHHH
Confidence 4556677777899999999988876532 222221 112221 5555554443 44678899999
Q ss_pred HHHHhCCCCCCHHHHHHHH-HHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCc
Q 047492 630 REMRHNGMYPSMECYEELI-KLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS 708 (806)
Q Consensus 630 ~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 708 (806)
+.+.+ --|+...|...- +.+...|++++|++.++........ +. +-
T Consensus 257 ~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-----~~--------------------------Ql 303 (468)
T PF10300_consen 257 EEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-----WK--------------------------QL 303 (468)
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-----HH--------------------------hH
Confidence 99887 356665554332 3345689999999999876532110 00 01
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--hcH-------HHHHHHHHHHH
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--SEI-------DHACELFNRMR 771 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g~~-------~~A~~~~~~m~ 771 (806)
....+.-+...+.-..++++|.+.|..+.+. ...+...|.-+..+|.- |+. ++|.++|.+..
T Consensus 304 ~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 304 HHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 1223344555666777888888888888775 34445555555544443 766 77777777765
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.99 E-value=0.52 Score=38.42 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=67.0
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChh---hHHHHHHHHhh-hcH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTY---TYNILLRRLSV-SEI 760 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~-g~~ 760 (806)
++...|+++.|++.|.+...-.|...+.||.-..+|.-+|+.++|++-++++.+...+.... .|-.-...|.. |+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45567788888888888887788888889999999999999999999999988853222322 22233344555 888
Q ss_pred HHHHHHHHHHHHcCCC
Q 047492 761 DHACELFNRMRRKGYE 776 (806)
Q Consensus 761 ~~A~~~~~~m~~~g~~ 776 (806)
+.|..=|+..-+.|-+
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 8888877777766654
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.54 Score=46.79 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=71.5
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHH-HHHh
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFD-ILKC 787 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~ 787 (806)
..+++.+...|.+.+++.+|+....+.++.+ ++|+-..---..+|.. |+++.|...|++++.. .|+..... -|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4567788899999999999999999999974 6666666667888888 9999999999999975 56544444 4555
Q ss_pred hhhccCCH-HHHHHHHHhhC
Q 047492 788 GLYNCLRT-DEAERRLEEMF 806 (806)
Q Consensus 788 ~~~~~g~~-~eA~~~l~~m~ 806 (806)
+-.+.... +...+++.+|+
T Consensus 334 l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 54444444 44478888875
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.87 E-value=3.3 Score=43.56 Aligned_cols=132 Identities=13% Similarity=0.091 Sum_probs=84.0
Q ss_pred cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 201 VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 201 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
.-.+.++.-+-+.|..+.|+++..+-. .-.+...+.|+++.|.++.++. .+...|..|...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 346667777777777777777643321 2234556777888777765332 245578888888
Q ss_pred HHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH
Q 047492 281 LVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV 360 (806)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 360 (806)
..+.|+++-|.+.|.+... |..++-.|.-.|+.+...++.+.....|- ++....++.-.|++++
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence 8888888888888877654 66677777778887777777776666542 4555556666677777
Q ss_pred HHHHHHH
Q 047492 361 AIELYKS 367 (806)
Q Consensus 361 a~~~~~~ 367 (806)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.85 E-value=3.2 Score=34.24 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 310 FNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 310 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
+...++.+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444556666777777777777766542 245666666667777777777777777777666664
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.77 E-value=0.81 Score=46.78 Aligned_cols=67 Identities=12% Similarity=-0.102 Sum_probs=52.3
Q ss_pred CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047492 127 YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMR 195 (806)
Q Consensus 127 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (806)
.+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888888888887766 5553 35788888888888888888888888765
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=4.1 Score=37.71 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 620 MKANLAWGFMREMRHN---G--MYPSMECYEELIKLLCSTKNYDMVVGVMNH 666 (806)
Q Consensus 620 ~~~~~A~~~~~~m~~~---g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 666 (806)
.++++|+++|++...- + .+.-...|...-+.+.+...+++|-..+.+
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 3456666666654431 1 112233455566667777777776665544
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.72 E-value=3.4 Score=34.09 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
.....+..+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344455555566666666666665532 23455555566666666666666666666655555
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.39 E-value=8.7 Score=37.82 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=11.9
Q ss_pred HHHcCChHHHHHHHHHH
Q 047492 352 FCKAGMVDVAIELYKSR 368 (806)
Q Consensus 352 ~~~~g~~~~a~~~~~~~ 368 (806)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45677888888777743
No 248
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.31 E-value=5.3 Score=35.14 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=22.7
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 047492 221 EYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLE 259 (806)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (806)
+++..+.+.++.++...+..+++.+.+.|++....++++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445555666666666666666666666555444443
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=7.4 Score=36.08 Aligned_cols=25 Identities=12% Similarity=0.002 Sum_probs=14.7
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHH
Q 047492 555 YNFFIDGAGHVKRPDLARAVYELMQ 579 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~m~ 579 (806)
|.-...+|...+++++|..-+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4445556666666666666555544
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.06 E-value=4 Score=42.15 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
+..++-+.|+.++|++.+.++.+.............|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344444555555544444431111112223334444444445555544444443
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.96 E-value=5.2 Score=36.26 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047492 565 VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECY 644 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 644 (806)
.|-+.-|.-=|.+.. .+.|+... .||.+.--+...|+++.|.+.|+...+....-+-...
T Consensus 78 lGL~~LAR~DftQaL--ai~P~m~~------------------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 78 LGLRALARNDFSQAL--AIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred hhHHHHHhhhhhhhh--hcCCCcHH------------------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 355555555555544 45676654 5999999999999999999999999984322233333
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc--cHHHHHHHHHhhhhccCcchhhHHH-HHHhhh
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR--DLYEAWIRLRGMLINEQSKISLLGQ-LIGVFS 721 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~ 721 (806)
+.-| ++.-.|++.-|.+-+-..-+.+.. |+ ...+|.|+... +..+|..-+.+-.. ..+..-|+. ++..|.
T Consensus 138 NRgi-~~YY~gR~~LAq~d~~~fYQ~D~~-DP---fR~LWLYl~E~k~dP~~A~tnL~qR~~--~~d~e~WG~~iV~~yL 210 (297)
T COG4785 138 NRGI-ALYYGGRYKLAQDDLLAFYQDDPN-DP---FRSLWLYLNEQKLDPKQAKTNLKQRAE--KSDKEQWGWNIVEFYL 210 (297)
T ss_pred ccce-eeeecCchHhhHHHHHHHHhcCCC-Ch---HHHHHHHHHHhhCCHHHHHHHHHHHHH--hccHhhhhHHHHHHHH
Confidence 3222 233578999998877777665432 22 22345555433 34444444433332 334344433 333333
Q ss_pred ccccchhhHHHHHHHHHcCCCCC-------hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLD-------TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.+-.. ..+++++..- -..+ ..||--|.+-+.. |+.++|..+|+-....
T Consensus 211 gkiS~---e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 211 GKISE---ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccH---HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22211 2334444332 1212 3467777777888 9999999999877755
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.93 E-value=0.97 Score=42.70 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=54.5
Q ss_pred hccccHHHHHHHHHhhhhccCcchhh---HHHHHHhhhccccchhhHHHHHHHHHcC--CCCChhhHHHHHHHHhh-hcH
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISL---LGQLIGVFSGCIKVSQDIEGLQKMIEQC--FPLDTYTYNILLRRLSV-SEI 760 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~-g~~ 760 (806)
+++|++..|...|.....+.|.+..+ +..|..++...|++++|..+|..+.+.- .+.-+..+--|..+... |+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34455555555555555555544433 3346677778888888888888777741 11223455555556666 888
Q ss_pred HHHHHHHHHHHHc
Q 047492 761 DHACELFNRMRRK 773 (806)
Q Consensus 761 ~~A~~~~~~m~~~ 773 (806)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888765
No 253
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.92 E-value=18 Score=40.24 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=36.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhc---
Q 047492 488 LIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH--- 564 (806)
Q Consensus 488 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 564 (806)
....+.-.|+++.|++++-+ ..+...+.+.+...+..+.-..-.......++.....+ +.+.-+..+|..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~--~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGD--PPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCC--CCCcCHHHHHHHHHHHHh
Confidence 34445556777777777665 22234445545444444332222111111111111111 111446666766665
Q ss_pred CCChHHHHHHHHHHHHC
Q 047492 565 VKRPDLARAVYELMQRS 581 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~~ 581 (806)
..++.+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777766643
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.59 E-value=1.8 Score=40.88 Aligned_cols=105 Identities=12% Similarity=-0.037 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMY--PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLL 683 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 683 (806)
.|+.-+.. .+.|++.+|...|...++.... -....+--|..++...|++++|..+|..+.+.-.+.. +-..--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 37665554 4678899999999999985211 1223344588999999999999999999877543221 12333344
Q ss_pred HHhhccccHHHHHHHHHhhhhccCcchhhH
Q 047492 684 LHALKTRDLYEAWIRLRGMLINEQSKISLL 713 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 713 (806)
......|+.++|+.+++++....|......
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 456677777888877777776666655443
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.30 E-value=3.3 Score=35.09 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHhc--cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 047492 98 TFHAIFKLLHCAKLTPLMVDFLENYKKD--RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175 (806)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 175 (806)
.+..-.....+.|++..|.+.|+.+..+ ..+-...+--.++.+|-+.+++++|+..+++..+......-.-|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3333344445666777777777777665 11223344445666677777777777777777665322222344444444
Q ss_pred HH
Q 047492 176 LV 177 (806)
Q Consensus 176 ~~ 177 (806)
++
T Consensus 92 L~ 93 (142)
T PF13512_consen 92 LS 93 (142)
T ss_pred HH
Confidence 44
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=8.3 Score=37.52 Aligned_cols=153 Identities=8% Similarity=-0.045 Sum_probs=94.2
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhC-C--CCCCHHhHHHHHHHHHhcCCHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG-R--ECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
...|...+|...++++.+..|.+-.++.-.-.+|.-.|+.+.....++++... + .+-.+.+-..+.-++..+|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34667777777778887777667777777777888888888888888877754 2 21122223334445556788888
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE---VFRFNFLVSRLLKENRLMEVFDLF 330 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~ 330 (806)
|++.-++..+. .+.|...-.+..+.+--.|+..++.++..+-..... ..+ ..-|-...-.+...+.++.|+++|
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88887776653 233445556666777777888888887766433111 000 011112222344557777888877
Q ss_pred HH
Q 047492 331 MD 332 (806)
Q Consensus 331 ~~ 332 (806)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
No 257
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.08 E-value=7.6 Score=33.87 Aligned_cols=123 Identities=16% Similarity=0.069 Sum_probs=63.6
Q ss_pred HhcCChhhHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CCcc---chHHHHHHhhccCCH
Q 047492 142 ALAGKPDIALHLFGKMRFQGMDLDDY-AYHVLLNALVEQGCFDAVAVVSKQISMRGF-ENDV---TRTIMLKCLCKQKKI 216 (806)
Q Consensus 142 ~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~li~~~~~~g~~ 216 (806)
++.++.++|+.-|..+.+.|...=+. .--.+.......|+...|...|+++-.... |-.. ....-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34556666666666666554332111 111112234456666666666666654432 2111 111122234456666
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR 264 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 264 (806)
++...-.+-+...+.+.-...-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666655554444334444555666666777777777777776654
No 258
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=0.54 Score=44.78 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=72.4
Q ss_pred CCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhcc-----CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC
Q 047492 91 HFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDR-----YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD 165 (806)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 165 (806)
|.+++..+....+.......+++.+...+-.++... ...+..+|-.++. .-++++++.++..=.+.|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 455566666667777676777888888877776641 1122333333333 2367788888888888999999
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 047492 166 DYAYHVLLNALVEQGCFDAVAVVSKQISMRGF 197 (806)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (806)
.++++.+++.+.+.+++..|..+.-+|.....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877777665543
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=5.1 Score=38.89 Aligned_cols=149 Identities=5% Similarity=-0.052 Sum_probs=66.7
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch----hhHHHHHHhhhccccchh
Q 047492 653 STKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI----SLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 728 (806)
-.|+.-+|...++++++. ++.|....+..=.++.-.|+.......+++....-.++. .+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555543 233333333334445555555555555555543222222 222333333345666666
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc---CCCCChhhHHHHHhhhhccCCHHHHHHHHH
Q 047492 729 DIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK---GYEPDQWTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
|++..++..+. .+.|...-.+....+.. |++.++.+...+-.+. |--.-...|-+..-.+...+.++.|+++++
T Consensus 194 AEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66666655554 13333333344444444 6666665554332211 111111223333333444566666666554
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.81 E-value=14 Score=36.36 Aligned_cols=227 Identities=16% Similarity=0.067 Sum_probs=128.9
Q ss_pred hcCCChHHHHHHHHHHHHCC--CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 047492 563 GHVKRPDLARAVYELMQRSG--LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN----- 635 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 635 (806)
.+.|+.+.|...+.+..... ..|+... .+-.. .|+.-.+.+.+..++++|...+++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~--~La~~-----------~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~ 70 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE--ELARV-----------CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG 70 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH--HHHHH-----------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh
Confidence 46789999999999987532 2333322 22221 1655555554444888887777665442
Q ss_pred ---CCCCC-----HHHHHHHHHHHHcCCChh---HHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhh
Q 047492 636 ---GMYPS-----MECYEELIKLLCSTKNYD---MVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLI 704 (806)
Q Consensus 636 ---g~~p~-----~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 704 (806)
...|+ ..++..++.+|...+..+ +|..+++.+..... ..+.++-.-+..+.+.++.+++.+.+.++..
T Consensus 71 ~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 71 KMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred hccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 22333 245777888888777654 45666666654433 2344444555666668999999999999998
Q ss_pred ccCcchhhHHHHHHhhh--ccccchhhHHHHHHHHHcCCCCChh-hHHHHHHH----Hhh-hc------HHHHHHHHHHH
Q 047492 705 NEQSKISLLGQLIGVFS--GCIKVSQDIEGLQKMIEQCFPLDTY-TYNILLRR----LSV-SE------IDHACELFNRM 770 (806)
Q Consensus 705 ~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~----~~~-g~------~~~A~~~~~~m 770 (806)
........+...+..+. .......|...+..++...+.|... ....++-. ... ++ .+...++++..
T Consensus 150 ~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 150 SVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred hcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 77755555655555542 1123345666666666544554443 11111111 111 11 34444455543
Q ss_pred HHc-CCCCChhhHHHH-------HhhhhccCCHHHHHHHHH
Q 047492 771 RRK-GYEPDQWTFDIL-------KCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 771 ~~~-g~~p~~~~~~~l-------~~~~~~~g~~~eA~~~l~ 803 (806)
... +.+.+..+-.++ +..+.+.+++++|.++++
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 322 333344333322 344667999999999987
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.66 E-value=1 Score=43.27 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=61.1
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHH
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFD 783 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 783 (806)
..++..++..+..+|+.+.+.+.+++..+. -+-+...|..++.+|.+ |+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345667788888888888888888888886 36677788888888888 888888888887775 48888887777
Q ss_pred HHHhhh
Q 047492 784 ILKCGL 789 (806)
Q Consensus 784 ~l~~~~ 789 (806)
.+..++
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666653
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.53 E-value=0.36 Score=31.44 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=7.6
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 047492 138 VMGYALAGKPDIALHLFGKM 157 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m 157 (806)
...|.+.|++++|+++|++.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.43 E-value=2.3 Score=34.89 Aligned_cols=88 Identities=14% Similarity=-0.064 Sum_probs=42.0
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH---hHHHHHHHHHhcCCHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF---MIGIVVDALCKNSRFE 252 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 252 (806)
++..|+.+.|++.|.+....-+.....||.-..++.-.|+.++|.+=+++..+.....+.. .|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3445555555555555555444455555555555555555555555555544432211111 1222223344556666
Q ss_pred HHHHHHHHhhh
Q 047492 253 QAGKLLEDFKD 263 (806)
Q Consensus 253 ~A~~~~~~~~~ 263 (806)
.|..-|+..-+
T Consensus 133 ~AR~DFe~AA~ 143 (175)
T KOG4555|consen 133 AARADFEAAAQ 143 (175)
T ss_pred HHHHhHHHHHH
Confidence 66555555433
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.37 E-value=9.2 Score=33.39 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCcc--chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH-hHHH--H
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDV--TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF-MIGI--V 241 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~--l 241 (806)
.+|...+. +++.+..++|+.-|..+.+.|..+-. ............|+...|...|+++-.-...|-.. -... -
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 34566778888888888887764322 33344455677888888888888887655444322 1111 1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 242 VDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
.-.+...|.+++.....+-+... +.+.-...-..|--+-.+.|++.+|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22345678888877777766544 3333333334455555677777777777777765
No 265
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.28 E-value=29 Score=38.97 Aligned_cols=228 Identities=11% Similarity=-0.040 Sum_probs=126.6
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHH-HHhcCChHHHHHHHHHHHhC----C
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVG-LCKAMKANLAWGFMREMRHN----G 636 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~----g 636 (806)
.....++++|..++.+....=-.|+...-..+. ..|+.+-.. ....|++++|..+.+...+. -
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~------------ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLL------------AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 345688999999998877542233222111111 124443322 34478899999988887763 2
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH-----Hhhcccc--HHHHHHHHHhhh----hc
Q 047492 637 MYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL-----HALKTRD--LYEAWIRLRGML----IN 705 (806)
Q Consensus 637 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~----~~ 705 (806)
..+....+..+..+..-.|++++|..+.....+.....+++.+..... .+...|. ..+....+.... ..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 334556677777777889999999999998887766666655544332 2334452 222223232222 12
Q ss_pred cCcch---hhHHHHHHhhhccccchhhHHHHHHHHHcC----CCCChhhHH--HHHHHHhh-hcHHHHHHHHHHHHHcCC
Q 047492 706 EQSKI---SLLGQLIGVFSGCIKVSQDIEGLQKMIEQC----FPLDTYTYN--ILLRRLSV-SEIDHACELFNRMRRKGY 775 (806)
Q Consensus 706 ~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~--~li~~~~~-g~~~~A~~~~~~m~~~g~ 775 (806)
.+... .+...+..++.+ .+.+..-.....+.| ..|-...+. .|...... |+.++|....+++.....
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 22222 223333344433 444444333333332 122222222 55566666 999999999999886643
Q ss_pred CC----ChhhHHHHHhh--hhccCCHHHHHHHHHh
Q 047492 776 EP----DQWTFDILKCG--LYNCLRTDEAERRLEE 804 (806)
Q Consensus 776 ~p----~~~~~~~l~~~--~~~~g~~~eA~~~l~~ 804 (806)
.+ +-.+-...+.. ....|+.++|...+.+
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 33 33333333333 3568998888887765
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=91.25 E-value=5.3 Score=41.18 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHc---------CCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc
Q 047492 622 ANLAWGFMREMRH-NGMYPS-MECYEELIKLLCS---------TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR 690 (806)
Q Consensus 622 ~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 690 (806)
.+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+..+...+.+ ..|+...-.+.....-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4678888988883 236665 3344444333321 123345666666666665 345555555555566667
Q ss_pred cHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh---hhHHHHHHHHhhhcHHHHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT---YTYNILLRRLSVSEIDHACELF 767 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~g~~~~A~~~~ 767 (806)
+...|...|+++..-.|....++........-+|+.++|.+.+++..+. .|.. ......++.|.....++|+++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 7888888888888777877777777777777788888888888887774 3332 2222334455556677777776
Q ss_pred HH
Q 047492 768 NR 769 (806)
Q Consensus 768 ~~ 769 (806)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 44
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.14 E-value=17 Score=35.97 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH
Q 047492 395 EAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
++.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4555555555555555544443
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=91.11 E-value=6 Score=40.83 Aligned_cols=81 Identities=9% Similarity=-0.147 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh-hcHHHHHHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
..+..+|.+..+.+.+-.+.|......+..+....++.+.|...|+++... .|| ...|-.....+.. |+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345566666666666666667666666666666666677777777776664 333 3344444444455 777777766
Q ss_pred HHHHH
Q 047492 767 FNRMR 771 (806)
Q Consensus 767 ~~~m~ 771 (806)
+++..
T Consensus 395 i~~al 399 (458)
T PRK11906 395 IDKSL 399 (458)
T ss_pred HHHHh
Confidence 66644
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.90 E-value=7.1 Score=33.17 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=38.2
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCc---cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFEND---VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALC 246 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (806)
.+.|++++|.+.|+.+..+.+.+. .+...++.+|.+.|++++|...++..++..+.....-|-..+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 355566666666666665554322 2455556666666666666666666666554433344444444443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.66 E-value=0.94 Score=29.45 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 047492 451 DKFISALCKANKVEVGYLIHSELSRMNK 478 (806)
Q Consensus 451 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 478 (806)
..+...|...|++++|.++++...+..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3344444444444444444444444433
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.65 E-value=19 Score=35.66 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH--cC----ChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCC-
Q 047492 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK--AG----MVDVAIELYKSRSEFGL---SPNGIVYNYLINSLCGDGS- 392 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 392 (806)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888887777666554333332 11 24567777777776432 1333445555433 2222
Q ss_pred ---hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 393 ---THEAYEVLKNSIDHGLFPGKK--TLSILADALCRDGK--FEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 393 ---~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
.+.+..+|+.+.+.|...+.. ....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 244566666666656543322 22222222211111 33566666666666666665555443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.56 E-value=7.2 Score=40.16 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC---ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 745 TYTYNILLRRLSV-SEIDHACELFNRMRRKGYEP---DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 745 ~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
..+|..++..+.+ |.++.|...+.++...+... +..........+-..|+.++|...+++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456666666666 66666666666666543211 122222334445556666666666654
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.51 E-value=12 Score=33.07 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALER- 441 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 441 (806)
+.++.+.+.+++|+...+..+|+.+.+.|++. .+..+...++.+|.......+-.+.. ....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 44555666777777777777777777777654 34445556666666665554433322 223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 442 NIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 442 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+ ..+..+++.+...|++-+|.++.+..... +......++.+-.+.++...-..+++-..+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 13445666677777777777776654222 122234455555555555444444444443
No 274
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.35 E-value=3.2 Score=40.00 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhHHH
Q 047492 448 VTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRALHRA 522 (806)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 522 (806)
.++..++..+...|+.+.+...++++....+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35666777888888888888888888877766 788888888888888888888888888765 477776665444
Q ss_pred HHHH
Q 047492 523 VIRC 526 (806)
Q Consensus 523 ll~~ 526 (806)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.17 E-value=9.1 Score=34.79 Aligned_cols=80 Identities=15% Similarity=0.025 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 047492 189 SKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVV 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (806)
|.+.....+.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|+++-|.+-|...-+.+...
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCC
Confidence 3333333343444556555556666666666666666665554333223332222 223466666655555444432333
Q ss_pred c
Q 047492 269 K 269 (806)
Q Consensus 269 ~ 269 (806)
|
T Consensus 167 P 167 (297)
T COG4785 167 P 167 (297)
T ss_pred h
Confidence 3
No 276
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.10 E-value=22 Score=34.28 Aligned_cols=117 Identities=6% Similarity=0.020 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhHh-CCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHH
Q 047492 215 KIDEAVEYFQQLVS-GRECVSGFMIGIVVDALCK-NS-RFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLAL 291 (806)
Q Consensus 215 ~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (806)
-+.+|.++|+..-. ..+--|..+...+++.... .+ ....-.++.+-+....+..++..+...++..+++.++|.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555565553221 2233455555555554444 11 122222333333332245555566666666666666666666
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 047492 292 EFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFM 331 (806)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (806)
++++......+..-|...|..+|......|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 6666655433444566666666666666666554444443
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.94 E-value=1.9 Score=43.79 Aligned_cols=127 Identities=7% Similarity=-0.016 Sum_probs=80.2
Q ss_pred HHHHcCCChhHHHHHHHHH-HhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccch
Q 047492 649 KLLCSTKNYDMVVGVMNHL-EGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVS 727 (806)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 727 (806)
.-....|++-.|.+-+... ....-.|+-....+ ......|+++.+...+..+.........+...++....+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 3344577777766544444 33333333322222 23446688888888888887777777777888888888888888
Q ss_pred hhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC
Q 047492 728 QDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD 778 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~ 778 (806)
+|....+-|....+. +...........-. |-+++++..|+++...+.+-+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 888888888775433 23322222222233 788888888888876644333
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.93 E-value=5.3 Score=34.64 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=26.8
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 703 (806)
-.+.++.+++..+++.+.-..+.... .--.-.+.++..|++.+|.++++++.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPE-LDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34577888888888877665433221 11112233444455555555544443
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.51 E-value=23 Score=33.56 Aligned_cols=22 Identities=5% Similarity=-0.124 Sum_probs=11.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 047492 315 SRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
-++.+.+++++|+..+++....
T Consensus 79 yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 79 YAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 3444555555555555554443
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.49 E-value=23 Score=33.55 Aligned_cols=56 Identities=14% Similarity=-0.067 Sum_probs=36.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYP---SMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
+..-|.+.|.+-.|..-+++|++. .+- ....+..+..+|...|..++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445567777777777777777774 222 23445566677777777777777655543
No 281
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.46 E-value=25 Score=33.99 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHc-C-CHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 047492 251 FEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRA-G-RLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFD 328 (806)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 328 (806)
+.+|+.+|+.......+.-|..+...+++..... + ....--++.+-+....+..++..+...+|..++..++|.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555553222113444455555555554441 1 1122222222233223334444455555555555555555555
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 047492 329 LFMDMKEG-QISPDGVTMNTVLCFFCKAGMVDVAIELYK 366 (806)
Q Consensus 329 ~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 366 (806)
+++..... +..-|...|..+|+.....|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 55544433 333355555555555555555444444433
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.35 E-value=16 Score=38.03 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
+-..+..++.+.|+.++|.+.|++|.+......+......++.++...+.+.++..++.+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445566667788888888888776542222334566777888888888888888777754
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=26 Score=33.91 Aligned_cols=120 Identities=14% Similarity=0.002 Sum_probs=54.9
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047492 352 FCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQM 431 (806)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 431 (806)
....|++.+|..+|+...+.. +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566666666666655432 1223344455666666666666666666654332111111111122223333333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047492 432 KDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474 (806)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 474 (806)
..+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3332222211 2244444455555555666666655444443
No 284
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.10 E-value=0.027 Score=49.07 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=50.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHc
Q 047492 205 IMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRA 284 (806)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (806)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+..+++++... . .....+++.|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhc
Confidence 3456666677777777777777766655666777777777777777677666665211 1 1223445555555
Q ss_pred CCHHHHHHHHHhh
Q 047492 285 GRLDLALEFLKSK 297 (806)
Q Consensus 285 g~~~~a~~~~~~~ 297 (806)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 5555555555543
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.06 E-value=0.52 Score=29.00 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=10.7
Q ss_pred HHHHHhhhhccCCHHHHHHHHHh
Q 047492 782 FDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 782 ~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
+..|..+|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555443
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.72 E-value=43 Score=35.86 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=27.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK 655 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 655 (806)
.++.+.|..++.++.+. +.++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 67788999999998874 5567777888877766554
No 287
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.28 E-value=45 Score=35.68 Aligned_cols=102 Identities=15% Similarity=-0.055 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCChhHHH---HHHHHHHhCCCCCCchhHHHHH-----HHhhcc
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMEC-YEELIKLLCSTKNYDMVV---GVMNHLEGHGRQVTSFIGNTLL-----LHALKT 689 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~ 689 (806)
.|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+. +++..... |..... +.+.+. ..+.-.
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~-i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNG-ILEKLYVKFARLRYKIR 454 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcc-hhHHHHHHHHHHHHHHh
Confidence 678888888888888752 44321 112233445677777776 33333322 211111 111111 123346
Q ss_pred ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc
Q 047492 690 RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI 724 (806)
Q Consensus 690 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 724 (806)
++.+.|...+.++....|++...+..+++....++
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 77788888888887777777777777776655443
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.20 E-value=67 Score=37.57 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 047492 413 KTLSILADALCRDG--KFEQMKDLVIFALE 440 (806)
Q Consensus 413 ~~~~~ll~~~~~~g--~~~~a~~~~~~~~~ 440 (806)
.....+|.+|.+.+ .++++.+...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34445666666665 45555555555443
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.07 E-value=0.43 Score=28.90 Aligned_cols=26 Identities=4% Similarity=-0.011 Sum_probs=13.0
Q ss_pred hccCcchhhHHHHHHhhhccccchhh
Q 047492 704 INEQSKISLLGQLIGVFSGCIKVSQD 729 (806)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~g~~~~A 729 (806)
+..|.+...|+.+...|...|+.++|
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555555444
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.47 E-value=1.5 Score=26.94 Aligned_cols=25 Identities=12% Similarity=-0.079 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMR 633 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~ 633 (806)
|..|...|.+.|++++|+.+|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666633
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.08 E-value=17 Score=35.22 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
.++++.++..=++-|+-||.++++.+|+.+.+.+++.+|.++.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555544444443
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.56 E-value=7.6 Score=34.97 Aligned_cols=98 Identities=6% Similarity=-0.097 Sum_probs=64.1
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047492 554 IYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMR 633 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 633 (806)
.+..+.+.|.+.|+.++|.+.|.++.+....+.... ..+-.+|..+...+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~i-----------------d~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKI-----------------DMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 477788889999999999999999887655544432 136678888888999998888877766
Q ss_pred hC---CCCCCHHHHHHHHHH--HHcCCChhHHHHHHHHHH
Q 047492 634 HN---GMYPSMECYEELIKL--LCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 634 ~~---g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 668 (806)
.. |-.++...--....+ +...+++.+|-+.|-...
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 52 222222211111111 234677777777665553
No 293
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.12 E-value=71 Score=35.85 Aligned_cols=195 Identities=8% Similarity=0.039 Sum_probs=100.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCC--ChhhHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCHH---
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMK-EGQISP--DGVTMNTVLCFFC-KAGMVDVAIELYKSRSEFGLSPNGI--- 378 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~--- 378 (806)
+...|..+|. .|++.++-+. +..+.| +..++--+...+. ...+++.|+..+.+....--.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 3455555555 333333 2344455555554 5677888888887654321112221
Q ss_pred --HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHH
Q 047492 379 --VYNYLINSLCGDGSTHEAYEVLKNSIDH----GLFPGKKTLSIL-ADALCRDGKFEQMKDLVIFALERN---IKLRDV 448 (806)
Q Consensus 379 --~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 448 (806)
....++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234556666666555 77777776542 222233334433 222223368888888887765532 234444
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHhhcCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 047492 449 TYDKFISALC--KANKVEVGYLIHSELSRMNK---------VASENTYIQLIHGFN--KSNRADIAARLLVEMEE 510 (806)
Q Consensus 449 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~ 510 (806)
++..++.+.. ..+..+++.+..+.+..... .|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444544443 34555666666655532111 224455666666544 46776666666665543
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.97 E-value=16 Score=32.88 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 238 IGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
+..+.+.|++.|+.+.|.+.|.++.+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34444444444444444444444443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.79 E-value=0.89 Score=27.51 Aligned_cols=28 Identities=14% Similarity=-0.008 Sum_probs=13.2
Q ss_pred HHhcCCCCccchHHHHHHhhccCCHHHH
Q 047492 192 ISMRGFENDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 192 ~~~~~~~~~~~~~~li~~~~~~g~~~~a 219 (806)
..+..|.+..+|+.+...|...|++++|
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3333444444555555555555554444
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.79 E-value=44 Score=33.23 Aligned_cols=165 Identities=15% Similarity=0.076 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhh
Q 047492 273 AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEV---FRFNFLVSRLLKENRLMEVFDLFMDMKEGQI-----SPDGVT 344 (806)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~ 344 (806)
.|..+.+++-+.-++.+++.+-+.-....|..|.. ...-++-+++...+.++++++.|+...+--. .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 34444555555555555555555544444444421 1122334555556666777776665543211 112345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHH----hCCCCCC
Q 047492 345 MNTVLCFFCKAGMVDVAIELYKSRSE----FGLSPNGIVYNY-----LINSLCGDGSTHEAYEVLKNSI----DHGLFPG 411 (806)
Q Consensus 345 ~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~----~~~~~p~ 411 (806)
+..|-..|.+..|+++|.-+.....+ .++..-..-|.. |.-++-..|...+|.+.-++.. +.|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66666666666777666555444322 222111112222 2234445555555555554433 2332211
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 412 -KKTLSILADALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 412 -~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (806)
......+.+.|...|+.+.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 11223344555556666665555544
No 297
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.57 E-value=37 Score=37.58 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047492 397 YEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSE 472 (806)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 472 (806)
...++.+..+-...+......++..|.+.|-.+.+.++.+.+-..-+ ...-|..-+..+.++|+...+..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33333333332333455556666666666666666666665544321 122344455555566665554444433
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.07 E-value=42 Score=32.36 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+++.....|..+|.+.+|.++.+.....++. +...|-.++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667888999999999999888877655 777888999999999998888888777754
No 299
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.06 E-value=48 Score=33.02 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRM-NKVA---SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (806)
|..+.+++-+..++.+++.+-...... +..| -.....++..++...+.++++++.|+...+--...
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~---------- 155 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN---------- 155 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc----------
Confidence 344445555555555555544433221 1111 11122345566666677788888777665411100
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH----CCCccCcchhHHHHHHHHhhh
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR----SGLVPQLGSNILMLQSYLKRK 601 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~~~~~~~~~~ 601 (806)
........+|..+...|...+++++|.-+..+..+ .++.--..-|..+.
T Consensus 156 --------------------~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~------- 208 (518)
T KOG1941|consen 156 --------------------DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS------- 208 (518)
T ss_pred --------------------CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH-------
Confidence 01122345678888888888899888776655442 22221111111111
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 602 NGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH----NGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 602 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
...|.-++...|....|.+.-++..+ .|-++ -..+...+.+.|-..|+.|.|..-++...
T Consensus 209 -------lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 209 -------LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred -------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33566677788888888887776554 45333 23345667778888999998887777654
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.82 E-value=39 Score=31.77 Aligned_cols=201 Identities=18% Similarity=0.112 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEG-QISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN- 385 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 385 (806)
..+......+...+++..+...+...... ........+......+...+....+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444455555556666555555554431 122334444445555555556666666666655432222 111111222
Q ss_pred HHHcCCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 386 SLCGDGSTHEAYEVLKNSIDHGL--FPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666777777777776644211 1122233333333555667777777777666553111355666666667777777
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+.+...+......... ....+..+...+...+..+.+...+.+...
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777766654432 233344444444455667777777776665
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.15 E-value=9.3 Score=29.99 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 047492 114 LMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175 (806)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 175 (806)
.+.+-+..+......|++.+..+.+.+|.|.+++..|+++|+..+.. +.+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45566777777777888888888888888888888888888887644 12222266666643
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.80 E-value=60 Score=33.26 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALE 440 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (806)
..+.-+.|+++...++....... .++...+..+... ..++.+++...++.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566677777644444443322 1233334333333 56666666666665543
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.35 E-value=2.4 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 366777777777888888877777766
No 304
>PRK09687 putative lyase; Provisional
Probab=81.94 E-value=55 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=12.0
Q ss_pred ccchHHHHHHhhccCCH----HHHHHHHHHh
Q 047492 200 DVTRTIMLKCLCKQKKI----DEAVEYFQQL 226 (806)
Q Consensus 200 ~~~~~~li~~~~~~g~~----~~a~~~~~~~ 226 (806)
...-...+.+++..|+. .++...+..+
T Consensus 68 ~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 68 PIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 33444444455555542 2344444444
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.62 E-value=10 Score=29.36 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=40.3
Q ss_pred hHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc-CCCCChhhHHHHHHH
Q 047492 113 PLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ-GMDLDDYAYHVLLNA 175 (806)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~ 175 (806)
-.+.+-+..+......|++.+..+.+++|.+.+++..|+++|+..+.. |. +...|..+++-
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 345556666666677777888888888888888888888888877632 21 33356555543
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.62 E-value=1 Score=39.05 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred hhccccHHHHHHHHHhhhhc-cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLIN-EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
+.+.+.......+++..... ...+....+.++..|++.++.++.++.++ ..+..-...++..|.+ |.+++|
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTSHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcchHHHH
Confidence 33444444444455554422 23334455556666665555444444443 1122333444555555 555555
Q ss_pred HHHHHHHH
Q 047492 764 CELFNRMR 771 (806)
Q Consensus 764 ~~~~~~m~ 771 (806)
..++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 55555443
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.52 E-value=47 Score=31.14 Aligned_cols=204 Identities=19% Similarity=0.112 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLC- 350 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~- 350 (806)
..+......+...+++..+...+...............+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 334444444555555555555544443210111223333344444445555555555555555432222 111111112
Q ss_pred HHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 351 FFCKAGMVDVAIELYKSRSEFGL--SPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF 428 (806)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 428 (806)
.+...|+++.|...+........ ......+......+...++.+.+...+.+............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666543110 0122233333333455666666666666666542211245555666666666667
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
+.+...+......... ....+..+...+...+..+.+...+.......
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777666554311 23333333344445556677776666665543
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.37 E-value=24 Score=32.04 Aligned_cols=71 Identities=7% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc---CCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 115 MVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ---GMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|...+.+.|+++.|-
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444444444444455555555555554 56677777777776543 23566777777777777777776653
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.33 E-value=99 Score=34.74 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=73.0
Q ss_pred hhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 81 KFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
++..++.+.++.+.....-...+..+++.+++..+.++... .+.+...-.....+....|+.++|......+-..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 56667777787777777777888888888888877663321 2456666677788888899988888888888766
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchH
Q 047492 161 GMDLDDYAYHVLLNALVEQGCFDAV 185 (806)
Q Consensus 161 ~~~p~~~~~~~ll~~~~~~~~~~~a 185 (806)
|. ..+..++.++..+.+.|.....
T Consensus 159 g~-~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 159 GK-SLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred CC-CCChHHHHHHHHHHHcCCCCHH
Confidence 53 3567888899888887766543
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.04 E-value=4 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777665
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.40 E-value=39 Score=29.50 Aligned_cols=53 Identities=13% Similarity=-0.085 Sum_probs=27.1
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
.+.++.+.+..++.-++.-.+ .....-..-...+.++|+|.+|+.+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566666666666655311 11112122233455666677777777766544
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.31 E-value=54 Score=31.06 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhc------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 452 KFISALCKANKVEVGYLIHSELSRM------------NKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 452 ~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|-..|...|.+.+..++++++... |.. -...|..=|..|....+-.+...++++...
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 3444555555555555555554321 111 234566666777766666666666666543
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.82 E-value=17 Score=28.33 Aligned_cols=61 Identities=8% Similarity=-0.104 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 147 PDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 147 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
.-++.+-++.+....+.|++....+.+++|.+.+++..|..+++.++.....+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3455666677777777888888888888888888888888888877744222333444443
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.45 E-value=9.1 Score=30.04 Aligned_cols=60 Identities=8% Similarity=-0.067 Sum_probs=40.4
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHH
Q 047492 149 IALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLK 208 (806)
Q Consensus 149 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 208 (806)
+..+-++.+-...+.|++....+.+++|.+.+++..|..+++.++..-.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 556667777777788888889999999988888888888888887664333335555543
No 315
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=1.3e+02 Score=34.71 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=35.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCH-HhHHHHHH---HHHhcCCHHHHHHHHHHhhhC
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSG-FMIGIVVD---ALCKNSRFEQAGKLLEDFKDR 264 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~---~~~~~g~~~~A~~~~~~~~~~ 264 (806)
+..=+..+....++++|..+-+.....+..... ..+..... -+...|++++|++.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 555566666667777777766655443221111 11111222 245678888888888887654
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.43 E-value=3.9 Score=24.38 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
|..+...+...|++++|+..|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55666777777777777777777665
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.27 E-value=1.2e+02 Score=33.99 Aligned_cols=54 Identities=11% Similarity=-0.136 Sum_probs=31.4
Q ss_pred hcCCChHHHHHHHHHHHHCCC-ccCcchhHHHHHHHHhhhCCCCchhHHHHHHH--HHhcCChHHHHHHHH
Q 047492 563 GHVKRPDLARAVYELMQRSGL-VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVG--LCKAMKANLAWGFMR 630 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~ 630 (806)
.-.+++..|...++.|.+... .|+... . ....+..++.| +...|+.+.|+..|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~-------------~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLY-E-------------SLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchh-h-------------hhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345789899999998885321 121100 0 00013333333 344789999999998
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.16 E-value=43 Score=28.73 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047492 284 AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
.++.+++..+++.+.-...-.+...+|...+ +...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4444445444444433222222333333333 34566666666666666554
No 319
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.14 E-value=58 Score=30.32 Aligned_cols=34 Identities=6% Similarity=0.108 Sum_probs=20.7
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 633 RHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 633 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
...+++-+...+..++ +...|+..+|...++...
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTV 219 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHh
Confidence 3345665555555554 556777777777666654
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.97 E-value=6.2 Score=23.42 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777776665
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.55 E-value=1.3e+02 Score=33.30 Aligned_cols=117 Identities=18% Similarity=0.132 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCChhHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK-AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSL--CGDGSTHEAYE 398 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~ 398 (806)
+.+.|..++....+.|. |+...+-..+..... ..+...|.++|....+.|. +....+-.++... ....+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 45556666666666554 343333322222222 2345667777776666552 2222221111111 12235566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 399 VLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 399 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
++++.-+.| .|-..--...+..+.. +..+.+.-.+..+.+.|
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 666666665 2222222222222222 45555544444444443
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.48 E-value=3.1 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=15.2
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
+++.|...|...|++++|+.+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555666666666666666665554
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.17 E-value=4 Score=22.76 Aligned_cols=23 Identities=35% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHhhhhccCCHHHHHHHHHh
Q 047492 782 FDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 782 ~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
...+..++...|+.++|.+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 34567777888888888877753
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.09 E-value=1.3e+02 Score=33.20 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=75.2
Q ss_pred HhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 318 LKENRLMEVFDLFMDMKE-------GQISPDGVTMNTVLCFFCKAG-----MVDVAIELYKSRSEFGLSPNGIVYNYLIN 385 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 385 (806)
....+.+.|+.+|+...+ .| +......+-.+|.+.. +.+.|..+|....+.|. |+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 345566666666666655 44 3334555555665533 45667777777776663 44443322222
Q ss_pred HHHc-CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047492 386 SLCG-DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC--RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK 462 (806)
Q Consensus 386 ~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 462 (806)
.... ..+...|.++|...-+.|.. ....+..++.... -..+.+.|..++++..+.| .|...--...+..+.. +.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 2222 24566777777777776643 2222222211111 2235666777777766666 3332222222233333 45
Q ss_pred hhHHHHHHHHHhhc
Q 047492 463 VEVGYLIHSELSRM 476 (806)
Q Consensus 463 ~~~a~~~~~~~~~~ 476 (806)
.+.+...+..+...
T Consensus 413 ~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 413 YDTALALYLYLAEL 426 (552)
T ss_pred ccHHHHHHHHHHHh
Confidence 55544444444433
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.65 E-value=20 Score=32.54 Aligned_cols=71 Identities=7% Similarity=-0.065 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHHHHHHHHHc---CCCCChhhHHHHHhhhhccCCHHHH
Q 047492 728 QDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRK---GYEPDQWTFDILKCGLYNCLRTDEA 798 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~eA 798 (806)
.|...|-++...+.-.++.....|..-|.+.+.++++.++.+..+. +-.+|...+..|+..+.+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3455555554444333444444444444446666666666555533 2245566666666666666666655
No 326
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.24 E-value=1.5e+02 Score=33.61 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHL 667 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 667 (806)
+.+.-..+...|+.+++..+-.-|.. |..++..+...|.+++|.+++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566677887777776666654 566777777888888888776553
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.14 E-value=83 Score=30.46 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=56.2
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFD 783 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 783 (806)
+++-....|..+|.+.+|.++.++.... -+.+...|-.|+..++. |+--.|.+-++++.. .|+..|..++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3455677888999999999999999987 46778888899999999 997777777777653 37777766654
No 328
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.07 E-value=1.6e+02 Score=33.11 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047492 483 NTYIQLIHGFNK---SNRADIAARLLVEMEE 510 (806)
Q Consensus 483 ~~~~~li~~~~~---~~~~~~a~~~~~~m~~ 510 (806)
.-+..||..|.+ ..+..+|+++|--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345566666655 3456666666666554
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.20 E-value=14 Score=33.79 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh---hccCcchhhHHHHHHh
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML---INEQSKISLLGQLIGV 719 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~ 719 (806)
|.+..+..+.+.+.+.+|+...+.-.+.++ .+...-..++..++..|++++|..-++-+. ....+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556667778888888888877766643 344455567777888888888876665554 3333444555555554
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.13 E-value=6.9 Score=24.63 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
+++.+...|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 477888888888888888888887765
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.00 E-value=1.3e+02 Score=31.75 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 047492 165 DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA 244 (806)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (806)
|..+.-+++..+..+..+.-++.+..+|...| .+...|..++++|... ..++-..+++.+.+... .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 33444455555555555555555555555443 2344555555555555 34455555555555444 222333333333
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCc-----chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh
Q 047492 245 LCKNSRFEQAGKLLEDFKDRDDVVK-----LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK 319 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 319 (806)
|-+ ++.+.+...|.....+ -++. -...|..+... -..+.+..+.+...+....|...-.+.+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333 5555555555544332 1110 00123332221 1234555555555555544444444555555556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLC 350 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 350 (806)
..++.+|++++..+.+..- .|...-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHDE-KDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhcc-hhhhHHHHHHH
Confidence 6677777777766655432 23333333433
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.35 E-value=1.7e+02 Score=32.77 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=92.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFP---GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 460 (806)
|+-+.+.+.+++|++..+..... .| ........+..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45666778888888877654432 33 344667778888888888888777766653 2345555555556655
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHH
Q 047492 461 NKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQL 540 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 540 (806)
++......+ +.......++..|..++..|.. .+ ...|.+.+.. ..++...-..++.+...
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~~~----------- 496 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISATEP----------- 496 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhcch-----------
Confidence 554433322 2222333366778877777776 22 2223333221 33333322222222110
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHH
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQ 579 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 579 (806)
.......+...-..|+..|...+++..|..++-..+
T Consensus 497 ---q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 497 ---QIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ---HHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 011122233334448888888899999988887766
No 333
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.14 E-value=1.1e+02 Score=31.36 Aligned_cols=159 Identities=8% Similarity=-0.032 Sum_probs=92.7
Q ss_pred CCCChhhHHHHHHhhhcCCChHHHHHHHHHHH---HCCCccCcchhH-HHHHHHHhhh--CCCCchhHH---HHHHHHHh
Q 047492 548 QETNFQIYNFFIDGAGHVKRPDLARAVYELMQ---RSGLVPQLGSNI-LMLQSYLKRK--NGIPRKLYN---TLIVGLCK 618 (806)
Q Consensus 548 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~-~~~~~~~~~~--~~~~~~~~~---~li~~~~~ 618 (806)
.+-.+.++-.+...+...|+.+.|.+++++.. +....|....+. ....+-.+.. ..-+...|. ..|..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 45566677777788888999888888777654 111111110000 0000000000 111223333 34567788
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCChhHHHHHHHHHHhCCC-----CCCchhHHHHHHHhhccccH
Q 047492 619 AMKANLAWGFMREMRHNGMYPSMECYEELIKLLC-STKNYDMVVGVMNHLEGHGR-----QVTSFIGNTLLLHALKTRDL 692 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 692 (806)
.|.+..|+++.+-+......-|+.....+|+.|+ +.++++--+++.+....... ......|+..+..+. .++.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~ 194 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE 194 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence 9999999999999998655556777777788776 68889888888887665211 122345555443333 3333
Q ss_pred ---------------HHHHHHHHhhhhccC
Q 047492 693 ---------------YEAWIRLRGMLINEQ 707 (806)
Q Consensus 693 ---------------~~a~~~~~~~~~~~~ 707 (806)
+.|...+.++....|
T Consensus 195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 195 ESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred cccccccccccccchhHHHHHHHHHHHHhH
Confidence 777777777764443
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.10 E-value=7.1 Score=38.01 Aligned_cols=88 Identities=10% Similarity=-0.079 Sum_probs=53.0
Q ss_pred HHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHH
Q 047492 139 MGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKID 217 (806)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 217 (806)
.-|.++|++++|+.+|..-... .| +++++..-..+|.+...+..|+.-.......+-.-..+|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4567888888888888876654 55 77788777888888877777766666555432111123333333333344555
Q ss_pred HHHHHHHHhHh
Q 047492 218 EAVEYFQQLVS 228 (806)
Q Consensus 218 ~a~~~~~~~~~ 228 (806)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55554544443
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.07 E-value=26 Score=32.14 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHh
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQL 226 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 226 (806)
..++.+.+.+..++++...++-.+..+.+......+++.+|-.|++++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555544443
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.72 E-value=94 Score=29.55 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH
Q 047492 381 NYLINSLCGDGSTHEAYEVLKNSIDHGLF-----------PGKKTLSILADALCRDGKFEQMKDLVIFALERN-IKLRDV 448 (806)
Q Consensus 381 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ 448 (806)
..|-..|...+.+.+..++++++...--. --...|..-|..|....+-.+...+++...... --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34555666667777777777776532100 012456677777777777777777777654421 233333
Q ss_pred HHHHHHHH-----HHhcCChhHHH-HHHHHHh
Q 047492 449 TYDKFISA-----LCKANKVEVGY-LIHSELS 474 (806)
Q Consensus 449 ~~~~ll~~-----~~~~~~~~~a~-~~~~~~~ 474 (806)
+.. +|+- ..+.|++++|. .+|+...
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 332 2332 34567777765 3444443
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.90 E-value=72 Score=27.47 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=32.3
Q ss_pred hcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047492 459 KANKVEVGYLIHSELSRMNKVA-SENTYIQLIHGFNKSNRADIAARLLVEMEENG 512 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 512 (806)
..++.+++..+++.+.-..+.. ...++. ...+...|+|++|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 4677777777777765443331 222332 334567788888888888887654
No 338
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.35 E-value=9.4 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=18.3
Q ss_pred CChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 777 PDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
-|....-.++.+|...|+.++|.++++++
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35555556677777777777777776654
No 339
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.17 E-value=1e+02 Score=28.89 Aligned_cols=67 Identities=9% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHhhhcc-ccchhhHHHHHHHHHc--CCCCChhhHHHHHHH--Hhh--hcHHHHHHHHHHHHHcCCCCChhhH
Q 047492 716 LIGVFSGC-IKVSQDIEGLQKMIEQ--CFPLDTYTYNILLRR--LSV--SEIDHACELFNRMRRKGYEPDQWTF 782 (806)
Q Consensus 716 l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~--~~~--g~~~~A~~~~~~m~~~g~~p~~~~~ 782 (806)
+...|-.. .+++.|+..+++.-+. |-.-+...--+++.. |.. +++.+|+.+|++.-...+..+..-|
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 34444433 5667777777777663 111122222233332 333 8888888888888877555444433
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.59 E-value=75 Score=34.11 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
.-.|+++.+..++..+.+ ...+.++..+.++|..++|+++- +|+. .-.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHH
Confidence 345667777666655543 23345566666777777776542 2221 1122344667777776
Q ss_pred HHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 047492 187 VVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 266 (806)
++..+. .+..-|..|..+....|++..|.+.|..... |..|+-.+...|+-+....+-....+. |
T Consensus 658 ~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g 722 (794)
T KOG0276|consen 658 DLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-G 722 (794)
T ss_pred HHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-c
Confidence 665444 3555677777777888888888877776543 334555556666666555544444443 2
Q ss_pred CCcchhhHHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
. .|...-+|...|+++++++++.+-
T Consensus 723 ~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 2 223334556677777777777665
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.26 E-value=66 Score=32.51 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=57.1
Q ss_pred HHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--h--cHHHHHHHHHHHH
Q 047492 696 WIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--S--EIDHACELFNRMR 771 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g--~~~~A~~~~~~m~ 771 (806)
+.+++++.+..|.+...+-.++..+.+..+.++..+.|+++... .+.+...|-..|+-... + .+++...+|.+..
T Consensus 51 lsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 51 LSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 34444444444555555555555555555666666666666665 23355556555554433 1 2344444443333
Q ss_pred Hc------CC------CCC--h---hhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 772 RK------GY------EPD--Q---WTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 772 ~~------g~------~p~--~---~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+. |. .++ . ..+..+..-+.++|..+.|..+++-+
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 21 11 011 1 12333444456899999999998865
No 342
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.74 E-value=2.4e+02 Score=32.70 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhH-HHHHHH---HHHhcCChhhHHHHHHHHhhc
Q 047492 99 FHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRF-NDTLVM---GYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~li~---~~~~~~~~~~A~~~~~~m~~~ 160 (806)
+...+..+...++++++..+.+.....+......+ +..... -+-..+++++|+..|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 78888888888889999888887665321111111 111111 244578999999999998653
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.54 E-value=58 Score=25.67 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 316 RLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
.+.+.|++++|..+.+.+ ..||...|..|.. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445556666666555544 2455555554432 24455555555555555444
No 344
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.46 E-value=35 Score=26.05 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 047492 187 VVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA 254 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (806)
+++..+.+.|+-+..-...+-.+-...|+.+.|.+++..+. +|. ..|...++++...|.-+-|
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 34444444443333323333222234455666666666665 443 3455555555555544433
No 345
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=48 Score=31.73 Aligned_cols=133 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccc
Q 047492 647 LIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKV 726 (806)
Q Consensus 647 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 726 (806)
+.+-..+.+++++|+..+.++...|...+..+.| ....+...+...|...|+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n---------------------------EqE~tvlel~~lyv~~g~~ 61 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN---------------------------EQEATVLELFKLYVSKGDY 61 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh---------------------------HHHHHHHHHHHHHHhcCCc
Q ss_pred hhhHHHHHHHHHcC----CCCChhhHHHHHHHHhh--hcHHHHHHHHHHHHHcCCCCChhhHH-----HHHhhhhccCCH
Q 047492 727 SQDIEGLQKMIEQC----FPLDTYTYNILLRRLSV--SEIDHACELFNRMRRKGYEPDQWTFD-----ILKCGLYNCLRT 795 (806)
Q Consensus 727 ~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~-----~l~~~~~~~g~~ 795 (806)
..-.+......+.- -+......-+||..+.. ..++..+++.+...+-..+-...-.. .++.++.+.|.+
T Consensus 62 ~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Y 141 (421)
T COG5159 62 CSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKY 141 (421)
T ss_pred chHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q ss_pred HHHHHHHHhhC
Q 047492 796 DEAERRLEEMF 806 (806)
Q Consensus 796 ~eA~~~l~~m~ 806 (806)
.+|..++.-++
T Consensus 142 sdalalIn~ll 152 (421)
T COG5159 142 SDALALINPLL 152 (421)
T ss_pred HHHHHHHHHHH
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.70 E-value=20 Score=35.11 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=23.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHH
Q 047492 648 IKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIR 698 (806)
Q Consensus 648 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 698 (806)
.+-|.++|.+++|++++......... ++.++..-..+|++...+..|..-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHh
Confidence 44556666666666666555443321 222222223344444444444333
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.07 E-value=43 Score=30.25 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=47.5
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCc----hhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc
Q 047492 649 KLLCSTKNYDMVVGVMNHLEGHGRQVTS----FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI 724 (806)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 724 (806)
+-+...|++++|..-|...+..-..... +.|..-..+.++.+..+.|+.-...+....|.....+..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455677777777777666655322221 222222233445555555555555555444444444444445555556
Q ss_pred cchhhHHHHHHHHHc
Q 047492 725 KVSQDIEGLQKMIEQ 739 (806)
Q Consensus 725 ~~~~A~~~~~~~~~~ 739 (806)
.+++|++-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666554
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.88 E-value=25 Score=31.25 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhhccCcchhhHHHHHHhhhccc----c-------chhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHH
Q 047492 693 YEAWIRLRGMLINEQSKISLLGQLIGVFSGCI----K-------VSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEID 761 (806)
Q Consensus 693 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~ 761 (806)
++|+..+++++.-.|....++..+..+|...+ + +++|.+.|+++.+. .|+...|+.-+..+.
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~----- 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA----- 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-----
Confidence 34445555555555666666666666665432 2 44556666666664 799999987666553
Q ss_pred HHHHHHHHHHHcCC
Q 047492 762 HACELFNRMRRKGY 775 (806)
Q Consensus 762 ~A~~~~~~m~~~g~ 775 (806)
+|-++..++++.+.
T Consensus 125 kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 KAPELHMEIHKQGL 138 (186)
T ss_dssp THHHHHHHHHHSSS
T ss_pred hhHHHHHHHHHHHh
Confidence 45566666665543
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.80 E-value=9.9 Score=22.27 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=13.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhc
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
+..+|.+.|++++|...|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455556666666666665544
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.74 E-value=77 Score=34.05 Aligned_cols=130 Identities=19% Similarity=0.217 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHH
Q 047492 238 IGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRL 317 (806)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 317 (806)
-+.+...+.+.|..++|+++-. .|+.. .....+.|+++.|.++..+.. +..-|..|-++.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~--------D~d~r-----Felal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELST--------DPDQR-----FELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAA 676 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCC--------Chhhh-----hhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHH
Confidence 3445555566666666655421 11111 122345566666666554432 344566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAY 397 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 397 (806)
.+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|. .| -+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-AF----~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-AF----LAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-HH----HHHHHcCCHHHHH
Confidence 666666666666654332 34455555556665554444444444442 222 22 2334456666666
Q ss_pred HHHHH
Q 047492 398 EVLKN 402 (806)
Q Consensus 398 ~~~~~ 402 (806)
+++.+
T Consensus 742 ~lLi~ 746 (794)
T KOG0276|consen 742 ELLIS 746 (794)
T ss_pred HHHHh
Confidence 66543
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.32 E-value=59 Score=27.94 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhHhcc-----CCcchhHHHHHHHHHHhcCC-hhhHHHHHHHHhhcCCCCChhhHH
Q 047492 97 ATFHAIFKLLHCAKLTPLMVDFLENYKKDR-----YYHQVRFNDTLVMGYALAGK-PDIALHLFGKMRFQGMDLDDYAYH 170 (806)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~ 170 (806)
.-.+.++.-+...+.+..+..+++.+..-. ...+...|+.++.+.++... --.+..+|+-|.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 445788888888889999999888885431 13456678888888877666 445788899998888888999999
Q ss_pred HHHHHHHhcCCcc
Q 047492 171 VLLNALVEQGCFD 183 (806)
Q Consensus 171 ~ll~~~~~~~~~~ 183 (806)
.++.++.+....+
T Consensus 120 ~li~~~l~g~~~~ 132 (145)
T PF13762_consen 120 CLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHcCCCCc
Confidence 9998887664333
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.16 E-value=90 Score=26.85 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=45.4
Q ss_pred HHhCCCCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHH
Q 047492 333 MKEGQISPDG--VTMNTVLCFFCKAGMVDVAIELYKSRSEFG-----LSPNGIVYNYLINSLCGDGS-THEAYEVLKNSI 404 (806)
Q Consensus 333 m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 404 (806)
|.+.+..++. ...|+++......+++.....+++.+.-.. -..+...|++++.+..+..- ---+..+|.-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3434444433 234666666666666666666666552210 01233345555555544433 223445555555
Q ss_pred hCCCCCCHHHHHHHHHHHHh
Q 047492 405 DHGLFPGKKTLSILADALCR 424 (806)
Q Consensus 405 ~~~~~p~~~~~~~ll~~~~~ 424 (806)
+.+.+++...|..++.++.+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHc
Confidence 55555555555555555544
No 353
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.05 E-value=1.4e+02 Score=29.10 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCChhHHH
Q 047492 448 VTYDKFISALCKANKVEVGY 467 (806)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~a~ 467 (806)
.+|..|+.++|..|+.+...
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35777777777777766543
No 354
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.71 E-value=73 Score=25.81 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
|..|+.-|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88999999999999999999998877
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.49 E-value=2e+02 Score=30.30 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=9.8
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 047492 278 LRNLVRAGRLDLALEFLK 295 (806)
Q Consensus 278 i~~~~~~g~~~~a~~~~~ 295 (806)
+...+..|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 444555666665555554
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.32 E-value=19 Score=26.84 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=19.8
Q ss_pred ccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHH
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACE 765 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~ 765 (806)
...+.++|+..|+.+.+.-..+. -.++..|+.+|+. |++.+.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555321111 1233344445555 55555444
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.13 E-value=73 Score=25.13 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=20.7
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
+...|++++|..+.+.+ ..||...|..|... +.|..++...-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34445555554444333 23444444333222 3344444444444444443
No 358
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.10 E-value=2.6e+02 Score=31.44 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCc---chhhHHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 243 DALCKNSRFEQAGKLLEDFKDRDDVVK---LEKAYDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
+.+.+.+.+++|+...+.... ..| -...+...|..+...|++++|-...-.|
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m 418 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM 418 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHH
Confidence 344455555555555544332 222 1233444455555555555554444444
No 359
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.29 E-value=23 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 484 TYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 484 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777778888888888888887765
No 360
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.98 E-value=19 Score=21.25 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
|..+...|.+.|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666777777777777777777665
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.21 E-value=3e+02 Score=31.55 Aligned_cols=229 Identities=13% Similarity=-0.024 Sum_probs=118.7
Q ss_pred HHhhccCCHHHHHHHHHHhHhCCCCCCH-------HhHHHHHH-HHHhcCCHHHHHHHHHHhhhC---CCCCcchhhHHH
Q 047492 208 KCLCKQKKIDEAVEYFQQLVSGRECVSG-------FMIGIVVD-ALCKNSRFEQAGKLLEDFKDR---DDVVKLEKAYDV 276 (806)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 276 (806)
.......++.+|..+..+....-..|+. ..+++|-. .....|+++.|+++.+..... ....+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3345678899999888877654333221 13343332 233468889988887775542 123344556677
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHH-----HHHHhcCC--HHHHHHHHHHHHhCC--CC----CChh
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV-----SRLLKENR--LMEVFDLFMDMKEGQ--IS----PDGV 343 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~--~~~a~~~~~~m~~~g--~~----~~~~ 343 (806)
+..+..-.|++++|..+.....+ ..-..+...|.... ..+...|. ..+....|....... -+ +-..
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77778888999999888776654 11123444333322 23445563 223333333332210 01 1223
Q ss_pred hHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCC----CCHHHHH
Q 047492 344 TMNTVLCFFCKA-GMVDVAIELYKSRSEFGLSPNGIVY--NYLINSLCGDGSTHEAYEVLKNSIDHGLF----PGKKTLS 416 (806)
Q Consensus 344 ~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~ 416 (806)
++..++.++.+. +...++..-+.--......|-...+ ..|+......|+.++|...++++...... ++...-.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 444555555541 1122222222222222222222222 36777888899999999998887743222 2222222
Q ss_pred HHHH--HHHhcCChhHHHHHHHH
Q 047492 417 ILAD--ALCRDGKFEQMKDLVIF 437 (806)
Q Consensus 417 ~ll~--~~~~~g~~~~a~~~~~~ 437 (806)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 23456777776666554
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.69 E-value=60 Score=29.41 Aligned_cols=102 Identities=11% Similarity=-0.029 Sum_probs=65.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 613 IVGLCKAMKANLAWGFMREMRHNGMYPS-----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
..-+.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..+.++.+......+. .-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~-RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE-RRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH-HHHHHHH
Confidence 44577888999999888888874 2221 223444445667788888888888777776643221111 1123566
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQL 716 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 716 (806)
+..++++|+.-+..+.+..|.....-...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 77788888888888877777655444333
No 363
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.50 E-value=70 Score=26.85 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=50.5
Q ss_pred hhhccccchhhHHHHHHHHHcCCCCChhhH--HHHHHHHhh--hcHHHHHHHHHHHHHcCCCC-ChhhHHHHHhhhhccC
Q 047492 719 VFSGCIKVSQDIEGLQKMIEQCFPLDTYTY--NILLRRLSV--SEIDHACELFNRMRRKGYEP-DQWTFDILKCGLYNCL 793 (806)
Q Consensus 719 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~--g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 793 (806)
.|-..+....-..++++..+. +..+..-- -..+..+.+ ...+++.++|+.|..+|+-- -..-|......+...|
T Consensus 35 ~~p~~~~~~~L~~lLer~~~~-f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 35 NYPSGGKQSGLLELLERCIRK-FKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp HCTTCCCCHHHHHHHHHHHHH-HTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred HCCCCCchhHHHHHHHHHHHH-HhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 333334444445566666554 22221111 122333333 33348889999999988654 4455667788888999
Q ss_pred CHHHHHHHHHh
Q 047492 794 RTDEAERRLEE 804 (806)
Q Consensus 794 ~~~eA~~~l~~ 804 (806)
++++|.++++.
T Consensus 114 ~~~~A~~I~~~ 124 (126)
T PF08311_consen 114 NFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99999999864
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.39 E-value=1e+02 Score=29.72 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=43.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCC-CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----
Q 047492 173 LNALVEQGCFDAVAVVSKQISMRGF-ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK---- 247 (806)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 247 (806)
|++++..+++.++..+.-+--+.-- -++.....-|-.|.+.|.+..+.++-....+..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777666555433322211 12334444455566666666666666665544322233335555544433
Q ss_pred -cCCHHHHHHHH
Q 047492 248 -NSRFEQAGKLL 258 (806)
Q Consensus 248 -~g~~~~A~~~~ 258 (806)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555554
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.84 E-value=20 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=17.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNG 636 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g 636 (806)
.+..+|...|+.+.|..++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45667777777777777777776543
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.80 E-value=1.4e+02 Score=27.20 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=46.3
Q ss_pred HHhcCCcchHHHHHHHHHhcCCC---CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFE---NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
+...+++++|+..++........ ...+-..|.+.....|.+++|+..++.....+. .......-.+.+...|+-+
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchH
Confidence 44556666666666555433111 111223344555666777777777766655443 1122333445666667777
Q ss_pred HHHHHHHHhhhC
Q 047492 253 QAGKLLEDFKDR 264 (806)
Q Consensus 253 ~A~~~~~~~~~~ 264 (806)
+|..-|+.....
T Consensus 177 ~Ar~ay~kAl~~ 188 (207)
T COG2976 177 EARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHc
Confidence 777776666554
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.79 E-value=1.1e+02 Score=29.43 Aligned_cols=53 Identities=13% Similarity=-0.023 Sum_probs=21.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 047492 453 FISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK-----SNRADIAARLL 505 (806)
Q Consensus 453 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~ 505 (806)
-|-.|.|.+++..+.++-+.-....-.-+...|..++..|.. .|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333444555554444444333321111122234444433333 45555555544
No 368
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.78 E-value=2e+02 Score=29.01 Aligned_cols=87 Identities=11% Similarity=-0.057 Sum_probs=37.3
Q ss_pred HHHHHHHHhcccCCCCchhhhhhhhhh-ccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHH
Q 047492 60 ESFALQVLNYGKKTKDVLSCLKFFDWA-GRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLV 138 (806)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li 138 (806)
++.+..+|.+|........ ..++-.+ ...+...+.+...-.++..+....+-+...-+-..+ ..+.+.+-
T Consensus 39 ~~~~~~~L~~ld~~~hSlg-ml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~ 109 (422)
T KOG2582|consen 39 SSDLDAVLLHLDPQVHSLG-MLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLT 109 (422)
T ss_pred cchHHHHHHhcCccccchh-hhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHH
Confidence 4455566666554433332 2222221 122222345555555555555554433332222222 12334455
Q ss_pred HHHHhcCChhhHHHHHH
Q 047492 139 MGYALAGKPDIALHLFG 155 (806)
Q Consensus 139 ~~~~~~~~~~~A~~~~~ 155 (806)
.++.+.+.+..-+.+..
T Consensus 110 ~~~~~~~~p~~gi~ii~ 126 (422)
T KOG2582|consen 110 EAVVKKNKPLRGIRIIM 126 (422)
T ss_pred HHHHhcCCccccchHHH
Confidence 55555555555444333
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.39 E-value=98 Score=27.71 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhcc----------ccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh-h---
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGC----------IKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV-S--- 758 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~-g--- 758 (806)
.|.+..+......|.|...++....++... .-+++|+.-|++++.. .|+ ..++.++..+|.. +
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhc
Confidence 344444444444555555444433333211 2345567777777774 455 4677777777754 3
Q ss_pred -c-------HHHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 047492 759 -E-------IDHACELFNRMRRKGYEPDQWTFDILKCGL 789 (806)
Q Consensus 759 -~-------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 789 (806)
+ +++|...|++..+ ..|+...|..-+...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3 3445555555554 588888888665554
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.07 E-value=22 Score=23.10 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047492 488 LIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 488 li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 371
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.43 E-value=2.1e+02 Score=28.00 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 047492 483 NTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 483 ~~~~~li~~~~~~~~~~~a~ 502 (806)
.+|..|+.+++..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 36667777777777665443
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.96 E-value=2.8e+02 Score=29.23 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCh
Q 047492 353 CKAGMVDVAIELYKSRSEFGLSPNGIV--YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKK--TLSILADALCRDGKF 428 (806)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~ 428 (806)
+..|+.+-+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 445665544333 34565555432 223344444555544 344444555544422 112233444455665
Q ss_pred hHHHHHH
Q 047492 429 EQMKDLV 435 (806)
Q Consensus 429 ~~a~~~~ 435 (806)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544444
No 373
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.95 E-value=1.6e+02 Score=26.55 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK 688 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 688 (806)
|.....+-++.-+.+++-+.+- ..+=-+++-.|-+.-++.++.++++.+.+..+..+.. ..+.-
T Consensus 110 FceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L------KGL~g 173 (233)
T PF14669_consen 110 FCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL------KGLTG 173 (233)
T ss_pred HHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc------cCccC
Confidence 7777777666655555444331 1112345667788888999999999887765433210 00000
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQ 734 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 734 (806)
+ +...+.-.+.|.-...|.+.|..+.|+.+++
T Consensus 174 ------~--------e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 174 ------P--------EKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred ------c--------cccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 0 1223444556666777777777777777776
No 374
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.27 E-value=2.3e+02 Score=28.09 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHH-HcCCChhHHHHHHHHHHhCC
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRS----EFGLSPNGIVYNYLINSL-CGDGSTHEAYEVLKNSIDHG 407 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~ 407 (806)
.+......||+-|+.+.|++.++... ..|.+.|+..+.+-+..+ ....-+.+-++..+.+.+.|
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34445566777777777777666533 245556655554433322 22222334444444444444
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.51 E-value=1.6e+02 Score=30.53 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=43.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--cCCChhHHHHHHHHHHhC
Q 047492 613 IVGLCKAMKANLAWGFMREMRHNGMYPSME--CYEELIKLLC--STKNYDMVVGVMNHLEGH 670 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 670 (806)
+..+...+++..|.++|+.+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999987 555554 5555666654 477899999999988765
No 376
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.59 E-value=1.8e+02 Score=26.44 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=50.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047492 350 CFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY-----LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR 424 (806)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 424 (806)
..+...|++++|+..++..... |....+.. |.+.....|.+++|+..++...+.+.. ......--+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4456677777777777765542 22222322 334556677777777777765544322 1222333455667
Q ss_pred cCChhHHHHHHHHHHHCC
Q 047492 425 DGKFEQMKDLVIFALERN 442 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~ 442 (806)
.|+-++|..-|+..++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777766654
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.38 E-value=61 Score=34.56 Aligned_cols=102 Identities=10% Similarity=-0.099 Sum_probs=73.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHH
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAW 696 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 696 (806)
...|+...|...+.........-..+....+.+.+.+.|...+|-.++.+.+... ...+.++..+..+++...+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3478888888877766542211122334456666777788888888888877766 455667777888888889999999
Q ss_pred HHHHhhhhccCcchhhHHHHHHh
Q 047492 697 IRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+.++++....+....+-+.|...
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 99999988888877777766443
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.86 E-value=2.1e+02 Score=26.92 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=15.4
Q ss_pred HHcCCChhHHHHHHHHHHhCCCC
Q 047492 387 LCGDGSTHEAYEVLKNSIDHGLF 409 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~~~~~ 409 (806)
-...+++.+|+++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777888888777665444
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.60 E-value=1.7e+02 Score=27.60 Aligned_cols=120 Identities=14% Similarity=-0.020 Sum_probs=73.9
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCchhHHH-HHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchh
Q 047492 650 LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNT-LLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
-|.....++.|+..+.+.+..+ |++.+|.+ -+..+++..+++....--+.+..-.+.......-+.........+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4556677888888777666654 44433322 23355667777777777777766666666556666666677778888
Q ss_pred hHHHHHHHHHc----CCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 729 DIEGLQKMIEQ----CFPLDTYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 729 A~~~~~~~~~~----~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
|+..++++... .+++....++.|..+--+ =...+...++++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 88888887543 244555566666555444 34444445555443
No 380
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.34 E-value=2.9e+02 Score=28.40 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------CCCCchhH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNG--MYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHG-------RQVTSFIG 679 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~ 679 (806)
+.-+.+-|...|+.+.|++.|.+....- .+-....|..+|..-.-.|+|........+....- ........
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 6778888999999999999999866531 11123345556666666888887777776665441 12222233
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhc--------cCcchhhHHHHHHhhhccccchh-----hHHHHHHHHHcCCCCChh
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLIN--------EQSKISLLGQLIGVFSGCIKVSQ-----DIEGLQKMIEQCFPLDTY 746 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~ 746 (806)
.....+.+..+++..|.+.+-.+..+ .|.|..+|..| .+.+--++-+- .-..|+...+ ..+.
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~fle----l~Pq 307 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLE----LEPQ 307 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHh----cChH
Confidence 33333444555777777777666521 22334444332 22222221110 0112222222 1223
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHHc-----CCCCChhhHHHHHh
Q 047492 747 TYNILLRRLSVSEIDHACELFNRMRRK-----GYEPDQWTFDILKC 787 (806)
Q Consensus 747 ~~~~li~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~l~~ 787 (806)
.+.. |..+..+++...++++.++... -+.|.+.+...+|+
T Consensus 308 lr~i-l~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREI-LFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHH-HHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3333 3333346788888888877644 34555555554443
No 381
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.08 E-value=75 Score=27.47 Aligned_cols=46 Identities=22% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK 655 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 655 (806)
..++..+.+.++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4566666666666667777777777666655555444445555554
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.95 E-value=82 Score=26.06 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=33.4
Q ss_pred HHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 115 MVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
+.+-+..+....+.|++.+..+.++++.+.+++..|+++|+-.+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555666666677777777777788888888888888888777643
No 383
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.85 E-value=19 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=20.9
Q ss_pred cCCChHHHHHHHHHHHHCCCccCc
Q 047492 564 HVKRPDLARAVYELMQRSGLVPQL 587 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~~~~~p~~ 587 (806)
..|.-.+|-.+|.+|.+.|-.||.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc
Confidence 346677899999999999999987
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.83 E-value=60 Score=21.57 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=22.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSMECYEELIK 649 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 649 (806)
.+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.72 E-value=30 Score=33.69 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELI 648 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 648 (806)
|+..|....+.||+++|++++++..+.|+.--..+|-.-+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 7799999999999999999999999999877666654443
No 386
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.13 E-value=4e+02 Score=29.62 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHh
Q 047492 97 ATFHAIFKLLHCAKLTPLMVDFLENY 122 (806)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~l~~~ 122 (806)
..|-..+..+.-.|.++.|.+++...
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45555677777777777777777443
No 387
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.64 E-value=33 Score=19.08 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
|..+...+...|++++|...|+..++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 56666777777777777777776654
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.30 E-value=69 Score=21.28 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=15.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
+.|-..++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344445555555555555555555444443
No 389
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.16 E-value=4.3e+02 Score=29.67 Aligned_cols=205 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch----------hhHHHHHHHHHH
Q 047492 217 DEAVEYFQQLVSGRECV---SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE----------KAYDVWLRNLVR 283 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~~li~~~~~ 283 (806)
++-..++++|..+--.| ...+...++-.|....+++...++.+.++.. ||. ..|.-.++---+
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCC
Q ss_pred cCCHHHHHHHHHhhhhcCC-CCCCcccHHHHH-------HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 047492 284 AGRLDLALEFLKSKNSLEG-YVPEVFRFNFLV-------SRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKA 355 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li-------~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 355 (806)
-|+-++|+...-.+.+..| +.||.....--| +.|...+..+.|.+.|++.-+ +.|....--.+...+...
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Q ss_pred CC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047492 356 GM-VDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDL 434 (806)
Q Consensus 356 g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 434 (806)
|. ++..+++-.--.. |-..+.+.|..++..++|+ ....+.+-.-.+++.+|.+.
T Consensus 334 G~~Fens~Elq~Igmk------------Ln~LlgrKG~leklq~YWd-------------V~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMK------------LNSLLGRKGALEKLQEYWD-------------VATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhhccchHHHHHHHHH------------HHHHhhccchHHHHHHHHh-------------HHHhhhhhhhccCHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHH
Q 047492 435 VIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l 453 (806)
-+.|.+.. +|.-..-+.+
T Consensus 389 ae~mfKLk-~P~WYLkS~m 406 (1226)
T KOG4279|consen 389 AEMMFKLK-PPVWYLKSTM 406 (1226)
T ss_pred HHHHhccC-CceehHHHHH
No 390
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=48.71 E-value=1.1e+02 Score=32.07 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHCCCccCcch
Q 047492 569 DLARAVYELMQRSGLVPQLGS 589 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~ 589 (806)
..|.++|.++.+.|+.||..|
T Consensus 233 GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 233 GNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred ccHHHHHHHHHHcCCCCCCcC
Confidence 345566777777777776665
No 391
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.55 E-value=2.8e+02 Score=27.41 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 319 KENRLMEVFDLFMDMKEGQISPDGV---TMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
+.|+..+|.+.|+++.+.- |=.. ....||.++....-+.+...++.+..
T Consensus 287 klGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555555555544421 1111 22335555555444444444444433
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.35 E-value=1.3e+02 Score=24.91 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
+..+-++.+..-.+.|++.....-+++|.+.+++..|.++|+.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555666666777777777777777777777777777777654
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.33 E-value=58 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 741 FPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 741 ~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
..|+...|..++.++.. |+.++|....+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36777777777777777 8888887777777754
No 394
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.14 E-value=3.7e+02 Score=28.41 Aligned_cols=76 Identities=11% Similarity=-0.078 Sum_probs=47.6
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHH-------cCCCCC-----------hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 713 LGQLIGVFSGCIKVSQDIEGLQKMIE-------QCFPLD-----------TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 713 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~-----------~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
||.|.-.+...|.+.-+..+|.++.+ .|++|. ..+||+=+. |.+ |+.-.|.+.|.+....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~-~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL-YLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH-HHhcCCcHHHHHHHHHHHHH
Confidence 35555555555666666666665553 243332 345666443 445 8888888888877654
Q ss_pred CCCCChhhHHHHHhhhh
Q 047492 774 GYEPDQWTFDILKCGLY 790 (806)
Q Consensus 774 g~~p~~~~~~~l~~~~~ 790 (806)
+.-++..|-.+..+|.
T Consensus 365 -fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 365 -FHRNPRLWLRLAECCI 380 (696)
T ss_pred -HhcCcHHHHHHHHHHH
Confidence 5667778888888775
No 395
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.11 E-value=3e+02 Score=27.35 Aligned_cols=19 Identities=21% Similarity=-0.043 Sum_probs=9.6
Q ss_pred HHhhccccHHHHHHHHHhh
Q 047492 684 LHALKTRDLYEAWIRLRGM 702 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~ 702 (806)
..|++.||.+.|.+.++.-
T Consensus 112 eYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 112 EYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHhccHHHHHHHHHHH
Confidence 3455555555555554443
No 396
>PRK09687 putative lyase; Provisional
Probab=47.07 E-value=2.9e+02 Score=27.18 Aligned_cols=135 Identities=11% Similarity=-0.009 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG-KFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
+..+-...+.++.+.++ ++++..+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455566655554 3455555555543 34444444455555432 13344444444442 34555556666
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRC 526 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (806)
.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 666666663 3443333333322 1 223455666666664 466666666542 3354444444433
No 397
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.35 E-value=5.1e+02 Score=29.79 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=53.5
Q ss_pred HhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHH---------------hcCChhHHHHHHHHHhhcCCCC-
Q 047492 423 CRDGKFEQMKDLVIFALERN------IKLRDVTYDKFISALC---------------KANKVEVGYLIHSELSRMNKVA- 480 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~---------------~~~~~~~a~~~~~~~~~~~~~~- 480 (806)
...|++.+|.+.|+..+-.- -.-+..-...++..++ ..+..+.+.++.......+..|
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 35578888888887765321 1112222233333331 1223344433333334444554
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 481 -SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 481 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
...+....+..+.+.+++..|-.+-.++.+.+-.|..
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3345566778888888888888888888886655554
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.24 E-value=1.1e+02 Score=23.69 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=23.9
Q ss_pred HhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 700 RGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
+......|.|......+...+...|++++|++.+-++.+.
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334455566666666666666777777777766666664
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.11 E-value=1.4e+02 Score=24.30 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=24.8
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHHHH
Q 047492 554 IYNFFIDGAGHVKRPDLARAVYELMQR 580 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 580 (806)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999886
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.15 E-value=3.4e+02 Score=27.40 Aligned_cols=77 Identities=8% Similarity=-0.059 Sum_probs=46.6
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHH
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK---NSRFEQAGKLLE 259 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 259 (806)
+.-+.++++..+.++.+......+++.+.+..+.+...+-++++..... -+...|...++.... .-.++....+|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4455666666666665666777777777777777777777777776543 345566665554433 223444444444
Q ss_pred H
Q 047492 260 D 260 (806)
Q Consensus 260 ~ 260 (806)
+
T Consensus 127 ~ 127 (321)
T PF08424_consen 127 K 127 (321)
T ss_pred H
Confidence 3
No 401
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.11 E-value=1e+02 Score=28.75 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=21.7
Q ss_pred hcHHHHHHHHHHHHHcCCCCChhhHHHHHh----hhhccCCHHHHHHHHH
Q 047492 758 SEIDHACELFNRMRRKGYEPDQWTFDILKC----GLYNCLRTDEAERRLE 803 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~----~~~~~g~~~eA~~~l~ 803 (806)
|+.++|++...++...-+.-|...+-.|.. -+.+.|+.++|+++.+
T Consensus 78 G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 78 GQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred ccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666666666555553333333322222211 1345566666666554
No 402
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=44.95 E-value=1.5e+02 Score=23.09 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=27.2
Q ss_pred hcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcC
Q 047492 194 MRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNS 249 (806)
Q Consensus 194 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 249 (806)
..++.|......+...+...|++++|.+.+-.+++..... +...-..|+..+.-.|
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 3344444555566666666666666666666666554322 2233344444443333
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.67 E-value=4.2e+02 Score=28.28 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
...-+++..+..+..+.-+..+..+|..-| -+...|..++.+|... .-+.-..+++++.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 334444455555555555555555555433 2344445555555444 33444444444444
No 404
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.39 E-value=4e+02 Score=27.99 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH----hHHHHHHHHHccCCcH---HHHHHHHH---hHhhCCCCChhhHHHHHHhhhc
Q 047492 495 SNRADIAARLLVEMEENGHKPTRA----LHRAVIRCLCNMETPA---KQFLQLLN---MQLSHQETNFQIYNFFIDGAGH 564 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~ 564 (806)
.|+.++|+.++-.++. +.||.. -|..+++.+....+.. -...+.++ ...-....+........-...+
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH 788 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH
Confidence 5788999998887765 788864 3555565554332211 01111111 1111112222221111111234
Q ss_pred CCChHHHHHHHHHHHHCCCc
Q 047492 565 VKRPDLARAVYELMQRSGLV 584 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~~~~~ 584 (806)
..++..|++.|+.+.+.+-.
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~ 808 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGP 808 (831)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 56788999999999876533
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.87 E-value=1.1e+02 Score=32.68 Aligned_cols=85 Identities=9% Similarity=-0.069 Sum_probs=50.1
Q ss_pred cCCcchHHHHHHHHHhcCC-CCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 047492 179 QGCFDAVAVVSKQISMRGF-ENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKL 257 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (806)
.|+...|...+.......+ ........|.....+.|-..+|-.++.+..... .....++..+.+++.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 5666666666655554444 244455556666666666666666666555443 23334555666666667777777777
Q ss_pred HHHhhhC
Q 047492 258 LEDFKDR 264 (806)
Q Consensus 258 ~~~~~~~ 264 (806)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 7665543
No 406
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.52 E-value=3.9e+02 Score=27.56 Aligned_cols=53 Identities=8% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCC-CccchHHHHHHhh-ccCCHHHHHHHHHHh
Q 047492 174 NALVEQGCFDAVAVVSKQISMRGFE-NDVTRTIMLKCLC-KQKKIDEAVEYFQQL 226 (806)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~~ 226 (806)
..+.+.|.+..|.++.+-+...++. |+.....+|+.|+ +.++++--.++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3344555555666665555555554 4444444555444 444454445544443
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.42 E-value=78 Score=21.62 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEEL 647 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (806)
.+.-++.+.|++++|.+..+.+.+ ++|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 466778889999999999988888 67765544444
No 408
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=43.26 E-value=74 Score=23.86 Aligned_cols=46 Identities=7% Similarity=-0.104 Sum_probs=21.1
Q ss_pred hcCChhHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVAS--ENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
..++.++|+..+....++...+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444333221 12344455555555555554444
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.26 E-value=21 Score=29.79 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=15.4
Q ss_pred cccchhhHHHHHHHHHcCCCCChhhHHHHHHH
Q 047492 723 CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRR 754 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 754 (806)
.|.-.+|-.+|++|++.|.+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34555555555555555555542 4444443
No 410
>PRK05414 urocanate hydratase; Provisional
Probab=41.77 E-value=1.6e+02 Score=31.19 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHCCCccCcch
Q 047492 569 DLARAVYELMQRSGLVPQLGS 589 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~ 589 (806)
..|-++|.++.+.|+.||..|
T Consensus 242 GNaadv~~~l~~~~i~pDlvt 262 (556)
T PRK05414 242 GNAADVLPELVRRGIRPDLVT 262 (556)
T ss_pred ccHHHHHHHHHHcCCCCCccC
Confidence 445667777777777777666
No 411
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.79 E-value=2.5e+02 Score=28.98 Aligned_cols=55 Identities=7% Similarity=-0.004 Sum_probs=39.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHH--cCCChhHHHHHHHH
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPSMEC----YEELIKLLC--STKNYDMVVGVMNH 666 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~~~--~~g~~~~A~~~~~~ 666 (806)
.+..+...+++..|.++|+++.+..+.|+... |..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456678999999999999998866555433 444444543 46788999999885
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.68 E-value=1.7e+02 Score=22.56 Aligned_cols=33 Identities=0% Similarity=0.068 Sum_probs=14.5
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR 497 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 497 (806)
.|+.+.|.+++..+. +|+. .|..++.++...|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKEG----WFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCc
Confidence 344444444444444 3322 44444444444443
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.22 E-value=1.1e+02 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=18.4
Q ss_pred HhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 193 SMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 193 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
.+.|..-......++..+...++.-.|.++++.+.+.++..
T Consensus 13 k~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 13 KEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 33333333334444444444444455555555555444433
No 414
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.85 E-value=1.9e+02 Score=29.65 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=52.8
Q ss_pred CCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhc--cCCc-chhHH
Q 047492 58 LTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKD--RYYH-QVRFN 134 (806)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~ 134 (806)
++.+.+...+......+++. +-...+...++-....-.+.-.+++.-.-.|+.+...+.++.+++. |-.| -..+
T Consensus 199 v~ksqi~~ql~~~~s~~dp~--~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT- 275 (525)
T KOG3677|consen 199 VDKSQISIQLTASVSNKDPA--LVALIFGASQPYANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT- 275 (525)
T ss_pred HHHHHHHHHHHHHhcCCChh--hhhhhhccccHHHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-
Confidence 44455555555544444432 2222333334433344445555566666666777777777777765 2222 2222
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHh
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
-.+.-+|.-.+++.+|+++|-...
T Consensus 276 Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777788888777664
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.27 E-value=53 Score=32.04 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047492 745 TYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILK 786 (806)
Q Consensus 745 ~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 786 (806)
..-||..|..-.+ ||+++|+.+++|..+.|+.--..||..-+
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3446788888888 99999999999999999987777766544
No 416
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.06 E-value=1.1e+02 Score=21.93 Aligned_cols=55 Identities=16% Similarity=0.030 Sum_probs=34.4
Q ss_pred CCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHH
Q 047492 742 PLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDE 797 (806)
Q Consensus 742 ~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 797 (806)
.|....++.++..++. .-.++++..+.+....|. .+..+|..-++.+++...+-.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~~R 60 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFLKR 60 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777 777777777777777664 355666666666665544433
No 417
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.02 E-value=4.2e+02 Score=26.64 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 323 LMEVFDLFMDMKEGQI----SPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
.++|.+.|+.....+. ..+......++....+.|+.+....+++.... ..+......++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556777777666422 23445555566666666766655555555554 3466667777777777777777777
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--hHHHHHHH
Q 047492 399 VLKNSIDHG-LFPGKKTLSILADALCRDGKF--EQMKDLVI 436 (806)
Q Consensus 399 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--~~a~~~~~ 436 (806)
+++.....+ +.+. . ...++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 777777654 3332 2 23344444423332 44544443
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.67 E-value=5.2e+02 Score=27.61 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh-ccCCHHHHHHHHHHhHh
Q 047492 150 ALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC-KQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 150 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 228 (806)
...+|...... +..|+..|...+.-|.+.+.+.+...+|.+|....+.++..|-.-..... ..-+++.|..+|..-++
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 34444444332 23377777777777777777777888888888777766666654443333 33347778887777766
Q ss_pred CCC
Q 047492 229 GRE 231 (806)
Q Consensus 229 ~~~ 231 (806)
.++
T Consensus 169 ~np 171 (568)
T KOG2396|consen 169 FNP 171 (568)
T ss_pred cCC
Confidence 554
No 419
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=38.64 E-value=5.7e+02 Score=28.08 Aligned_cols=101 Identities=11% Similarity=-0.031 Sum_probs=41.6
Q ss_pred cCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHH
Q 047492 144 AGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYF 223 (806)
Q Consensus 144 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 223 (806)
.|++++|+...+.....+-..-+.-..+.+.-++.....+.....|+.+.+.+|.-..+..-++..+.. ...+.+++
T Consensus 322 ~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Ll 398 (547)
T PF14929_consen 322 GGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLL 398 (547)
T ss_pred cccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHH
Confidence 356666666666654331111111111111112222244455555555555544333333333332222 33444444
Q ss_pred HHh-HhCCCCCCHHhHHHHHHHHHh
Q 047492 224 QQL-VSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 224 ~~~-~~~~~~~~~~~~~~li~~~~~ 247 (806)
+-+ ...+..|...+|--+...+.+
T Consensus 399 e~i~~~l~~~~s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 399 EMIALHLDLVPSHPIWLEFVSCFLK 423 (547)
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHh
Confidence 433 122333555555555555554
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.59 E-value=78 Score=35.71 Aligned_cols=75 Identities=11% Similarity=-0.023 Sum_probs=46.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccc
Q 047492 647 LIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKV 726 (806)
Q Consensus 647 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 726 (806)
+|..+.+.|.++-|+.+.+.=... ...+++.|+++.|++..... .+..+|..|+..-..+|+.
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcch
Confidence 445556677777776665432111 12345667777776655444 4566777777777777777
Q ss_pred hhhHHHHHHHHH
Q 047492 727 SQDIEGLQKMIE 738 (806)
Q Consensus 727 ~~A~~~~~~~~~ 738 (806)
.-|+..+++.+.
T Consensus 689 ~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 689 QIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHHhhh
Confidence 777777766654
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.18 E-value=75 Score=24.89 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=29.4
Q ss_pred ccccchhhHHHHHHHHHcCC---CCC---hhhHHHH--HHHHhh-hcHHHHHHHHHHHHHc
Q 047492 722 GCIKVSQDIEGLQKMIEQCF---PLD---TYTYNIL--LRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~---~~~---~~~~~~l--i~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+.|++.+|.+.+.+..+... .+. ...+..+ ...... |++++|+..+++..+.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666655555554321 111 2223333 333444 9999999999988754
No 422
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=3.6e+02 Score=25.60 Aligned_cols=118 Identities=18% Similarity=0.037 Sum_probs=74.7
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSM 641 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 641 (806)
|....++..|..-|.+.. -+.|+..+| |+.-+.++.+..+++.+..=-...++ +.||.
T Consensus 20 ~f~~k~y~~ai~~y~raI--~~nP~~~~Y------------------~tnralchlk~~~~~~v~~dcrralq--l~~N~ 77 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI--CINPTVASY------------------YTNRALCHLKLKHWEPVEEDCRRALQ--LDPNL 77 (284)
T ss_pred ccchhhhchHHHHHHHHH--hcCCCcchh------------------hhhHHHHHHHhhhhhhhhhhHHHHHh--cChHH
Confidence 445567788888666655 557877663 67777788888888888776666665 66765
Q ss_pred HHHH-HHHHHHHcCCChhHHHHHHHHHH----hCCCCCCchhHHHHHHHhhccccHHHHHHHHHh
Q 047492 642 ECYE-ELIKLLCSTKNYDMVVGVMNHLE----GHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRG 701 (806)
Q Consensus 642 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 701 (806)
.--. .+..++.....+++|+..+.+.. ...+++..-+.+.|..+-.+.-...+..++.+.
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 4332 34444556778889988887763 334455555666666554444444444443333
No 423
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.42 E-value=3.1e+02 Score=28.76 Aligned_cols=22 Identities=5% Similarity=-0.139 Sum_probs=15.8
Q ss_pred HHHhhhcCCChHHHHHHHHHHH
Q 047492 558 FIDGAGHVKRPDLARAVYELMQ 579 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~m~ 579 (806)
+..-+...|.++.|.+++++=.
T Consensus 124 laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC
T ss_pred cHHHHHHhCCHHHHHHHHHHHh
Confidence 3445677899999999988755
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.67 E-value=1e+02 Score=28.23 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=12.7
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMK 334 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (806)
|+..+|..++..+...|+.++|.++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 425
>PRK10941 hypothetical protein; Provisional
Probab=36.38 E-value=3.2e+02 Score=26.70 Aligned_cols=77 Identities=10% Similarity=-0.025 Sum_probs=51.9
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
.+.+-.+|.+.++++.|.++.+.+....+ .+..-+.--.-.|.+.|.+..|..-++...+...-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 45666778888888888888888887654 344445555556888888888888888876653445554444444443
No 426
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=6.9e+02 Score=28.22 Aligned_cols=559 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMI-GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEF 293 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (806)
.+.+.....+.+.+....|+..+- -.+-..|...|++++|++.--.......+.++...+.+++.-|... -.+.+.+.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~ 116 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASET 116 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHH
Q ss_pred HHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCChhhHHHHHHHHHHcCC-hHHHHH
Q 047492 294 LKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI--------SPDGVTMNTVLCFFCKAGM-VDVAIE 363 (806)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------~~~~~~~~~ll~~~~~~g~-~~~a~~ 363 (806)
++.-.+..++.+. ....+.++..|...+++..|+.+.-+....++ ..+....+.++..+....+ -+--.+
T Consensus 117 ~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 117 YKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047492 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI 443 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (806)
+++.+.+.-.+....-|-.+.++|.-..+.+.+.++++++.+ .-+......+.--+..+-.-+--..+.+.+... -
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~---e~~~llayQIAFDL~esasQefL~~v~~~l~~d-~ 272 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK---EDDLLLAYQIAFDLYESASQEFLDSVLDRLPAD-D 272 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh---cchhhhHHHHHHHHhhccCHHHHHHHHHHcccc-c
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 047492 444 KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAV 523 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 523 (806)
.-+......+++.+.- +...+++....-.+-..|....+..-+.. +..-...|.-+-+-+...|-..|.. +..-
T Consensus 273 ~~de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~F-lR~N 346 (929)
T KOG2062|consen 273 ARDEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTF-LRNN 346 (929)
T ss_pred ccccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHH-HHhc
Q ss_pred HHHHHccCCc----------------HHHHHHHHHhHhhC----CCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCC
Q 047492 524 IRCLCNMETP----------------AKQFLQLLNMQLSH----QETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 524 l~~~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 583 (806)
+..+++..+. ......++.-.... ...-..--..+.-++.+.|......+.+....+..-
T Consensus 347 L~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~ 426 (929)
T KOG2062|consen 347 LDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE 426 (929)
T ss_pred hhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhcc
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM-KANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVG 662 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 662 (806)
.+.... =.+|.-++...| .-.+..+-+++.....-....+.-..-+..+.---.-.+|++
T Consensus 427 ~e~v~h-------------------G~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaie 487 (929)
T KOG2062|consen 427 NEVVRH-------------------GACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIE 487 (929)
T ss_pred chhhhh-------------------hhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHH
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhH--HHHHHhhhccccchhhHHHHHHHHHcC
Q 047492 663 VMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLL--GQLIGVFSGCIKVSQDIEGLQKMIEQC 740 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 740 (806)
-+...-..-..-...-.-.+..++.--|+.++|-.++.++.....|-...- -++..+|+..|+..-...++.-....
T Consensus 488 dm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD- 566 (929)
T KOG2062|consen 488 DMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD- 566 (929)
T ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-
Q ss_pred CCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc-CCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 741 FPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK-GYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 741 ~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
...|+.-+....-++.- .+.+....+.+-+.+. +..----+--.|.-+|.-.|. .+|..+++-|
T Consensus 567 ~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl 632 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPL 632 (929)
T ss_pred cchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhh
No 427
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.75 E-value=5e+02 Score=27.15 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
+|+.+.-.+.=+.+.+..|++....+
T Consensus 367 SgdpeDi~~tD~~~~el~p~n~~l~~ 392 (561)
T COG2987 367 SGDPEDIYKTDAAVKELFPDNKHLHR 392 (561)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 45555555555555555565554443
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.67 E-value=1.1e+02 Score=21.81 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 047492 114 LMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
.+.++++.++.. ..|..-.-.+|.+|...|++++|.+..+++.
T Consensus 8 ~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 8 ELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 2233333455666666677776666666654
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.28 E-value=6.2e+02 Score=27.57 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHhcCCcchHHHHHHHHHhcCCC-CccchHHHHHHhh-ccCCHHHHHHHHHHh
Q 047492 176 LVEQGCFDAVAVVSKQISMRGFE-NDVTRTIMLKCLC-KQKKIDEAVEYFQQL 226 (806)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~~ 226 (806)
+.+.|.+..|.++.+.+....+. |+.....+|+.|+ ++.++.-.+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666666666666655553 5555555555554 444555555555544
No 430
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.00 E-value=4.3e+02 Score=25.66 Aligned_cols=206 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHhHHHHHHHHHccCCc
Q 047492 458 CKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN----GHKPTRALHRAVIRCLCNMETP 533 (806)
Q Consensus 458 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~ 533 (806)
.+.+++++|.+++..-... +.+.|+...|-++-.-+++. +..++......++..+......
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred HHHHHHHHHhHhhCCC------CChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCch
Q 047492 534 AKQFLQLLNMQLSHQE------TNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRK 607 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 607 (806)
......+.+....... -++.....+...|.+.|++.+|+.-| +. +-.|+...
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf--l~--~~~~~~~~------------------ 123 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF--LL--GTDPSAFA------------------ 123 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH--HT--S-HHHHHH------------------
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH--Hh--cCChhHHH------------------
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---------------CC
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH---------------GR 672 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~ 672 (806)
+..++......|...++ .......+--|...|+...|..+++...+. ..
T Consensus 124 -~~~ll~~~~~~~~~~e~---------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~ 187 (260)
T PF04190_consen 124 -YVMLLEEWSTKGYPSEA---------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPP 187 (260)
T ss_dssp -HHHHHHHHHHHTSS--H---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEES
T ss_pred -HHHHHHHHHHhcCCcch---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCC
Q ss_pred CCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHH
Q 047492 673 QVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQL 716 (806)
Q Consensus 673 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 716 (806)
......+-.++-..++.++...-..+.+........++.....|
T Consensus 188 ~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L 231 (260)
T PF04190_consen 188 SYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYL 231 (260)
T ss_dssp S-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHH
T ss_pred CCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHH
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.99 E-value=2.6e+02 Score=25.23 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 568 PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEEL 647 (806)
Q Consensus 568 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (806)
.+.|+.+|+.+.+.--.|+ +....+..+ .-...+-.|.+.|.+++|.+++++..+ .|+......-
T Consensus 85 LESAl~v~~~I~~E~~~~~--~lhe~i~~l----------ik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~k 149 (200)
T cd00280 85 LESALMVLESIEKEFSLPE--TLHEEIRKL----------IKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMK 149 (200)
T ss_pred HHHHHHHHHHHHHhcCCcH--HHHHHHHHH----------HHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHH
Confidence 4678888888776433331 111111111 023456679999999999999999886 4444444444
Q ss_pred HHHHH
Q 047492 648 IKLLC 652 (806)
Q Consensus 648 ~~~~~ 652 (806)
+....
T Consensus 150 L~~II 154 (200)
T cd00280 150 LLMII 154 (200)
T ss_pred HHHHH
Confidence 33333
No 432
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.99 E-value=3.1e+02 Score=27.49 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=31.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCC---CCCCchhHHHH--HHHhhccccHHHHHHHHHhhh
Q 047492 647 LIKLLCSTKNYDMVVGVMNHLEGHG---RQVTSFIGNTL--LLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 647 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 703 (806)
++...-+.++.++|.++++++.+.- ..|+.+.+... ...++..||+.++.+.+.+..
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444556778999999998886542 23333333222 223334455555555544443
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.72 E-value=2e+02 Score=22.50 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=30.9
Q ss_pred hcHHHHHHHHHHHHHc----CCCCC----hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 758 SEIDHACELFNRMRRK----GYEPD----QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~----g~~p~----~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
|++.+|.+.+.+.-+. +...+ ......+.......|+.++|...+++
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8999987766665544 22221 22233455566789999999999876
No 434
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=34.70 E-value=75 Score=19.52 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCCChhhHHHHHhhhhc-cCCHHHHHHHH
Q 047492 766 LFNRMRRKGYEPDQWTFDILKCGLYN-CLRTDEAERRL 802 (806)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~eA~~~l 802 (806)
.++++.+.|+.++ .... ||.+ .|+.+.|.++|
T Consensus 5 ~v~~L~~mGf~~~-~~~~----AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEMGFSRE-QARE----ALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTS-HH-HHHH----HHHHTTTSHHHHHHHH
T ss_pred HHHHHHHcCCCHH-HHHH----HHHHcCCCHHHHHHhC
Confidence 3444555576554 2222 3322 45777777664
No 435
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.44 E-value=1.2e+03 Score=30.69 Aligned_cols=323 Identities=13% Similarity=0.009 Sum_probs=161.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCC-ChhhHHHHHH-HHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 136 TLVMGYALAGKPDIALHLFGKMRFQGMDL-DDYAYHVLLN-ALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 136 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
.+..+--+++.+.+|+..++.-.....+- ....+..++. .|+..+++|....+...-. -......-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHHHHhh
Confidence 34445567788888888888842111110 1223344444 8888899888777766411 122344455566778
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHH-HHHHHHHcCCHHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDV-WLRNLVRAGRLDLALE 292 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~ 292 (806)
|++..|...|+.+.+.+. +....++-++......|.++.+....+..... ..+....|+. =+.+--+.++|+....
T Consensus 1463 g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 999999999999988765 33556666666666677777777766655443 2222222222 2333345666666655
Q ss_pred HHHhhhhcCCCCCCcccHHHH--HHHHHhc--CCHHHHHHHHHHHHhCCCCC---------ChhhHHHHHHHHHHcCChH
Q 047492 293 FLKSKNSLEGYVPEVFRFNFL--VSRLLKE--NRLMEVFDLFMDMKEGQISP---------DGVTMNTVLCFFCKAGMVD 359 (806)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~l--i~~~~~~--~~~~~a~~~~~~m~~~g~~~---------~~~~~~~ll~~~~~~g~~~ 359 (806)
... ..+..+|... ...+.+. .+.-...+..+.+.+.-+.| =...|..+++...-..--.
T Consensus 1540 ~l~--------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1540 YLS--------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhh--------cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 443 1233334333 2222222 22111222333333221111 0123344443332211111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH-HHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHH
Q 047492 360 VAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKN-SIDH----GLF-PGKKTLSILADALCRDGKFEQMKD 433 (806)
Q Consensus 360 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 433 (806)
....+...-.......+..-|..-+..-....+..+-+--+++ +... +.. --..+|-...+...+.|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111000000011111222222211111112222212222 1111 111 124577778888888999999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 434 LVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
.+-...+.+ .| ..+--.....-..|+...|..++++....+
T Consensus 1692 all~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 887777765 33 345556677778899999999998877543
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.57 E-value=2.8e+02 Score=30.52 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEG--QISPDGVTMNTVLCFFCKAGMVD------VAIELYKSRSEFGLSPNGIVYNYL 383 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 383 (806)
+++.+|..+|++..+.++++..... |-+.=...||..|+-..+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999999888764 22223446777777778888653 3333333332 45677788888
Q ss_pred HHHHHcCCChhHHHHHHHHHHh
Q 047492 384 INSLCGDGSTHEAYEVLKNSID 405 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~ 405 (806)
+.+-...-+..-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7776554444444444444443
No 437
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=33.29 E-value=5.7e+02 Score=26.56 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=53.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HH-----HHhcCChhHHHHHHHHHhhc
Q 047492 405 DHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI---SA-----LCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 405 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~-----~~~~~~~~~a~~~~~~~~~~ 476 (806)
...+.||..+.+.+...++..-..+-...+|+-..+.+ .|-.+.+-+++ ++ -.+...-+++.++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 45577888888877777777777777778887777765 33333333222 11 12345567777777777543
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 047492 477 NKVASENTYIQLIHGFNK 494 (806)
Q Consensus 477 ~~~~~~~~~~~li~~~~~ 494 (806)
-..-|..-+-.|...|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 222255556666665543
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.87 E-value=3e+02 Score=23.11 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCcchHHHHHHH
Q 047492 149 IALHLFGKMRFQGMDLD-DYAYHVLLNALVEQGCFDAVAVVSKQ 191 (806)
Q Consensus 149 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 191 (806)
.+.++|..|...|+-.. +.-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776655433 23455555556666666666666654
No 439
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=32.63 E-value=1.5e+02 Score=21.62 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHhcCCCCCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCC
Q 047492 27 LKIFQILSTHDDEDSASRFAADQALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHF 92 (806)
Q Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~ 92 (806)
+.+...++..+...+ .+.+...+.++ ..+.|..+..+|..|.. .++-++|-|+..+.++
T Consensus 5 rA~LE~l~~~p~~~s--~e~a~~l~egL-~nLrp~~lq~LL~~C~s----vKvkRLfl~lA~~~~h 63 (69)
T PF11459_consen 5 RAILELLSEVPKRQS--FEEADELMEGL-RNLRPRVLQELLEHCTS----VKVKRLFLYLAERAGH 63 (69)
T ss_pred HHHHHHHHhCCccCC--HHHHHHHHHHH-hhcCHHHHHHHHHHCcc----HHHHHHHHHHHHHcCC
Confidence 345666666555442 22333333333 56799999999999863 4557889888776554
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.47 E-value=73 Score=18.13 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=6.4
Q ss_pred chhhHHHHHHHHHc
Q 047492 726 VSQDIEGLQKMIEQ 739 (806)
Q Consensus 726 ~~~A~~~~~~~~~~ 739 (806)
.+.|..+|+++.+.
T Consensus 3 ~~~~r~i~e~~l~~ 16 (33)
T smart00386 3 IERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445544443
No 441
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=32.30 E-value=6.5e+02 Score=26.91 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=60.7
Q ss_pred hhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh---hccccchhhHHHHHHHHHcCCCCChhhHHHHHH
Q 047492 677 FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF---SGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLR 753 (806)
Q Consensus 677 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 753 (806)
..-+.++..+.+.|...+|...+.......|++...+..+|..- ..|| ...+.+.++.|... +..|+..|---+.
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDYMK 538 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence 34456777777888888888888888888888877777776543 2333 67777788877764 3366666655444
Q ss_pred HHhh-hcHHHHHHHHHHH
Q 047492 754 RLSV-SEIDHACELFNRM 770 (806)
Q Consensus 754 ~~~~-g~~~~A~~~~~~m 770 (806)
-=.. |+.+.+-.++.+.
T Consensus 539 ~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRA 556 (568)
T ss_pred hhccCCCcccccHHHHHH
Confidence 3334 6666665555443
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.11 E-value=2.5e+02 Score=22.18 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHH
Q 047492 111 LTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHV 171 (806)
Q Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 171 (806)
+.+...+-++.....+....+-....|--.|++.|+.+.|.+-|+.=+.. .|...+|--
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~fmD 110 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVFMD 110 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhHHH
Confidence 34556677888877766666666677888899999999999999887655 666555543
No 443
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.05 E-value=5.9e+02 Score=27.61 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 275 DVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456667777777777777777764
No 444
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.38 E-value=6.5e+02 Score=26.47 Aligned_cols=31 Identities=3% Similarity=-0.124 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLF 409 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 409 (806)
+...-|..+.+.+++..|-.+-+++++.+..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 3444556666777777777777777766543
No 445
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.85 E-value=7.3e+02 Score=26.73 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 047492 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPG 411 (806)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 411 (806)
+...+..++.+....+....|+.++.+|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444445555555444445566666666666665443
No 446
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.98 E-value=2.6e+02 Score=24.92 Aligned_cols=48 Identities=8% Similarity=-0.003 Sum_probs=30.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYD 658 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 658 (806)
.++..+...+..-.|.++++.+.+.+..++..|...-++.+...|-+.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 444555455555667777777777776666666555556666666543
No 447
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=28.96 E-value=9.5e+02 Score=27.73 Aligned_cols=24 Identities=8% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.++..+.++|+.+.|.+..++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456667788999999988887665
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.14 E-value=1.8e+02 Score=20.72 Aligned_cols=33 Identities=12% Similarity=-0.041 Sum_probs=16.3
Q ss_pred hcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA 175 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 175 (806)
..|++-+|-++++.+-.....+....+..+|..
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 456666666666666543222233444555444
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.48 E-value=2.2e+02 Score=27.35 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=10.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhh
Q 047492 277 WLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~ 297 (806)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344445555555555555544
No 450
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.29 E-value=3.9e+02 Score=25.01 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHcCCChhHHHHHHHHHH------hCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhh-------------hccCcchh
Q 047492 651 LCSTKNYDMVVGVMNHLE------GHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGML-------------INEQSKIS 711 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~~~~~~~~ 711 (806)
+.....+++|.+.+.-.. +.....-..++--+.|.|-..|+.+.....++.+. ........
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRM 770 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~~~~~m 770 (806)
+.-.+...+.+.|+.++|.+.|.++...+-....... .+.|.+.|+.+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l-----------~~~AR~~w~~i 214 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKL-----------KDMARDQWQLI 214 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHH-----------HHHHHHHHHhC
No 451
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.22 E-value=1.2e+02 Score=30.27 Aligned_cols=90 Identities=13% Similarity=0.044 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChh-hHHHHHHHHhh-hcHHHHHHH
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTY-TYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~-g~~~~A~~~ 766 (806)
.|...+|+..+...+...|+....+..-..+|.+.++...|+.-+....+. +||.. .|-.--.+-.. |+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHH
Confidence 344555555555555555555555555556677777777777777777764 44432 23222222233 888888888
Q ss_pred HHHHHHcCCCCChh
Q 047492 767 FNRMRRKGYEPDQW 780 (806)
Q Consensus 767 ~~~m~~~g~~p~~~ 780 (806)
+......++.+...
T Consensus 205 l~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 205 LALACKLDYDEANS 218 (377)
T ss_pred HHHHHhccccHHHH
Confidence 88877777665543
No 452
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.09 E-value=6.4e+02 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=17.1
Q ss_pred CCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhH
Q 047492 91 HFHHTRATFHAIFKLLHCAKLTPLMVDFLENYK 123 (806)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 123 (806)
+...+......+++. ..|+...|..+++++.
T Consensus 197 gi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 197 NVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred CCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 444555555544432 3466667777776643
No 453
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.02 E-value=5.5e+02 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047492 591 ILMLQSYLKRKNG-IPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMY 638 (806)
Q Consensus 591 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 638 (806)
...+..++..+.+ .|.+ +..++-=+...|+++.|+++.+..+++|+.
T Consensus 68 ~p~V~g~L~~g~~~qd~V-l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 68 LPWVEGVLAAGAGYQDDV-LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred HHHHHHHHHcCCCCCCCe-eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 3345555555432 2322 333333455789999999999999988755
No 454
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=26.94 E-value=2.1e+02 Score=19.55 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
.+.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 344566777777777777777776 5666443
No 455
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.83 E-value=7.8e+02 Score=26.86 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHh
Q 047492 623 NLAWGFMREM-RHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRG 701 (806)
Q Consensus 623 ~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 701 (806)
++....+... .+.|+..+......++. ...|++..|...++.+...+-.. +...+..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~--~s~GdlR~aln~Lekl~~~~~~I---t~~~V~~----------------- 235 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVAR--LADGAMRDAESLLERLLALGTPV---TRKQVEE----------------- 235 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCCCC---CHHHHHH-----------------
Confidence 3444444443 34677777776666653 34688888988888876543221 1111110
Q ss_pred hhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCC
Q 047492 702 MLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPL 743 (806)
Q Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 743 (806)
+. + .+.......++++. ..++..+|+.+++++...|..|
T Consensus 236 ~l-~-~~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 236 AL-G-LPPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HH-C-CCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 00 1 12222333444444 4477778888888888776443
No 456
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.48 E-value=7.7e+02 Score=25.88 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYP--SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR 672 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 672 (806)
...|+.-|.-.|+..+|.+..+++- ++- ....+.+++.+..+.|+-+....+++.+.+.|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3467778888888888888777653 222 455677888888888888877888887777664
No 457
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.35 E-value=3e+02 Score=27.32 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=20.4
Q ss_pred CCChhhHHHHHHhhhcCCChHHHHHHH
Q 047492 549 ETNFQIYNFFIDGAGHVKRPDLARAVY 575 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
.-|+..|..+..+|.-.|+...+.+-+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 457888999999998888776655433
No 458
>PHA01351 putative minor structural protein
Probab=26.23 E-value=9.4e+02 Score=26.80 Aligned_cols=140 Identities=10% Similarity=0.072 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCC-----CCccchHHHHHHhhccCC----------HH-----HHHHHHHHhHhC-----CCC-CCHHh-H
Q 047492 186 AVVSKQISMRGF-----ENDVTRTIMLKCLCKQKK----------ID-----EAVEYFQQLVSG-----REC-VSGFM-I 238 (806)
Q Consensus 186 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~----------~~-----~a~~~~~~~~~~-----~~~-~~~~~-~ 238 (806)
.+++++..+.|. .+..+|..+++...-.|+ ++ -+.++++.+.++ |-+ .|..- -
T Consensus 369 ~rl~qr~veqgir~fvv~p~kayq~i~s~~nl~gkdlf~k~f~ley~ya~qr~~rq~lrsllsralsnfgrpyid~~yl~ 448 (1070)
T PHA01351 369 ARLLQRVVEQGIRQFVVTPQKAYEEIISNINLTGKELFLKTFTLEYEYAVQRIVRQFLRSLLSRALSNFGRPYLDFKYLD 448 (1070)
T ss_pred HHHHHHHHHHhHHHHeeCcHHHHHHHHhcCCccchhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCcceehHHHH
Confidence 456666666664 245577777766555553 11 233344444432 211 13222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC--CHHHHHHHHHhhhhcCCCCCCcccHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG--RLDLALEFLKSKNSLEGYVPEVFRFNFLVSR 316 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 316 (806)
.+.-..+-..|-+++...+|+.|......--+....-..++..++.| +.+++.+.|+.. | -+...-..+++.
T Consensus 449 st~~~lfkel~~p~~v~~~f~~mi~qsqliq~nqll~~~l~sl~skGi~DqkkIke~LKa~----g--fnks~~d~~L~~ 522 (1070)
T PHA01351 449 STIAKLFKDLGYPEEVRTVFDTMITQSQLIQTNQLLLRQLQQIVSLGIFDQKKIKEELKAN----K--FNEQVALQILES 522 (1070)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccccHHHHHHHHHhc----C--ccHHHHHHHHHH
Confidence 34445566778899999999998875222222233344455667777 567777777653 2 345555566666
Q ss_pred HHhcCCHHHHHHHHH
Q 047492 317 LLKENRLMEVFDLFM 331 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~ 331 (806)
+.+--..+..+++++
T Consensus 523 ~~n~a~iesqIK~LQ 537 (1070)
T PHA01351 523 ELQFAQLQNQLKEYQ 537 (1070)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.11 E-value=1.5e+02 Score=28.52 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=37.0
Q ss_pred HHHHHHhh-hcHHHHHHHHHHHHHc----C-CCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 750 ILLRRLSV-SEIDHACELFNRMRRK----G-YEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 750 ~li~~~~~-g~~~~A~~~~~~m~~~----g-~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
-+..-|.. |++++|.++|+.+... | ..+...+...+..+..+.|+.++...+.=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34555666 8888888887777422 2 2344556666777778888888877766555
No 460
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.09 E-value=1.5e+02 Score=24.83 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHhhhhccCCHHHHHHHHH
Q 047492 761 DHACELFNRMRRKGYEPDQ-WTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
++..++|..|..+|+--.. .-|......+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456788888888765443 344556666778899999988876
No 461
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.89 E-value=5.1e+02 Score=23.62 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
+++-.|-+..+|.+..++++.|-+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777788888888877664
No 462
>PTZ00131 glycophorin-binding protein; Provisional
Probab=25.87 E-value=5.5e+02 Score=23.94 Aligned_cols=254 Identities=7% Similarity=0.101 Sum_probs=126.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh----------------HHHHHHHHHccCCcHHHHHHHHHhHhhCCC
Q 047492 486 IQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL----------------HRAVIRCLCNMETPAKQFLQLLNMQLSHQE 549 (806)
Q Consensus 486 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----------------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (806)
..++.+++..-.+.+-+.+|-++... ..|+... -..++.+++......+.+..+.+......+
T Consensus 116 gqimkawaadpeyrkh~~i~y~ilt~-tdpnde~errnadnkedltsadpegqimka~aadpeyrkhl~i~y~ilt~tdp 194 (413)
T PTZ00131 116 GQIMKAWAADPEYRKHIEIFYKILTH-TDPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEIFYKILTHTDP 194 (413)
T ss_pred cHHHHHHhcCHHHHHHHHHHHHHHcc-CCCchHhhhcccccccccccCCcchHHHHHHhcCHHHHHHHHHHHHHHccCCC
Confidence 45677777777777777777777653 2333221 123445554444433333333332222111
Q ss_pred ---CChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHH
Q 047492 550 ---TNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAW 626 (806)
Q Consensus 550 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 626 (806)
.....-..++.+|+..-.+.+-.++|.++... ..|+..| +...-..++.+|+..-.+.+-+
T Consensus 195 nd~tsadpegqimka~aadpeyrkh~~v~~~ilt~-tdpndet---------------sadpegqimka~aadpey~kh~ 258 (413)
T PTZ00131 195 NDDTSADPEGQIMKAWAADPEYRKHLEVFHKILTH-TDPNDET---------------SADPEGQIMKAWAADPEYLKHL 258 (413)
T ss_pred CCcccCCcchHHHHHHhcCHHHHHHHHHHHHHHcc-CCCCccc---------------cCCcchHHHHHHhcCHHHHHHH
Confidence 11222456667776666666667777776643 2444443 1112345666666666666666
Q ss_pred HHHHHHHhCCCCCCHHH----HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhh
Q 047492 627 GFMREMRHNGMYPSMEC----YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGM 702 (806)
Q Consensus 627 ~~~~~m~~~g~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 702 (806)
.+|-+++.+ ..|+..| =..++.+|+....+..-..+|-+++..- .|+..+-. +..+.
T Consensus 259 ~i~y~ilth-tdpndetsadpegqimka~aadpey~kh~~i~y~iltnt-dpnde~er-------rnadn---------- 319 (413)
T PTZ00131 259 EIFYKILTH-TDPNDETSADPEGQIMKAWAADPEYLKHLEIFYKILTNT-DPNDEVER-------RNADN---------- 319 (413)
T ss_pred HHHHHHHcc-CCCcccccCCcchHHHHHHhcCHHHHHHHHHHHHHHcCC-CCchHhhh-------ccccc----------
Confidence 666666653 2222221 2346666666666666666665554332 22111100 00000
Q ss_pred hhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh----------------hhHHHHHHHHhh-hcHHHHHH
Q 047492 703 LINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT----------------YTYNILLRRLSV-SEIDHACE 765 (806)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~-g~~~~A~~ 765 (806)
...--....-..++.+|+..-.+.+-+++|-+++... .|+. ..-..++.+|+. -.+.+-++
T Consensus 320 -kedltsadpegqimka~aadpeyrkh~~i~y~ilt~t-dpnd~~errnadnkedltsadpegqimka~aadpeyrkh~~ 397 (413)
T PTZ00131 320 -KEDLTSADPEGQIMKAWAADPEYRKHLEIFYKILTHT-DPNDDVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLE 397 (413)
T ss_pred -ccccccCCcchHHHHHHhcChHHHHHHHHHHHHHccC-CCchhhhhhccccccccccCCcchHHHHHHhcCHHHHHHHH
Confidence 0000111112345555665555555666666665542 2211 123456788888 78888888
Q ss_pred HHHHHHHcCCCCC
Q 047492 766 LFNRMRRKGYEPD 778 (806)
Q Consensus 766 ~~~~m~~~g~~p~ 778 (806)
+|.++... ..|+
T Consensus 398 v~~~iltn-tdpn 409 (413)
T PTZ00131 398 VFHKILTN-TDPN 409 (413)
T ss_pred HHHHHHcC-CCCC
Confidence 88887753 3443
No 463
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=25.45 E-value=2.8e+02 Score=21.23 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHhcCCCCCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHH
Q 047492 49 QALSELGIRLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLM 115 (806)
Q Consensus 49 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (806)
..|..+. -++++..+.|.......++..+|..+++-+.++++ .|...+++|...|.-..|
T Consensus 22 ~il~~L~-~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~r~~~------Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 22 EVLPYLT-CLTAEDKERIQAAENNSGNIKAAWTLLDTLVRRDN------WLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHHhhCC-cCCHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC------hHHHHHHHHHHcCCHHHH
Confidence 3444444 67777777777765556667777777777663332 566666777666654444
No 464
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.29 E-value=7.9e+02 Score=25.58 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=30.6
Q ss_pred HhhccCCHHHHHHHHHHhHhCCCCCCHH--hHHHHHHHHHh--cCCHHHHHHHHHHhhh
Q 047492 209 CLCKQKKIDEAVEYFQQLVSGRECVSGF--MIGIVVDALCK--NSRFEQAGKLLEDFKD 263 (806)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~ 263 (806)
.+.+.+++..|.++|+.+.++ ++++.. .+..+..+|.. ..++++|.+.|+....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777765 433332 33444444443 4556666666666544
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.20 E-value=2.4e+02 Score=25.19 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHhHhCCC
Q 047492 214 KKIDEAVEYFQQLVSGRE 231 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~ 231 (806)
++.-.|.++++.+.+.+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~ 56 (169)
T PRK11639 39 PGAISAYDLLDLLREAEP 56 (169)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 333344444444444443
No 466
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.11 E-value=8.3e+02 Score=25.78 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=22.4
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047492 311 NFLVSRLLK---ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCF 351 (806)
Q Consensus 311 ~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 351 (806)
..+++++.+ ..+.+.|+.++..|.+.|..|....-..++.+
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334444443 36677777777777777665554433333333
No 467
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=25.00 E-value=2.4e+02 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHcCCChhHHHHHHHHHHhCCC
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGR 672 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~ 672 (806)
+...|+++.|.++.+.+.++|.
T Consensus 58 ~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 58 LFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhcccCHHHHHHHHHHHHHcCC
Confidence 4444555555555555554443
No 468
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.50 E-value=2.7e+02 Score=19.84 Aligned_cols=16 Identities=6% Similarity=0.306 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHHHHH
Q 047492 319 KENRLMEVFDLFMDMK 334 (806)
Q Consensus 319 ~~~~~~~a~~~~~~m~ 334 (806)
+.|++-+|.++++++=
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3444445555555443
No 469
>PLN03025 replication factor C subunit; Provisional
Probab=24.27 E-value=7.4e+02 Score=24.92 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhh
Q 047492 623 NLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGM 702 (806)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 702 (806)
+-...+-....+.|+..+......++.... |+...+...++......-..+......+.
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~------------------- 220 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVC------------------- 220 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHc-------------------
Q ss_pred hhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHHHHHHHHHcCCCCChh
Q 047492 703 LINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
..+.......++..+..++.++|+..+.+|...|+.|...
T Consensus 221 --------------------------------------~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 221 --------------------------------------DQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred --------------------------------------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
No 470
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.03 E-value=9.7e+02 Score=26.22 Aligned_cols=131 Identities=8% Similarity=-0.018 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH-------HHhCCCCCC-------------HHHHH---HHHHHHHcCCChhHHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMRE-------MRHNGMYPS-------------MECYE---ELIKLLCSTKNYDMVVGVMN 665 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~-------m~~~g~~p~-------------~~~~~---~l~~~~~~~g~~~~A~~~~~ 665 (806)
.-.+...|..+|+.+.|..+..+ ...-.+.|. ...|- ..+..+.+.|-+..|.++.+
T Consensus 287 LLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cK 366 (665)
T KOG2422|consen 287 LLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCK 366 (665)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 34556677888887776655444 333223332 22232 23456778999999999999
Q ss_pred HHHhCCCCCCchhHHHHHHHhh-ccccHHHHHHHHHhhh----hccCcchhhHHHHHHhhhcccc---chhhHHHHHHHH
Q 047492 666 HLEGHGRQVTSFIGNTLLLHAL-KTRDLYEAWIRLRGML----INEQSKISLLGQLIGVFSGCIK---VSQDIEGLQKMI 737 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 737 (806)
.+......-|+...-.+++.|. +..++.--+++++... ...-|+-.-.-+++..|..... .+.|...+.++.
T Consensus 367 lllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 367 LLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 9999887778888777887765 6667777777766664 1222333333455566655443 445666666665
Q ss_pred Hc
Q 047492 738 EQ 739 (806)
Q Consensus 738 ~~ 739 (806)
+.
T Consensus 447 ~~ 448 (665)
T KOG2422|consen 447 KH 448 (665)
T ss_pred Hh
Confidence 53
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.96 E-value=5.6e+02 Score=23.42 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=8.1
Q ss_pred cCChhHHHHHHHHHHH
Q 047492 425 DGKFEQMKDLVIFALE 440 (806)
Q Consensus 425 ~g~~~~a~~~~~~~~~ 440 (806)
.|+++.|.+.++-|.+
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3555555555555443
No 472
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=23.85 E-value=8e+02 Score=26.78 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPG 411 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 411 (806)
..-.|+.+.. .|+..+|+.+++++...|..|.
T Consensus 260 ~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 260 VIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3334444443 3788888888888888876543
No 473
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=23.79 E-value=95 Score=26.00 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=13.1
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCCCCChhh
Q 047492 752 LRRLSVSEIDHACELFNRMRRKGYEPDQWT 781 (806)
Q Consensus 752 i~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 781 (806)
++++..|+.++|..+++.++..|.+|-...
T Consensus 5 ~Da~L~G~~~ra~riL~~L~~Eg~ep~~lL 34 (125)
T PF14840_consen 5 IDALLAGDAKRALRILQGLQAEGVEPPILL 34 (125)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCccHHHHH
Confidence 334444555555555555555555544443
No 474
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=23.45 E-value=1.6e+02 Score=25.88 Aligned_cols=22 Identities=14% Similarity=-0.080 Sum_probs=12.8
Q ss_pred HHHHhcCChhhHHHHHHHHhhc
Q 047492 139 MGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
......++|+.|.++...+...
T Consensus 98 ~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 98 AQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 3344566777777777766543
No 475
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=5.8e+02 Score=23.36 Aligned_cols=16 Identities=38% Similarity=0.212 Sum_probs=10.1
Q ss_pred hccCCHHHHHHHHHhh
Q 047492 790 YNCLRTDEAERRLEEM 805 (806)
Q Consensus 790 ~~~g~~~eA~~~l~~m 805 (806)
.+.|++++|.++++-|
T Consensus 132 l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 132 LRKGSFEEAERFLKFM 147 (204)
T ss_pred HHhccHHHHHHHHHHH
Confidence 3567777777766544
No 476
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=8.4e+02 Score=25.17 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
..|...+-..|++++|..++.+..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~ 158 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ 158 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc
Confidence 345556666777777777776654
No 477
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.12 E-value=7.2e+02 Score=28.28 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=16.9
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 293 FLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMK 334 (806)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (806)
.+..+....|+..+......++... .|++..++.+++++.
T Consensus 186 ~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqai 225 (709)
T PRK08691 186 HLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 3333333334444433333333322 355555555555443
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.02 E-value=5.1e+02 Score=28.67 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=48.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCCHHH------HHHHHHHhhhCCCCCcchhhHHH
Q 047492 205 IMLKCLCKQKKIDEAVEYFQQLVSGR--ECVSGFMIGIVVDALCKNSRFEQ------AGKLLEDFKDRDDVVKLEKAYDV 276 (806)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~------A~~~~~~~~~~~~~~~~~~~~~~ 276 (806)
.|+.+|...|++..+.++++.....+ -..-...+|..|+.+.+.|.++- |.++++.. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 78888888888888888888887653 22234567777888888887642 22222222 34455667776
Q ss_pred HHHHHHH
Q 047492 277 WLRNLVR 283 (806)
Q Consensus 277 li~~~~~ 283 (806)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 6665443
No 479
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.83 E-value=2e+02 Score=20.71 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHG 407 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 407 (806)
++-++..+++..-.++++..+.+..++|
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333333333333333333
No 480
>PRK10941 hypothetical protein; Provisional
Probab=22.74 E-value=7.3e+02 Score=24.28 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
.+.+-.+|.+.++++.|.++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344666778888888888888888776655 6666666666788888888888888877663
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.19 E-value=4.5e+02 Score=26.01 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047492 328 DLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRS 369 (806)
Q Consensus 328 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 369 (806)
++++.|...++.|.-..|.-+.-.+.+.=.+.++..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555555555555555445555555555555555554
No 482
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=22.06 E-value=2.4e+02 Score=21.56 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=24.0
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhcc
Q 047492 747 TYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNC 792 (806)
Q Consensus 747 ~~~~li~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 792 (806)
....++..|..++++++...+.++...|+.++.. ...+...+...
T Consensus 7 ~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~I-l~~l~~~l~~~ 51 (89)
T PF08542_consen 7 VIEEILESCLNGDFKEARKKLYELLVEGYSASDI-LKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHH-HHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHh
Confidence 3444555555567777777777777666665543 33344444444
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.79 E-value=3.2e+02 Score=28.54 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhc--C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRM--N-----KVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
....|++.++-.|++..|.++++.+.-. + +.....+|..+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999999988765321 1 11145567778888999999999999998764
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.47 E-value=7.5e+02 Score=24.57 Aligned_cols=57 Identities=12% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 362 IELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 456666666667777666666666666666666677777766542 222555555554
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.34 E-value=5.4e+02 Score=22.24 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047492 393 THEAYEVLKNSIDHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 426 (806)
.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444334444333444444333
No 486
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=21.28 E-value=4.1e+02 Score=21.78 Aligned_cols=35 Identities=6% Similarity=0.179 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 047492 321 NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAG 356 (806)
Q Consensus 321 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 356 (806)
|+.++....+=.+.. |...|...+...+.++...|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 555555544444433 45556666666666655444
No 487
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.15 E-value=86 Score=23.40 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=21.6
Q ss_pred ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
..|+.+++.+++++..+.|.+|.....+.+..+...
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 446666677777777766666666555555555544
No 488
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=21.15 E-value=9.6e+02 Score=25.07 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=39.2
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHH---HH-----HHhcCCHHHHHHHHHHHHhCC
Q 047492 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLV---SR-----LLKENRLMEVFDLFMDMKEGQ 337 (806)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~~-----~~~~~~~~~a~~~~~~m~~~g 337 (806)
.+.||..+.+-+...++..-..+....+|+-..+ .+ .|-.+-|-.+| ++ -.+...-++++++++.|...-
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q-qa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ-QA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4455555555444444444444444444444443 11 22222222222 10 112334566777777666542
Q ss_pred CCCChhhHHHHHHHHHH
Q 047492 338 ISPDGVTMNTVLCFFCK 354 (806)
Q Consensus 338 ~~~~~~~~~~ll~~~~~ 354 (806)
-.-|..-+-.|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 22345555555555543
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.14 E-value=6.3e+02 Score=22.94 Aligned_cols=20 Identities=30% Similarity=0.301 Sum_probs=10.2
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 047492 386 SLCGDGSTHEAYEVLKNSID 405 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~ 405 (806)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44455555555555555443
No 490
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.01 E-value=4.1e+02 Score=22.98 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHhc-CChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 137 LVMGYALA-GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 137 li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
++..+... +.+-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 33444443 45667777777777776555666666666677666654
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.99 E-value=2.6e+02 Score=22.80 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcc
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFD 183 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 183 (806)
++..+...+.+-.|-++++.+.+.+...+..|....|+.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444445556667777777776665566666666666776666543
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.96 E-value=5.1e+02 Score=21.77 Aligned_cols=11 Identities=18% Similarity=0.745 Sum_probs=6.3
Q ss_pred hhhhhhhhhcc
Q 047492 78 SCLKFFDWAGR 88 (806)
Q Consensus 78 ~al~~~~~~~~ 88 (806)
.-+++..|+..
T Consensus 24 ~w~~yI~W~~~ 34 (125)
T smart00777 24 LWLRYIKWTEE 34 (125)
T ss_pred HHHHHHHHHHH
Confidence 33566777653
No 493
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.84 E-value=1.3e+03 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.060 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRSEFGLS 374 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (806)
.+..++..+. .++..+++.+++++...|+.
T Consensus 248 ~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 248 YMVRLLDALA-AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Confidence 3444444333 36666666666666665543
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.38 E-value=2.6e+02 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=17.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047492 390 DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 426 (806)
.+..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3344445555555555444444444444444444444
No 495
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.36 E-value=5.8e+02 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
...+++.++-.||+..|++.++.+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc
Confidence 344556666666666666666554
No 496
>PRK07914 hypothetical protein; Reviewed
Probab=20.36 E-value=8.9e+02 Score=24.38 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhh
Q 047492 626 WGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEG-HGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLI 704 (806)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 704 (806)
..+-+.+.+.|+..+......++..+. ++......-++++.- .|-..+..... ....
T Consensus 135 ~wi~~~a~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~It~e~V~--------------------~~v~ 192 (320)
T PRK07914 135 DFVRKEFRSLRVKVDDDTVTALLDAVG--SDLRELASACSQLVADTGGAVDAAAVR--------------------RYHS 192 (320)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHhcCCCCCcCHHHHH--------------------HHcC
Confidence 334555666788888887777766544 466666665665532 12111111111 1110
Q ss_pred ccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 705 NEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 705 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
.........++++ ...|+..+|..+++++...|.+|-
T Consensus 193 --~~~~~~vf~L~dA-i~~g~~~~A~~~l~~L~~~ge~p~ 229 (320)
T PRK07914 193 --GKAEVKGFDIADK-AVAGDVAGAAEALRWAMMRGEPHV 229 (320)
T ss_pred --CCeechHHHHHHH-HHCCCHHHHHHHHHHHHHCCCchH
Confidence 0111122233333 345788889999999988876663
No 497
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=20.18 E-value=5.9e+02 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=16.8
Q ss_pred CCccchHHHHHHhhccCCHHHHHHHHHHhH
Q 047492 198 ENDVTRTIMLKCLCKQKKIDEAVEYFQQLV 227 (806)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 227 (806)
.+..+...+.-++...|+...+.++++.+.
T Consensus 130 ~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 130 QDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 344444444455555566666666666665
No 498
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.04 E-value=2.3e+02 Score=29.79 Aligned_cols=106 Identities=10% Similarity=-0.032 Sum_probs=59.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHH-HHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccc
Q 047492 648 IKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL-LHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKV 726 (806)
Q Consensus 648 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 726 (806)
.+.+...+.++.|..++.++++.. |+...|...- .++++.+++..|+.-+..+.+..|.....|---..++.+-++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 344556777888888888877664 3333333322 5666777777777666666655544333332223333334455
Q ss_pred hhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 727 SQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 727 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
.+|...|+.... +.|+..-....+.-|-.
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 555555555555 35666655555555543
No 499
>PRK09857 putative transposase; Provisional
Probab=20.00 E-value=5.8e+02 Score=25.33 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS 392 (806)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 392 (806)
++.-....+++.+-...+..+...+..++.. +..++....+.++.++..++++.+.+. .+......-++..-+.+.|.
T Consensus 178 ll~k~i~~~dl~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~ 255 (292)
T PRK09857 178 LIQKHIRQRDLMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGE 255 (292)
T ss_pred HHHHHcCcHhHHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHhCCCCCCHHH
Q 047492 393 THEAYEVLKNSIDHGLFPGKKT 414 (806)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~ 414 (806)
-+++.++.++|...|+.++...
T Consensus 256 qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 256 QSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Done!