Query 047492
Match_columns 806
No_of_seqs 756 out of 4092
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 20:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.6E-38 1.6E-42 351.9 35.4 521 107-720 64-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-37 9.5E-42 345.5 38.2 525 141-790 63-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.2E-28 4.2E-33 261.6 24.9 203 327-529 10-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1E-28 3.4E-33 262.3 23.8 186 309-494 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.8E-24 2E-28 223.2 44.7 363 177-588 10-373 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.3E-24 1.8E-28 223.5 44.1 359 316-738 8-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.4E-21 1.2E-25 210.8 39.2 451 131-642 6-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.1E-20 1.1E-24 203.2 40.8 256 390-739 202-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4.2E-24 194.6 37.4 338 305-717 24-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-19 3.6E-24 195.1 36.5 315 128-454 23-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.5E-19 1.2E-23 195.9 39.4 444 131-674 25-495 (537)
12 3fp2_A TPR repeat-containing p 99.9 3E-19 1E-23 196.5 38.6 448 95-635 24-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 4.5E-15 1.6E-19 166.3 62.0 614 96-801 937-1585(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 1.5E-14 5E-19 162.3 60.8 599 58-766 951-1585(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.9E-16 6.5E-21 163.9 36.9 315 131-476 3-335 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.9E-16 6.5E-21 163.9 35.7 164 552-773 154-335 (359)
17 2ooe_A Cleavage stimulation fa 99.8 9.3E-15 3.2E-19 159.5 42.3 420 306-773 12-492 (530)
18 3hym_B Cell division cycle pro 99.8 7.2E-16 2.4E-20 157.5 31.3 271 128-405 19-298 (330)
19 3hym_B Cell division cycle pro 99.8 7.4E-16 2.5E-20 157.4 31.1 291 164-497 20-320 (330)
20 2xm6_A Protein corresponding t 99.7 1.3E-13 4.5E-18 148.7 46.9 274 320-671 92-397 (490)
21 2ooe_A Cleavage stimulation fa 99.7 4.6E-14 1.6E-18 154.0 43.4 428 154-634 2-491 (530)
22 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.8E-20 158.0 27.7 301 179-506 38-354 (368)
23 2xm6_A Protein corresponding t 99.7 4.9E-13 1.7E-17 144.2 48.0 352 130-512 38-433 (490)
24 1fch_A Peroxisomal targeting s 99.7 8.9E-16 3E-20 159.5 24.8 305 141-471 35-354 (368)
25 1b89_A Protein (clathrin heavy 99.7 3.5E-15 1.2E-19 150.1 27.2 238 143-423 15-252 (449)
26 4g1t_A Interferon-induced prot 99.7 4.7E-14 1.6E-18 152.0 37.0 346 343-740 95-460 (472)
27 1b89_A Protein (clathrin heavy 99.7 1.3E-15 4.4E-20 153.3 22.3 348 107-507 14-368 (449)
28 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-17 5.3E-22 180.2 9.0 118 271-388 127-247 (1134)
29 4eqf_A PEX5-related protein; a 99.7 2.7E-16 9.3E-21 163.1 17.8 264 482-804 65-352 (365)
30 3spa_A Mtrpol, DNA-directed RN 99.7 4.9E-17 1.7E-21 176.3 9.8 152 305-461 125-286 (1134)
31 4eqf_A PEX5-related protein; a 99.7 5E-15 1.7E-19 153.6 22.5 272 168-471 67-351 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 4.9E-14 1.7E-18 139.5 27.1 254 244-517 8-268 (291)
33 3cv0_A Peroxisome targeting si 99.6 6.8E-15 2.3E-19 149.9 21.3 275 450-805 24-312 (327)
34 3cv0_A Peroxisome targeting si 99.6 3E-14 1E-18 145.2 24.2 279 201-509 22-313 (327)
35 4g1t_A Interferon-induced prot 99.6 5.1E-13 1.7E-17 143.9 35.2 372 341-782 50-469 (472)
36 3mkr_A Coatomer subunit epsilo 99.6 1.4E-13 4.8E-18 136.3 28.2 254 210-479 9-267 (291)
37 3uq3_A Heat shock protein STI1 99.5 6.8E-13 2.3E-17 129.7 21.5 222 552-805 5-233 (258)
38 2pl2_A Hypothetical conserved 99.5 7.8E-13 2.7E-17 124.9 20.6 195 605-805 4-211 (217)
39 3uq3_A Heat shock protein STI1 99.5 3.6E-12 1.2E-16 124.5 24.5 222 274-510 8-235 (258)
40 2pl2_A Hypothetical conserved 99.5 8.3E-12 2.8E-16 117.8 21.8 199 305-509 3-212 (217)
41 3e4b_A ALGK; tetratricopeptide 99.4 2.9E-11 9.9E-16 128.1 27.0 378 313-773 9-421 (452)
42 3u4t_A TPR repeat-containing p 99.4 1.2E-11 4E-16 122.0 22.3 231 552-805 3-247 (272)
43 3e4b_A ALGK; tetratricopeptide 99.4 3E-11 1E-15 127.9 25.7 342 137-512 9-388 (452)
44 3u4t_A TPR repeat-containing p 99.4 5.4E-11 1.8E-15 117.2 25.9 235 276-517 8-254 (272)
45 2ho1_A Type 4 fimbrial biogene 99.4 6E-11 2E-15 115.3 25.5 199 308-510 38-237 (252)
46 2h6f_A Protein farnesyltransfe 99.4 7.4E-12 2.5E-16 128.1 19.4 228 552-805 97-344 (382)
47 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.5E-12 1.2E-16 126.0 16.6 219 145-370 19-243 (275)
48 4e6h_A MRNA 3'-END-processing 99.4 8.3E-09 2.8E-13 112.8 44.1 445 145-671 46-571 (679)
49 2vq2_A PILW, putative fimbrial 99.4 1.3E-10 4.3E-15 110.7 26.6 201 307-510 8-210 (225)
50 2ho1_A Type 4 fimbrial biogene 99.4 6.3E-11 2.2E-15 115.2 24.3 130 131-261 37-167 (252)
51 1ouv_A Conserved hypothetical 99.4 4.3E-10 1.5E-14 110.7 30.3 220 273-511 8-251 (273)
52 2vq2_A PILW, putative fimbrial 99.4 3.4E-11 1.1E-15 114.7 21.6 132 130-262 7-140 (225)
53 2h6f_A Protein farnesyltransfe 99.4 6.5E-11 2.2E-15 121.1 24.8 243 414-718 99-361 (382)
54 1ouv_A Conserved hypothetical 99.4 1.1E-09 3.7E-14 107.8 31.4 221 237-477 8-252 (273)
55 2q7f_A YRRB protein; TPR, prot 99.4 4.2E-11 1.4E-15 115.7 20.5 160 312-475 62-221 (243)
56 2q7f_A YRRB protein; TPR, prot 99.4 6E-11 2.1E-15 114.5 21.5 206 305-517 21-226 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.8E-11 9.6E-16 119.5 19.4 244 109-365 18-269 (275)
58 4e6h_A MRNA 3'-END-processing 99.4 1.6E-08 5.5E-13 110.5 42.1 480 181-720 47-584 (679)
59 3sf4_A G-protein-signaling mod 99.3 2.2E-11 7.5E-16 128.1 18.3 306 444-795 6-363 (406)
60 4a1s_A PINS, partner of inscut 99.3 3E-11 1E-15 127.3 16.8 162 135-298 52-250 (411)
61 4a1s_A PINS, partner of inscut 99.3 6.5E-11 2.2E-15 124.7 19.4 276 449-773 50-372 (411)
62 3sf4_A G-protein-signaling mod 99.3 4.2E-11 1.4E-15 125.9 17.3 61 131-193 9-74 (406)
63 3ro2_A PINS homolog, G-protein 99.3 1.3E-10 4.4E-15 118.5 19.3 280 450-804 8-328 (338)
64 3ro2_A PINS homolog, G-protein 99.3 7.8E-11 2.7E-15 120.1 17.4 275 134-441 8-332 (338)
65 2ond_A Cleavage stimulation fa 99.3 8.4E-10 2.9E-14 110.6 24.3 215 569-805 33-267 (308)
66 3vtx_A MAMA; tetratricopeptide 99.3 8.8E-10 3E-14 100.9 22.4 170 341-516 4-173 (184)
67 4abn_A Tetratricopeptide repea 99.3 2.8E-10 9.5E-15 121.3 21.6 201 546-770 96-318 (474)
68 2ond_A Cleavage stimulation fa 99.2 9.2E-10 3.2E-14 110.3 23.0 204 549-774 47-271 (308)
69 3vtx_A MAMA; tetratricopeptide 99.2 3.9E-10 1.3E-14 103.4 18.4 169 605-779 4-174 (184)
70 4abn_A Tetratricopeptide repea 99.2 2.6E-10 8.9E-15 121.6 19.5 211 568-804 84-317 (474)
71 3ulq_A Response regulator aspa 99.2 1E-09 3.5E-14 114.1 21.3 163 206-368 109-290 (383)
72 3ulq_A Response regulator aspa 99.2 9.3E-10 3.2E-14 114.4 20.7 231 277-510 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 8.5E-11 2.9E-15 118.3 12.0 134 128-261 24-179 (311)
74 3nf1_A KLC 1, kinesin light ch 99.2 1.9E-10 6.3E-15 115.9 13.2 168 203-370 30-223 (311)
75 1hz4_A MALT regulatory protein 99.1 1.8E-08 6E-13 104.3 26.9 232 137-368 20-279 (373)
76 3q15_A PSP28, response regulat 99.1 1E-08 3.5E-13 106.2 25.0 171 128-298 7-209 (378)
77 3q15_A PSP28, response regulat 99.1 1.1E-08 3.7E-13 106.0 24.1 163 344-510 184-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.1 1.2E-08 4E-13 93.3 20.3 163 344-510 10-172 (186)
79 1hz4_A MALT regulatory protein 99.0 5.1E-08 1.7E-12 100.8 26.2 271 100-370 18-321 (373)
80 3as5_A MAMA; tetratricopeptide 99.0 9.8E-09 3.3E-13 93.9 17.5 164 131-298 8-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.0 3.4E-09 1.2E-13 117.4 16.3 162 607-772 10-173 (723)
82 4i17_A Hypothetical protein; T 99.0 1.6E-08 5.5E-13 96.2 18.8 166 605-773 6-209 (228)
83 3edt_B KLC 2, kinesin light ch 99.0 6E-09 2E-13 103.0 14.7 26 379-404 254-279 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.0 2.4E-08 8.2E-13 110.6 20.4 163 307-473 9-171 (723)
85 3edt_B KLC 2, kinesin light ch 98.9 3.5E-09 1.2E-13 104.7 12.1 165 641-805 43-278 (283)
86 4i17_A Hypothetical protein; T 98.9 1.1E-07 3.6E-12 90.5 20.4 199 309-520 9-216 (228)
87 3mv2_B Coatomer subunit epsilo 98.8 1.8E-06 6.3E-11 83.2 25.6 184 326-518 85-287 (310)
88 3mv2_B Coatomer subunit epsilo 98.8 5.8E-07 2E-11 86.7 22.0 78 185-262 85-163 (310)
89 1qqe_A Vesicular transport pro 98.8 5.3E-08 1.8E-12 96.4 15.2 168 168-335 79-268 (292)
90 1qqe_A Vesicular transport pro 98.8 1.7E-07 6E-12 92.7 18.2 208 146-370 32-268 (292)
91 3qky_A Outer membrane assembly 98.8 1.7E-07 5.9E-12 91.1 17.4 185 608-798 17-251 (261)
92 2fo7_A Synthetic consensus TPR 98.8 3.3E-07 1.1E-11 78.3 17.2 128 380-510 4-131 (136)
93 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.9E-07 1.3E-11 86.1 18.9 179 608-804 6-209 (225)
94 2fo7_A Synthetic consensus TPR 98.8 2.1E-07 7.3E-12 79.5 15.1 129 133-263 3-131 (136)
95 2pzi_A Probable serine/threoni 98.7 1.9E-07 6.6E-12 104.2 16.5 183 617-804 402-601 (681)
96 3urz_A Uncharacterized protein 98.7 6E-07 2.1E-11 83.6 16.7 108 138-248 11-135 (208)
97 2uy1_A Cleavage stimulation fa 98.7 1.8E-05 6.1E-10 84.0 30.0 182 608-805 215-410 (493)
98 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.2E-07 2.8E-11 83.9 17.2 146 641-805 4-173 (225)
99 2uy1_A Cleavage stimulation fa 98.6 2.4E-05 8.2E-10 83.0 30.1 374 92-510 11-412 (493)
100 3dra_A Protein farnesyltransfe 98.6 6.5E-06 2.2E-10 80.4 23.6 216 549-787 64-301 (306)
101 3urz_A Uncharacterized protein 98.6 1.1E-06 3.8E-11 81.7 17.3 131 383-519 60-192 (208)
102 3qky_A Outer membrane assembly 98.6 2.1E-06 7.1E-11 83.4 19.6 186 95-299 14-223 (261)
103 2r5s_A Uncharacterized protein 98.6 2.4E-07 8.1E-12 83.7 12.0 159 608-804 8-169 (176)
104 3qou_A Protein YBBN; thioredox 98.6 8.5E-07 2.9E-11 87.3 16.3 164 639-804 115-280 (287)
105 3qou_A Protein YBBN; thioredox 98.6 6.2E-07 2.1E-11 88.3 14.9 166 165-334 116-282 (287)
106 2r5s_A Uncharacterized protein 98.6 5.4E-07 1.9E-11 81.3 13.3 161 99-262 9-171 (176)
107 3rjv_A Putative SEL1 repeat pr 98.6 2.7E-06 9.4E-11 79.3 18.0 160 609-777 21-201 (212)
108 4ga2_A E3 SUMO-protein ligase 98.6 3.3E-07 1.1E-11 80.0 11.0 138 354-496 9-148 (150)
109 2pzi_A Probable serine/threoni 98.6 9.3E-07 3.2E-11 98.6 16.8 174 318-497 402-583 (681)
110 3dra_A Protein farnesyltransfe 98.6 4.1E-05 1.4E-09 74.7 26.4 152 426-580 124-286 (306)
111 2ifu_A Gamma-SNAP; membrane fu 98.5 7.9E-07 2.7E-11 88.6 14.5 187 609-800 39-253 (307)
112 4ga2_A E3 SUMO-protein ligase 98.5 2.6E-07 8.9E-12 80.7 9.0 121 615-738 6-128 (150)
113 3rjv_A Putative SEL1 repeat pr 98.5 1.4E-05 4.6E-10 74.5 20.2 176 325-512 4-198 (212)
114 2vsy_A XCC0866; transferase, g 98.5 3.8E-06 1.3E-10 92.1 18.5 164 320-488 2-168 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.5 1.3E-06 4.3E-11 87.2 12.9 186 619-805 4-221 (307)
116 3u3w_A Transcriptional activat 98.4 9.6E-06 3.3E-10 80.2 18.6 175 556-772 79-265 (293)
117 3u3w_A Transcriptional activat 98.4 1.1E-05 3.8E-10 79.7 19.0 164 612-804 81-262 (293)
118 2vsy_A XCC0866; transferase, g 98.4 5.8E-06 2E-10 90.6 18.1 154 284-442 2-158 (568)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.4 6.6E-06 2.2E-10 76.9 15.5 127 608-739 8-150 (213)
120 3gw4_A Uncharacterized protein 98.4 1.8E-06 6.2E-11 80.0 10.7 120 617-737 3-134 (203)
121 3gyz_A Chaperone protein IPGC; 98.4 9.8E-07 3.3E-11 76.5 8.2 101 677-780 37-138 (151)
122 3gyz_A Chaperone protein IPGC; 98.4 5.5E-06 1.9E-10 71.7 12.8 96 643-739 38-133 (151)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.3 3.5E-05 1.2E-09 71.9 19.3 122 384-510 13-149 (213)
124 2qfc_A PLCR protein; TPR, HTH, 98.3 1.5E-05 5E-10 78.8 16.7 166 610-804 79-262 (293)
125 1a17_A Serine/threonine protei 98.3 9E-06 3.1E-10 72.2 13.2 96 132-228 14-109 (166)
126 2vgx_A Chaperone SYCD; alterna 98.3 1.9E-06 6.4E-11 74.9 8.3 109 663-773 9-118 (148)
127 1a17_A Serine/threonine protei 98.3 3E-05 1E-09 68.8 16.6 129 379-510 15-145 (166)
128 4f3v_A ESX-1 secretion system 98.3 2.5E-06 8.5E-11 81.2 9.7 184 615-805 16-234 (282)
129 3q7a_A Farnesyltransferase alp 98.3 4.7E-05 1.6E-09 75.0 19.0 219 564-805 66-328 (349)
130 2c2l_A CHIP, carboxy terminus 98.3 3.8E-06 1.3E-10 82.2 11.3 193 551-773 3-199 (281)
131 4gco_A Protein STI-1; structur 98.2 3E-05 1E-09 64.9 14.8 94 415-510 16-109 (126)
132 2qfc_A PLCR protein; TPR, HTH, 98.2 2.6E-05 8.9E-10 77.0 16.8 101 554-668 77-182 (293)
133 3q7a_A Farnesyltransferase alp 98.2 0.00045 1.5E-08 68.1 25.1 241 318-580 65-330 (349)
134 2e2e_A Formate-dependent nitri 98.2 1.2E-05 4.2E-10 72.4 13.2 119 389-510 22-143 (177)
135 1na0_A Designed protein CTPR3; 98.2 4.5E-05 1.5E-09 63.5 15.8 96 379-476 11-106 (125)
136 4gco_A Protein STI-1; structur 98.2 3.5E-05 1.2E-09 64.5 14.8 105 379-486 15-119 (126)
137 1na0_A Designed protein CTPR3; 98.2 2E-05 6.7E-10 65.8 13.3 99 131-230 9-107 (125)
138 2c2l_A CHIP, carboxy terminus 98.2 9.1E-06 3.1E-10 79.5 12.2 189 607-805 5-196 (281)
139 4f3v_A ESX-1 secretion system 98.2 1.5E-05 5.1E-10 75.9 13.0 128 239-371 106-237 (282)
140 2lni_A Stress-induced-phosphop 98.2 1.8E-05 6.3E-10 67.0 12.6 100 128-228 13-112 (133)
141 1p5q_A FKBP52, FK506-binding p 98.2 1.7E-05 5.7E-10 80.0 14.1 129 642-771 148-292 (336)
142 2lni_A Stress-induced-phosphop 98.2 4E-05 1.4E-09 64.8 14.3 96 379-476 18-113 (133)
143 3gw4_A Uncharacterized protein 98.2 1.3E-05 4.4E-10 74.1 11.8 96 202-297 68-173 (203)
144 2vyi_A SGTA protein; chaperone 98.2 2E-05 6.7E-10 66.5 11.9 119 130-250 11-129 (131)
145 2vyi_A SGTA protein; chaperone 98.1 5.1E-05 1.8E-09 63.8 14.4 114 380-496 15-128 (131)
146 2vgx_A Chaperone SYCD; alterna 98.1 1.2E-05 4.1E-10 69.7 10.1 95 168-263 23-117 (148)
147 2e2e_A Formate-dependent nitri 98.1 1.9E-05 6.4E-10 71.1 11.7 117 179-298 23-142 (177)
148 2xcb_A PCRH, regulatory protei 98.1 1.1E-05 3.9E-10 69.4 9.4 95 678-773 20-115 (142)
149 1p5q_A FKBP52, FK506-binding p 98.1 2.9E-05 9.9E-10 78.2 13.4 130 130-262 146-292 (336)
150 4b4t_Q 26S proteasome regulato 98.0 0.00014 4.6E-09 76.6 17.4 193 612-804 10-241 (434)
151 2fbn_A 70 kDa peptidylprolyl i 98.0 5.6E-05 1.9E-09 69.5 12.6 129 644-773 41-186 (198)
152 3upv_A Heat shock protein STI1 98.0 0.00015 5.2E-09 60.6 14.2 95 414-510 6-100 (126)
153 2kck_A TPR repeat; tetratricop 98.0 4.2E-05 1.4E-09 62.3 10.3 98 707-805 3-103 (112)
154 1elw_A TPR1-domain of HOP; HOP 98.0 0.00013 4.5E-09 59.8 13.5 99 131-230 4-102 (118)
155 3dss_A Geranylgeranyl transfer 98.0 0.002 6.8E-08 63.2 23.1 216 564-805 41-301 (331)
156 4gcn_A Protein STI-1; structur 97.9 4.8E-05 1.6E-09 63.8 10.2 104 679-784 11-121 (127)
157 3upv_A Heat shock protein STI1 97.9 8.9E-05 3.1E-09 62.0 11.9 98 131-229 4-101 (126)
158 2xcb_A PCRH, regulatory protei 97.9 6.9E-05 2.4E-09 64.3 11.3 95 132-227 19-113 (142)
159 1elw_A TPR1-domain of HOP; HOP 97.9 0.00031 1.1E-08 57.6 15.1 59 415-474 41-99 (118)
160 3sz7_A HSC70 cochaperone (SGT) 97.9 7.2E-05 2.4E-09 66.2 11.4 99 130-229 10-108 (164)
161 2kck_A TPR repeat; tetratricop 97.9 6E-05 2.1E-09 61.3 9.9 97 131-228 6-105 (112)
162 3q49_B STIP1 homology and U bo 97.9 0.00012 4.2E-09 62.2 11.6 97 640-772 8-105 (137)
163 1hxi_A PEX5, peroxisome target 97.9 7.9E-05 2.7E-09 61.8 9.9 92 681-773 22-114 (121)
164 2dba_A Smooth muscle cell asso 97.9 0.00017 6E-09 62.2 12.7 98 130-229 27-128 (148)
165 3sz7_A HSC70 cochaperone (SGT) 97.9 9.3E-05 3.2E-09 65.4 11.1 99 640-739 10-108 (164)
166 4gcn_A Protein STI-1; structur 97.9 0.00011 3.9E-09 61.4 10.9 94 169-262 11-110 (127)
167 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00034 1.2E-08 64.1 14.8 94 413-508 89-183 (198)
168 3q49_B STIP1 homology and U bo 97.8 0.00044 1.5E-08 58.7 14.4 98 411-510 8-105 (137)
169 3dss_A Geranylgeranyl transfer 97.8 0.0046 1.6E-07 60.6 22.7 181 568-773 90-304 (331)
170 1elr_A TPR2A-domain of HOP; HO 97.8 4.9E-05 1.7E-09 64.0 7.8 97 688-786 16-119 (131)
171 2dba_A Smooth muscle cell asso 97.8 0.00087 3E-08 57.6 15.7 95 378-475 29-127 (148)
172 4b4t_Q 26S proteasome regulato 97.8 0.00091 3.1E-08 70.2 18.7 131 274-404 58-202 (434)
173 1hxi_A PEX5, peroxisome target 97.7 0.00027 9.4E-09 58.4 11.4 92 417-510 22-113 (121)
174 1elr_A TPR2A-domain of HOP; HO 97.7 0.00054 1.8E-08 57.4 13.3 95 415-510 7-107 (131)
175 2xev_A YBGF; tetratricopeptide 97.7 0.0005 1.7E-08 57.6 12.4 92 137-230 8-106 (129)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00023 7.8E-09 75.0 12.3 128 644-772 271-414 (457)
177 1wao_1 Serine/threonine protei 97.7 7.1E-05 2.4E-09 79.3 8.1 116 651-768 16-134 (477)
178 3ro3_A PINS homolog, G-protein 97.6 0.00019 6.6E-09 63.0 9.7 137 607-772 10-157 (164)
179 2xev_A YBGF; tetratricopeptide 97.6 0.00056 1.9E-08 57.3 11.8 93 609-703 5-103 (129)
180 3ro3_A PINS homolog, G-protein 97.6 0.00015 5.1E-09 63.7 8.6 104 607-739 50-158 (164)
181 3rkv_A Putative peptidylprolyl 97.6 9E-05 3.1E-09 65.4 7.0 109 641-773 11-126 (162)
182 3k9i_A BH0479 protein; putativ 97.6 7.2E-05 2.5E-09 61.6 5.7 82 180-262 4-88 (117)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00035 1.2E-08 73.6 12.3 129 130-261 267-412 (457)
184 1ihg_A Cyclophilin 40; ppiase 97.6 0.0002 6.7E-09 72.9 9.6 139 642-801 224-363 (370)
185 3rkv_A Putative peptidylprolyl 97.5 0.0011 3.8E-08 58.2 12.8 69 447-518 63-131 (162)
186 3k9i_A BH0479 protein; putativ 97.5 0.00014 4.7E-09 59.9 6.3 66 707-773 24-90 (117)
187 1ihg_A Cyclophilin 40; ppiase 97.5 0.00056 1.9E-08 69.5 11.3 137 608-765 225-362 (370)
188 1wao_1 Serine/threonine protei 97.5 0.00038 1.3E-08 73.7 10.3 118 386-506 15-134 (477)
189 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00029 1E-08 70.8 8.1 144 642-806 180-326 (338)
190 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00043 1.5E-08 69.6 8.7 145 132-298 180-326 (338)
191 2hr2_A Hypothetical protein; a 97.3 0.0012 4.1E-08 56.4 9.3 23 612-634 17-39 (159)
192 2hr2_A Hypothetical protein; a 97.3 0.0015 5E-08 55.8 9.9 28 133-160 13-40 (159)
193 2kat_A Uncharacterized protein 97.2 0.00084 2.9E-08 54.8 7.8 78 695-773 4-82 (115)
194 2l6j_A TPR repeat-containing p 97.2 0.00023 7.8E-09 57.8 4.0 90 710-802 4-101 (111)
195 3n71_A Histone lysine methyltr 97.2 0.001 3.6E-08 69.7 9.8 133 613-773 316-464 (490)
196 2kat_A Uncharacterized protein 97.2 0.0011 3.6E-08 54.2 7.8 77 185-262 4-80 (115)
197 1zu2_A Mitochondrial import re 97.2 0.0016 5.3E-08 55.5 8.7 70 653-723 14-93 (158)
198 1dce_A Protein (RAB geranylger 97.2 0.0095 3.2E-07 64.2 17.1 172 566-760 43-242 (567)
199 3lvg_A Clathrin heavy chain 1; 97.1 1E-07 3.5E-12 94.3 -19.5 235 129-401 52-286 (624)
200 2l6j_A TPR repeat-containing p 97.1 0.00028 9.5E-09 57.2 3.6 64 167-230 5-68 (111)
201 1dce_A Protein (RAB geranylger 97.1 0.023 7.9E-07 61.1 19.1 149 358-510 45-220 (567)
202 3n71_A Histone lysine methyltr 97.0 0.002 6.9E-08 67.6 9.4 105 607-739 352-464 (490)
203 3ma5_A Tetratricopeptide repea 97.0 0.0016 5.6E-08 51.4 6.6 84 707-791 4-89 (100)
204 1klx_A Cysteine rich protein B 96.9 0.029 9.9E-07 47.3 14.6 83 424-512 37-127 (138)
205 1klx_A Cysteine rich protein B 96.9 0.03 1E-06 47.1 14.2 110 322-442 10-127 (138)
206 1zu2_A Mitochondrial import re 96.8 0.004 1.4E-07 53.0 8.3 98 426-527 16-134 (158)
207 1na3_A Designed protein CTPR2; 96.8 0.0051 1.7E-07 47.2 8.6 63 132-195 10-72 (91)
208 1na3_A Designed protein CTPR2; 96.8 0.015 5.1E-07 44.5 10.9 55 420-475 17-71 (91)
209 3ma5_A Tetratricopeptide repea 96.4 0.019 6.6E-07 45.0 9.2 64 446-510 6-69 (100)
210 3u64_A Protein TP_0956; tetrat 96.3 0.077 2.6E-06 49.9 14.1 106 691-804 178-294 (301)
211 3mkq_A Coatomer beta'-subunit; 96.0 0.21 7.1E-06 57.1 19.3 26 343-368 682-707 (814)
212 2kc7_A BFR218_protein; tetratr 95.9 0.023 7.9E-07 44.4 7.3 55 685-739 9-64 (99)
213 3lvg_A Clathrin heavy chain 1; 95.8 0.0045 1.5E-07 62.0 3.5 265 199-502 53-324 (624)
214 2kc7_A BFR218_protein; tetratr 95.7 0.029 1E-06 43.7 7.4 61 611-673 5-67 (99)
215 3ly7_A Transcriptional activat 95.7 0.13 4.4E-06 50.7 13.1 76 704-783 271-347 (372)
216 3qww_A SET and MYND domain-con 95.6 0.026 9E-07 58.0 8.2 64 709-772 339-410 (433)
217 3ly7_A Transcriptional activat 95.6 0.11 3.8E-06 51.1 12.1 62 234-298 276-337 (372)
218 3mkq_B Coatomer subunit alpha; 95.5 0.95 3.3E-05 39.0 16.1 98 143-260 17-114 (177)
219 3qww_A SET and MYND domain-con 95.4 0.032 1.1E-06 57.4 8.3 91 564-669 310-410 (433)
220 3qwp_A SET and MYND domain-con 95.3 0.093 3.2E-06 54.0 11.1 96 559-669 294-399 (429)
221 3mkq_A Coatomer beta'-subunit; 95.1 0.37 1.3E-05 55.0 17.0 157 104-299 607-764 (814)
222 3qwp_A SET and MYND domain-con 95.1 0.072 2.5E-06 54.9 9.6 60 712-771 331-398 (429)
223 1wy6_A Hypothetical protein ST 95.1 1.1 3.7E-05 36.2 14.7 138 283-443 19-156 (172)
224 3bee_A Putative YFRE protein; 95.0 0.31 1E-05 37.3 10.8 67 444-511 3-72 (93)
225 1pc2_A Mitochondria fission pr 95.0 0.17 5.7E-06 42.6 9.7 87 429-518 15-105 (152)
226 3mkq_B Coatomer subunit alpha; 94.9 1.7 5.7E-05 37.5 16.7 100 245-367 15-114 (177)
227 1wy6_A Hypothetical protein ST 94.9 1.2 4.2E-05 35.8 15.4 67 306-373 90-156 (172)
228 3bee_A Putative YFRE protein; 94.4 0.2 6.9E-06 38.3 8.3 67 165-231 5-74 (93)
229 1pc2_A Mitochondria fission pr 94.1 0.33 1.1E-05 40.8 9.4 46 624-670 16-64 (152)
230 2v5f_A Prolyl 4-hydroxylase su 93.1 0.41 1.4E-05 37.5 8.2 23 135-157 9-31 (104)
231 2v5f_A Prolyl 4-hydroxylase su 92.7 0.56 1.9E-05 36.8 8.5 59 611-669 10-74 (104)
232 4ady_A RPN2, 26S proteasome re 92.4 17 0.00057 40.9 35.6 25 415-439 233-257 (963)
233 4h7y_A Dual specificity protei 91.8 0.86 3E-05 37.7 8.4 102 677-779 14-129 (161)
234 3u64_A Protein TP_0956; tetrat 91.6 1.3 4.6E-05 41.6 10.7 122 114-239 139-281 (301)
235 1nzn_A CGI-135 protein, fissio 91.5 1.7 5.9E-05 34.9 9.8 86 623-709 18-107 (126)
236 1nzn_A CGI-135 protein, fissio 91.0 1.6 5.5E-05 35.1 9.2 88 427-517 16-107 (126)
237 4b4t_P 26S proteasome regulato 90.0 17 0.00057 37.4 18.5 94 204-297 141-244 (445)
238 4h7y_A Dual specificity protei 89.9 4.3 0.00015 33.7 10.8 54 180-233 74-127 (161)
239 4b4t_P 26S proteasome regulato 89.3 21 0.00073 36.6 23.7 94 311-404 141-245 (445)
240 4gns_B Protein CSD3, chitin bi 88.7 2 6.8E-05 47.1 10.7 53 717-770 344-397 (754)
241 4ady_A RPN2, 26S proteasome re 88.6 36 0.0012 38.3 47.6 179 611-794 529-721 (963)
242 4gns_B Protein CSD3, chitin bi 88.5 4.2 0.00014 44.6 13.1 51 457-508 347-397 (754)
243 2ff4_A Probable regulatory pro 86.9 2.1 7.1E-05 43.3 9.1 76 713-789 174-255 (388)
244 2wpv_A GET4, UPF0363 protein Y 86.6 23 0.0008 33.9 20.8 111 274-400 36-157 (312)
245 3o48_A Mitochondria fission 1 86.5 2.3 7.8E-05 34.4 7.1 87 691-780 22-112 (134)
246 1v54_E Cytochrome C oxidase po 86.2 5.7 0.0002 30.1 8.5 61 113-174 27-87 (109)
247 1v54_E Cytochrome C oxidase po 85.7 4.9 0.00017 30.5 7.9 63 147-209 26-88 (109)
248 2ff4_A Probable regulatory pro 84.1 3.9 0.00013 41.3 9.5 69 450-519 174-247 (388)
249 4fhn_B Nucleoporin NUP120; pro 83.6 42 0.0014 39.5 19.3 86 343-430 900-989 (1139)
250 3lpz_A GET4 (YOR164C homolog); 83.0 35 0.0012 33.0 22.6 111 274-400 38-159 (336)
251 1qsa_A Protein (soluble lytic 81.3 63 0.0021 34.7 34.3 98 81-184 57-154 (618)
252 2y69_E Cytochrome C oxidase su 79.2 13 0.00044 30.0 8.5 80 94-174 49-130 (152)
253 4fhn_B Nucleoporin NUP120; pro 78.9 46 0.0016 39.2 17.4 165 346-532 816-986 (1139)
254 1zbp_A Hypothetical protein VP 78.7 5.9 0.0002 36.7 7.6 54 686-739 7-60 (273)
255 3txn_A 26S proteasome regulato 77.7 60 0.0021 32.4 22.8 98 557-668 104-208 (394)
256 3txn_A 26S proteasome regulato 77.4 61 0.0021 32.3 22.5 232 487-775 104-345 (394)
257 4b4t_R RPN7, 26S proteasome re 74.3 15 0.00051 37.6 10.3 92 712-803 133-232 (429)
258 2y69_E Cytochrome C oxidase su 74.2 31 0.0011 27.9 9.4 59 395-454 71-129 (152)
259 1zbp_A Hypothetical protein VP 72.4 24 0.00082 32.7 9.8 52 458-510 8-59 (273)
260 3ffl_A Anaphase-promoting comp 72.0 33 0.0011 29.0 9.8 25 275-299 126-150 (167)
261 1y8m_A FIS1; mitochondria, unk 70.1 44 0.0015 27.4 12.9 73 638-710 36-111 (144)
262 2p58_C Putative type III secre 69.5 34 0.0012 25.9 8.1 51 316-372 49-99 (116)
263 3o48_A Mitochondria fission 1 68.5 46 0.0016 26.9 11.3 73 444-518 37-112 (134)
264 1wdy_A 2-5A-dependent ribonucl 67.1 37 0.0013 31.8 11.0 49 318-366 190-240 (285)
265 3lpz_A GET4 (YOR164C homolog); 66.6 96 0.0033 30.0 21.5 167 380-580 38-215 (336)
266 2jul_A Calsenilin; EF-hand, ca 66.1 41 0.0014 31.2 10.7 24 237-260 231-254 (256)
267 2uwj_G Type III export protein 64.6 32 0.0011 25.9 7.1 51 316-372 48-98 (115)
268 3ffl_A Anaphase-promoting comp 63.0 33 0.0011 29.0 8.1 120 203-336 23-151 (167)
269 1y8m_A FIS1; mitochondria, unk 60.3 70 0.0024 26.3 13.3 72 444-517 36-110 (144)
270 3eiq_C Programmed cell death p 60.3 1.1E+02 0.0036 30.1 12.4 63 680-742 221-285 (358)
271 4b4t_R RPN7, 26S proteasome re 60.2 43 0.0015 34.1 10.3 62 237-298 133-195 (429)
272 3esl_A Checkpoint serine/threo 58.2 45 0.0016 29.3 8.3 52 182-233 95-148 (202)
273 3eiq_C Programmed cell death p 58.0 98 0.0034 30.3 11.7 71 450-521 220-292 (358)
274 3esl_A Checkpoint serine/threo 56.1 60 0.0021 28.5 8.8 60 565-642 92-151 (202)
275 1n11_A Ankyrin; clathrin, BAND 54.6 1.4E+02 0.0048 30.1 13.4 15 245-259 120-134 (437)
276 2qx5_A Nucleoporin NIC96; mRNA 53.3 2.4E+02 0.0083 30.3 18.3 16 652-667 549-564 (661)
277 3mv2_A Coatomer subunit alpha; 52.9 1.6E+02 0.0055 28.1 12.8 51 359-409 187-239 (325)
278 1k1a_A B-cell lymphoma 3-encod 50.7 1.1E+02 0.0037 27.5 10.8 191 559-779 13-211 (241)
279 1wdy_A 2-5A-dependent ribonucl 50.3 1.5E+02 0.0051 27.3 12.1 83 314-400 152-239 (285)
280 1n11_A Ankyrin; clathrin, BAND 49.8 1.3E+02 0.0044 30.5 12.1 172 613-803 216-397 (437)
281 4a1g_A Mitotic checkpoint seri 49.1 77 0.0026 26.4 8.0 49 185-233 84-134 (152)
282 4g8k_A 2-5A-dependent ribonucl 47.3 2E+02 0.0068 27.6 14.2 22 100-121 26-47 (337)
283 1k1a_A B-cell lymphoma 3-encod 47.2 1.5E+02 0.0052 26.5 11.2 19 211-229 17-35 (241)
284 2uwj_G Type III export protein 46.9 92 0.0031 23.6 7.2 12 388-399 50-61 (115)
285 2p58_C Putative type III secre 45.8 96 0.0033 23.5 7.8 13 353-365 51-63 (116)
286 2cos_A Serine/threonine protei 44.7 15 0.00051 23.8 2.3 35 766-805 12-48 (54)
287 2wvi_A Mitotic checkpoint seri 44.5 49 0.0017 28.0 6.2 56 569-642 77-132 (164)
288 2wvi_A Mitotic checkpoint seri 43.4 1.1E+02 0.0038 25.8 8.2 51 184-234 78-130 (164)
289 4b4t_S RPN3, 26S proteasome re 42.3 1.4E+02 0.0049 30.8 10.4 60 167-228 232-298 (523)
290 3hra_A Ankyrin repeat family p 41.6 1.2E+02 0.004 26.3 9.1 14 246-259 80-93 (201)
291 3t8k_A Uncharacterized protein 41.3 78 0.0027 27.4 7.6 64 313-376 41-108 (186)
292 2wpv_A GET4, UPF0363 protein Y 41.3 2.4E+02 0.0083 26.9 20.9 26 270-295 133-158 (312)
293 2zu6_B Programmed cell death p 40.3 95 0.0032 29.7 8.3 24 556-579 7-30 (307)
294 4b4t_S RPN3, 26S proteasome re 38.7 2.2E+02 0.0077 29.4 11.2 68 552-635 231-299 (523)
295 3eu9_A Huntingtin-interacting 37.1 1E+02 0.0035 27.6 8.2 10 281-290 49-58 (240)
296 2d2s_A Exocyst complex compone 35.8 1.5E+02 0.0052 26.9 8.6 28 375-402 89-116 (235)
297 2fe3_A Peroxide operon regulat 35.2 1E+02 0.0036 25.3 6.9 48 610-657 25-72 (145)
298 3hra_A Ankyrin repeat family p 35.2 1.3E+02 0.0044 26.0 8.3 14 107-120 13-26 (201)
299 3eu9_A Huntingtin-interacting 35.0 1.1E+02 0.0036 27.5 7.9 8 317-324 184-191 (240)
300 2nsz_A Programmed cell death p 34.2 1.8E+02 0.0062 23.3 9.7 23 645-667 11-33 (129)
301 2xig_A Ferric uptake regulatio 33.7 1E+02 0.0035 25.6 6.6 48 610-657 30-77 (150)
302 2ion_A PDCD4, programmed cell 33.6 2.1E+02 0.0071 23.8 8.5 63 346-409 13-77 (152)
303 4aez_C MAD3, mitotic spindle c 32.8 2.7E+02 0.0092 24.9 11.0 55 569-641 131-185 (223)
304 2d2s_A Exocyst complex compone 31.6 2.2E+02 0.0074 25.9 8.9 25 101-125 23-47 (235)
305 2fe3_A Peroxide operon regulat 31.6 1.1E+02 0.0039 25.1 6.6 26 205-230 26-51 (145)
306 1mzb_A Ferric uptake regulatio 31.3 1.1E+02 0.0036 24.9 6.3 47 611-657 22-69 (136)
307 3kea_A K1L; tropism, ANK repea 30.2 3.3E+02 0.011 25.3 10.7 10 282-291 169-178 (285)
308 2w57_A Ferric uptake regulatio 30.2 1.2E+02 0.0039 25.3 6.4 47 611-657 21-68 (150)
309 2ion_A PDCD4, programmed cell 29.7 2.4E+02 0.0083 23.4 9.7 23 645-667 13-35 (152)
310 2bwb_A Ubiquitin-like protein 29.5 95 0.0032 19.5 4.3 34 766-802 10-43 (46)
311 3ltm_A Alpha-REP4; protein eng 29.2 2.9E+02 0.0098 24.1 17.7 16 341-356 125-140 (211)
312 1ug3_A EIF4GI, eukaryotic prot 29.2 2E+02 0.0069 27.9 8.9 25 134-158 14-38 (339)
313 2fu4_A Ferric uptake regulatio 29.1 1.4E+02 0.0048 21.4 6.1 46 611-656 21-67 (83)
314 3eyy_A Putative iron uptake re 29.1 94 0.0032 25.6 5.7 45 611-656 23-67 (145)
315 2ijq_A Hypothetical protein; s 29.1 2.6E+02 0.0088 23.5 8.3 59 99-158 36-102 (161)
316 4a1g_A Mitotic checkpoint seri 28.8 2.5E+02 0.0086 23.3 11.5 56 569-642 82-137 (152)
317 3ygs_P Procaspase 9; apoptosis 28.7 1.3E+02 0.0046 22.6 5.9 38 214-255 51-88 (97)
318 2znd_A Programmed cell death p 28.6 2.6E+02 0.0087 23.3 10.1 146 22-195 5-152 (172)
319 3b7b_A Euchromatic histone-lys 28.1 2E+02 0.0067 25.7 8.5 14 425-438 220-233 (237)
320 1bd8_A P19INK4D CDK4/6 inhibit 27.4 1.8E+02 0.006 23.7 7.4 72 731-805 82-156 (156)
321 4aez_C MAD3, mitotic spindle c 27.3 1.4E+02 0.0047 26.8 6.5 51 183-233 131-183 (223)
322 2nsz_A Programmed cell death p 27.3 2.4E+02 0.0082 22.6 9.8 63 346-409 11-75 (129)
323 2rfa_A Transient receptor pote 26.8 2.9E+02 0.0099 24.4 9.4 20 388-407 162-181 (232)
324 3ljn_A Hypothetical protein; a 26.5 1.7E+02 0.0057 28.6 8.2 53 747-803 211-265 (364)
325 3kae_A CDC27, possible protein 26.3 1.8E+02 0.0062 24.7 6.5 46 758-803 76-138 (242)
326 1qsa_A Protein (soluble lytic 26.2 6.2E+02 0.021 27.0 37.9 99 111-216 54-152 (618)
327 1mzb_A Ferric uptake regulatio 26.1 1.2E+02 0.0042 24.5 5.8 46 202-247 19-65 (136)
328 1s6c_A KV4 potassium channel-i 25.7 3E+02 0.01 23.1 13.4 66 93-158 35-102 (183)
329 2ijq_A Hypothetical protein; s 24.7 2.4E+02 0.0083 23.7 7.2 60 134-194 36-103 (161)
330 3ltj_A Alpharep-4; protein eng 24.7 3.3E+02 0.011 23.3 18.7 17 341-357 89-105 (201)
331 3eyy_A Putative iron uptake re 24.6 1.1E+02 0.0038 25.2 5.3 19 217-235 34-52 (145)
332 3jxi_A Vanilloid receptor-rela 23.8 1.7E+02 0.006 26.6 7.3 186 613-804 9-247 (260)
333 2w57_A Ferric uptake regulatio 23.3 1.4E+02 0.0047 24.8 5.6 48 202-249 18-66 (150)
334 2b7e_A PRE-mRNA processing pro 22.7 91 0.0031 20.9 3.3 29 148-176 3-31 (59)
335 3ltm_A Alpha-REP4; protein eng 22.5 3.8E+02 0.013 23.2 18.3 80 340-427 93-172 (211)
336 2dah_A Ubiquilin-3; UBA domain 22.4 1.2E+02 0.0042 19.8 4.0 11 792-802 35-45 (54)
337 4ets_A Ferric uptake regulatio 22.3 1.7E+02 0.006 24.6 6.1 46 611-656 37-84 (162)
338 2xig_A Ferric uptake regulatio 22.2 3.3E+02 0.011 22.4 8.4 41 457-497 36-76 (150)
339 2b7e_A PRE-mRNA processing pro 21.5 1.3E+02 0.0043 20.2 3.8 29 727-755 3-31 (59)
340 3ltj_A Alpharep-4; protein eng 21.4 3.9E+02 0.013 22.9 18.9 91 305-404 88-178 (201)
341 1ug3_A EIF4GI, eukaryotic prot 21.4 2E+02 0.0068 27.9 7.2 10 748-757 275-284 (339)
342 2dna_A Unnamed protein product 21.4 1.2E+02 0.0042 20.9 3.9 11 792-802 45-55 (67)
343 2p1h_A APAF-1, apoptotic prote 21.3 2.1E+02 0.0073 21.1 5.9 36 213-252 49-84 (94)
344 2keb_A DNA polymerase subunit 20.9 2.7E+02 0.0093 20.9 6.4 29 361-389 28-56 (101)
345 1wr1_B Ubiquitin-like protein 20.8 1.4E+02 0.0047 20.0 4.0 33 767-802 21-53 (58)
346 4fke_A Aminopeptidase N; zinc 20.5 9.5E+02 0.033 27.1 16.8 165 275-442 690-861 (909)
347 3bu8_A Telomeric repeat-bindin 20.5 4.4E+02 0.015 23.3 8.0 69 216-287 88-163 (235)
348 3mwm_A ZUR, putative metal upt 20.4 99 0.0034 25.3 4.1 48 610-657 17-64 (139)
349 2fu4_A Ferric uptake regulatio 20.4 2.4E+02 0.0081 20.1 7.3 32 429-460 34-65 (83)
350 2jy5_A Ubiquilin-1; UBA, alter 20.4 1.8E+02 0.0063 18.7 4.6 33 767-802 16-48 (52)
351 3kae_A CDC27, possible protein 20.3 1.4E+02 0.0047 25.4 4.7 71 491-579 71-141 (242)
352 4ets_A Ferric uptake regulatio 20.2 1.5E+02 0.0053 24.9 5.4 28 202-229 34-61 (162)
353 3twr_A Tankyrase-2; ankyrin re 20.2 3.3E+02 0.011 22.3 7.8 13 282-294 16-28 (165)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-38 Score=351.86 Aligned_cols=521 Identities=12% Similarity=-0.008 Sum_probs=354.6
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
.+.+.+..+...+..+ ..++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 3444444444444433 2357777888888888888888888888888754 567777777888888888888888
Q ss_pred HHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 047492 187 VVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 266 (806)
.+|+.+... .++..+++.++.+|.+.|++++|.++|+++..... . ..++.+. .....+
T Consensus 138 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-----~~~~~~~------------~~~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK----D-----EKNANKL------------LMQDGG 195 (597)
T ss_dssp HHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------------------CCCSS
T ss_pred HHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc----c-----ccccccc------------cccccc
Confidence 887776533 34555777777777777777777777764221110 0 0000000 000114
Q ss_pred CCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHH--HHHH-HHHHHhCCCCCCh
Q 047492 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLME--VFDL-FMDMKEGQISPDG 342 (806)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~--a~~~-~~~m~~~g~~~~~ 342 (806)
..++..+|+.++.+|.+.|++++|++.|+++.+. .|+ ...+..+...+...+..+. +..+ +..+...+..++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 4556677777888888888888888888777652 232 2333333333322222211 1112 4445554444556
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADAL 422 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 422 (806)
.+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 66777788888889999999999888764 578889999999999999999999999998876543 677888889999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 423 CRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.+.|++++|.++++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999888654 567788888999999999999999999988876554 7788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCC
Q 047492 503 RLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSG 582 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 582 (806)
++|+++.+. .| .+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~--~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 470 (597)
T 2xpi_A 428 SAYTTAARL--FQ----------------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL- 470 (597)
T ss_dssp HHHHHHHHT--TT----------------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHh--Cc----------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999988763 22 25667888888888889999999999998854
Q ss_pred CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCC
Q 047492 583 LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN----GMYPS--MECYEELIKLLCSTKN 656 (806)
Q Consensus 583 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~ 656 (806)
.|+.. .+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+
T Consensus 471 -~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 471 -FQYDP------------------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp -CCCCH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred -CCCCh------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 23322 24888999999999999999999988875 66777 6788888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 657 YDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 657 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
+++|.+.++++.+.+ +.+..++..+...+.+.|+.++|.+.++++....|.+...+..+..+|
T Consensus 532 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999988887664 223444444444444445554444444444444444444444444433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-37 Score=345.52 Aligned_cols=525 Identities=12% Similarity=-0.017 Sum_probs=380.7
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHH
Q 047492 141 YALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAV 220 (806)
Q Consensus 141 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 220 (806)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++.... |+..++..++.+|.+.|++++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCcHHHHH
Confidence 556677777777776654 3477888999999999999999999988887544 35577788888888888888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 047492 221 EYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSL 300 (806)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 300 (806)
++|+.+... +++..+++.++.+|.+.|++++|.++|+++... . .+ ..++.+. ....
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~--------~~~~~~~------------~~~~ 193 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-R-KD--------EKNANKL------------LMQD 193 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-C-------------------------------CCC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-c-cc--------ccccccc------------cccc
Confidence 888887543 467778888888888888888888888753322 1 00 0011111 1112
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHH--HHHH-HHHHHhCCCCCCH
Q 047492 301 EGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDV--AIEL-YKSRSEFGLSPNG 377 (806)
Q Consensus 301 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~--a~~~-~~~~~~~~~~~~~ 377 (806)
.+..++..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+. +..+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 45566788999999999999999999999999988542 234455555444433322222 1122 4455554444556
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047492 378 IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISAL 457 (806)
Q Consensus 378 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 457 (806)
.+|+.++..|.+.|++++|.++|+++.+. .++..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 67788888999999999999999998865 4789999999999999999999999999998876 45777899999999
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHH
Q 047492 458 CKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQF 537 (806)
Q Consensus 458 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 537 (806)
.+.|++++|..+++.+.+..+. +..+|+.++..|.+.|++++|.++|+++.+. .|
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---------------------- 404 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP---------------------- 404 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------------------
T ss_pred HHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC----------------------
Confidence 9999999999999999876544 7888999999999999999999999998762 22
Q ss_pred HHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHH
Q 047492 538 LQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLC 617 (806)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 617 (806)
.+..+|+.++.+|.+.|++++|.++|+++.+.+ |+.. .+|..++.+|.
T Consensus 405 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~------------------~~~~~l~~~~~ 452 (597)
T 2xpi_A 405 ------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTH------------------LPYLFLGMQHM 452 (597)
T ss_dssp ------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCS------------------HHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch------------------HHHHHHHHHHH
Confidence 256678888899999999999999999998653 3222 24889999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCchhHHHHHHHhhccccHH
Q 047492 618 KAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGH----GRQVTSFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 618 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 693 (806)
+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+. +..|+.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~----------------- 514 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP----------------- 514 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-----------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-----------------
Confidence 9999999999999998753 336888999999999999999999999988764 222220
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
...++..++.+|.+.|++++|++.++++.+.+ +.+..+|..+..+|.. |++++|.+.|+++.+
T Consensus 515 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 515 ---------------WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp ---------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 14566777777777788888888888877763 5577788888888888 888888888888876
Q ss_pred cCCCCChhhHHHHHhhhh
Q 047492 773 KGYEPDQWTFDILKCGLY 790 (806)
Q Consensus 773 ~g~~p~~~~~~~l~~~~~ 790 (806)
... -+...+..+..+|.
T Consensus 579 ~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 579 ISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HCT-TCHHHHHHHHHTTC
T ss_pred cCC-CChHHHHHHHHHHh
Confidence 532 24455555555543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.2e-28 Score=261.60 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=121.9
Q ss_pred HHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------hhHH
Q 047492 327 FDLFMDMKEGQISPDG-VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS---------THEA 396 (806)
Q Consensus 327 ~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a 396 (806)
..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344444444443322 23555556666666666666666666655666666666666665554433 4556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 047492 397 YEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 476 (806)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047492 477 NKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCN 529 (806)
Q Consensus 477 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (806)
|+.||..+|+.||.+|++.|++++|.++|++|++.|..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1e-28 Score=262.29 Aligned_cols=186 Identities=12% Similarity=0.199 Sum_probs=115.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC---------hHHHHHHHHHHHhCCCCCCHHH
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGM---------VDVAIELYKSRSEFGLSPNGIV 379 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 379 (806)
.++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555556666666666666666666666666666666666666554433 4556666666666666666666
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK 494 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 494 (806)
.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666665554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.8e-24 Score=223.21 Aligned_cols=363 Identities=15% Similarity=0.067 Sum_probs=220.7
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 047492 177 VEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
.+.|++++|...++.+.+..+.+...+..+...+...|++++|...++...+..+ .+..+|..+...|.+.|++++|++
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444444444444443444444444444455555555555544444332 334455555555555555555555
Q ss_pred HHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047492 257 LLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKE 335 (806)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (806)
.|+++... .+.+...|..+..++.+.|++++|.+.|+++... .|+ ...+..+...+...|++++|.+.|+++.+
T Consensus 89 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 89 HYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555432 1222334555555555555555555555555431 233 33444455566666777777777766665
Q ss_pred CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 047492 336 GQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTL 415 (806)
Q Consensus 336 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 415 (806)
.. +.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.... +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHH
Confidence 42 1245666667777777777777777777766643 234556667777777777777777777776654322 45667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 047492 416 SILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS 495 (806)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 495 (806)
..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|++++|...++++.+..+. +..+|..+...+.+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHc
Confidence 777777777777777777777777654 345567777777777778888888777777766543 677777777888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHH
Q 047492 496 NRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVY 575 (806)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
|++++|...++++.+. .| .+..++..+...|.+.|++++|...|
T Consensus 319 g~~~~A~~~~~~al~~--~p----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEV--FP----------------------------------EFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CT----------------------------------TCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CC----------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888777652 22 23455666777777778888888888
Q ss_pred HHHHHCCCccCcc
Q 047492 576 ELMQRSGLVPQLG 588 (806)
Q Consensus 576 ~~m~~~~~~p~~~ 588 (806)
+++.+ ..|+..
T Consensus 363 ~~a~~--~~p~~~ 373 (388)
T 1w3b_A 363 KEAIR--ISPTFA 373 (388)
T ss_dssp HHHHT--TCTTCH
T ss_pred HHHHh--hCCCCH
Confidence 88774 455543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.3e-24 Score=223.51 Aligned_cols=359 Identities=14% Similarity=0.016 Sum_probs=173.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 047492 316 RLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHE 395 (806)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 395 (806)
.+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3444555555555555554432 1123333444444555555555555555544432 3344555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 396 AYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
|.+.|+++.+... .+..+|..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555554321 133345555555555555555555555555543 22333444555555555666666665555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhH
Q 047492 476 MNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIY 555 (806)
Q Consensus 476 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (806)
..+. +..+|..+...+...|++++|...|+++.+. .|+ +...|
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~ 206 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN----------------------------------FLDAY 206 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------------cHHHH
Confidence 4333 4555555556666666666666666555541 121 23334
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 556 NFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
..+...+...|++++|...|++..+. .|+... ++..+...|...|++++|...|+++.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSL--SPNHAV------------------VHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555555555555555532 233221 2555555555566666666666555552
Q ss_pred CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHH
Q 047492 636 GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 636 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
.| +..+|..+..++.+.|++++|.+.++++.+.. +.+...++.+...+.+.|+.++|...++++....|.+..++.
T Consensus 267 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 267 --QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp --CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 22 34445555555555555555555555554432 112223333333333333333333333333333333333344
Q ss_pred HHHHhhhccccchhhHHHHHHHHH
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIE 738 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~ 738 (806)
.++.+|.+.|++++|+..++++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.4e-21 Score=210.78 Aligned_cols=451 Identities=12% Similarity=-0.048 Sum_probs=318.8
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+......+.+.|++++|+..|+++.+. .|+..+|..+..++...|++++|...++.+.+.++.+..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 455666777888889999999999998877 378888888888899999999999999998888877778888889999
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHH---cCCH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVR---AGRL 287 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~ 287 (806)
...|++++|...|+.+.+.+. ++......++..+.+......+.+.+..+... ...|+...+..-...... ....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999998888765 34444445555554444444444444333222 111111111110000000 1111
Q ss_pred HHHHHHHHhhhhcCCC-----CCCcccHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CChhhHH
Q 047492 288 DLALEFLKSKNSLEGY-----VPEVFRFNFLVSRLLK---ENRLMEVFDLFMDMKE-----GQIS--------PDGVTMN 346 (806)
Q Consensus 288 ~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------~~~~~~~ 346 (806)
..+...+......... ..+...+......+.. .|++++|..+|+++.+ .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111110000 1112333333333443 8999999999999887 3111 2355777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG 426 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 426 (806)
.+...+...|++++|...|+.+.+.. |+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88889999999999999999988754 44888899999999999999999999999876533 6778889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047492 427 KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLV 506 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 506 (806)
++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...|..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998876 456778889999999999999999999999887654 67789999999999999999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhc---CCChHHHHHHHHHHHHCCC
Q 047492 507 EMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH---VKRPDLARAVYELMQRSGL 583 (806)
Q Consensus 507 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~ 583 (806)
++.+. .|+.. ........+..+...+.. .|++++|...|+++.+.
T Consensus 397 ~a~~~--~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-- 444 (514)
T 2gw1_A 397 LAIEL--ENKLD----------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-- 444 (514)
T ss_dssp HHHHH--HHTSS----------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--
T ss_pred HHHHh--hhccc----------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--
Confidence 88762 11100 000113467888888888 89999999999998864
Q ss_pred ccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 584 VPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 584 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
.|+... ++..+...|.+.|++++|...|++..+ +.|+..
T Consensus 445 ~~~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 445 DPRSEQ------------------AKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred CcccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 344332 477888999999999999999999988 455543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.1e-20 Score=203.16 Aligned_cols=256 Identities=11% Similarity=-0.031 Sum_probs=141.0
Q ss_pred CCChhHHHHHHHHHHh-----CCCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047492 390 DGSTHEAYEVLKNSID-----HGLFP--------GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISA 456 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 456 (806)
.|++++|..+|+++.+ ....| +..++..+...+...|++++|...++.+.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 6677777777777665 21111 2334555556666666666666666666655422 5556666666
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHH
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQ 536 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 536 (806)
+...|++++|...++.+.+..+. +...|..+...+...|++++|...+++..+. .|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--------------------- 335 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DP--------------------- 335 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CS---------------------
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Ch---------------------
Confidence 66666666666666666554433 4555666666666666666666666665542 11
Q ss_pred HHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH
Q 047492 537 FLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL 616 (806)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 616 (806)
.+...+..+...|...|++++|...|+++.+. .|+... +|..+...|
T Consensus 336 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~~~la~~~ 382 (514)
T 2gw1_A 336 -------------ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPE------------------VPNFFAEIL 382 (514)
T ss_dssp -------------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSH------------------HHHHHHHHH
T ss_pred -------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHH------------------HHHHHHHHH
Confidence 12334555555556666666666666665532 222111 255555666
Q ss_pred HhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc
Q 047492 617 CKAMKANLAWGFMREMRHNGMY-PS----MECYEELIKLLCS---TKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK 688 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 688 (806)
...|++++|...++++.+.... ++ ...+..+..++.. .|++++|...++.+.+.
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------------------ 444 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------------------ 444 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------------------
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------------------
Confidence 6666666666666655542100 11 2244555555555 55555555555555443
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.|.+..++..++..|...|++++|...++++.+.
T Consensus 445 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 445 -----------------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344444555556666666666666666666664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.2e-19 Score=194.58 Aligned_cols=338 Identities=10% Similarity=-0.023 Sum_probs=226.4
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345666777777777777777777777776642 2356677777777777777777777777776643 33466677777
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGK----KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA 460 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 460 (806)
..|.+.|++++|.+.|+++.+.. |+. ..+..+...+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 77777777777777777776643 332 344444333111 0122234456667
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHH
Q 047492 461 NKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQL 540 (806)
Q Consensus 461 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 540 (806)
|++++|...++.+.+..+. +...+..+...|.+.|++++|+..|+++.+. .
T Consensus 157 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-------------------------- 207 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL--K-------------------------- 207 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--H--------------------------
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C--------------------------
Confidence 7777777777777665544 6667777777777777777777777777642 1
Q ss_pred HHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC
Q 047492 541 LNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM 620 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 620 (806)
+.++.++..+...|...|++++|...|+++.+. .|+.......+.... ....+..+...|.+.|
T Consensus 208 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 208 --------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK------KLNKLIESAEELIRDG 271 (450)
T ss_dssp --------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH------HHHHHHHHHHHHHHcC
Confidence 224556677777777778888888888777743 454443111100000 0001233478899999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHH
Q 047492 621 KANLAWGFMREMRHNGMYPS-----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEA 695 (806)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 695 (806)
++++|...|+++.+ ..|+ ..+|..+..++.+.|++++|...++.+.+.. +.+...+..+...+...|+.++|
T Consensus 272 ~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 272 RYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp CHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999988 3454 4477888889999999999999999987764 33456777788888888888888
Q ss_pred HHHHHhhhhccCcchhhHHHHH
Q 047492 696 WIRLRGMLINEQSKISLLGQLI 717 (806)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~ 717 (806)
...++++....|.+..++..+.
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHH
Confidence 8888888877777777776666
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.1e-19 Score=195.11 Aligned_cols=315 Identities=14% Similarity=0.051 Sum_probs=214.4
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
+.+...+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+.+.+.++.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4566777777777888888888888888777652 235667777777788888888888888888777766777777888
Q ss_pred HHhhccCCHHHHHHHHHHhHhCCCCCCH---HhHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCcchh
Q 047492 208 KCLCKQKKIDEAVEYFQQLVSGRECVSG---FMIGIV------------VDALCKNSRFEQAGKLLEDFKDRDDVVKLEK 272 (806)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 272 (806)
.+|...|++++|.+.|+.+.+..+ .+. ..+..+ ...+.+.|++++|+..|+.+... .+.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 888888888888888888776543 222 444444 33477778888888888777654 234556
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHH---
Q 047492 273 AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD-GVTMNTV--- 348 (806)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l--- 348 (806)
.+..+...|.+.|++++|++.|+++.... +.+..++..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 67777777778888888888777776421 234566777777777788888888888777754 233 3333333
Q ss_pred ---------HHHHHHcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 047492 349 ---------LCFFCKAGMVDVAIELYKSRSEFGLSPN-----GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKT 414 (806)
Q Consensus 349 ---------l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 414 (806)
...|.+.|++++|...|+.+.+. .|+ ...|..+...+.+.|++++|...++++.+... .+...
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~ 331 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHH
Confidence 56677777777777777777663 233 34566677777777777777777777765432 25667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
+..+..+|...|++++|...++.+.+.. +-+...+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777777777777777776643 22344444443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=3.5e-19 Score=195.95 Aligned_cols=444 Identities=12% Similarity=0.034 Sum_probs=258.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+.+.|++++|+..|+++.... +.++.+|..+..++...|++++|...++++.+..+.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3445555555555555555555555555442 124445555555555555555555555555555544445555555555
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (806)
...|++++|.+.|+ ........ ....+..+...+....|...++.+.... |
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~---~--------------------- 154 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKD---E--------------------- 154 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhC---c---------------------
Confidence 55555555555554 22211111 1111223333333444555554443220 0
Q ss_pred HHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHH--------HcCChHHH
Q 047492 291 LEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGV-TMNTVLCFFC--------KAGMVDVA 361 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~--------~~g~~~~a 361 (806)
+..+........+..+....+.+.+...+..... ..+... ....+...+. ..|++++|
T Consensus 155 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 155 -----------GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp ---------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred -----------cccccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0001111112223333334444333333222111 011111 1111111111 12456677
Q ss_pred HHHHHHHHhCCCCCC--------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 362 IELYKSRSEFGLSPN--------GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKD 433 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (806)
..+|+.+.+.. |+ ..++..+...+...|++++|.+.++++.+. .|+...+..+...+...|++++|..
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHH
Confidence 77777766532 33 224555566677777888888888877765 3456677777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047492 434 LVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGH 513 (806)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 513 (806)
.++.+.+.. +.+..++..+...+...|++++|...++...+..+. +...|..+...+...|++++|...++++.+.
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 373 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK-- 373 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888777765 456677888888888888888888888888776654 5677888888888889999998888888763
Q ss_pred CCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHH
Q 047492 514 KPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILM 593 (806)
Q Consensus 514 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 593 (806)
.| .++..+..+...+...|++++|...|+++.+.. |+....
T Consensus 374 ~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~--- 414 (537)
T 3fp2_A 374 FP----------------------------------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKI--- 414 (537)
T ss_dssp CT----------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSC---
T ss_pred CC----------------------------------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccchhh---
Confidence 22 245567777888888899999999998877532 221110
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 594 LQSYLKRKNGIPRKLYNTLIVGLCKA----------MKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGV 663 (806)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 663 (806)
......+..+...+... |++++|...|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 415 ---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 415 ---------HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp ---------SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 00001133445667777 99999999999998842 33577888999999999999999999
Q ss_pred HHHHHhCCCCC
Q 047492 664 MNHLEGHGRQV 674 (806)
Q Consensus 664 ~~~~~~~~~~~ 674 (806)
+++..+.....
T Consensus 485 ~~~al~~~~~~ 495 (537)
T 3fp2_A 485 FEDSAILARTM 495 (537)
T ss_dssp HHHHHHHC--C
T ss_pred HHHHHHhCCCc
Confidence 99998876443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=3e-19 Score=196.48 Aligned_cols=448 Identities=10% Similarity=-0.018 Sum_probs=315.5
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 174 (806)
....+..+...+.+.|+++.|...++..... .+.+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4577888889999999999999999999885 35688999999999999999999999999998773 235678899999
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCC--CCHHhHHHHHHHHHhcCCHH
Q 047492 175 ALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC--VSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 252 (806)
++...|++++|...|+ .....+... ...+..+...+....|...++.+....+. +........+..+....+.+
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFD---GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999997 433333211 12233445556668899999988764211 11111233344455555555
Q ss_pred HHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 253 QAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMD 332 (806)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 332 (806)
.+...+...... .+. +..+..++... .. .+. -......|++++|..++++
T Consensus 178 ~~~~~~~~~~~~---~~~---~~~~~~~l~~~-------------~~-----~~~------~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 178 LEVSSVNTSSNY---DTA---YALLSDALQRL-------------YS-----ATD------EGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp HHHHTSCCCCSS---CSS---HHHHHHHHHHH-------------HT-----CSH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc---ccH---HHHHHHHHHHH-------------HH-----hhh------hhhHHHHHHHHHHHHHHHH
Confidence 554433322211 111 11111111100 00 000 0011123467778888888
Q ss_pred HHhCCCCCC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 333 MKEGQISPD--------GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 333 m~~~g~~~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+.+.. |+ ..++..+...+...|++++|...|+...+. .|+...+..+...+...|++++|.+.++++.
T Consensus 228 ~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 228 LLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 77643 33 224566667788889999999999998875 4667888888899999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH
Q 047492 405 DHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENT 484 (806)
Q Consensus 405 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 484 (806)
+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 76533 67788899999999999999999999998875 445678889999999999999999999999887655 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhc
Q 047492 485 YIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGH 564 (806)
Q Consensus 485 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 564 (806)
+..+...+...|++++|...|+++.+.. |+.. ........+......+..
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~----------------------------~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQE----------------------------KIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCS----------------------------SCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccch----------------------------hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987631 1100 001111223334455555
Q ss_pred C----------CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 565 V----------KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 565 ~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
. |++++|...|++..+. .|+... +|..+...|.+.|++++|...|++..+
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQ------------------AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5 9999999999999864 354432 488999999999999999999999998
Q ss_pred C
Q 047492 635 N 635 (806)
Q Consensus 635 ~ 635 (806)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=4.5e-15 Score=166.30 Aligned_cols=614 Identities=11% Similarity=0.088 Sum_probs=395.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHH-----------HHhHhc--cCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCC
Q 047492 96 RATFHAIFKLLHCAKLTPLMVDFL-----------ENYKKD--RYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGM 162 (806)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~l-----------~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 162 (806)
...|....+-|.+..+.+.-..++ +..... .-..++.-....+.+|...|.+.+|++++++....+-
T Consensus 937 n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s 1016 (1630)
T 1xi4_A 937 NSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1016 (1630)
T ss_pred chhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 345555666666666554433333 221111 1134455557788999999999999999999984321
Q ss_pred --CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHH
Q 047492 163 --DLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGI 240 (806)
Q Consensus 163 --~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (806)
.-+....+.++.+..+. +..+..+........ ...-+...+...|.+++|..+|++.. ......+.
T Consensus 1017 ~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~V 1084 (1630)
T 1xi4_A 1017 VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQV 1084 (1630)
T ss_pred cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHH
Confidence 12345566666666666 556666666555422 24447788889999999999999963 11222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhc
Q 047492 241 VVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKE 320 (806)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 320 (806)
++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.
T Consensus 1085 Li---e~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1085 LI---EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HH---HHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHc
Confidence 33 27789999999998763 2578999999999999999999999764 4677888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 321 NRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 321 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
|++++|.+.|....+.. ++....+.+..+|++.+++++..... + .++...|..+...|...|++++|..+|
T Consensus 1148 GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y 1218 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLY 1218 (1630)
T ss_pred CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999877754 44444556999999999988644443 2 367777888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC
Q 047492 401 KNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA 480 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 480 (806)
... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..
T Consensus 1219 ~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv 1278 (1630)
T 1xi4_A 1219 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 1278 (1630)
T ss_pred Hhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhc
Confidence 984 48999999999999999999999875 4568999999999999999999886653 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCC--------CC
Q 047492 481 SENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPT-RALHRAVIRCLCNMETPAKQFLQLLNMQLSHQE--------TN 551 (806)
Q Consensus 481 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 551 (806)
++..+..++..|.+.|.+++|+.+++.... +.+. ...|.-+...+++-.. +.+.+.++....... .+
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~p--eklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKP--QKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCH--HHHHHHHHHHHHhcccchHhHHHHH
Confidence 667888999999999999999999987764 3333 2334444444444332 222222222221111 35
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
...|.-+.-.|.+.|+++.|....-+-...... ...+..++ ....++..|...+.-|.... .+++.-+..
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~--~~~Fk~~i------~kv~n~elyykai~Fyl~~~--P~~lndLl~ 1424 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK--EGQFKDII------TKVANVELYYRAIQFYLEFK--PLLLNDLLM 1424 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh--hHHHHHHh------cccccHHHHHHHHHHHHhhC--hHHHHHHHH
Confidence 667999999999999999988432111100000 00000000 01123344666666666322 233333322
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhc------
Q 047492 632 MRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLIN------ 705 (806)
Q Consensus 632 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 705 (806)
.....+. +...++.+.+.|++..+...++.+...+ +..+-..+-+.+...+|...-...++....-
T Consensus 1425 ~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La 1496 (1630)
T 1xi4_A 1425 VLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLA 1496 (1630)
T ss_pred HhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHH
Confidence 2221111 2335556667777777777776665332 3334444555555555544333333222110
Q ss_pred ---cCcchhhHHHHH-HhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 706 ---EQSKISLLGQLI-GVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 706 ---~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
...+..-+..+. ..|.+.|+++.|++++++... |--.|.+... |+.+.+.+++.-.... -+..
T Consensus 1497 ~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E 1564 (1630)
T 1xi4_A 1497 QRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASESKDTELAEELLQWFLQE---EKRE 1564 (1630)
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHcCCHHHHHHHHHHHHhc---CChh
Confidence 111111112222 344556888888887765433 5556777777 8888888887777765 3445
Q ss_pred hHHHHHhhhhccCCHHHHHHH
Q 047492 781 TFDILKCGLYNCLRTDEAERR 801 (806)
Q Consensus 781 ~~~~l~~~~~~~g~~~eA~~~ 801 (806)
+|...+..|...-+.+-++++
T Consensus 1565 ~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1565 CFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHHHHHHHHhccCCchHHHHH
Confidence 677777777776666666653
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.5e-14 Score=162.29 Aligned_cols=599 Identities=13% Similarity=0.100 Sum_probs=291.7
Q ss_pred CCHHHHHHHHhcccCCCCchhhhhhhhhhcc-CCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccC--CcchhHH
Q 047492 58 LTESFALQVLNYGKKTKDVLSCLKFFDWAGR-QPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRY--YHQVRFN 134 (806)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 134 (806)
-+++++..||..- +... -++.+|... .-.-..+++.....++.+...|.+..+.++++...-.+. ..+....
T Consensus 951 ~d~~lW~~vl~~~---n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLES---NPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcCC---cHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 3556666666431 1111 245555321 112244555666666666666666666666666653211 1233444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccC
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQK 214 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 214 (806)
+.++....+. +..+..+..++.... + ...+...+...|.+++|..+|++.. ......+.++. ..|
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHh
Confidence 5555444444 334444444444321 1 2234445555666666666666542 11111122221 455
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHH
Q 047492 215 KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFL 294 (806)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (806)
++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+++
T Consensus 1091 nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1091 NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 566666665544 12355666666666666666666666442 23344555666666666666666666
Q ss_pred HhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 047492 295 KSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS 374 (806)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (806)
....+. .++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1158 ~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A 1158 QMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred HHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence 554431 133223334556666666655433222 1 134444555556666666666666666653
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 375 PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
..|..+...|++.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..+...+..++
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 1287 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHH
Confidence 25666666666666666666666554 2445555555566555655555554332 223344455556
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHhHHHHHHH
Q 047492 455 SALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS--NRADIAARLLVEMEENGHKP------TRALHRAVIRC 526 (806)
Q Consensus 455 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~ 526 (806)
..|.+.|.+++|..+++.....+ .-....|+-+...|++. ++..+++++|..-.. +.| +...|..+...
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHH
Confidence 66666666666666665554333 11333444444444442 223333333332211 111 23334444444
Q ss_pred HHccCCcHHHHHHHHHhH-----------hhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHH
Q 047492 527 LCNMETPAKQFLQLLNMQ-----------LSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQ 595 (806)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 595 (806)
|.+.++.+.++..+.+.. .-....|+..|--.+..|... ...++.-+..... |...
T Consensus 1365 Y~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~P~~lndLl~~l~----~rlD------- 1431 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLS----PRLD------- 1431 (1630)
T ss_pred HHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--ChHHHHHHHHHhh----hcCC-------
Confidence 444444443332221110 111234555555555555522 2222222222211 1111
Q ss_pred HHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH------------HHH
Q 047492 596 SYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMV------------VGV 663 (806)
Q Consensus 596 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A------------~~~ 663 (806)
+...+..+.+.|+..-+..++...+..+.. ..-..+.+.|....+++.- ..+
T Consensus 1432 -------------~~R~V~l~~~~~~l~lik~yl~~vq~~n~~---~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~L 1495 (1630)
T 1xi4_A 1432 -------------HTRAVNYFSKVKQLPLVKPYLRSVQNHNNK---SVNESLNNLFITEEDYQALRTSIDAYDNFDNISL 1495 (1630)
T ss_pred -------------hHHHHHHHHHcCChHHhHHHHHHHHHhcch---hhhHHHHHHhcCccchHHHHHHHhhccCcCHHHH
Confidence 344455555555555555555555532211 1112222333333332211 222
Q ss_pred HHHHHhCCCCCCchhHHHHHH-HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC
Q 047492 664 MNHLEGHGRQVTSFIGNTLLL-HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 742 (806)
..++.++. ..-+..+.. .|-++|++..|.+++.+.. .+---|.+.++.|+.+.+.+++.-..+.
T Consensus 1496 a~~lekhe----Ll~frrIAa~ly~~n~~~~~ai~l~k~d~--------l~~dAm~~a~~S~d~e~~e~ll~~F~~~--- 1560 (1630)
T 1xi4_A 1496 AQRLEKHE----LIEFRRIAAYLFKGNNRWKQSVELCKKDS--------LYKDAMQYASESKDTELAEELLQWFLQE--- 1560 (1630)
T ss_pred HHHhhhhh----HHHHHHHHHHHHHhcCcHHHHHHHHHhcc--------CHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 22222221 111122222 3445588888887776653 3344566677888888888888777775
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
.+...|-+.+..|.. -+++.++++
T Consensus 1561 ~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1561 EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred CChhHHHHHHHHHhccCCchHHHHH
Confidence 366778888888877 777776654
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.9e-16 Score=163.93 Aligned_cols=315 Identities=12% Similarity=0.027 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+.+..++..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4455555566666666666666666665441 123445555555555566666666666665555444445555555555
Q ss_pred hccCCHHHHHHHHHHhHhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGREC--VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLD 288 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (806)
...|++++|.+.++...+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCHH
Confidence 5555555555555555543320 01122222210000 001112234445555555
Q ss_pred HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 289 LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
+|++.++++.... +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+..
T Consensus 138 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544321 1233444455555555555555555555555432 224445555555555555555555555555
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHH
Q 047492 369 SEFGLSPNGIVYN------------YLINSLCGDGSTHEAYEVLKNSIDHGLFPGK----KTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 369 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~ 432 (806)
.+.. +.+...+. .+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4422 11122111 1133344455555555555554443211 11 11223334444445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 047492 433 DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRM 476 (806)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 476 (806)
..++...+.. +.+..++..+...+...|++++|...++...+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555444432 223444444444455555555555555444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.9e-16 Score=163.91 Aligned_cols=164 Identities=10% Similarity=0.038 Sum_probs=92.4
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
+..+..+...+...|++++|...++++.+. .|+... +|..+...+...|++++|...|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTE------------------AFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555666666667777777777776643 333322 366666667777777777777776
Q ss_pred HHhCCCCCC-HHHHH------------HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHH
Q 047492 632 MRHNGMYPS-MECYE------------ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIR 698 (806)
Q Consensus 632 m~~~g~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 698 (806)
..+. .|+ ...+. .+...+.+.|++++|...++.+.+..
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 264 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--------------------------- 264 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------
Confidence 6653 222 22221 11334555555555555555555443
Q ss_pred HHhhhhccCcchh----hHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 699 LRGMLINEQSKIS----LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 699 ~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|.+.. .+..+...|...|++++|+..++++.+. .+.+...|..+...|.. |++++|...|++..+.
T Consensus 265 --------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 265 --------PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp --------CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22221 2334555666666666666666666664 23355566666666666 6666666666666644
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=9.3e-15 Score=159.52 Aligned_cols=420 Identities=11% Similarity=0.013 Sum_probs=269.3
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLIN 385 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 385 (806)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++..+. .|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 4566777776 366778888888888877642 335666777777777788888888888887764 366666666664
Q ss_pred HH-HcCCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHH
Q 047492 386 SL-CGDGSTHEAYE----VLKNSID-HGLFP-GKKTLSILADALCR---------DGKFEQMKDLVIFALERNIKLRDVT 449 (806)
Q Consensus 386 ~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (806)
.. ...|+.++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 32 34566666554 5555543 24333 34555555554443 4667777777777665211111122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCCH---
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM------EENG---HKPTR--- 517 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~---~~p~~--- 517 (806)
|..........|. . +...++. ...+++..|..++.++ .+.. +.|+.
T Consensus 168 ~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2222111100000 0 0001110 1233455555555542 1111 23331
Q ss_pred -----HhHHHHHHHHHcc----CCc---HHHHHHHHHhHhhCCCCChhhHHHHHHhhhc-------CCChH-------HH
Q 047492 518 -----ALHRAVIRCLCNM----ETP---AKQFLQLLNMQLSHQETNFQIYNFFIDGAGH-------VKRPD-------LA 571 (806)
Q Consensus 518 -----~~~~~ll~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a 571 (806)
..+...+...... ++. ...+....+......+.++..|..++..+.+ .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 2233222221111 111 1233344555555567788888888888875 78887 89
Q ss_pred HHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHH
Q 047492 572 RAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-M-ECYEELIK 649 (806)
Q Consensus 572 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~ 649 (806)
..+|++..+. +.|+... .|..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++.
T Consensus 306 ~~~~~~Al~~-~~p~~~~------------------l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 306 ANIYERAIST-LLKKNML------------------LYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHHHHTTT-TCSSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCcccHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHH
Confidence 9999998851 3565443 488888999999999999999999998 4554 2 47888888
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH-hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchh
Q 047492 650 LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH-ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQ 728 (806)
Q Consensus 650 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 728 (806)
.+.+.|++++|.+++++..+.... +...+...... +...|+.++|...++.+....|.+...|..++..+.+.|+.++
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 888999999999999999876432 22222222222 2358999999999999998888899999999999999999999
Q ss_pred hHHHHHHHHHcCC-CCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 729 DIEGLQKMIEQCF-PLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 729 A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|..+|+++...+. .|+ ...|...+..... |+.+.+..+++++.+.
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999998631 222 3378888887777 9999999999998865
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=7.2e-16 Score=157.47 Aligned_cols=271 Identities=11% Similarity=-0.008 Sum_probs=152.4
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
+.+...+..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|..+++++.+..+.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455566666666666777777777777766552 223445555666666677777777777777666666666666666
Q ss_pred HHhhccC-CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCC
Q 047492 208 KCLCKQK-KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGR 286 (806)
Q Consensus 208 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (806)
..+...| ++++|.+.|+...+... .+...|..+...+...|++++|.+.|++.... .+.+...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 6666666 67777777776665543 33455666666666667777776666666553 12223444455555666666
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHHcCCh
Q 047492 287 LDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQ--------ISPDGVTMNTVLCFFCKAGMV 358 (806)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~~~~~~~~~ll~~~~~~g~~ 358 (806)
+++|.+.+++.... .+.+...+..+...+...|++++|...+++..+.. .+.+..++..+..+|...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 66666666655431 12233445555555555556655555555554421 012234445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID 405 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 405 (806)
++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 55555555544432 22334444555555555555555555555443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=7.4e-16 Score=157.35 Aligned_cols=291 Identities=10% Similarity=-0.045 Sum_probs=161.2
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 047492 164 LDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD 243 (806)
Q Consensus 164 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (806)
.+...+..+...+...|++++|..+++++.+..+.+..++..++..+...|++++|..+++++.+... .+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 34555666666666667777777777777666665666666666666666777777777766665433 33455666666
Q ss_pred HHHhcC-CHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCC
Q 047492 244 ALCKNS-RFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENR 322 (806)
Q Consensus 244 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 322 (806)
.+...| ++++|.+.|++.... .+.+...|..+...+...|++++|++.|++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------------ 152 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA------------------------ 152 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------
Confidence 666666 666666666665543 12223445555555555555555555555544
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 323 LMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKN 402 (806)
Q Consensus 323 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 402 (806)
+... .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++
T Consensus 153 ------------~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 153 ------------QLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp ------------HHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------Hhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3221 123333344444445555555555555544432 22344455555555555555555555555
Q ss_pred HHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047492 403 SIDHG--------LFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474 (806)
Q Consensus 403 m~~~~--------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 474 (806)
..+.. ...+..++..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44311 12234455566666666666666666666665543 3345566666666666666666666666665
Q ss_pred hcCCCCCHHHHHHHHHHH-HhcCC
Q 047492 475 RMNKVASENTYIQLIHGF-NKSNR 497 (806)
Q Consensus 475 ~~~~~~~~~~~~~li~~~-~~~~~ 497 (806)
+..+. +...+..+..++ ...|+
T Consensus 298 ~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred ccCCC-chHHHHHHHHHHHHHhCc
Confidence 54433 555566666555 33444
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.3e-13 Score=148.72 Aligned_cols=274 Identities=9% Similarity=0.000 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CC
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DG 391 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 391 (806)
.++.++|...|++..+.| +...+..|-..|.. .+++++|.+.|+...+.| +...+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 445555555555554433 33344444444444 455555555555555433 33444444444444 45
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKV 463 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 463 (806)
+.++|.+.|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 5556666665555543 44455555555554 555666666666555543 33444445555544 4556
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQ 539 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 539 (806)
++|..+|+...+.+ +...+..+...|.. .+++++|+..|++..+.|
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------- 289 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------
Confidence 66666666555443 34445555555555 566666666666655432
Q ss_pred HHHhHhhCCCCChhhHHHHHHhhhcC-----CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 540 LLNMQLSHQETNFQIYNFFIDGAGHV-----KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
++..+..+...|... +++++|...|++..+.+.. . ++..+..
T Consensus 290 -----------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~---~-------------------a~~~lg~ 336 (490)
T 2xm6_A 290 -----------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA---T-------------------AQANLGA 336 (490)
T ss_dssp -----------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH---H-------------------HHHHHHH
T ss_pred -----------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH---H-------------------HHHHHHH
Confidence 111222222333332 5666666666666554311 1 1444555
Q ss_pred HHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 047492 615 GLCKAM---KANLAWGFMREMRHNGMYPSMECYEELIKLLCS----TKNYDMVVGVMNHLEGHG 671 (806)
Q Consensus 615 ~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 671 (806)
.|...| ++++|...|++..+.| +...+..+...|.. .+++++|.+.+++..+.+
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 555444 5566666666666542 44555555555555 566666666666665543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=4.6e-14 Score=153.98 Aligned_cols=428 Identities=10% Similarity=0.027 Sum_probs=233.8
Q ss_pred HHHHhhcCCCC-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCC
Q 047492 154 FGKMRFQGMDL-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC 232 (806)
Q Consensus 154 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 232 (806)
|++..+. .| +..+|..++. +.+.|++++|..+|+.+.+..+.+...|..++..+.+.|++++|..+|++.+...
T Consensus 2 le~al~~--~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh--CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 4444444 33 5668888887 4678888888999988888877777788888888888888999999888888765
Q ss_pred CCHHhHHHHHHHH-HhcCCHHHHHH----HHHHhhhCCCCCc-chhhHHHHHHHHHH---------cCCHHHHHHHHHhh
Q 047492 233 VSGFMIGIVVDAL-CKNSRFEQAGK----LLEDFKDRDDVVK-LEKAYDVWLRNLVR---------AGRLDLALEFLKSK 297 (806)
Q Consensus 233 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~ 297 (806)
|+...|...+... ...|+++.|.+ +|+.....-|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4666777666433 34577666654 6666544324333 45667776666554 57788888888877
Q ss_pred hhcCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH------
Q 047492 298 NSLEGYVPEV---FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR------ 368 (806)
Q Consensus 298 ~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~------ 368 (806)
.. .|+. ..|..........|. ..+..++. .+.++++.|..+++.+
T Consensus 157 l~----~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 157 CV----NPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp TT----SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh----chhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHH
Confidence 64 1322 222222211000000 00000000 0112233343333331
Q ss_pred HhCC---CCCC--------HHHHHHHHHHHHcC----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----
Q 047492 369 SEFG---LSPN--------GIVYNYLINSLCGD----GST----HEAYEVLKNSIDHGLFPGKKTLSILADALCR----- 424 (806)
Q Consensus 369 ~~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----- 424 (806)
.+.. ++|+ ...|...+...... ++. +.+..+|++...... -+...|..+...+.+
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhh
Confidence 1110 1222 12333333222111 111 244455555544321 134444444444443
Q ss_pred --cCChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh
Q 047492 425 --DGKFE-------QMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE-NTYIQLIHGFNK 494 (806)
Q Consensus 425 --~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~ 494 (806)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARR 368 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHH
Confidence 45544 55555555544212334455555555555555666666655555553322 22 345555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHH-HHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 495 SNRADIAARLLVEMEENGHKPT-RALHRAVIRC-LCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
.|++++|.++|++..+. .|+ ...+...... +...++ .+.+...++......+.++..|..++..+.+.|+.++|.
T Consensus 369 ~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 55556666666555543 121 1111111111 112333 233334444334444557788999999999999999999
Q ss_pred HHHHHHHHCC-CccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047492 573 AVYELMQRSG-LVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 573 ~~~~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
.+|++....+ ..|+... ..|...+......|+.+.+..+++++.+
T Consensus 446 ~~~~~al~~~~~~~~~~~-----------------~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSG-----------------EIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHSCCSCGGGCH-----------------HHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998753 2332111 1377777778889999999999988876
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.4e-15 Score=158.04 Aligned_cols=301 Identities=11% Similarity=-0.061 Sum_probs=144.9
Q ss_pred cCCcchHHH-HHHHHHhcCCC----CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 047492 179 QGCFDAVAV-VSKQISMRGFE----NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQ 253 (806)
Q Consensus 179 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (806)
.|++++|.. .+++.....+. +...+..+...+...|++++|...|+++.+..+ .+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 55554444332 234566666667777777777777777666543 345566666667777777777
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 254 AGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
|...|++.... .+.+..++..+...+...|++++|++.++++.......+. .+..+... ..
T Consensus 117 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~-------~~-------- 177 (368)
T 1fch_A 117 AISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH--LVTPAEEG-------AG-------- 177 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG--GCC----------------------
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHHHHHH-------hh--------
Confidence 77777766654 1334456666666666666666666666666542211111 11100000 00
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLS-PNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGK 412 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 412 (806)
...+. ..+. .+..+...|++++|...|+++.+.... ++..++..+...+.+.|++++|...++++.+... .+.
T Consensus 178 ---~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~ 251 (368)
T 1fch_A 178 ---GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDY 251 (368)
T ss_dssp ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred ---hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCH
Confidence 00000 0000 111112444455555555544432210 0244444555555555555555555555444321 134
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC----------CH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA----------SE 482 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~ 482 (806)
.++..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++...+..+.. ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 445555555555555555555555554443 3344455555555555555555555555554432221 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 047492 483 NTYIQLIHGFNKSNRADIAARLLV 506 (806)
Q Consensus 483 ~~~~~li~~~~~~~~~~~a~~~~~ 506 (806)
.+|..+..+|...|++++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 556666666666666666655554
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=4.9e-13 Score=144.24 Aligned_cols=352 Identities=13% Similarity=0.058 Sum_probs=279.2
Q ss_pred chhHHHHHHHHHHh----cCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCcc
Q 047492 130 QVRFNDTLVMGYAL----AGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVE----QGCFDAVAVVSKQISMRGFENDV 201 (806)
Q Consensus 130 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 201 (806)
+...+..+...|.. .+++++|+..|++..+.| ++.++..+-..|.. .+++++|...|++..+.+ +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH
Confidence 56666667777777 788899999998887764 56677778788887 788889999998888764 445
Q ss_pred chHHHHHHhhc----cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCcchhh
Q 047492 202 TRTIMLKCLCK----QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK----NSRFEQAGKLLEDFKDRDDVVKLEKA 273 (806)
Q Consensus 202 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 273 (806)
.+..|...|.. .+++++|.++|++..+.+ +...+..|...|.. .+++++|.+.|++..+. + +...
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a 185 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 66667777777 788999999999888775 35667777778877 78899999999888775 3 4567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhH
Q 047492 274 YDVWLRNLVR----AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK----ENRLMEVFDLFMDMKEGQISPDGVTM 345 (806)
Q Consensus 274 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~ 345 (806)
+..+...|.. .++.++|++.|++..+ . .+...+..+...|.. .++.++|..+|++..+.| +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSAT-S---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 7777778877 7899999999998876 2 345566777777775 789999999999888764 45566
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCHHHHH
Q 047492 346 NTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD-----GSTHEAYEVLKNSIDHGLFPGKKTLS 416 (806)
Q Consensus 346 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (806)
..+-..|.. .++.++|.+.|+...+.| +...+..+...|... ++.++|...|++..+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 667777777 789999999999988754 556777777777776 89999999999988875 456677
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 047492 417 ILADALCRDG---KFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLI 489 (806)
Q Consensus 417 ~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 489 (806)
.+...|...| +.++|.+++++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777656 7889999999988874 56778888888888 789999999999988765 577888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 047492 490 HGFNK----SNRADIAARLLVEMEENG 512 (806)
Q Consensus 490 ~~~~~----~~~~~~a~~~~~~m~~~~ 512 (806)
..|.. .++.++|...|++..+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88888 899999999999998855
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=8.9e-16 Score=159.52 Aligned_cols=305 Identities=11% Similarity=0.037 Sum_probs=183.4
Q ss_pred HHhcCChhhHHH-HHHHHhhcCC-CC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCH
Q 047492 141 YALAGKPDIALH-LFGKMRFQGM-DL--DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKI 216 (806)
Q Consensus 141 ~~~~~~~~~A~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 216 (806)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...|+++.+..+.+..++..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344578888888 8886654311 11 3567888888899999999999999999988877888889999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHh
Q 047492 217 DEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKS 296 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (806)
++|.+.|++..+..+ .+..++..+...+...|++++|.+.|+++....... ...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC---------------------
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHH-------hh-------
Confidence 999999999887654 467788889999999999999999999888652111 1111111000 00
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 047492 297 KNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP-DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSP 375 (806)
Q Consensus 297 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 375 (806)
...+. ..+. .+..+...|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.
T Consensus 178 -----~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -----GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -----hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 00000 0011 1112225556666666666655532111 34555666666666666666666666655432 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------C
Q 047492 376 NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIK----------L 445 (806)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~ 445 (806)
+..++..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++|...++.+.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 455666666666666666666666666655432 24556666666666666666666666666553211 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
...+|..+..+|...|+.++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14566677777777777777766654
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.5e-15 Score=150.07 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=69.4
Q ss_pred hcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 222 (806)
+.|+.++|.+.++++. ++.+|..+..++.+.|++++|++.|... ++..+|..++..+...|++++|..+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5566777777777773 2347777777777777777777777442 4555667777777777777777775
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCC
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEG 302 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 302 (806)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 5555542 2345566667777777777776665553 244456666666666666666666666654
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047492 303 YVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNY 382 (806)
Q Consensus 303 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 382 (806)
..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 24666666666666666666666655 24566666666666666666664433321 122222334
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 383 LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 383 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
++..|.+.|++++|..+++...... .-....|+-+.-.|+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 5555666666666666665555333 223444444444443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=4.7e-14 Score=152.00 Aligned_cols=346 Identities=14% Similarity=-0.032 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-C-CCCHHHHHHHHHHHHc--CCChhHHHHHHHHHHhCCCCCCHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEF-----G-L-SPNGIVYNYLINSLCG--DGSTHEAYEVLKNSIDHGLFPGKK 413 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~-~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~ 413 (806)
.+|+.+..+|...|++++|...+++..+. + . .....++..+..++.. .+++++|++.|++..+.... +..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHH
Confidence 45555555566666666666555554321 0 0 0122344433333332 34566666666666654321 233
Q ss_pred HHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHH
Q 047492 414 TLSILADA---LCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYI 486 (806)
Q Consensus 414 ~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 486 (806)
.+..+..+ +...++.++|.+.+++..+.. +.+..++..+...+.. .|+.++|.+.+++.....+. +...+.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHH
Confidence 33333322 334455666666666666554 3344444444444333 34566677777666655444 566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRA-LHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHV 565 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 565 (806)
.+...|...|++++|...+++..+ ..|+.. ++..+..++..... ... ... ...........
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~y~~~~~------~~~----~~~------~~~~~~~~~~~ 313 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQIGCCYRAKVF------QVM----NLR------ENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHH------HHH----HC------------CHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHH------Hhh----hHH------HHHHHHHHHHH
Confidence 777777777777777777777665 234322 22222222110000 000 000 00000001112
Q ss_pred CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--H
Q 047492 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME--C 643 (806)
Q Consensus 566 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~ 643 (806)
+..+.|...|++..+. .|+... ++..+...|...|++++|+..|++..+....+... .
T Consensus 314 ~~~~~A~~~~~~a~~~--~~~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEA--NDNLFR------------------VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHHHHHHHHHHH--CTTTCC------------------CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHhhc--CCchhh------------------hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 2357788888887753 343322 48889999999999999999999998854333221 2
Q ss_pred HHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc
Q 047492 644 YEELIK-LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG 722 (806)
Q Consensus 644 ~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (806)
+..+.. .+...|++++|+..+++..+.... ... ..+....+.++++......|.+..+++.|..+|..
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~---------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SRE---------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHH---------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHH---------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 223322 234689999999999998876533 211 12223344455555556667777777777777777
Q ss_pred cccchhhHHHHHHHHHcC
Q 047492 723 CIKVSQDIEGLQKMIEQC 740 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~ 740 (806)
.|+.++|++.|+++++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 777777777777777754
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.3e-15 Score=153.26 Aligned_cols=348 Identities=11% Similarity=0.071 Sum_probs=159.8
Q ss_pred HhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHH
Q 047492 107 HCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVA 186 (806)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 186 (806)
-+.|+++.|.++++.+.. +.+|+.+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 456778899999998833 359999999999999999999999763 47789999999999999999999
Q ss_pred HHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 047492 187 VVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD 266 (806)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 266 (806)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+.
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 977777764 5567889999999999999999998875 2666799999999999999999999999872
Q ss_pred CCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047492 267 VVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMN 346 (806)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 346 (806)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 150 ------n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 150 ------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 5999999999999999999999987 26889999999999999999996655432 23444455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCC------CHHHHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH-GLFP------GKKTLSILA 419 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~ll 419 (806)
.++..|.+.|.+++|..+++...... +-....|+-|-.+|++- ++++..+.++..... ++.| +...|.-+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999987654 45567788887777764 344444443332211 1111 234566677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047492 420 DALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRAD 499 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 499 (806)
..|...++++.|... |.++ +++..--..+.....+..+.+--.+...-..+. .+...+.|+.++...=+..
T Consensus 290 ~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHT 360 (449)
T ss_dssp HHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHH
T ss_pred HHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcH
Confidence 777777777776653 3333 233333333444445555555444443333333 2335666666666666666
Q ss_pred HHHHHHHH
Q 047492 500 IAARLLVE 507 (806)
Q Consensus 500 ~a~~~~~~ 507 (806)
.+.++|+.
T Consensus 361 r~v~~~~~ 368 (449)
T 1b89_A 361 RAVNYFSK 368 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=180.21 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhhhh--cCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 271 EKAYDVWLRNLVRAGRLDLALEFLKSKNS--LEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
..||+++|++|++.|++++|.++|++|.+ ..|+.||++|||+||++|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34666666666666666666666665542 1356666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 349 LCFFCKAGMV-DVAIELYKSRSEFGLSPNGIVYNYLINSLC 388 (806)
Q Consensus 349 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 388 (806)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 6666666653 556666666666666666666666665443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=2.7e-16 Score=163.13 Aligned_cols=264 Identities=9% Similarity=-0.036 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHh
Q 047492 482 ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDG 561 (806)
Q Consensus 482 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 561 (806)
...|..+...+.+.|++++|+..|+++.+. .| .+..+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p----------------------------------~~~~~~~~lg~~ 108 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DP----------------------------------GDAEAWQFLGIT 108 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc----------------------------------CCHHHHHHHHHH
Confidence 334556666666666666666666666542 11 234445555666
Q ss_pred hhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 047492 562 AGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS- 640 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~- 640 (806)
|...|++++|...|+++.+. .|+... +|..+...|...|++++|...|+++.+. .|+
T Consensus 109 ~~~~g~~~~A~~~~~~al~~--~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 166 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLEL--QPNNLK------------------ALMALAVSYTNTSHQQDACEALKNWIKQ--NPKY 166 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCCHH------------------HHHHHHHHHHccccHHHHHHHHHHHHHh--Cccc
Confidence 66666666666666666543 233221 3566666666666666666666666552 121
Q ss_pred ----------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 641 ----------MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-TSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 641 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
...+..+...+...|++++|.+.++++.+..... +...+..+...+...|+.++|...++++....|.+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 1222334556666777777777777776654331 45566666667777777777777777777767777
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC-----------C
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYE-----------P 777 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~-----------p 777 (806)
..++..++.+|...|++++|+..++++.+. .+.+..+|..+..+|.. |++++|...|+++...... .
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 325 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhh
Confidence 788888888888889999999999988886 34557788888888888 9999999998888765211 1
Q ss_pred ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 778 DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
+..+|..+..++...|+.+.|.++.++
T Consensus 326 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 326 SGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 356788888889999999988887653
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=176.34 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=124.2
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKE---GQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYN 381 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 381 (806)
.-..|||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 047492 382 YLINSLCGDGST-HEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLR------DVTYDKFI 454 (806)
Q Consensus 382 ~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll 454 (806)
+||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+.+.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78899999999999999999999998776554 333334333 3344444 34555566
Q ss_pred HHHHhcC
Q 047492 455 SALCKAN 461 (806)
Q Consensus 455 ~~~~~~~ 461 (806)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666655
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=5e-15 Score=153.56 Aligned_cols=272 Identities=10% Similarity=0.011 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
.+..+...+.+.|++++|...|+.+.+..+.+..++..+...+...|++++|.+.|++..+..+ .+..++..+...|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 3555555555555555555555555555544555555555555555555555555555554432 234555555556666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCcch-hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 047492 248 NSRFEQAGKLLEDFKDRDDVVKLE-KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEV 326 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 326 (806)
.|++++|+..|+++... .|+. ..+..+ ......+..+...+...|++++|
T Consensus 146 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ---NPKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp TTCHHHHHHHHHHHHHH---CHHHHCC---------------------------------------------CCHHHHHH
T ss_pred cccHHHHHHHHHHHHHh---CccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 66666666666555432 1110 011000 00011122233444444444444
Q ss_pred HHHHHHHHhCCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 327 FDLFMDMKEGQIS-PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSID 405 (806)
Q Consensus 327 ~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 405 (806)
...++++.+.... ++..++..+...|...|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444443211 034444445555555555555555555544422 22344555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 406 HGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNI-----------KLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 406 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
.... +..++..+..+|...|++++|...++++.+... ..+..+|..+..++...|+.+.+.++.+
T Consensus 276 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 276 IQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3211 344455555555555555555555555443210 0123456666666666666666655443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=4.9e-14 Score=139.54 Aligned_cols=254 Identities=9% Similarity=0.031 Sum_probs=180.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcch--hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcC
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLE--KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKEN 321 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 321 (806)
-....|++..|+..++.... ..|+. .....+.++|...|+++.|+..++.. ..|+..++..+...+...+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCC
Confidence 34556777777777776543 23333 34455667778888888877755432 2456667777778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPD-GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
+.++|++.++++...+..|+ ...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877665454 44555556778888888888888876 356778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 047492 401 KNSIDHGLFPGKKTL---SILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 477 (806)
+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.+
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887653 443211 122333445578888888888888774 5677788888888888888888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCH
Q 047492 478 KVASENTYIQLIHGFNKSNRADI-AARLLVEMEENGHKPTR 517 (806)
Q Consensus 478 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~ 517 (806)
+. +..++..++..+...|+.++ +.++++++.+ +.|+.
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 65 77788888888888888765 5678888776 45554
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=6.8e-15 Score=149.95 Aligned_cols=275 Identities=11% Similarity=0.026 Sum_probs=161.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCN 529 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (806)
+..+...+...|++++|..+++.+.+..+. +...|..+...+...|++++|...++++.+. .
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~--------------- 85 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--D--------------- 85 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---------------
Confidence 444555566666666666666666655443 5555666666666666666666666665541 1
Q ss_pred cCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhH
Q 047492 530 METPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLY 609 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 609 (806)
+.+..++..+...|...|++++|.+.++++.+. .|+... .+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~ 126 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQ------------------LG 126 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTT------------------C-
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHH------------------HH
Confidence 123455666666666666666666666666543 232221 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEEL-IK-LLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
..+...+ |+......+ .. .+...|++++|.+.++++.+.... +...+..+...+.
T Consensus 127 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 183 (327)
T 3cv0_A 127 SVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYN 183 (327)
T ss_dssp -----------------------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 2220000 000000000 11 133444455555555554443221 3334444444455
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
..|+.++|...++++....|.+..++..++..|...|++++|+..++++.+. .+.+...|..+...|.. |++++|...
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 5555555555555555555566667778888888888888889988888886 35567788888888888 999999999
Q ss_pred HHHHHHcCCCC-----------ChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 767 FNRMRRKGYEP-----------DQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 767 ~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+++........ +..++..+..++.+.|+.++|.+++++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 98887653332 4677888888999999999998887653
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=3e-14 Score=145.17 Aligned_cols=279 Identities=11% Similarity=-0.050 Sum_probs=175.3
Q ss_pred cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHH
Q 047492 201 VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRN 280 (806)
Q Consensus 201 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (806)
..+..+...+...|++++|..+|+++.+..+ .+..++..+...+...|++++|.+.|++.... .+.+...+..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHH
Confidence 3456666667777777777777777666543 34556666666677777777777777666553 22334555566666
Q ss_pred HHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HH-HHHHcCCh
Q 047492 281 LVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTV-LC-FFCKAGMV 358 (806)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~-~~~~~g~~ 358 (806)
+...|++++|++.++++..... .+...+..+... .|+......+ .. .+...|++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 6666666666666666554211 111111111000 0001111111 11 25566677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (806)
++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776643 33566777777777777888888888877776532 25667777777888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 439 LERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA-----------SENTYIQLIHGFNKSNRADIAARLLVE 507 (806)
Q Consensus 439 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~ 507 (806)
.+.. +.+...+..+...|.+.|++++|.+.++...+..+.. +...|..+...+.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7764 4456777788888888888888888888877655442 466788888888889999888888775
Q ss_pred HH
Q 047492 508 ME 509 (806)
Q Consensus 508 m~ 509 (806)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=5.1e-13 Score=143.86 Aligned_cols=372 Identities=10% Similarity=-0.034 Sum_probs=232.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----C
Q 047492 341 DGVTMNTVLCFFCKAGMVDVAIELYKSRSEF--------GLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDH-----G 407 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~ 407 (806)
....||.+...+...|+.++|++.|++..+. .-.....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888888888888888775431 11234578899999999999999999999887631 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHhhcCCCC
Q 047492 408 -LF-PGKKTLSILADALCRD--GKFEQMKDLVIFALERNIKLRDVTYDKFISA---LCKANKVEVGYLIHSELSRMNKVA 480 (806)
Q Consensus 408 -~~-p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~ 480 (806)
.. ....++.....++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|.+.++...+.++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 11 1345565555555443 46889999999888765 3344455444444 34567778888888887776654
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHH
Q 047492 481 SENTYIQLIHGFNK----SNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYN 556 (806)
Q Consensus 481 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (806)
+...+..+...+.. .|++++|.+.+++.... .+.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------------------------------------~~~~~~~~~ 251 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------------------------------------APGVTDVLR 251 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH------------------------------------CSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------------------------------------CccHHHHHH
Confidence 56666655555444 45667777777776552 233556677
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh------------------
Q 047492 557 FFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK------------------ 618 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------------ 618 (806)
.+...|...|++++|...|++..+. .|+... ++..+..+|..
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~------------------~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEY--IPNNAY------------------LHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH------------------HHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh--CCChHH------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7888888999999999999988854 465543 13333333321
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHHHHH-HhhccccHHH
Q 047492 619 -AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNTLLL-HALKTRDLYE 694 (806)
Q Consensus 619 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~ 694 (806)
.+.+++|...+++..+.. +.+..++..+...+...|++++|.+.+++..+....+... .+..+.. .....|+.++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 233567888888877642 2245567778889999999999999999998876544321 2222222 2346788999
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 695 AWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 695 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|...+.++..-.|....... ....+..++++..+. .+.+..+|+.|..+|.. |++++|++.|++..+.
T Consensus 391 Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999988765554432221 122345566666665 36678899999999999 9999999999998876
Q ss_pred C-CCCChhhH
Q 047492 774 G-YEPDQWTF 782 (806)
Q Consensus 774 g-~~p~~~~~ 782 (806)
| ..|+..+|
T Consensus 460 ~~~~p~a~~~ 469 (472)
T 4g1t_A 460 GSLIPSASSW 469 (472)
T ss_dssp ----------
T ss_pred CCCCCcHhhc
Confidence 5 34554443
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=1.4e-13 Score=136.28 Aligned_cols=254 Identities=11% Similarity=0.047 Sum_probs=137.3
Q ss_pred hhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHH
Q 047492 210 LCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDL 289 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (806)
....|++..|...++......+.........+..+|...|+++.|+..++. ..+|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 334555555555555544333222122334445556666666655554322 123444555555555555666666
Q ss_pred HHHHHHhhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 290 ALEFLKSKNSLEGYVPE-VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 290 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
|++.++++.. .+..|+ ...+..+...+...|++++|++.+++ +.+...+..+...|.+.|++++|.+.|+.+
T Consensus 84 A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666665543 222333 22333344555666666666666654 245555666666666666666666666666
Q ss_pred HhCCCCCCHHHH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047492 369 SEFGLSPNGIVY---NYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKL 445 (806)
Q Consensus 369 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (806)
.+.. |+.... ...+..+...|++++|..+|+++.+.. ..+...++.+..++.+.|++++|...++++.+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5532 332211 122233344466666666666666552 2355666666666666666666666666666654 44
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHhhcCCC
Q 047492 446 RDVTYDKFISALCKANKVEV-GYLIHSELSRMNKV 479 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~ 479 (806)
+..++..++..+...|+.++ +.++++.+.+.++.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 55566666666666666654 45666666655443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=6.8e-13 Score=129.70 Aligned_cols=222 Identities=10% Similarity=-0.032 Sum_probs=185.6
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
...+..+...+...|++++|...|++..+.. .+... |..+..++...|++++|...+++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~A~~~~~~ 63 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-------------------LNNRAAAEYEKGEYETAISTLND 63 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-------------------HHHHHHHHHHcccHHHHHHHHHH
Confidence 4567788888999999999999999988765 44443 88899999999999999999999
Q ss_pred HHhCC--CCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhc
Q 047492 632 MRHNG--MYPS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLIN 705 (806)
Q Consensus 632 m~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 705 (806)
..+.. ..++ ..++..+..++...|++++|...++++.+.... ...+...|+.++|...++.+...
T Consensus 64 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHc
Confidence 88732 1122 577888999999999999999999999886533 23456778899999999999888
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
.|.+..++..+...|...|++++|+..++++.+. .+.+...|..+...|.. |++++|+..+++..+.. +.+..++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 212 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIR 212 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHH
Confidence 8888889999999999999999999999999987 35577889999999999 99999999999998763 335677888
Q ss_pred HHhhhhccCCHHHHHHHHHhh
Q 047492 785 LKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 785 l~~~~~~~g~~~eA~~~l~~m 805 (806)
+..++.+.|++++|.+.+++.
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998764
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=7.8e-13 Score=124.92 Aligned_cols=195 Identities=12% Similarity=-0.093 Sum_probs=160.5
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHH
Q 047492 605 PRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL 683 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 683 (806)
+...+..+...+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...+++..+..+ .+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 4456889999999999999999999999984 44 677888899999999999999999999998763 3456677788
Q ss_pred HHhhcc-----------ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHH
Q 047492 684 LHALKT-----------RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILL 752 (806)
Q Consensus 684 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 752 (806)
..+... |+.++|...++++....|.+...+..+..+|...|++++|+..|+++.+.. .+...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 999999999999999999999999999999999999999999999999986 7888999999
Q ss_pred HHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 753 RRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
.+|.. |++++|+..|++..+... .+...+..+..++.+.|++++|++.+++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999 999999999999987632 35677888999999999999999998763
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.6e-12 Score=124.48 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=125.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----hhhHHH
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQI--SPD----GVTMNT 347 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 347 (806)
|..+...+...|++++|++.|++..... .+...+..+..++...|++++|...+++..+... .++ ..++..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3334444444444444444444443321 3344444444444445555555554444443211 011 345555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047492 348 VLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGK 427 (806)
Q Consensus 348 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 427 (806)
+...|...|++++|...|++..+. .|+. ..+...|++++|.+.++++...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 555566666666666666665542 2332 2234445566666666666654221 34455566666666777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 428 FEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVE 507 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 507 (806)
+++|...++.+.+.. +.+..++..+...|...|++++|...++...+..+. +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777777777666654 345666777777777777777777777777665544 566777777777777777777777777
Q ss_pred HHH
Q 047492 508 MEE 510 (806)
Q Consensus 508 m~~ 510 (806)
..+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=8.3e-12 Score=117.81 Aligned_cols=199 Identities=13% Similarity=-0.026 Sum_probs=121.2
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3444555555566666666666666666655421 245555566666666666666666666665532 23445566666
Q ss_pred HHHHcC-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 385 NSLCGD-----------GSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 385 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
..+... |++++|...|++..+.... +...+..+...+...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 7777777777777765332 45666777777777777777777777777766 566777777
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047492 454 ISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEME 509 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 509 (806)
..+|...|++++|...++...+..+. +...+..+...+...|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777778888888777777776554 66777777777777888888877776653
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=2.9e-11 Score=128.06 Aligned_cols=378 Identities=12% Similarity=-0.025 Sum_probs=208.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMV---DVAIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
+...+.+.|++++|+++|++..+.| +...+..+-..|...|+. ++|...|+...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3445566677777777777776654 223333444455556666 7777777776642 44455555554444
Q ss_pred CC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047492 390 DG-----STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKF---EQMKDLVIFALERNIKLRDVTYDKFISALCKAN 461 (806)
Q Consensus 390 ~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 461 (806)
.+ +.++|...|++..+.|... .+..|...|...+.. .++.+.+......|. ......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 44 6677888888877765432 444555555544432 345555555555552 334556667777777
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHH
Q 047492 462 KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN---RADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFL 538 (806)
Q Consensus 462 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 538 (806)
.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~----------------------- 212 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT----------------------- 212 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-----------------------
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-----------------------
Confidence 66555544333333222224447888888888888 8889999998888765222
Q ss_pred HHHHhHhhCCCCChhhHHHHHHhhhc----CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 539 QLLNMQLSHQETNFQIYNFFIDGAGH----VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
...+..+...|.. .+++++|...|++.. .| ... ++..+..
T Consensus 213 -------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~------------------a~~~Lg~ 256 (452)
T 3e4b_A 213 -------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPA------------------SWVSLAQ 256 (452)
T ss_dssp -------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STH------------------HHHHHHH
T ss_pred -------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHH------------------HHHHHHH
Confidence 1112223333322 267788888888776 22 111 2455555
Q ss_pred H-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 615 G-L--CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK-----NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 615 ~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
. + ...+++++|...|++..+.| +...+..+...|. .| ++++|...+++.. .-++.....+...|
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 5 3 45778888888888887766 5555666666665 44 7888888877765 22344555555555
Q ss_pred hc----cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc----cccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-
Q 047492 687 LK----TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG----CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV- 757 (806)
Q Consensus 687 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 757 (806)
.. ..+..+|...++.+... .+......|...|.. ..+..+|...++...+.|.+ +.......+.....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTP 405 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCH
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCH
Confidence 44 33778888887777643 234445566666653 45788888888888887632 22222222222233
Q ss_pred hcHHHHHHHHHHHHHc
Q 047492 758 SEIDHACELFNRMRRK 773 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~ 773 (806)
++.++|..+.++....
T Consensus 406 ~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 406 AQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777888777766543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=1.2e-11 Score=122.03 Aligned_cols=231 Identities=9% Similarity=-0.058 Sum_probs=180.4
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMRE 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 631 (806)
+..+......+...|++++|...|++..+. .|+... ++..+...|...|++++|+..+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPY------------------IYNRRAVCYYELAKYDLAQKDIET 62 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCST------------------THHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHH------------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566677888899999999999998864 344332 378888899999999999999999
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 632 MRHNGMYPS--MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 632 m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
..+.+-.++ ...|..+...+...|++++|.+.+++..+.... +...+..+...+...|+.++|...++++....|.+
T Consensus 63 a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 988432222 334788888899999999999999998886533 45678888888999999999999999998888888
Q ss_pred hhhHHHHH-HhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hc---HHHHHHHHHHHHHcC-CCCC-----
Q 047492 710 ISLLGQLI-GVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SE---IDHACELFNRMRRKG-YEPD----- 778 (806)
Q Consensus 710 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~---~~~A~~~~~~m~~~g-~~p~----- 778 (806)
..++..+. ..|. .+++++|+..++++.+. .+.+...|..+..++.. |+ +++|...+++..+.. -.|+
T Consensus 142 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 142 PKVFYELGQAYYY-NKEYVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 88888888 5554 45999999999999986 34456777778888877 77 888888888887652 2233
Q ss_pred -hhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 779 -QWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 779 -~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
..++..+...+.+.|++++|.+++++.
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246777888899999999999998864
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=3e-11 Score=127.93 Aligned_cols=342 Identities=9% Similarity=-0.035 Sum_probs=198.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc---chHHHHHHHHHhcCCCCccchHHHHHHhhcc
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF---DAVAVVSKQISMRGFENDVTRTIMLKCLCKQ 213 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 213 (806)
+...+.+.|++++|+.+|++..+.| ++.++..+-..+...|+. ++|..+|+...+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 4455666777888888888776665 333444455555556666 7777777777754 445555555544444
Q ss_pred C-----CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH---HHHHHHhhhCCCCCcchhhHHHHHHHHHHcC
Q 047492 214 K-----KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA---GKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG 285 (806)
Q Consensus 214 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (806)
+ ++++|.+.|++..+.|. + ..+..|...|...+..+.+ .+.+...... + +...+..+...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCC
Confidence 3 67778888887777654 2 2556666666665544333 3333333322 2 2335556666666666
Q ss_pred CH----HHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---
Q 047492 286 RL----DLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKEN---RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKA--- 355 (806)
Q Consensus 286 ~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--- 355 (806)
.+ +.+..+++.... .+...+..+...|...| +.++|++.|++..+.|. ++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CcccCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 43 334444444332 23336777777777788 78888888888877764 3444445555566443
Q ss_pred -CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 047492 356 -GMVDVAIELYKSRSEFGLSPNGIVYNYLINS-L--CGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDG----- 426 (806)
Q Consensus 356 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----- 426 (806)
++.++|.+.|+... . -+...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 57888888888876 3 344455555554 3 45778888888888887765 5566666666665 44
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCH
Q 047492 427 KFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK----SNRA 498 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 498 (806)
++++|..+|++.. .-+...+..|...|.. ..+.++|..+|+...+.+ +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 7888888887766 3355566666666665 337888888888877665 34455566666654 4578
Q ss_pred HHHHHHHHHHHHCC
Q 047492 499 DIAARLLVEMEENG 512 (806)
Q Consensus 499 ~~a~~~~~~m~~~~ 512 (806)
.+|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 88888888887765
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=5.4e-11 Score=117.19 Aligned_cols=235 Identities=10% Similarity=0.028 Sum_probs=131.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHH
Q 047492 276 VWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPD--GVTMNTVLCFFC 353 (806)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~ 353 (806)
.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.+..++ ...|..+...|.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34444445555555555555544311 12233555555566666666666666666555321111 112555566666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 047492 354 KAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKD 433 (806)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (806)
..|++++|.+.|+...+.. +.+..++..+...|...|++++|.+.|++..+... .+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655532 23345666666666666666666666666655422 234444444423333446777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcC-CCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 047492 434 LVIFALERNIKLRDVTYDKFISALCKANK---VEVGYLIHSELSRMN-KVAS------ENTYIQLIHGFNKSNRADIAAR 503 (806)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~ 503 (806)
.++.+.+.. +.+...+..+...+...|+ .++|...+++..+.. ..|+ ...|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777666654 3345555666666666666 666666666655432 1111 2456677777778888888888
Q ss_pred HHHHHHHCCCCCCH
Q 047492 504 LLVEMEENGHKPTR 517 (806)
Q Consensus 504 ~~~~m~~~~~~p~~ 517 (806)
.|++..+ +.|+.
T Consensus 243 ~~~~al~--~~p~~ 254 (272)
T 3u4t_A 243 AWKNILA--LDPTN 254 (272)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCccH
Confidence 8888776 34543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=6e-11 Score=115.33 Aligned_cols=199 Identities=15% Similarity=0.043 Sum_probs=126.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047492 308 FRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSL 387 (806)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 387 (806)
..+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 334445555556666666666666555532 1245556666666666666666666666665532 23455666666666
Q ss_pred HcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047492 388 CGDGSTHEAYEVLKNSIDHGLFP-GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVG 466 (806)
Q Consensus 388 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 466 (806)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66777777777777666522233 34455666666677777777777777766654 34556667777777777777777
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 467 YLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
...++...+..+. +...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777665443 566677777777777777777777777766
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=7.4e-12 Score=128.08 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=192.5
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC-hHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK-ANLAWGFMR 630 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~ 630 (806)
...|+.+...+.+.|++++|+..|++..+. .|+..+ +|..+..++...|+ +++|+..|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~------------------a~~~~g~~l~~~g~d~~eAl~~~~ 156 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYT------------------VWHFRRVLLKSLQKDLHEEMNYIT 156 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHH------------------HHHHHHHHHHHcccCHHHHHHHHH
Confidence 456888888899999999999999999854 576654 58889999999997 999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 631 EMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 631 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
+.++. .| +...|..+..++...|++++|+..++++++... -+...+..+...+...|++++|+..++++....|.+
T Consensus 157 ~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 157 AIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99984 45 677889999999999999999999999998753 355678888889999999999999999999999999
Q ss_pred hhhHHHHHHhhhc-cccchhh-----HHHHHHHHHcCCCCChhhHHHHHHHHhh-h--cHHHHHHHHHHHHHcCCCCChh
Q 047492 710 ISLLGQLIGVFSG-CIKVSQD-----IEGLQKMIEQCFPLDTYTYNILLRRLSV-S--EIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 710 ~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
...|+.+..+|.. .|..++| +..++++.+. .+.+...|+.+...+.. | ++++|++.+.++ ..-..+..
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~ 310 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHH
Confidence 9999999999998 6666888 5889999986 35567889999999988 7 689999999888 22334567
Q ss_pred hHHHHHhhhhccC--------C-HHHHHHHHHhh
Q 047492 781 TFDILKCGLYNCL--------R-TDEAERRLEEM 805 (806)
Q Consensus 781 ~~~~l~~~~~~~g--------~-~~eA~~~l~~m 805 (806)
.+..+..+|.+.| + .++|+++++++
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7888999998874 3 58999998875
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=3.5e-12 Score=126.01 Aligned_cols=219 Identities=14% Similarity=-0.033 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHH
Q 047492 145 GKPDIALHLFGKMRFQGMD--L-DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVE 221 (806)
Q Consensus 145 ~~~~~A~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 221 (806)
|++++|+..|+++.+.... | +..+|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4555566666655543211 1 233455555555555666666666665555555455555555555555566666665
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcC
Q 047492 222 YFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLE 301 (806)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 301 (806)
.|++..+... .+..++..+...|.+.|++++|...|+++... .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 99 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555432 23445555555555555555555555555443 2222222222233334455555555554433211
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 302 GYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP---DGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 302 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.++...+ .++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+
T Consensus 175 --~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 --DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp --CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122222 23344444444455555554443321100 123344444444444555555555544443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=8.3e-09 Score=112.80 Aligned_cols=445 Identities=11% Similarity=-0.009 Sum_probs=235.7
Q ss_pred CChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCC---HHHHHH
Q 047492 145 GKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKK---IDEAVE 221 (806)
Q Consensus 145 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 221 (806)
....+-+..|++....+ .-|..+|..++..+.+.+.++.+..+|+.+....+.....|...+..-.+.|+ ++.+.+
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34555565666665553 23777888888888777888888888888887766666677777777777777 888888
Q ss_pred HHHHhHhCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHhhhCCCC-Ccc-hhhHHHHHHHHH--------
Q 047492 222 YFQQLVSGR-ECVSGFMIGIVVDALCKNSRF--------EQAGKLLEDFKDRDDV-VKL-EKAYDVWLRNLV-------- 282 (806)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~-~~~-~~~~~~li~~~~-------- 282 (806)
+|+..+... ..|++..|...+....+.++. +.+.++|+.....-|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888877654 135666777776665555443 2334666654443244 333 356666665432
Q ss_pred -HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHH
Q 047492 283 -RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVA 361 (806)
Q Consensus 283 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 361 (806)
..++++.+..+|++... .|... +..+-..|. ...+. + +..+...++.- ...+++.|
T Consensus 205 eeq~~~~~~R~iy~raL~----iP~~~-~~~~w~~Y~-------------~fe~~-~--~~~~a~~~~~e--~~~~y~~A 261 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC----QPMDC-LESMWQRYT-------------QWEQD-V--NQLTARRHIGE--LSAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT----SCCSS-HHHHHHHHH-------------HHHHH-H--CTTTHHHHHHH--HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh----CccHH-HHHHHHHHH-------------HHHHh-c--CcchHHHHHHH--hhHHHHHH
Confidence 23345666666666653 12211 111111110 00000 0 00000001100 01123333
Q ss_pred HHHHHHHHh--CCCC---------------C-----C---HHHHHHHHHHHHcCC-------ChhHHHHHHHHHHhCCCC
Q 047492 362 IELYKSRSE--FGLS---------------P-----N---GIVYNYLINSLCGDG-------STHEAYEVLKNSIDHGLF 409 (806)
Q Consensus 362 ~~~~~~~~~--~~~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~ 409 (806)
...+.++.. .++. | + ...|...+.---..+ ..+.+..+|++....-.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p- 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC- 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-
Confidence 444433221 0110 1 0 133444444322222 12234556666665422
Q ss_pred CCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCC---------C
Q 047492 410 PGKKTLSILADALCRDGKFEQMK-DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNK---------V 479 (806)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~ 479 (806)
-+...|-..+.-+...|+.++|. +++++.... ++.+...+...+...-+.|+++.|.++|+.+..... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 25666666666667777777775 888777764 345555666677777777888888888777665310 1
Q ss_pred C------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhh
Q 047492 480 A------------SENTYIQLIHGFNKSNRADIAARLLVEMEEN-GHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLS 546 (806)
Q Consensus 480 ~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 546 (806)
| ....|...+....+.|..+.|..+|.+..+. +. ....
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~---------------------------- 470 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPD---------------------------- 470 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTH----------------------------
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChH----------------------------
Confidence 2 1235677777777777788888888877764 11 1111
Q ss_pred CCCCChhhHHHHHHhhhcC-CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHH
Q 047492 547 HQETNFQIYNFFIDGAGHV-KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLA 625 (806)
Q Consensus 547 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 625 (806)
+|-..+..-.+. ++.+.|..+|+...+. .|+... .|...+......|+.+.|
T Consensus 471 -------lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~------------------~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 471 -------IYLENAYIEYHISKDTKTACKVLELGLKY--FATDGE------------------YINKYLDFLIYVNEESQV 523 (679)
T ss_dssp -------HHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHH------------------HHHHHHHHHHHHTCHHHH
T ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchH------------------HHHHHHHHHHhCCCHHHH
Confidence 111111111122 3356666666665543 233322 144555555555666666
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 047492 626 WGFMREMRHNGMYP--SMECYEELIKLLCSTKNYDMVVGVMNHLEGHG 671 (806)
Q Consensus 626 ~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 671 (806)
..+|+........+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666542211 23455555555555666666666666666554
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.3e-10 Score=110.68 Aligned_cols=201 Identities=9% Similarity=0.041 Sum_probs=133.9
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 307 VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386 (806)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 386 (806)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555556666666666666666665532 1245566666666677777777777777666542 2355666667777
Q ss_pred HHcC-CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 387 LCGD-GSTHEAYEVLKNSIDHGLFPG-KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464 (806)
Q Consensus 387 ~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 464 (806)
+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777766322232 4566667777777777777777777776654 345667777777788888888
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 465 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+|...++...+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888887777665523666677777777778888888888877765
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=6.3e-11 Score=115.16 Aligned_cols=130 Identities=13% Similarity=-0.043 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...|...|++++|+..|+++.+.. ..+..++..+...+...|++++|.+.++++.+..+.+..++..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4455555555555555555555555554431 113344444455555555555555555555444433334444444444
Q ss_pred hccCCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNSRFEQAGKLLEDF 261 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 261 (806)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.|++.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444311111 2233333444444444444444444443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=4.3e-10 Score=110.70 Aligned_cols=220 Identities=8% Similarity=-0.039 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047492 273 AYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLK----ENRLMEVFDLFMDMKEGQISPDGVTMNTV 348 (806)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 348 (806)
.+..+...+...|++++|++.|++..+ ..+...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 334444444444555555555554443 1123344444455555 555666666665555543 44555555
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 349 LCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DGSTHEAYEVLKNSIDHGLFPGKKTLSILAD 420 (806)
Q Consensus 349 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 420 (806)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 666666666666655543 45555555555655 666666666666666543 3445555555
Q ss_pred HHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 421 ALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 421 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
.+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555 566666666666666553 34455556666666 666666666666665553 245556666666
Q ss_pred Hh----cCCHHHHHHHHHHHHHC
Q 047492 493 NK----SNRADIAARLLVEMEEN 511 (806)
Q Consensus 493 ~~----~~~~~~a~~~~~~m~~~ 511 (806)
.. .+++++|.+.|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 66677777777766653
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=3.4e-11 Score=114.70 Aligned_cols=132 Identities=13% Similarity=0.017 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+....+.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44555555555666666666666666555441 11344555555555555555555555555555444444444455555
Q ss_pred hhcc-CCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 210 LCKQ-KKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 210 ~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
+... |++++|.+.++.+.+.+..| +...+..+...+...|++++|...|+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555 55555555555544411111 12334444444444444444444444443
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=6.5e-11 Score=121.07 Aligned_cols=243 Identities=11% Similarity=0.029 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK-VEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
.|..+...+...|++++|...++++++.. +-+...|+.+..++...|+ +++|...+++....++. +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 34444445555555555555555555544 3344555555555556664 66666666666555544 555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHH
Q 047492 493 NKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLAR 572 (806)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 572 (806)
...|++++|+..|+++++ +.| .+...|..+..++.+.|++++|+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP----------------------------------~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDA----------------------------------KNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCT----------------------------------TCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHccCHHHHHHHHHHHHH--hCc----------------------------------cCHHHHHHHHHHHHHcCChHHHH
Confidence 666666666666666554 122 23444555555556666666666
Q ss_pred HHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHh-cCChHHH-----HHHHHHHHhCCCCC-CHHHHH
Q 047492 573 AVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCK-AMKANLA-----WGFMREMRHNGMYP-SMECYE 645 (806)
Q Consensus 573 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A-----~~~~~~m~~~g~~p-~~~~~~ 645 (806)
..|+++.+. .|+... +|+.+..++.. .|..++| +..|++.++ +.| +...|.
T Consensus 221 ~~~~~al~l--~P~~~~------------------a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~ 278 (382)
T 2h6f_A 221 QYVDQLLKE--DVRNNS------------------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWN 278 (382)
T ss_dssp HHHHHHHHH--CTTCHH------------------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHH
T ss_pred HHHHHHHHh--CCCCHH------------------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHH
Confidence 666666643 343322 36666666666 4444555 366666665 334 345566
Q ss_pred HHHHHHHcCC--ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc--------c-HHHHHHHHHhh-hhccCcchhhH
Q 047492 646 ELIKLLCSTK--NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR--------D-LYEAWIRLRGM-LINEQSKISLL 713 (806)
Q Consensus 646 ~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~ 713 (806)
.+..++...| ++++|.+.+..+ +. ...+...+..+...+.+.| + .++|...++++ ....|.....|
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 6666666666 466777766665 22 1223344444554444432 1 35555555555 34444444444
Q ss_pred HHHHH
Q 047492 714 GQLIG 718 (806)
Q Consensus 714 ~~l~~ 718 (806)
..+..
T Consensus 357 ~~~~~ 361 (382)
T 2h6f_A 357 RYIGR 361 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=1.1e-09 Score=107.79 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=120.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHH----cCCHHHHHHHHHhhhhcCCCCCCcccHHH
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVR----AGRLDLALEFLKSKNSLEGYVPEVFRFNF 312 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (806)
++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+. + +...+..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~ 79 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHH
Confidence 3344444444444444444444444331 112334444444444 45555555555544431 1 3444444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 313 LVSRLLK----ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCK----AGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 313 li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 556666666666555543 44555555555655 666666666666665543 344555555
Q ss_pred HHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047492 385 NSLCG----DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIKLRDVTYDKFISA 456 (806)
Q Consensus 385 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 456 (806)
..|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|.+.+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 666666666666666553 34555556666666 666666666666666654 14455556666
Q ss_pred HHh----cCChhHHHHHHHHHhhcC
Q 047492 457 LCK----ANKVEVGYLIHSELSRMN 477 (806)
Q Consensus 457 ~~~----~~~~~~a~~~~~~~~~~~ 477 (806)
|.+ .+++++|.+.++...+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666 667777777776666554
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=4.2e-11 Score=115.67 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG 391 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 391 (806)
.+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 33333334444444444444333321 1123333334444444444444444444433321 123333444444444444
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047492 392 STHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHS 471 (806)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 471 (806)
++++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...++
T Consensus 140 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444433221 123333334444444444444444444443332 2233334444444444444444444444
Q ss_pred HHhh
Q 047492 472 ELSR 475 (806)
Q Consensus 472 ~~~~ 475 (806)
.+.+
T Consensus 218 ~~~~ 221 (243)
T 2q7f_A 218 KAID 221 (243)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 4433
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=6e-11 Score=114.53 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=161.5
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345567777788889999999999999998753 2467888889999999999999999999988754 35678899999
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE 464 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 464 (806)
..+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999987653 367788899999999999999999999998875 557788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 465 VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 465 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
+|...++...+..+. +...+..+...|...|++++|...++++.+ ..|+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~ 226 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID--IQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcch
Confidence 999999999887654 788899999999999999999999999987 34543
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.36 E-value=2.8e-11 Score=119.45 Aligned_cols=244 Identities=11% Similarity=-0.033 Sum_probs=187.4
Q ss_pred CCChhHHHHHHHHhHhcc---CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchH
Q 047492 109 AKLTPLMVDFLENYKKDR---YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAV 185 (806)
Q Consensus 109 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 185 (806)
.++++.|...++.+.... .+.+..++..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466778888888877753 23467888899999999999999999999998763 23577899999999999999999
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 047492 186 AVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRD 265 (806)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 265 (806)
...|+++.+..+.+..++..+...+...|++++|.+.++++.+... +.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 9999999998888888999999999999999999999999987653 3334444555567779999999999877664
Q ss_pred CCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC-----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047492 266 DVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE-----VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISP 340 (806)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 340 (806)
.+++...+ .++..+...++.++|++.++..... .|+ ...+..+...+...|++++|...|++..+.. |
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 23333333 4777778888899999999887641 222 4678888899999999999999999998753 4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHH
Q 047492 341 DGVTMNTVLCFFCKAGMVDVAIELY 365 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~~~~a~~~~ 365 (806)
+. +.....++...|++++|.+-+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 333355666778888877665
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.6e-08 Score=110.52 Aligned_cols=480 Identities=8% Similarity=-0.007 Sum_probs=293.4
Q ss_pred CcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHH
Q 047492 181 CFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR---FEQAGKL 257 (806)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 257 (806)
.....+..++.....++.+..+|..++..+.+.+.++.+..+|+.+...-+ .....|...+..-.+.|. ++.+.++
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 345566667777777777888999999999999999999999999987643 566788888888888888 9999999
Q ss_pred HHHhhhCCCCCcchhhHHHHHHHHHHcCCH--------HHHHHHHHhhhhcCCC-CCC-cccHHHHHHHHHh--------
Q 047492 258 LEDFKDRDDVVKLEKAYDVWLRNLVRAGRL--------DLALEFLKSKNSLEGY-VPE-VFRFNFLVSRLLK-------- 319 (806)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~li~~~~~-------- 319 (806)
|++........|+...|...+....+.++. +.+.++|+.....-|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999887522248888888888777666553 3345777777665666 554 3566666654432
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 047492 320 -ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYE 398 (806)
Q Consensus 320 -~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 398 (806)
.++++.+.++|+..+......-..+|..... +.+.-+...+.+++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHH
Confidence 3346677788887775211111122221111 11110111122222211 112333334
Q ss_pred HHHHHHh--CCC---C------------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCC
Q 047492 399 VLKNSID--HGL---F------------P-----G---KKTLSILADALCRDG-------KFEQMKDLVIFALERNIKLR 446 (806)
Q Consensus 399 ~~~~m~~--~~~---~------------p-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~ 446 (806)
.+.++.. .++ . | + ...|...+.---..+ ..+.+..+|++.+... +..
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCC
Confidence 4433221 111 0 1 0 123444443322222 1234567788887763 567
Q ss_pred HHHHHHHHHHHHhcCChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047492 447 DVTYDKFISALCKANKVEVGY-LIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (806)
...|...+..+...|+.++|. ++++......+ .+...|-.++....+.|++++|.++|+++.+.. +. .+..+-.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l--~~--~~~~~~~ 417 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRI--HL--DLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--HHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HH--Hhhhhhh
Confidence 888988888888999999996 99999887554 377778888999999999999999999987621 00 0000000
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCC
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIP 605 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~ 605 (806)
. ............ .....+|...++...+.|+.+.|..+|.+..+. .|....
T Consensus 418 ~---~p~~~~~~~~~~-------~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~--~~~~~~---------------- 469 (679)
T 4e6h_A 418 D---DPTNESAINQLK-------SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL--KKLVTP---------------- 469 (679)
T ss_dssp H---STTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT--GGGSCT----------------
T ss_pred c---cCcchhhhhhhc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCCh----------------
Confidence 0 000000000000 002335777777777888999999999998865 111110
Q ss_pred chhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CchhHHHH
Q 047492 606 RKLYNTLIVGLCK-AMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV--TSFIGNTL 682 (806)
Q Consensus 606 ~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 682 (806)
..|...+..-.+ .++++.|..+|+...+. ..-+...+..+++.....|+.+.|..+|+........+ ...++...
T Consensus 470 -~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 470 -DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp -HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 013322222223 34589999999998885 34466667788888888999999999999998765432 23455555
Q ss_pred HHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhh
Q 047492 683 LLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVF 720 (806)
Q Consensus 683 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (806)
+..-.+.|+.+.+.++.+++....|.+ .....+++-|
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f~~ry 584 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEFTNKY 584 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHHHHHh
Confidence 555566788888888888877666654 2333444444
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=2.2e-11 Score=128.10 Aligned_cols=306 Identities=10% Similarity=-0.083 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 444 KLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVAS----ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
......+......+...|++++|...++...+..+. + ...|..+...|...|++++|...+++..+..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 77 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------- 77 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------
Confidence 344455666777788888888888888888776443 3 3567788888999999999999998876410
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc-cCcchhHHHHHHHH
Q 047492 520 HRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV-PQLGSNILMLQSYL 598 (806)
Q Consensus 520 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~~~ 598 (806)
...++ .+....++..+...|...|++++|...+++..+.... ++...
T Consensus 78 --------~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 125 (406)
T 3sf4_A 78 --------RTIGD---------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------- 125 (406)
T ss_dssp --------HHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------
T ss_pred --------Hhccc---------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc---------
Confidence 00000 0112345777888899999999999999987743111 11000
Q ss_pred hhhCCCCchhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHc
Q 047492 599 KRKNGIPRKLYNTLIVGLCKAMK--------------------ANLAWGFMREMRHN----GMYP-SMECYEELIKLLCS 653 (806)
Q Consensus 599 ~~~~~~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~ 653 (806)
...++..+...|...|+ +++|...+++..+. +..| ...++..+...+..
T Consensus 126 ------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 126 ------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 01137888899999999 99999999887652 2122 23467788888999
Q ss_pred CCChhHHHHHHHHHHhCCCCC-C----chhHHHHHHHhhccccHHHHHHHHHhhhhccCcc------hhhHHHHHHhhhc
Q 047492 654 TKNYDMVVGVMNHLEGHGRQV-T----SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK------ISLLGQLIGVFSG 722 (806)
Q Consensus 654 ~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 722 (806)
.|++++|...+++..+..... + ...+..+...+...|+.++|...++++....+.. ..++..+...|..
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 999999999999887543221 1 2367778888999999999999999987433322 5577889999999
Q ss_pred cccchhhHHHHHHHHHcCCC-CC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----CCCC-ChhhHHHHHhhhhc
Q 047492 723 CIKVSQDIEGLQKMIEQCFP-LD----TYTYNILLRRLSV-SEIDHACELFNRMRRK----GYEP-DQWTFDILKCGLYN 791 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~ 791 (806)
.|++++|+..++++.+.... ++ ..++..+...|.. |++++|...+++..+. |..+ ...++..+..++..
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999999999998874211 12 4577788888888 9999999999987644 2222 23456667777777
Q ss_pred cCCH
Q 047492 792 CLRT 795 (806)
Q Consensus 792 ~g~~ 795 (806)
.|+.
T Consensus 360 ~g~~ 363 (406)
T 3sf4_A 360 LGLS 363 (406)
T ss_dssp HHTT
T ss_pred hhHh
Confidence 6664
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=3e-11 Score=127.34 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-h----hhHHHHHHHHHhcCCcchHHHHHHHHHhcC------CCCccch
Q 047492 135 DTLVMGYALAGKPDIALHLFGKMRFQGMDLD-D----YAYHVLLNALVEQGCFDAVAVVSKQISMRG------FENDVTR 203 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~ 203 (806)
..+...+...|++++|+..|+++.+. .|+ . .+|..+...+...|++++|...+++..... +....++
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34445555666666666666666554 222 1 345555556666666666666666554431 1122355
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhCC-----CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHh
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSGR-----ECVSGFMIGIVVDALCKNSR-----------------FEQAGKLLEDF 261 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 261 (806)
..+...|...|++++|...+++..+.. ......++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 666666666667766666666554321 11223456666667777777 66666666554
Q ss_pred hhC----CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 262 KDR----DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 262 ~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
... .........+..+...+...|++++|++.+++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 321 0011112344555555555666666665555543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=6.5e-11 Score=124.71 Aligned_cols=276 Identities=12% Similarity=-0.041 Sum_probs=177.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047492 449 TYDKFISALCKANKVEVGYLIHSELSRMNKVASE----NTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVI 524 (806)
Q Consensus 449 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 524 (806)
.+..+...+...|++++|...+++..+..+. +. ..|..+...|...|++++|+..+++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3445566777888888888888888776544 33 467888888999999999999998876520
Q ss_pred HHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHC----CCccCcchhHHHHHHHHhh
Q 047492 525 RCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRS----GLVPQLGSNILMLQSYLKR 600 (806)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~~~~~ 600 (806)
...++ .+....++..+...|...|++++|...|++..+. +-.|...
T Consensus 117 ---~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------ 166 (411)
T 4a1s_A 117 ---KSMND---------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG------------ 166 (411)
T ss_dssp ---HHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH------------
T ss_pred ---HHccC---------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH------------
Confidence 00000 0113455777888899999999999999987643 1122211
Q ss_pred hCCCCchhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChh
Q 047492 601 KNGIPRKLYNTLIVGLCKAMK-----------------ANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYD 658 (806)
Q Consensus 601 ~~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~ 658 (806)
.++..+...|...|+ +++|+..+++..+. +-.+ ...++..+...+...|+++
T Consensus 167 ------~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 167 ------RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 247888999999999 99999998886652 1111 2346777888888999999
Q ss_pred HHHHHHHHHHhCCCCC-C----chhHHHHHHHhhccccHHHHHHHHHhhhhccC------cchhhHHHHHHhhhccccch
Q 047492 659 MVVGVMNHLEGHGRQV-T----SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ------SKISLLGQLIGVFSGCIKVS 727 (806)
Q Consensus 659 ~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 727 (806)
+|.+.+++..+..... + ...+..+...+...|+.++|...++++....+ ....++..+...|...|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999988876543211 1 12455555666666666666666666653222 11344555666666666666
Q ss_pred hhHHHHHHHHHcCCC-CC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 728 QDIEGLQKMIEQCFP-LD----TYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 728 ~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
+|+..++++.+.... ++ ..+|..+...|.. |++++|...|++..+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 666666665543100 01 2345555555656 6666666666665543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=4.2e-11 Score=125.94 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD-----DYAYHVLLNALVEQGCFDAVAVVSKQIS 193 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (806)
...+......+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...+++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334444455555556666666666555544 221 1234444445555555555555555443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=1.3e-10 Score=118.47 Aligned_cols=280 Identities=10% Similarity=-0.060 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVAS----ENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIR 525 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (806)
+......+...|++++|...+++..+..+. + ...+..+...+...|++++|...+++..+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 344556677888888888888888776543 3 3567788888999999999999988876510
Q ss_pred HHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCc-cCcchhHHHHHHHHhhhCCC
Q 047492 526 CLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLV-PQLGSNILMLQSYLKRKNGI 604 (806)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~~ 604 (806)
...++ .+....++..+...|...|++++|...+++..+.... ++...
T Consensus 74 --~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 121 (338)
T 3ro2_A 74 --RTIGD---------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------- 121 (338)
T ss_dssp --HHHTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred --hcccc---------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------
Confidence 00000 0112445777888899999999999999987643111 11100
Q ss_pred CchhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhH
Q 047492 605 PRKLYNTLIVGLCKAMK--------------------ANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDM 659 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~ 659 (806)
...++..+...|...|+ +++|...+++..+. +..+ ...++..+...+...|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 01137788889999999 89999888876542 1111 23456777777888888888
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 660 VVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 660 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
|.+.+++..+....... .+....++..+...|...|++++|+..+++..+.
T Consensus 202 A~~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGD-----------------------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTC-----------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-----------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888877543211000 0001123444445555555555555555555432
Q ss_pred CCC-CC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----CCCC-ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 740 CFP-LD----TYTYNILLRRLSV-SEIDHACELFNRMRRK----GYEP-DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 740 ~~~-~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
... ++ ..++..+...|.. |++++|...+++.... +-.+ ...++..+..++.+.|++++|.+++++
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 100 11 3344555555555 6666666655555432 1111 122444555556666666666666554
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=7.8e-11 Score=120.13 Aligned_cols=275 Identities=12% Similarity=-0.012 Sum_probs=138.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCC------CCccc
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDLD-----DYAYHVLLNALVEQGCFDAVAVVSKQISMRGF------ENDVT 202 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~ 202 (806)
+......+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...+++...... ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 334455666677777777777777665 232 24566666667777777777777766554311 12235
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCCCC-C----CHHhHHHHHHHHHhcCC--------------------HHHHHHH
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGREC-V----SGFMIGIVVDALCKNSR--------------------FEQAGKL 257 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~~A~~~ 257 (806)
+..+...+...|++++|.+.+++..+.... + ...++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666666677777777777777665432110 1 12356666666666777 6666666
Q ss_pred HHHhhhC----CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 258 LEDFKDR----DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDM 333 (806)
Q Consensus 258 ~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (806)
+++.... .........+..+...+...|++++|.+.+++........++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------- 219 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------
Confidence 6554321 0001112234444444555555555555554433210000000
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-
Q 047492 334 KEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINSLCGDGSTHEAYEVLKNSIDHG- 407 (806)
Q Consensus 334 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~- 407 (806)
.....++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 220 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 220 -----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 001123444445555555555555555544321 0000 02344555555556666666666655544211
Q ss_pred ---C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047492 408 ---L-FPGKKTLSILADALCRDGKFEQMKDLVIFALER 441 (806)
Q Consensus 408 ---~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (806)
. .....++..+...+...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 001234555556666666666666666665543
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=8.4e-10 Score=110.57 Aligned_cols=215 Identities=10% Similarity=-0.005 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLC-------KAMKA-------NLAWGFMREMRH 634 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~m~~ 634 (806)
++|..+|++.... .|+... .|..++..+. +.|++ ++|..+|++..+
T Consensus 33 ~~a~~~~~~al~~--~p~~~~------------------~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~ 92 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPD------------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 92 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHH------------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--cCCCHH------------------HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH
Confidence 6788899988853 455443 3666666554 45876 899999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhH
Q 047492 635 NGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLL 713 (806)
Q Consensus 635 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 713 (806)
. +.| +...|..+...+.+.|++++|.++++++.+........++..++..+.+.|+.++|...++++....|.+...+
T Consensus 93 ~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 93 T-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp T-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred H-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3 244 55688889999999999999999999998854321112788888888899999999999999988777776666
Q ss_pred HHHHHhhh-ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcC-CCC--ChhhHHHHHhh
Q 047492 714 GQLIGVFS-GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKG-YEP--DQWTFDILKCG 788 (806)
Q Consensus 714 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~ 788 (806)
...+.... ..|+.++|+.+|+++.+. .+.+...|..++..+.. |++++|..+|++..... +.| ....|..++..
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 55544432 369999999999999987 45678889999999988 99999999999999873 455 35678888888
Q ss_pred hhccCCHHHHHHHHHhh
Q 047492 789 LYNCLRTDEAERRLEEM 805 (806)
Q Consensus 789 ~~~~g~~~eA~~~l~~m 805 (806)
+.+.|+.++|..+++++
T Consensus 251 ~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 251 ESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 89999999999988764
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=8.8e-10 Score=100.94 Aligned_cols=170 Identities=15% Similarity=0.018 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047492 341 DGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILAD 420 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 420 (806)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45677778888888888888888888877643 345677788888888888888888888887765433 5666777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047492 421 ALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADI 500 (806)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 500 (806)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.++. +...|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888877765 556777888888888899999999998888887665 77888888899999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q 047492 501 AARLLVEMEENGHKPT 516 (806)
Q Consensus 501 a~~~~~~m~~~~~~p~ 516 (806)
|++.|++..+ +.|+
T Consensus 160 A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHh--CCcc
Confidence 9999998877 3454
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=2.8e-10 Score=121.34 Aligned_cols=201 Identities=11% Similarity=-0.077 Sum_probs=168.5
Q ss_pred hCCCCChhhHHHHHHhhhcCCCh-HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHH
Q 047492 546 SHQETNFQIYNFFIDGAGHVKRP-DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANL 624 (806)
Q Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 624 (806)
...+.+...+..+...|...|++ ++|++.|++..+. .|+... +|..+...|.+.|++++
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~------------------a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVE------------------AWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHHTCHHH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHH------------------HHHHHHHHHHHcCCHHH
Confidence 33445777888899999999999 9999999998854 455432 48899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---------CChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc------
Q 047492 625 AWGFMREMRHNGMYPSMECYEELIKLLCST---------KNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT------ 689 (806)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 689 (806)
|...|++..+ +.|+...+..+..+|... |++++|.+.+++..+... .+...+..+...+...
T Consensus 156 A~~~~~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999998 457778888899999999 999999999999988753 3456777788888888
Q ss_pred --ccHHHHHHHHHhhhhccC---cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH
Q 047492 690 --RDLYEAWIRLRGMLINEQ---SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA 763 (806)
Q Consensus 690 --~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A 763 (806)
|++++|...++++....| .+...+..+..+|...|++++|+..|+++.+. .+.+...+..+...+.. |++++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777 78889999999999999999999999999986 35566678888888888 999999
Q ss_pred HHHHHHH
Q 047492 764 CELFNRM 770 (806)
Q Consensus 764 ~~~~~~m 770 (806)
++.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 8765443
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=9.2e-10 Score=110.27 Aligned_cols=204 Identities=12% Similarity=-0.001 Sum_probs=162.3
Q ss_pred CCChhhHHHHHHhhh-------cCCCh-------HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHH
Q 047492 549 ETNFQIYNFFIDGAG-------HVKRP-------DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIV 614 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 614 (806)
+.++..|..++..+. +.|++ ++|..+|++..+. +.|+... .|..++.
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~------------------~~~~~~~ 107 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNML------------------LYFAYAD 107 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHH------------------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHH------------------HHHHHHH
Confidence 335555555555543 35775 8999999999852 3565543 4888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh-cccc
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPS-ME-CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL-KTRD 691 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 691 (806)
.+.+.|++++|..+|++..+ +.|+ .. .|..+...+.+.|++++|..++++..+.... +...+........ ..|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998 4554 33 7889999999999999999999999887542 3333333322222 3699
Q ss_pred HHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcC-CCC--ChhhHHHHHHHHhh-hcHHHHHHHH
Q 047492 692 LYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC-FPL--DTYTYNILLRRLSV-SEIDHACELF 767 (806)
Q Consensus 692 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~-g~~~~A~~~~ 767 (806)
.++|...++++....|.+...|..++..+.+.|+.++|+.+|+++.+.. .+| ....|..++..... |+.++|..++
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999889999999999999999999999999999999963 355 35688898988888 9999999999
Q ss_pred HHHHHcC
Q 047492 768 NRMRRKG 774 (806)
Q Consensus 768 ~~m~~~g 774 (806)
+++.+..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998763
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=3.9e-10 Score=103.36 Aligned_cols=169 Identities=13% Similarity=0.003 Sum_probs=146.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHH
Q 047492 605 PRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLL 683 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 683 (806)
++.+|..+...|.+.|++++|+..|++.++. .| +...+..+..+|...|++++|...++........ +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 3446999999999999999999999999984 44 6778889999999999999999999999876543 445666677
Q ss_pred HHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHH
Q 047492 684 LHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDH 762 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~ 762 (806)
..+...++.+.+...+.++....|.+...+..+...|...|++++|++.|+++.+. .+.+...|..+..+|.. |++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHH
Confidence 78888999999999999999888999999999999999999999999999999987 35677889999999999 99999
Q ss_pred HHHHHHHHHHcCCCCCh
Q 047492 763 ACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 763 A~~~~~~m~~~g~~p~~ 779 (806)
|++.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999998864 4543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=2.6e-10 Score=121.56 Aligned_cols=211 Identities=8% Similarity=-0.135 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCC-CHHHHH
Q 047492 568 PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKA-NLAWGFMREMRHNGMYP-SMECYE 645 (806)
Q Consensus 568 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p-~~~~~~ 645 (806)
++++...+++... ..|+... .|..+...+...|++ ++|+..|++..+. .| +...|.
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~------------------~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~ 141 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQ------------------ALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHH------------------HHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHH------------------HHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 5666777776653 3343332 488889999999999 9999999999884 44 578899
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc---------ccHHHHHHHHHhhhhccCcchhhHHHH
Q 047492 646 ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT---------RDLYEAWIRLRGMLINEQSKISLLGQL 716 (806)
Q Consensus 646 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l 716 (806)
.+..+|...|++++|.+.+++..+... +...+..+...+... |++++|...++++....|.+...|..+
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTHCK--NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999998764 457888888889999 999999999999999999999999999
Q ss_pred HHhhhcc--------ccchhhHHHHHHHHHcCCC---CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 717 IGVFSGC--------IKVSQDIEGLQKMIEQCFP---LDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 717 ~~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
..+|... |++++|+..|+++.+.. + .+...|..+..+|.. |++++|+..|++..+... -+...+..
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~ 297 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 9999998 99999999999999962 3 478889999999999 999999999999987632 25567888
Q ss_pred HHhhhhccCCHHHHHHHHHh
Q 047492 785 LKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 785 l~~~~~~~g~~~eA~~~l~~ 804 (806)
+..++...|+.++|.+.+.+
T Consensus 298 l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999976554
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=1e-09 Score=114.08 Aligned_cols=163 Identities=9% Similarity=0.010 Sum_probs=82.9
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCc-----chhhHH
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSG----RECV-SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVK-----LEKAYD 275 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 275 (806)
....+...|++++|.+.+++..+. +..+ ...++..+...|...|+++.|...+++........+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776653 1111 234666677777777777777777766543200011 123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHH
Q 047492 276 VWLRNLVRAGRLDLALEFLKSKNSLEGYVPE----VFRFNFLVSRLLKENRLMEVFDLFMDMKEG----QI-SPDGVTMN 346 (806)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~ 346 (806)
.+...|...|++++|++.|++......-.++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5555666666666666666554431100011 123444445555555555555555544431 11 12233444
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
.+...|.+.|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555555555555555443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=9.3e-10 Score=114.38 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=159.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----ChhhHH
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPE----VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQIS-P-----DGVTMN 346 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~-----~~~~~~ 346 (806)
....+...|++++|++.|++........+| ..++..+...+...|++++|...+++..+.-.. + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566778888888888776542111122 346677777788888888888888776653110 1 234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 047492 347 TVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINSLCGDGSTHEAYEVLKNSID-----HGLFPGKKTLS 416 (806)
Q Consensus 347 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 416 (806)
.+...|...|++++|...|++..+. +-.+ ...++..+...|...|++++|.+.+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7778888899999999988886542 1111 124677888889999999999999988876 22122456788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcCCCC-CHHHHHHH
Q 047492 417 ILADALCRDGKFEQMKDLVIFALER----NIKLRDVTYDKFISALCKANK---VEVGYLIHSELSRMNKVA-SENTYIQL 488 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 488 (806)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..+++.. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888899999999999999887653 111222335667778888888 67777776665 2222 33467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047492 489 IHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 489 i~~~~~~~~~~~a~~~~~~m~~ 510 (806)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998865
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=8.5e-11 Score=118.35 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=73.6
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc-------CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC----
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ-------GMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG---- 196 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 196 (806)
+....++..+...|...|++++|+..|+++.+. .......++..+...+...|++++|...+++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777888888888888777652 112233456666666667777777777766665431
Q ss_pred ----CCCccchHHHHHHhhccCCHHHHHHHHHHhHhC------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047492 197 ----FENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSG------RE-CVSGFMIGIVVDALCKNSRFEQAGKLLEDF 261 (806)
Q Consensus 197 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 261 (806)
+....++..+...+...|++++|.+.+++..+. +. .....++..+...+...|++++|++.|++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112234555555555555555555555554432 11 112233444444444455555555444443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.9e-10 Score=115.86 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=74.3
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCc
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSG-------RECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDR------DDVVK 269 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 269 (806)
+..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... ...+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 344444444444444444444444331 11122334444555555555555555555444321 01122
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHhhhhcC-----CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLKSKNSLE-----GYVP-EVFRFNFLVSRLLKENRLMEVFDLFMDMKEG------Q 337 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 337 (806)
...++..+...+...|++++|.+.+++..... +..| ....+..+...+...|++++|..++++..+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 23344444444445555555555444443210 1111 1233444455555555555555555554442 1
Q ss_pred CCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 338 ISP-DGVTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 338 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
..| ...++..+..+|...|++++|.+.|+++.+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 223445555555566666666666655543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=1.8e-08 Score=104.32 Aligned_cols=232 Identities=13% Similarity=-0.036 Sum_probs=116.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCChh----hHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--Cc----cchHHH
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDDY----AYHVLLNALVEQGCFDAVAVVSKQISMRGFE--ND----VTRTIM 206 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~l 206 (806)
....+...|++++|+..+++.....-..+.. +++.+...+...|++++|...+++....... +. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556777777777777765542111211 3444555566677777777777766554221 11 124555
Q ss_pred HHHhhccCCHHHHHHHHHHhHhC----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCc--chhhHHH
Q 047492 207 LKCLCKQKKIDEAVEYFQQLVSG----REC--V-SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDD-VVK--LEKAYDV 276 (806)
Q Consensus 207 i~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~~ 276 (806)
...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++...... ..+ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66666777777777776665532 111 1 223455566666677777777777766543211 001 1234555
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 047492 277 WLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFN-----FLVSRLLKENRLMEVFDLFMDMKEGQISPD---GVTMNTV 348 (806)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l 348 (806)
+...+...|++++|...+++.........+...+. ..+..+...|+.++|...+++.......+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55556666666666666665543111001111111 112234455666666666555543221110 1123344
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 047492 349 LCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 349 l~~~~~~g~~~~a~~~~~~~ 368 (806)
...+...|++++|...++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1e-08 Score=106.20 Aligned_cols=171 Identities=14% Similarity=-0.042 Sum_probs=85.8
Q ss_pred CcchhHHHHHHHHH--HhcCChhhHHHHHHHHhhc--CC--CCChhhHHHHHHHHH--hcCCcchHH---------HHHH
Q 047492 128 YHQVRFNDTLVMGY--ALAGKPDIALHLFGKMRFQ--GM--DLDDYAYHVLLNALV--EQGCFDAVA---------VVSK 190 (806)
Q Consensus 128 ~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~--~~~~~~~a~---------~~~~ 190 (806)
-|+..+-+.|-.+| .+.+++++|..+++++.+. .. .++...|-.++..-. -.+...... +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666676 7788889998888887542 11 122333444443211 122222222 5555
Q ss_pred HHHhcCCCCc-----cchHHHHHHhhccCCHHHHHHHHHHhHhCCCC-C----CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 191 QISMRGFEND-----VTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC-V----SGFMIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 191 ~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
.+.....+.. ..+......+...|++++|...|++..+.... + ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5443221111 11223334455667777777777766543111 1 234556666666667777777666665
Q ss_pred hhhCCCC----Cc-chhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 261 FKDRDDV----VK-LEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 261 ~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
....... .+ ...+++.+...|...|++++|++.|++..
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4432000 11 12344555555555555555555555443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=1.1e-08 Score=105.97 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHH
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRSEF----GLSP-NGIVYNYLINSLCGDGSTHEAYEVLKNSID-----HGLFPGKK 413 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 413 (806)
+++.+..+|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|.+.+++..+ .... ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 3344444444555555555544443321 1000 122444455555555555555555555443 2221 234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcCCCC-CHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNI----KLRDVTYDKFISALCKANK---VEVGYLIHSELSRMNKVA-SENTY 485 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~ 485 (806)
++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++.. +..+ ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 455555555555555555555555544311 1112233344444444555 44555544442 1111 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 486 IQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 486 ~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
..+...|...|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666677777777777777776654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=1.2e-08 Score=93.35 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 344 TMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALC 423 (806)
Q Consensus 344 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 423 (806)
.+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444555555666666666665554432 23455555666666666666666666666655422 24555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAAR 503 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 503 (806)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+..+. +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 6666777776666666553 445566666777777777777777777776665443 56677777777777777777777
Q ss_pred HHHHHHH
Q 047492 504 LLVEMEE 510 (806)
Q Consensus 504 ~~~~m~~ 510 (806)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=5.1e-08 Score=100.80 Aligned_cols=271 Identities=10% Similarity=-0.027 Sum_probs=185.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhccCCcch----hHHHHHHHHHHhcCChhhHHHHHHHHhhcCC-CCCh----hhHH
Q 047492 100 HAIFKLLHCAKLTPLMVDFLENYKKDRYYHQV----RFNDTLVMGYALAGKPDIALHLFGKMRFQGM-DLDD----YAYH 170 (806)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~----~~~~ 170 (806)
......+...|+++.+...++.........+. .+++.+...|...|++++|...+++.....- .++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34445566789999999998887664322222 2566677788889999999999998864311 1122 2356
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCC----C----CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCC----CCHHhH
Q 047492 171 VLLNALVEQGCFDAVAVVSKQISMRGF----E----NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGREC----VSGFMI 238 (806)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 238 (806)
.+...+...|++++|...+++...... + ...++..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677778899999999999998876531 1 1235667888899999999999999987754321 123567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHH-----HHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC--cccHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYD-----VWLRNLVRAGRLDLALEFLKSKNSLEGYVPE--VFRFN 311 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 311 (806)
..+...+...|++++|...+++.............+. ..+..+...|++++|...+++........+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888899999999999999998764311111111122 2334477999999999999988652211111 12456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047492 312 FLVSRLLKENRLMEVFDLFMDMKEG----QISPDG-VTMNTVLCFFCKAGMVDVAIELYKSRSE 370 (806)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 370 (806)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6778889999999999999887642 221122 2455556667778888888887777654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.02 E-value=9.8e-09 Score=93.90 Aligned_cols=164 Identities=18% Similarity=0.055 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+...|++++|+..|+++.+.. ..+..++..+...+...|++++|...++.+.+..+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455566666777777777777777776542 224556666666777777777777777777766555556666666667
Q ss_pred hccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHH
Q 047492 211 CKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLA 290 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (806)
...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++.... .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777766665433 34455666666666666666666666666543 122344555555556666666666
Q ss_pred HHHHHhhh
Q 047492 291 LEFLKSKN 298 (806)
Q Consensus 291 ~~~~~~~~ 298 (806)
.+.++...
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=3.4e-09 Score=117.39 Aligned_cols=162 Identities=10% Similarity=0.009 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH 685 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (806)
.+|+.|...|.+.|++++|+..|++.++ +.| +...|..+..+|.+.|++++|++.+++..+... -+...++.+...
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3699999999999999999999999998 455 577889999999999999999999999988753 345678888899
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC 764 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~ 764 (806)
+...|+.++|...++++....|.+...++.+..+|...|++++|++.|+++.+. .+.+...|..+..++.. |++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 35567889999999999 9999999
Q ss_pred HHHHHHHH
Q 047492 765 ELFNRMRR 772 (806)
Q Consensus 765 ~~~~~m~~ 772 (806)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.01 E-value=1.6e-08 Score=96.19 Aligned_cols=166 Identities=7% Similarity=-0.139 Sum_probs=140.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 605 PRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 605 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
|+..|......+...|++++|+..|++..+....++...+..+..++...|++++|.+.+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 345588899999999999999999999998654467777777899999999999999999999987543 5567788888
Q ss_pred HhhccccHHHHHHHHHhhhhccCcch-------hhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC---hhhHHHHHHH
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKI-------SLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD---TYTYNILLRR 754 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 754 (806)
.+...|+.++|...++++....|.+. .++..+...+...|++++|+..++++.+. .|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 99999999999999999998888877 55788888889999999999999999986 444 5678888888
Q ss_pred Hhh-hcH---------------------------HHHHHHHHHHHHc
Q 047492 755 LSV-SEI---------------------------DHACELFNRMRRK 773 (806)
Q Consensus 755 ~~~-g~~---------------------------~~A~~~~~~m~~~ 773 (806)
|.. |+. ++|+..|++..+.
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 877 777 7777777777764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=6e-09 Score=102.97 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
++..+...|...|++++|..++++..
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555544
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=2.4e-08 Score=110.65 Aligned_cols=163 Identities=14% Similarity=0.017 Sum_probs=87.1
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047492 307 VFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINS 386 (806)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 386 (806)
...|+.+...+.+.|++++|++.|++..+... -+...++.+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44555555666666666666666665555321 134455555555666666666666666555432 2234455555555
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 047492 387 LCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVG 466 (806)
Q Consensus 387 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 466 (806)
|.+.|++++|++.|++..+.... +...|..+..++...|++++|.+.|++.++.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 55556666666555555543322 34455555555555555555555555555543 23344555555555555555555
Q ss_pred HHHHHHH
Q 047492 467 YLIHSEL 473 (806)
Q Consensus 467 ~~~~~~~ 473 (806)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=3.5e-09 Score=104.67 Aligned_cols=165 Identities=13% Similarity=-0.047 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC------CC-CCCchhHHHHHHHhhccccHHHHHHHHHhhhhc--------
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGH------GR-QVTSFIGNTLLLHALKTRDLYEAWIRLRGMLIN-------- 705 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 705 (806)
..++..+...|...|++++|...++++.+. +. .....++..+...+...|+.++|...++++...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334555555555555555555555555433 11 112334444555555555555555555555422
Q ss_pred cCcchhhHHHHHHhhhccccchhhHHHHHHHHHc------CCCC-ChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc----
Q 047492 706 EQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ------CFPL-DTYTYNILLRRLSV-SEIDHACELFNRMRRK---- 773 (806)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~---- 773 (806)
.+....++..+...|...|++++|+..++++.+. +..| ...++..+...|.. |++++|...+++....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1333444555555566666666666666655543 0011 23345555555555 6666666655555532
Q ss_pred --------------------------------------------CCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 774 --------------------------------------------GYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 774 --------------------------------------------g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
.......++..+..++.+.|++++|.+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11123346778999999999999999999864
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.91 E-value=1.1e-07 Score=90.45 Aligned_cols=199 Identities=10% Similarity=-0.013 Sum_probs=90.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047492 309 RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLC 388 (806)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 388 (806)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|.+.|++..+.. +.+...|..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3334444444455555555555544443322344444444455555555555555555554432 122334455555555
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 047492 389 GDGSTHEAYEVLKNSIDHGLFPGK-------KTLSILADALCRDGKFEQMKDLVIFALERNIKL--RDVTYDKFISALCK 459 (806)
Q Consensus 389 ~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 459 (806)
..|++++|.+.+++..+.... +. ..|..+...+...|++++|.+.++++.+.. +. +...+..+..+|..
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHH
Confidence 555555555555555543211 22 234444455555566666666666555432 11 23344444444443
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALH 520 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (806)
.| ..+++.+...... +...|.... ....+.+++|+..+++..+ +.|+....
T Consensus 166 ~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~ 216 (228)
T 4i17_A 166 NG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEI 216 (228)
T ss_dssp HH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHH
Confidence 32 2223333333222 233332222 2233446667777766665 34544433
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.8e-06 Score=83.21 Aligned_cols=184 Identities=8% Similarity=-0.077 Sum_probs=123.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 326 VFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL-SPNGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 326 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
++..|++....+ .++..++..+..++...|++++|++++.+..+.|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 34555566777788888888888888888766542 1355677777888888888888888888887
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 405 DHGLFP-----GKKTLSILADALC--RDG--KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 405 ~~~~~p-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
+. .| +..+...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2455556665532 223 788888888887654 34433344455578888888888888876654
Q ss_pred cCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 476 MNK---------VASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 476 ~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
..+ ..|+.++..+|......|+ +|.+++.++++ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 310 1256666455555555666 77888888887 455543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=5.8e-07 Score=86.70 Aligned_cols=78 Identities=6% Similarity=0.078 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 185 VAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRE-CVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
|+..++++...+.++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444433333333334444444445555555555554443332 1233344444444555555555555555444
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.82 E-value=5.3e-08 Score=96.40 Aligned_cols=168 Identities=10% Similarity=-0.029 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--C----ccchHHHHHHhhcc-CCHHHHHHHHHHhHhCCCCC-----CH
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFE--N----DVTRTIMLKCLCKQ-KKIDEAVEYFQQLVSGRECV-----SG 235 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-----~~ 235 (806)
+|+.+..+|...|++++|+..|++....... + ..++..+...|... |++++|...|++..+..... ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444444444444444444444333210 0 12445555555554 66666666655554321100 02
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcch-----hhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcc--
Q 047492 236 FMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLE-----KAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVF-- 308 (806)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 308 (806)
.+++.+...+.+.|++++|+..|++......-.+.. ..|..+..++...|++++|+..|++..+...-.++..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345566666666666666666666655431111111 1345555566666666666666666543111111111
Q ss_pred -cHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 047492 309 -RFNFLVSRLL--KENRLMEVFDLFMDMKE 335 (806)
Q Consensus 309 -~~~~li~~~~--~~~~~~~a~~~~~~m~~ 335 (806)
.+..++.++. ..+++++|+..|+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 2333444443 34556666666665543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=1.7e-07 Score=92.68 Aligned_cols=208 Identities=10% Similarity=-0.065 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcC----CC--CccchHHHHHHhhccCCHHHH
Q 047492 146 KPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRG----FE--NDVTRTIMLKCLCKQKKIDEA 219 (806)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~a 219 (806)
++++|...|++. ...|...|++++|...|++..... .+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 224556677777777776665542 11 134677788888888888888
Q ss_pred HHHHHHhHhCCCC---C--CHHhHHHHHHHHHhc-CCHHHHHHHHHHhhhCC---CCCcc-hhhHHHHHHHHHHcCCHHH
Q 047492 220 VEYFQQLVSGREC---V--SGFMIGIVVDALCKN-SRFEQAGKLLEDFKDRD---DVVKL-EKAYDVWLRNLVRAGRLDL 289 (806)
Q Consensus 220 ~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~ 289 (806)
...+++..+.... + -..+++.+...|... |++++|+..|++..... +..+. ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888776643211 1 134677778888885 88888888887765420 11111 3467777888888888888
Q ss_pred HHHHHHhhhhcCCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHH--HcC
Q 047492 290 ALEFLKSKNSLEGYVPEVF-----RFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDG------VTMNTVLCFFC--KAG 356 (806)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~--~~g 356 (806)
|+..|++......-.+... .|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 8888888765322122211 4566667777888888888888877653 2321 12344455553 345
Q ss_pred ChHHHHHHHHHHHh
Q 047492 357 MVDVAIELYKSRSE 370 (806)
Q Consensus 357 ~~~~a~~~~~~~~~ 370 (806)
++++|...|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 57777777766543
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.78 E-value=1.7e-07 Score=91.12 Aligned_cols=185 Identities=9% Similarity=-0.023 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CchhHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV--TSFIGNT 681 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 681 (806)
.+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..+|...|++++|...++...+..+.. ....+..
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4667888899999999999999999984 332 5677888899999999999999999999875422 2345666
Q ss_pred HHHHhhc--------cccHHHHHHHHHhhhhccCcchhhH-----------------HHHHHhhhccccchhhHHHHHHH
Q 047492 682 LLLHALK--------TRDLYEAWIRLRGMLINEQSKISLL-----------------GQLIGVFSGCIKVSQDIEGLQKM 736 (806)
Q Consensus 682 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~ 736 (806)
+...+.. .|+..+|...++++....|.+.... ..+...|...|++++|+..|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777778 9999999999999998888777666 55688899999999999999999
Q ss_pred HHcCCCCC----hhhHHHHHHHHh----------h-hcHHHHHHHHHHHHHcCCCCCh----hhHHHHHhhhhccCCHHH
Q 047492 737 IEQCFPLD----TYTYNILLRRLS----------V-SEIDHACELFNRMRRKGYEPDQ----WTFDILKCGLYNCLRTDE 797 (806)
Q Consensus 737 ~~~~~~~~----~~~~~~li~~~~----------~-g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~e 797 (806)
.+.. |+ ...+..+..+|. . |++++|+..|+++.+.. |+. .....+...+.+.|+.++
T Consensus 175 l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHHHHhhh
Confidence 9863 33 345667777775 4 78899999999998763 443 233444444455555444
Q ss_pred H
Q 047492 798 A 798 (806)
Q Consensus 798 A 798 (806)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 3
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=3.3e-07 Score=78.29 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
|..+...+...|++++|.++++++.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 34444445555555555555555544322 134444555555555555555555555555443 3344455555666666
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666554433 455566666666666666666666666654
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=3.9e-07 Score=86.14 Aligned_cols=179 Identities=6% Similarity=-0.024 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc--hhHHHHH
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMY-P-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTS--FIGNTLL 683 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~ 683 (806)
.+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..++.+.+..+.... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3666778899999999999999999984221 2 1356777888999999999999999999887654332 1333333
Q ss_pred HHhhc------------------cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh
Q 047492 684 LHALK------------------TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT 745 (806)
Q Consensus 684 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 745 (806)
..+.. .|+.++|...++++....|.+...+.++..... +.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~-------- 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA-------- 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH--------
Confidence 33332 456666666666666555555444332111000 000000
Q ss_pred hhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC--hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 746 YTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD--QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 746 ~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.....+...|.. |++++|+..|+++.+.-.... ...+..+..++.+.|++++|.+.++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 001223444555 666666666666665421111 13455566666666666666666654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.75 E-value=2.1e-07 Score=79.51 Aligned_cols=129 Identities=19% Similarity=0.106 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhc
Q 047492 133 FNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCK 212 (806)
Q Consensus 133 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 212 (806)
.|..+...+...|++++|+.+|+++.+.+ ..+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35556666777777777777777776542 22455666666666667777777777777666655555566666666666
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047492 213 QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKD 263 (806)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 263 (806)
.|++++|.++++.+.+... .+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6667777666666665432 2345555666666666666666666665543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=1.9e-07 Score=104.17 Aligned_cols=183 Identities=13% Similarity=-0.043 Sum_probs=150.6
Q ss_pred HhcCChHHHHHHHHHHHh------CCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc
Q 047492 617 CKAMKANLAWGFMREMRH------NGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT 689 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~------~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 689 (806)
...|++++|+..+++..+ ....| +...+..+..++...|++++|.+.++++.+.+. .+...+..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 789999999999999981 01334 566788888999999999999999999988753 3456778888889999
Q ss_pred ccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHH
Q 047492 690 RDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFN 768 (806)
Q Consensus 690 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~ 768 (806)
|++++|...|+++....|.+...+..+..+|...|++++ ++.|+++.+. .+.+...|..+..++.. |++++|+..|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999997 35567889999999999 99999999999
Q ss_pred HHHHcCCCCC-hhhHHHHHhhhhccCC--------HHHHHHHHHh
Q 047492 769 RMRRKGYEPD-QWTFDILKCGLYNCLR--------TDEAERRLEE 804 (806)
Q Consensus 769 ~m~~~g~~p~-~~~~~~l~~~~~~~g~--------~~eA~~~l~~ 804 (806)
+..+. .|+ ...+..+..++...|+ +++|.+.+++
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 88754 454 4567778888877554 6677766654
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=6e-07 Score=83.55 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCCC-hhhHHH----------------HHHHHHhcCCcchHHHHHHHHHhcCCCCc
Q 047492 138 VMGYALAGKPDIALHLFGKMRFQGMDLD-DYAYHV----------------LLNALVEQGCFDAVAVVSKQISMRGFEND 200 (806)
Q Consensus 138 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (806)
...+...|++++|+..|++..+. .|+ ...|.. +..++.+.|++++|+..|++..+..+.+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 34455666666666666666554 332 223333 55555566666666666666666555555
Q ss_pred cchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 047492 201 VTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKN 248 (806)
Q Consensus 201 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (806)
.++..+..++...|++++|...|++.++..+ .+..++..+...|...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 5666666666666666666666666655443 2344555555555443
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=1.8e-05 Score=84.02 Aligned_cols=182 Identities=11% Similarity=-0.049 Sum_probs=117.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC---------CC---C
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGR---------QV---T 675 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~---~ 675 (806)
.|...+.-+.+.|+.++|..++++.... |....+.. .|+.....++. ++.+.+.-. .+ .
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhccccc
Confidence 3767777788899999999999999986 54332211 22222222222 222222110 01 1
Q ss_pred chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc-cchhhHHHHHHHHHcCCCCChhhHHHHHHH
Q 047492 676 SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI-KVSQDIEGLQKMIEQCFPLDTYTYNILLRR 754 (806)
Q Consensus 676 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 754 (806)
..+|...+....+.++.+.|..++..+ ...+....+|-..+..-..++ +.+.|..+|+...+. .+.+...|...++-
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 133444445555678899999999999 322233344443333333344 699999999999986 34445566777776
Q ss_pred Hhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 755 LSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 755 ~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
... |+.+.|..+|+++. .....|..++.--...|+.+.+.++++++
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667 99999999999872 25667777777667789999999888764
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=8.2e-07 Score=83.91 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHHHHHhhccccHHHHHHHHHhhhhccCcchh---hHHH
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKIS---LLGQ 715 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 715 (806)
...+..+...+...|++++|...++.+.+...... ...+..+...+.+.|+.++|...++++....|.+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778889999999999999887644322 235666777888888888888888888876666554 3444
Q ss_pred HHHhhhc------------------cccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC
Q 047492 716 LIGVFSG------------------CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYE 776 (806)
Q Consensus 716 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~ 776 (806)
+..+|.. .|+.++|+..|+++.+. .|.+...+......-.. +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~~~~a~~a~~~l~~~~~~~~~-------------- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAK-------------- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHH--------------
Confidence 4444432 45666666666666654 22222222221111110 11100
Q ss_pred CChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 777 PDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
....+...+.+.|++++|+..++++
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGM 173 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 1124567788999999999998875
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=2.4e-05 Score=83.00 Aligned_cols=374 Identities=7% Similarity=-0.071 Sum_probs=196.2
Q ss_pred CcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCC-hhhHHHHHHHHhhc-CCCC-Chhh
Q 047492 92 FHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGK-PDIALHLFGKMRFQ-GMDL-DDYA 168 (806)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~~p-~~~~ 168 (806)
..+....|...+..+.. ++++.+..+++..... .|++..|...+....+.+. .+....+|+..... |..| +...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 55667777777777765 6677777777777663 3577777777776666553 34566677766543 4322 4455
Q ss_pred HHHHHHHHH----hcCCcchHHHHHHHHHhcCCCCcc-chHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 047492 169 YHVLLNALV----EQGCFDAVAVVSKQISMRGFENDV-TRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVD 243 (806)
Q Consensus 169 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (806)
|...+..+. ..++.+.+..+|+........+.. .|..... +........+..+..+.
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~----------------- 149 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDT----------------- 149 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHH-----------------
Confidence 555555433 234566677777777653111111 1111111 01111111122221111
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcC--C-----HHHHHHHHHhhhhcCCCCCCcccHHHHHHH
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAG--R-----LDLALEFLKSKNSLEGYVPEVFRFNFLVSR 316 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 316 (806)
.+.+..|..+++.+... -...+...|...+.--...+ - .+.+..+|+++... ++.+...|-..+..
T Consensus 150 ----~~~y~~ar~~y~~~~~~-~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 150 ----LPIFQSSFQRYQQIQPL-IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEY 222 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHH-HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 11223333333333221 00012224444333322110 0 23456677766642 23335556666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC---------CCCC---CHHHHHHHH
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEF---------GLSP---NGIVYNYLI 384 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~---~~~~~~~li 384 (806)
+.+.|+.+.|..++++.... |+...+.. .|....+.++. ++.+.+. +..+ ....|...+
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 77788888888888887776 33322211 22222222221 2222211 0001 124566666
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 385 NSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCR-DGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
....+.+..+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.. +-+...+...++...+.|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 6666677888888888888 321 2244444322222112 236888888888887753 33345556667777788888
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 371 ~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888887621 466777777777777888888888887764
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=6.5e-06 Score=80.39 Aligned_cols=216 Identities=7% Similarity=0.071 Sum_probs=160.0
Q ss_pred CCChhhHHHHHHhhhcCC--ChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHH----Hhc---
Q 047492 549 ETNFQIYNFFIDGAGHVK--RPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGL----CKA--- 619 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 619 (806)
+.+..+|+.--..+...| +++++++.++.+... .|...+ +|+.-...+ ...
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~------------------aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQ------------------IWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCH------------------HHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHH------------------HHHHHHHHHHHHHHhcccc
Confidence 334555666666666777 999999999999854 566655 365555554 444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh--HHHHHHHHHHhCCCCCCchhHHHHHHHhhcccc------
Q 047492 620 MKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYD--MVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRD------ 691 (806)
Q Consensus 620 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 691 (806)
+++++++.+++.+.+.. +-+..+|..-..++.+.|.++ ++++.++++.+.++. +-..++.-.......++
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999842 337778888888888899988 999999999987643 33344444444445555
Q ss_pred HHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhH-HHHHHHHHcC--CCCChhhHHHHHHHHhh-hcHHHHHHHH
Q 047492 692 LYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI-EGLQKMIEQC--FPLDTYTYNILLRRLSV-SEIDHACELF 767 (806)
Q Consensus 692 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~--~~~~~~~~~~li~~~~~-g~~~~A~~~~ 767 (806)
+++++..+.++....|.+...|+.+...+.+.|+...++ +..+++.+.+ .+.++..+..+..+|.. |+.++|++++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999999999999999999999999998888865544 4666655532 24567889999999999 9999999999
Q ss_pred HHHHHcCCCC-ChhhHHHHHh
Q 047492 768 NRMRRKGYEP-DQWTFDILKC 787 (806)
Q Consensus 768 ~~m~~~g~~p-~~~~~~~l~~ 787 (806)
+.+.+. +.| ....|...+.
T Consensus 282 ~~l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHhc-cChHHHHHHHHHHh
Confidence 999864 333 3344544433
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=1.1e-06 Score=81.70 Aligned_cols=131 Identities=11% Similarity=-0.072 Sum_probs=90.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047492 383 LINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK 462 (806)
Q Consensus 383 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 462 (806)
+..+|.+.|++++|+..|++..+.... +...+..+...+...|++++|...|+++++.. +.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 777788888888888888888876433 67778888888888888888888888888875 4566777777777765543
Q ss_pred h--hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 047492 463 V--EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRAL 519 (806)
Q Consensus 463 ~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (806)
. +.+...++... .+.|....+.....++...|++++|+..|++.++ +.|+...
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 3 33444444442 1222223344455666778889999999998887 5676543
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.63 E-value=2.1e-06 Score=83.38 Aligned_cols=186 Identities=10% Similarity=-0.093 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcc---hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCC-CC-ChhhH
Q 047492 95 TRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQ---VRFNDTLVMGYALAGKPDIALHLFGKMRFQGM-DL-DDYAY 169 (806)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~ 169 (806)
+...+......+.+.|+++.|...++.+.... +.+ ...+..+..+|.+.|++++|+..|++..+... .| ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555556666667777777777777766642 222 55666666677777777777777777765411 11 12345
Q ss_pred HHHHHHHHh--------cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHH
Q 047492 170 HVLLNALVE--------QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIV 241 (806)
Q Consensus 170 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (806)
..+..++.. .|++++|...|+++.+..+.+......+.......+ .. ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~----------~~--------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA----------KL--------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH----------HH--------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH----------HH--------HHHHHHH
Confidence 555555656 667777777777776665544443322110000000 00 0012334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCc-chhhHHHHHHHHHHc----------CCHHHHHHHHHhhhh
Q 047492 242 VDALCKNSRFEQAGKLLEDFKDRDDVVK-LEKAYDVWLRNLVRA----------GRLDLALEFLKSKNS 299 (806)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~ 299 (806)
...|.+.|++++|+..|+.+.......+ ....+..+..+|... |++++|+..|+++..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 5555556666666666665554311111 223445555555543 555666666665554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=2.4e-07 Score=83.72 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
.+..+...+.+.|++++|...|++..+. .| +...+..+..++...|++++|...++....... ++..........
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 3667777788888888888888877662 33 456677777888888888888888877765443 222221111000
Q ss_pred hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHH
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACE 765 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~ 765 (806)
+...++..+|+..++++.+. .|.+...+..+...+.. |++++|..
T Consensus 84 ---------------------------------~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 84 ---------------------------------LHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp ---------------------------------HHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------HHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 01112223355666666654 23345566666666666 66666666
Q ss_pred HHHHHHHcCCCC-ChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 766 LFNRMRRKGYEP-DQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 766 ~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
.|+++.+....+ +...+..+..++...|+.++|...+++
T Consensus 130 ~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 130 LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 666666543322 234555566666666666666666554
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=8.5e-07 Score=87.29 Aligned_cols=164 Identities=16% Similarity=0.024 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHH
Q 047492 639 PSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIG 718 (806)
Q Consensus 639 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 718 (806)
.+...+..+...+...|++++|...+++..+.... +...+..+...+...|+.++|...++++....|...........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34455666777778888888888888888776533 34566667778888888888888888887766644444444444
Q ss_pred hhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCC-ChhhHHHHHhhhhccCCHH
Q 047492 719 VFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEP-DQWTFDILKCGLYNCLRTD 796 (806)
Q Consensus 719 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 796 (806)
.+...++.++|+..++++.+. .|.+...+..+...+.. |++++|+..|.++.+..... +...+..++.+|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 567778888899999998887 35667888888888888 99999999999988764332 3567888889999999999
Q ss_pred HHHHHHHh
Q 047492 797 EAERRLEE 804 (806)
Q Consensus 797 eA~~~l~~ 804 (806)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 98887764
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=6.2e-07 Score=88.28 Aligned_cols=166 Identities=8% Similarity=-0.052 Sum_probs=112.7
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHH-hHHHHHH
Q 047492 165 DDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGF-MIGIVVD 243 (806)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~ 243 (806)
+...+..+...+...|++++|...|++..+..+.+...+..+...+...|++++|...++......+ +.. .......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHH
Confidence 3445666666677777888888888877777777777777777777888888888888777765543 322 2222233
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCH
Q 047492 244 ALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRL 323 (806)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 323 (806)
.+...++.++|...|++.... .+.+...+..+...+...|++++|++.|.++.....-..+...+..+...+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 355667777777777776653 234556777777777888888888888887776432223356677777888888887
Q ss_pred HHHHHHHHHHH
Q 047492 324 MEVFDLFMDMK 334 (806)
Q Consensus 324 ~~a~~~~~~m~ 334 (806)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776544
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=5.4e-07 Score=81.30 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=105.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHH-HH
Q 047492 99 FHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNA-LV 177 (806)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 177 (806)
+......+.+.|+++.|...++..... .|.+...+..+...|...|++++|+..|++.... .|++..+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 444556667778888888877776553 2446677777778888888888888888877655 3333322222111 12
Q ss_pred hcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHH
Q 047492 178 EQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV-SGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
..+....|...++...+..+.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333456777777777766667777777777777777777777777777765533 34566777777777777777777
Q ss_pred HHHHhh
Q 047492 257 LLEDFK 262 (806)
Q Consensus 257 ~~~~~~ 262 (806)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=2.7e-06 Score=79.26 Aligned_cols=160 Identities=11% Similarity=0.005 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----ChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTK----NYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|.+.+++..+.+ ++..+..+..
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 7788888999999999999999999865 56677777777777 6 8999999999998775 4556677777
Q ss_pred Hhhc----cccHHHHHHHHHhhhhccCc--chhhHHHHHHhhhc----cccchhhHHHHHHHHHcCCCCChhhHHHHHHH
Q 047492 685 HALK----TRDLYEAWIRLRGMLINEQS--KISLLGQLIGVFSG----CIKVSQDIEGLQKMIEQCFPLDTYTYNILLRR 754 (806)
Q Consensus 685 ~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 754 (806)
.+.. .++..+|...++++....+. ....+..|...|.. .++.++|+..|++..+. +.+...+..|...
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 7776 78999999999999876653 36778888888887 78999999999999986 3466678888888
Q ss_pred Hhh--h-----cHHHHHHHHHHHHHcCCCC
Q 047492 755 LSV--S-----EIDHACELFNRMRRKGYEP 777 (806)
Q Consensus 755 ~~~--g-----~~~~A~~~~~~m~~~g~~p 777 (806)
|.. | ++++|+..|++..+.|...
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 876 4 8999999999998887543
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=3.3e-07 Score=80.01 Aligned_cols=138 Identities=12% Similarity=-0.007 Sum_probs=73.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047492 354 KAGMVDVAIELYKSRSEFGLSPN-GIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMK 432 (806)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (806)
..|++++|+..++..... .|+ ...+-.+...|.+.|++++|++.|++..+.... +..+|..+..++...|++++|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 345555555555554432 121 223344555566666666666666665554322 4555556666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 433 DLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLI-HSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
..|+...+.. +-+...+..+...|.+.|+.++|.+. ++...+..+. ++..|......+...|
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666665554 33455566666666666666554433 3555554443 5555555555554444
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.56 E-value=9.3e-07 Score=98.64 Aligned_cols=174 Identities=9% Similarity=-0.099 Sum_probs=133.4
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 318 LKENRLMEVFDLFMDMK--------EGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
...|++++|++.+++.. +. .+.+...+..+..+|.+.|++++|.+.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999998887 32 12356677778888888999999999998887643 3466788888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047492 390 DGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLI 469 (806)
Q Consensus 390 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 469 (806)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988876433 56778888888888899988 88888888876 55667888888889999999999998
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 047492 470 HSELSRMNKVASENTYIQLIHGFNKSNR 497 (806)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~li~~~~~~~~ 497 (806)
|++..+.++. +...|..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8888766544 45667777777665554
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.56 E-value=4.1e-05 Score=74.71 Aligned_cols=152 Identities=7% Similarity=-0.027 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC------
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVE--VGYLIHSELSRMNKVASENTYIQLIHGFNKSNR------ 497 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 497 (806)
++++++.++++.+.+.. +-+..+|+.-...+.+.|.++ ++.+.++.+.+.++. |...|+.-...+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34444444444444433 333344444333344444444 444444444444443 44444444444444333
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhC---CCCChhhHHHHHHhhhcCCChHHHHHH
Q 047492 498 ADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSH---QETNFQIYNFFIDGAGHVKRPDLARAV 574 (806)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 574 (806)
++++++.+++++.. -.-|...++..-..+...+.....+..+....... ...++..+..+.+.|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~-~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVK-CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44555555554442 11122233333333333333333333333222211 245667788899999999999999999
Q ss_pred HHHHHH
Q 047492 575 YELMQR 580 (806)
Q Consensus 575 ~~~m~~ 580 (806)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=7.9e-07 Score=88.64 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-----Cchh
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-----TSFI 678 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ 678 (806)
|......|...|++++|...|.+..+. |-.+ -..+|..+..+|...|++++|...+++..+..... ...+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666677788899999999999987762 2111 14478888889999999999999998876542211 1345
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCc------chhhHHHHHHhhhccccchhhHHHHHHHHHcCCC-CC----hhh
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQS------KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP-LD----TYT 747 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 747 (806)
++.+...+.. |++++|...++++....+. ...+++.+...|...|++++|+..++++.+.... ++ ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 6677777878 9999999999998743332 2467888999999999999999999999874211 11 225
Q ss_pred HHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCCh------hhHHHHHhhhhccCCHHHHHH
Q 047492 748 YNILLRRLSV-SEIDHACELFNRMRRKGYEPDQ------WTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 748 ~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+..+..++.. |++++|...|++.. . .|+. .....++.++ ..|+.+++.+
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6666777777 99999999999988 3 3322 1344455555 6788777766
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.53 E-value=2.6e-07 Score=80.67 Aligned_cols=121 Identities=8% Similarity=-0.101 Sum_probs=60.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHH
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLY 693 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 693 (806)
.+...|++++|+..++.... ..| +...+..+...|...|++++|++.+++..+... .+...+..+...+...|+.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34445566666666665543 222 223344455566666666666666666655432 23334444444445555555
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHH-HHHHHH
Q 047492 694 EAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEG-LQKMIE 738 (806)
Q Consensus 694 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 738 (806)
+|...++++....|.+..++..+...|.+.|+.++|.+. ++++.+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555444444444555555555555554444333 244444
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.49 E-value=1.4e-05 Score=74.49 Aligned_cols=176 Identities=12% Similarity=-0.002 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----ChhHHHHHH
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDG----STHEAYEVL 400 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 400 (806)
+|++.|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45556666666666667777777776666643 44555555555555 4 667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 047492 401 KNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERNIK-LRDVTYDKFISALCK----ANKVEVGYLIHS 471 (806)
Q Consensus 401 ~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 471 (806)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .....+..|...|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666553 44555555555555 56677777777766655411 014556666666666 666777777777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 047492 472 ELSRMNKVASENTYIQLIHGFNKS-N-----RADIAARLLVEMEENG 512 (806)
Q Consensus 472 ~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~ 512 (806)
...+.+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 766551 1344555566666543 2 6777777777777655
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.47 E-value=3.8e-06 Score=92.07 Aligned_cols=164 Identities=10% Similarity=-0.107 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 047492 320 ENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEV 399 (806)
Q Consensus 320 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 399 (806)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887753 2357788888899999999999999999988754 34577888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhhc
Q 047492 400 LKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKA---NKVEVGYLIHSELSRM 476 (806)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 476 (806)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876433 67788889999999999999999999988875 45677888899999999 9999999999998887
Q ss_pred CCCCCHHHHHHH
Q 047492 477 NKVASENTYIQL 488 (806)
Q Consensus 477 ~~~~~~~~~~~l 488 (806)
++. +...|..+
T Consensus 158 ~p~-~~~~~~~l 168 (568)
T 2vsy_A 158 GVG-AVEPFAFL 168 (568)
T ss_dssp TCC-CSCHHHHT
T ss_pred CCc-ccChHHHh
Confidence 765 33344433
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.45 E-value=1.3e-06 Score=87.19 Aligned_cols=186 Identities=10% Similarity=-0.033 Sum_probs=134.4
Q ss_pred cCChHHHHHHHHHHHhC------CCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-----CchhHHHHH
Q 047492 619 AMKANLAWGFMREMRHN------GMYPSM----ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQV-----TSFIGNTLL 683 (806)
Q Consensus 619 ~~~~~~A~~~~~~m~~~------g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~ 683 (806)
.|++++|.+++++..+. ++.++. ..|......|...|++++|.+.+.+..+..... -...++.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777665541 112332 256666777889999999999998876543211 134677777
Q ss_pred HHhhccccHHHHHHHHHhhhhcc-----C-cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-----hhhHHHHH
Q 047492 684 LHALKTRDLYEAWIRLRGMLINE-----Q-SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-----TYTYNILL 752 (806)
Q Consensus 684 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li 752 (806)
..+...|++.+|...++++.... + ....+++.+...|.. |++++|+..++++.+.....+ ..+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 88888999999999999887321 1 224577888999988 999999999999987521111 45788888
Q ss_pred HHHhh-hcHHHHHHHHHHHHHc----CCCCCh-hhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 753 RRLSV-SEIDHACELFNRMRRK----GYEPDQ-WTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
..|.. |++++|+..|++.... +..+.. .++..++.++...|++++|.+.+++-
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999 9999999999998864 222222 25666777788889999999999864
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=9.6e-06 Score=80.16 Aligned_cols=175 Identities=7% Similarity=-0.082 Sum_probs=112.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047492 556 NFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN 635 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 635 (806)
...+..+...|++++|..++++..+.. +........+. .+..+...+...|++++|+..|++..+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQ------------WQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHH------------HHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHH------------HHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 334677888999999999999988632 22211110000 1445777777888999999999999874
Q ss_pred CCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 636 GMY-PS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 636 g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
... ++ ..+++.+..+|...|++++|...++++.+.-.. .....+...
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~ 196 (293)
T 3u3w_A 145 QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA----------------------------LHDNEEFDV 196 (293)
T ss_dssp CCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------SSCCHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------------------------cccchhHHH
Confidence 222 22 236888888999999999999999888642100 000011122
Q ss_pred hhHHHHHHhhhccccchhhHHHHHHHHHcC----CCCC-hhhHHHHHHHHhh-h-cHHHHHHHHHHHHH
Q 047492 711 SLLGQLIGVFSGCIKVSQDIEGLQKMIEQC----FPLD-TYTYNILLRRLSV-S-EIDHACELFNRMRR 772 (806)
Q Consensus 711 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~li~~~~~-g-~~~~A~~~~~~m~~ 772 (806)
.++..+...|.+.|++++|+..++++.+.. ..+. ..+|..+..+|.. | .+++|.+.|++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 355666777777777777777777666531 1111 4567777777777 7 45777777776653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=1.1e-05 Score=79.68 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=107.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHh
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNG-MYPSM----ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHA 686 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 686 (806)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...+++..+.........
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-------- 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-------- 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--------
Confidence 3556667777777777777776531 11221 1222344455556677777777777665332211110
Q ss_pred hccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc-----CCCCC-hhhHHHHHHHHhh-hc
Q 047492 687 LKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ-----CFPLD-TYTYNILLRRLSV-SE 759 (806)
Q Consensus 687 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~-g~ 759 (806)
....+++.+...|...|++++|+..++++.+. +..+. ..+|..+...|.. |+
T Consensus 153 ---------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 153 ---------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 01235677778888888888888888888741 11122 3478888999999 99
Q ss_pred HHHHHHHHHHHHHc----CCCCC-hhhHHHHHhhhhccCC-HHHHHHHHHh
Q 047492 760 IDHACELFNRMRRK----GYEPD-QWTFDILKCGLYNCLR-TDEAERRLEE 804 (806)
Q Consensus 760 ~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~-~~eA~~~l~~ 804 (806)
+++|+..+++..+. +..+. ..++..+..++.+.|+ +++|.+.+++
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 99999999987753 22222 5678889999999995 6999998875
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.41 E-value=5.8e-06 Score=90.60 Aligned_cols=154 Identities=10% Similarity=-0.093 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHH
Q 047492 284 AGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIE 363 (806)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 363 (806)
.|++++|++.|++..+. .+.+...+..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 57899999999988652 123467788888999999999999999999988642 367788899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 047492 364 LYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD---GKFEQMKDLVIFALE 440 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 440 (806)
.|++..+.. +.+...+..+...|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988754 346788999999999999999999999999876433 677888899999999 999999999999988
Q ss_pred CC
Q 047492 441 RN 442 (806)
Q Consensus 441 ~~ 442 (806)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.39 E-value=6.6e-06 Score=76.87 Aligned_cols=127 Identities=10% Similarity=-0.080 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.+++..+... .+...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 4556677788888899988888776 356778888888888888888888888888877642 34456666677777
Q ss_pred ccccHHHHHHHHHhhhhccCcch----------------hhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKI----------------SLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
..|+.++|...++++....+.+. .++..+..+|...|++++|+..++++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777777776555444 56666777777777777777777777764
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=1.8e-06 Score=79.99 Aligned_cols=120 Identities=8% Similarity=-0.113 Sum_probs=61.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----CCchhHHHHHHHhhcccc
Q 047492 617 CKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ-----VTSFIGNTLLLHALKTRD 691 (806)
Q Consensus 617 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 691 (806)
...|++++|.++++.+.. .......++..+...+...|++++|...+++....... .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888888885555543 12234566777777788888888888888777652111 112333444444555555
Q ss_pred HHHHHHHHHhhhhc---cC----cchhhHHHHHHhhhccccchhhHHHHHHHH
Q 047492 692 LYEAWIRLRGMLIN---EQ----SKISLLGQLIGVFSGCIKVSQDIEGLQKMI 737 (806)
Q Consensus 692 ~~~a~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 737 (806)
.++|...++++... .+ ....++..+...|...|++++|+..+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555554421 11 112233444444444455555555544444
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=9.8e-07 Score=76.50 Aligned_cols=101 Identities=11% Similarity=-0.092 Sum_probs=82.1
Q ss_pred hhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 047492 677 FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLS 756 (806)
Q Consensus 677 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 756 (806)
..+..+...+.+.|++++|...++.+....|.+...|..+..+|...|++++|+..|+++.+. .|.+...|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHH
Confidence 345666677888889999999999888888888888888888888889999999999988886 3556778888888888
Q ss_pred h-hcHHHHHHHHHHHHHcCCCCChh
Q 047492 757 V-SEIDHACELFNRMRRKGYEPDQW 780 (806)
Q Consensus 757 ~-g~~~~A~~~~~~m~~~g~~p~~~ 780 (806)
. |++++|+..|++..... ||..
T Consensus 116 ~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCHH
Confidence 8 99999998888888753 4443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=5.5e-06 Score=71.74 Aligned_cols=96 Identities=5% Similarity=-0.226 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhc
Q 047492 643 CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSG 722 (806)
Q Consensus 643 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (806)
.+..+...+.+.|++++|...|+.+....+ .+...+..+...+...|++++|...++++....|.+...+..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 444555555666666666666666655532 2344455555566666666666666666666666666666666666666
Q ss_pred cccchhhHHHHHHHHHc
Q 047492 723 CIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 723 ~g~~~~A~~~~~~~~~~ 739 (806)
.|++++|+..|+++.+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.34 E-value=3.5e-05 Score=71.85 Aligned_cols=122 Identities=9% Similarity=-0.036 Sum_probs=63.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047492 384 INSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKV 463 (806)
Q Consensus 384 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 463 (806)
...+...|++++|.+.|++.. .|+...+..+...+...|++++|...++...+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 334444455555555554432 2344445555555555555555555555544443 33444455555555555555
Q ss_pred hHHHHHHHHHhhcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 464 EVGYLIHSELSRMNKVA---------------SENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 464 ~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
++|...++...+..+.. ....+..+...|...|++++|...|++..+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555554432220 124556666666666666666666666665
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=1.5e-05 Score=78.81 Aligned_cols=166 Identities=8% Similarity=0.044 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHH
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSM-----ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLL 684 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 684 (806)
...+..+...|++++|...+.+..+....... ..+..+...+...|++++|...+++..+.......
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------- 150 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-------- 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC--------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc--------
Confidence 34455566666666666666665553211110 11222334445555666666666655543221110
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcC-CCCC-----hhhHHHHHHHHhh-
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC-FPLD-----TYTYNILLRRLSV- 757 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~- 757 (806)
......+++.+...|...|++++|+..++++.+.. ..|+ ..+|+.+...|..
T Consensus 151 ---------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 151 ---------------------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence 00012356667777777777777777777776320 1122 1467777777777
Q ss_pred hcHHHHHHHHHHHHHcC----CCC-ChhhHHHHHhhhhccCCHHHH-HHHHHh
Q 047492 758 SEIDHACELFNRMRRKG----YEP-DQWTFDILKCGLYNCLRTDEA-ERRLEE 804 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~g----~~p-~~~~~~~l~~~~~~~g~~~eA-~~~l~~ 804 (806)
|++++|+..+++..... ... -..++..+..++.+.|+.++| ...+++
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88888888887766431 111 145667777788888888888 665543
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=9e-06 Score=72.23 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC 211 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 211 (806)
..+..+...+...|++++|+..|++..+.. ..+..++..+..++...|++++|...++......+.+..++..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444455555555555555544331 1133344444444444444444444444444444333334444444444
Q ss_pred ccCCHHHHHHHHHHhHh
Q 047492 212 KQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~~ 228 (806)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44444444444444443
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.9e-06 Score=74.88 Aligned_cols=109 Identities=8% Similarity=-0.102 Sum_probs=88.3
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCC
Q 047492 663 VMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 742 (806)
.++.+.... +.+...+..+...+...|++.+|...++.+....|.+...|..+..+|...|++++|+..|+++.+. .+
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-DI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC
Confidence 444544332 1233455667778889999999999999999888999999999999999999999999999999987 35
Q ss_pred CChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 743 LDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 743 ~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.+...|..+..+|.. |++++|...|++....
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888888888 9999999999998865
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=3e-05 Score=68.79 Aligned_cols=129 Identities=9% Similarity=-0.053 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455556666667777777777666654322 45666666667777777777777777766654 445666777777777
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYIQ--LIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
..|++++|...+++..+..+. +...+.. ....+...|++++|+..+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 778888888777777766544 4444433 33336667788888887776543
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=2.5e-06 Score=81.16 Aligned_cols=184 Identities=8% Similarity=-0.077 Sum_probs=134.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH-------HHHHHcCCChhHHHHHHHHHHhCCCCCCc----------
Q 047492 615 GLCKAMKANLAWGFMREMRHNGMYPS-MECYEEL-------IKLLCSTKNYDMVVGVMNHLEGHGRQVTS---------- 676 (806)
Q Consensus 615 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------- 676 (806)
++ ..++..+|.+.|.+..+ ..|+ ...|..+ ...+.+.++..+++..+..-.+. .|+.
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGL 90 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTT
T ss_pred cc-cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCc
Confidence 44 68999999999999998 4553 4566666 45566666666666665554441 1110
Q ss_pred ------------hhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 677 ------------FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 677 ------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
...-.+...+...|++++|.+.+.......|.+. ....+...+.+.+++++|+..|+...+.. .|.
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 1122344567789999999999999987777666 77888889999999999999998665431 111
Q ss_pred --hhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC--hhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 745 --TYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD--QWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 745 --~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
...+..+..++.. |++++|+..|++.......|. .........++.+.|+.++|.++|+++
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2367777888888 999999999999885433254 335667888999999999999999876
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=4.7e-05 Score=75.04 Aligned_cols=219 Identities=14% Similarity=0.041 Sum_probs=110.1
Q ss_pred cCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHH
Q 047492 564 HVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM-KANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
+.+..++|+++++++.. +.|+..| +|+.--..+...| .+++++.+++.+.... +-+..
T Consensus 66 ~~e~se~AL~lt~~~L~--~nP~~yt------------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~ 124 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR--MNPAHYT------------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQ 124 (349)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHH
T ss_pred hCCCCHHHHHHHHHHHH--hCchhHH------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHH
Confidence 33444566666666663 3455544 3555444555555 3666666666666532 12344
Q ss_pred HHHHHHHHHHcC-C-ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHH--------HHHHHHHhhhhccCcchhh
Q 047492 643 CYEELIKLLCST-K-NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLY--------EAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 643 ~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~ 712 (806)
.|+.-..++.+. + ++++++++++.+.+.... +...++--.+...+.|... +++..+.++....+.+...
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 455544444444 4 566666666666554322 2223333233333333333 5666666666666666666
Q ss_pred HHHHHHhhhcccc-------chhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcH--------------------HHHH
Q 047492 713 LGQLIGVFSGCIK-------VSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEI--------------------DHAC 764 (806)
Q Consensus 713 ~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~--------------------~~A~ 764 (806)
|+.....+.+.++ ++++++.++++... .+-|...|+-+-..+.+ |+. .+..
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVE 282 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHH
Confidence 6666666555554 45666666666654 34455556555555544 332 2222
Q ss_pred HHHHHHHHcC-----CCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 765 ELFNRMRRKG-----YEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 765 ~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
+...++...+ -.++...+..++..|...|+.++|.++++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222222211 0244555566666666666666666666554
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=3.8e-06 Score=82.25 Aligned_cols=193 Identities=13% Similarity=-0.017 Sum_probs=128.7
Q ss_pred ChhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 551 NFQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
+...+..+...+...|++++|...|++..+. .|+... .|..+..+|.+.|++++|+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~ 62 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAV------------------YYTNRALCYLKMQQPEQALADCR 62 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHH------------------HHHHHHHHHHHhcCHHHHHHHHH
Confidence 4556777888899999999999999998864 454433 48889999999999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 631 EMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 631 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
+..+. .| +...+..+..+|...|++++|...++...+.+.... ..+...++...+..+... .........+.+
T Consensus 63 ~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 136 (281)
T 2c2l_A 63 RALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR-LNFGDDIPSALRIAKKKR---WNSIEERRIHQE 136 (281)
T ss_dssp HHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCSHHHHHHHHHHHHH---HHHHHHTCCCCC
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHHHHHHHHH---HHHHHHHHHhhh
Confidence 99874 44 567788889999999999999999998876543211 111112222222111111 111111234445
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC-hhhHHHHHHHHhh--hcHHHHHHHHHHHHHc
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD-TYTYNILLRRLSV--SEIDHACELFNRMRRK 773 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~--g~~~~A~~~~~~m~~~ 773 (806)
..+...+...+ .|+.++|++.++++.+. .|+ ......+...+.. +.+++|..+|.+....
T Consensus 137 ~~i~~~l~~l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 137 SELHSYLTRLI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55554444332 68888999888888775 344 3334444444444 6788899999887653
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=3e-05 Score=64.89 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK 494 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 494 (806)
+......+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3344445555555555555555555543 344555555666666666666666666665555444 55556666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 047492 495 SNRADIAARLLVEMEE 510 (806)
Q Consensus 495 ~~~~~~a~~~~~~m~~ 510 (806)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666655
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.24 E-value=2.6e-05 Score=77.00 Aligned_cols=101 Identities=5% Similarity=-0.107 Sum_probs=72.6
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047492 554 IYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMR 633 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 633 (806)
.+...+..+...|++++|.+.+.+..+... ........+. .+..+...+...|++++|+..+++..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~--~~~~~~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQ------------WQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--CCHHHHHHHH------------HHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc--CChhHHHHHH------------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 455567788899999999999998876432 2111101111 14456677788999999999999988
Q ss_pred hCCC---CCC--HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 634 HNGM---YPS--MECYEELIKLLCSTKNYDMVVGVMNHLE 668 (806)
Q Consensus 634 ~~g~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 668 (806)
+... .+. ..+|..+...|...|++++|...+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6321 222 4478888999999999999999999886
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=0.00045 Score=68.12 Aligned_cols=241 Identities=9% Similarity=-0.056 Sum_probs=135.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-C-Chh
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAG-MVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGD-G-STH 394 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 394 (806)
.+.+..++|+++++++...+. -+...|+.--..+...| .+++++++++.+.... +-+..+|+.--..+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 344455678888888777432 14445566555666666 4788888888777654 34556666665555554 5 677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 047492 395 EAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFE--------QMKDLVIFALERNIKLRDVTYDKFISALCKANK---- 462 (806)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---- 462 (806)
+++++++++.+...+ |...|+--.-.+.+.|.++ ++.+.++++.+.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 777777777766544 6666665554444444444 6666666666655 4455666666555555554
Q ss_pred ---hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHhHHHHHHHHHccCCcHHHHH
Q 047492 463 ---VEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM-EENGHKPTRALHRAVIRCLCNMETPAKQFL 538 (806)
Q Consensus 463 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 538 (806)
++++.+.+++....++. |...|+-+-..+.+.|+...- ++... ...|...+. . ...+.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~--~~~~~~~~~~~~~~~-~--------------~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVP--ILPAILPYTASKLNP-D--------------IETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGG--GHHHHGGGTC--------------------------
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccc--ccccccccccccccc-c--------------chhHH
Confidence 45666666666655554 666666555554444432000 00000 000000000 0 01111
Q ss_pred HHHHhHhh------CCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH
Q 047492 539 QLLNMQLS------HQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR 580 (806)
Q Consensus 539 ~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 580 (806)
.+...... ...+.+..+..+++.|...|+.++|.++++.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11111111 1235667788999999999999999999999864
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=1.2e-05 Score=72.37 Aligned_cols=119 Identities=8% Similarity=0.055 Sum_probs=72.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hH
Q 047492 389 GDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISA-LCKANKV--EV 465 (806)
Q Consensus 389 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~ 465 (806)
..|++++|...+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666554432 245566666666666666666666666666554 3345555566666 5566776 77
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 466 GYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
|...++...+.++. +...+..+...|...|++++|...|++..+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777776665544 566666777777777777777777777766
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=4.5e-05 Score=63.54 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|..+++.+.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 333344444444444444444444433221 123334444444444444444444444444332 223334444444444
Q ss_pred hcCChhHHHHHHHHHhhc
Q 047492 459 KANKVEVGYLIHSELSRM 476 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~ 476 (806)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 444444444444444443
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.23 E-value=3.5e-05 Score=64.50 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+......|.+.|++++|++.|++..+.... +...|..+..++.+.|++++|...+++.++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444455555566666666666655544322 45555555556666666666666666655544 344555666666666
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 047492 459 KANKVEVGYLIHSELSRMNKVASENTYI 486 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 486 (806)
..|++++|.+.|+...+.++. +...+.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~ 119 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEARE 119 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 666666666666666555443 443333
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.22 E-value=2e-05 Score=65.80 Aligned_cols=99 Identities=22% Similarity=0.145 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+...|++++|+..|+++.... ..+..++..+...+...|++++|...++.+....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4455566666666677777777776665542 224455666666666666666666666666665555555566666666
Q ss_pred hccCCHHHHHHHHHHhHhCC
Q 047492 211 CKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~ 230 (806)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 66666666666666655543
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=9.1e-06 Score=79.53 Aligned_cols=189 Identities=11% Similarity=-0.024 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH 685 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (806)
..+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|...+++..+... .+...+..+...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 35778889999999999999999999884 44 677888899999999999999999999987753 345677788889
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHH
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACE 765 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~ 765 (806)
+...|+.++|...++++....|.+...+...+....+.. ++ ..+........+.+......+ ..+..|++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l-~~l~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYL-TRLIAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999998665544333333333222111 11 222333333345555544444 3333499999999
Q ss_pred HHHHHHHcCCCCChhhH-HHHHhhhhcc-CCHHHHHHHHHhh
Q 047492 766 LFNRMRRKGYEPDQWTF-DILKCGLYNC-LRTDEAERRLEEM 805 (806)
Q Consensus 766 ~~~~m~~~g~~p~~~~~-~~l~~~~~~~-g~~~eA~~~l~~m 805 (806)
.+++..+. .|+.... ..+...+.+. +.+++|.++|++.
T Consensus 157 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 157 ECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98877643 5554433 3344444444 7788999988753
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.20 E-value=1.5e-05 Score=75.85 Aligned_cols=128 Identities=9% Similarity=-0.158 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCC--cccHHHHHHH
Q 047492 239 GIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPE--VFRFNFLVSR 316 (806)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~ 316 (806)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+-.+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 34455566666666666666665543 232224444444556666666666666544320 0 110 1234445556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 047492 317 LLKENRLMEVFDLFMDMKEGQISPD--GVTMNTVLCFFCKAGMVDVAIELYKSRSEF 371 (806)
Q Consensus 317 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 371 (806)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666666654322132 223344445556666666666666666653
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=1.8e-05 Score=66.98 Aligned_cols=100 Identities=10% Similarity=-0.069 Sum_probs=49.9
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHH
Q 047492 128 YHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIML 207 (806)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 207 (806)
+.+...+..+...+...|++++|+..|++..+.. ..+..++..+...+...|++++|...+++..+..+.+..++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3344445555555555555555555555554431 113344444444555555555555555555554444444444555
Q ss_pred HHhhccCCHHHHHHHHHHhHh
Q 047492 208 KCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~ 228 (806)
.++...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555554444
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=1.7e-05 Score=79.96 Aligned_cols=129 Identities=11% Similarity=-0.015 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--------------chhHHHHHHHhhccccHHHHHHHHHhhhhccC
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--------------SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQ 707 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 707 (806)
..+..+...|.+.|++++|...+++..+...... ...+..+...+.+.|++++|...++++....|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555566666666666666666655543322 35666666777777777777777777777777
Q ss_pred cchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHH-HHHHHHHH
Q 047492 708 SKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHA-CELFNRMR 771 (806)
Q Consensus 708 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A-~~~~~~m~ 771 (806)
.+...+..+..+|...|++++|+..|+++.+. .+.+...+..+..++.. |+.++| ..+|+.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888889999999999998886 34566778888888888 888887 44566654
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=4e-05 Score=64.83 Aligned_cols=96 Identities=11% Similarity=-0.024 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047492 379 VYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALC 458 (806)
Q Consensus 379 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 458 (806)
.+..+...+.+.|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444444444444444433211 33344444444444444444444444444432 223344444444444
Q ss_pred hcCChhHHHHHHHHHhhc
Q 047492 459 KANKVEVGYLIHSELSRM 476 (806)
Q Consensus 459 ~~~~~~~a~~~~~~~~~~ 476 (806)
+.|++++|.+.+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 445555555544444433
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.16 E-value=1.3e-05 Score=74.11 Aligned_cols=96 Identities=13% Similarity=-0.123 Sum_probs=45.8
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHhHhC----CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CC-Ccch
Q 047492 202 TRTIMLKCLCKQKKIDEAVEYFQQLVSG----REC--VSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRD---DV-VKLE 271 (806)
Q Consensus 202 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~ 271 (806)
++..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..... +. ....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444455555555555555555544332 101 112345555666666666666666665543210 00 0111
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 272 KAYDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
.++..+...+...|++++|.+.+++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 23344555555556666665555544
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=2e-05 Score=66.49 Aligned_cols=119 Identities=13% Similarity=-0.009 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
+...+..+...+...|++++|+..|++..... ..+...+..+...+...|++++|...++......+.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44555666666667777777777777766542 12445566666666666777777776666666655555566666666
Q ss_pred hhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 047492 210 LCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSR 250 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (806)
+...|++++|.+.++...+... .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655433 234455555555554444
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=5.1e-05 Score=63.83 Aligned_cols=114 Identities=13% Similarity=-0.027 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK 459 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 459 (806)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33334444444444444444444443221 133344444444444444444444444444432 2233444444444555
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 460 ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 460 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.|++++|...++...+..+. +...+..+...+...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 55555555555544444332 3334444444444333
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=1.2e-05 Score=69.73 Aligned_cols=95 Identities=9% Similarity=-0.016 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 168 AYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
.+..+...+...|++++|...|+......+.+...+..+..++...|++++|...|+...+.++ .+...+..+..+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344444444555555555555555554444444555555555555555555555555544332 233444445555555
Q ss_pred cCCHHHHHHHHHHhhh
Q 047492 248 NSRFEQAGKLLEDFKD 263 (806)
Q Consensus 248 ~g~~~~A~~~~~~~~~ 263 (806)
.|++++|...|+....
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=1.9e-05 Score=71.14 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=50.5
Q ss_pred cCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHhcCCH--HHHH
Q 047492 179 QGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDA-LCKNSRF--EQAG 255 (806)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 255 (806)
.|++++|...++......+.+..++..+...|...|++++|...|++..+... .+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34444444444444444444444444444444444555555554444443322 223344444444 4444444 5555
Q ss_pred HHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 256 KLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
..|+..... .+.+...+..+...+...|++++|...|++..
T Consensus 102 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 102 AMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555444432 11123344444444445555555555554444
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=1.1e-05 Score=69.39 Aligned_cols=95 Identities=8% Similarity=-0.131 Sum_probs=81.0
Q ss_pred hHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047492 678 IGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV 757 (806)
Q Consensus 678 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 757 (806)
.+..+...+...|++.+|...++.+....|.+...|..+..+|...|++++|+..|+++.+. .+.+...|..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 44556667888899999999999999888888999999999999999999999999999987 35567778888888888
Q ss_pred -hcHHHHHHHHHHHHHc
Q 047492 758 -SEIDHACELFNRMRRK 773 (806)
Q Consensus 758 -g~~~~A~~~~~~m~~~ 773 (806)
|++++|...|++....
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 9999999999988765
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=2.9e-05 Score=78.17 Aligned_cols=130 Identities=13% Similarity=-0.067 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----------------DYAYHVLLNALVEQGCFDAVAVVSKQIS 193 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (806)
+...+..+...|.+.|++++|+..|++.... .|+ ..+|..+..++.+.|++++|+..++...
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777788888888888888888888766 333 3677777777888888888888888888
Q ss_pred hcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 047492 194 MRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQA-GKLLEDFK 262 (806)
Q Consensus 194 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 262 (806)
+..+.+..++..+..+|...|++++|...|++..+..+ .+..++..+...+.+.|+.++| ..+++.|.
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776777777888888888888888888887776554 3456677777777777777777 34555543
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00014 Score=76.64 Aligned_cols=193 Identities=11% Similarity=-0.053 Sum_probs=139.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 047492 612 LIVGLCKAMKANLAWGFMREMRHNGMYPS----------------MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT 675 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 675 (806)
-...+.+.|++++|++.|..+.+..-... ...+..+...|...|++++|.+.+..+.+......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567889999999999999987422211 12467789999999999999999988765322221
Q ss_pred -c----hhHHHHHHHhhccccHHHHHHHHHhhhh------ccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCC
Q 047492 676 -S----FIGNTLLLHALKTRDLYEAWIRLRGMLI------NEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD 744 (806)
Q Consensus 676 -~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 744 (806)
. .+.+.+...+...|+.+.|...+..... .......++..++..|...|++++|...++++...-...+
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1 2233344445567889999999888762 1223345778899999999999999999999876422222
Q ss_pred -----hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc--CC-CC-C--hhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 745 -----TYTYNILLRRLSV-SEIDHACELFNRMRRK--GY-EP-D--QWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 745 -----~~~~~~li~~~~~-g~~~~A~~~~~~m~~~--g~-~p-~--~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
...|..++..|.. |++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4578888899999 9999999999887643 12 22 1 24566677788899999999988765
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=5.6e-05 Score=69.45 Aligned_cols=129 Identities=13% Similarity=-0.066 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---------------chhHHHHHHHhhccccHHHHHHHHHhhhhccCc
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT---------------SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQS 708 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 708 (806)
+..+...+...|++++|...+++..+...... ...+..+...+...|++.+|...++.+....|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 33444445555555555555555544322111 133444444555555555555555555555555
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH-HHHHHHHHc
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC-ELFNRMRRK 773 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~-~~~~~m~~~ 773 (806)
+...+..+..+|...|++++|+..|+++.+. .+.+...+..+..++.. ++.+++. ..|..|...
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666677777777777777777777765 23345556666555555 6666555 445555443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00015 Score=60.59 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 047492 414 TLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFN 493 (806)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 493 (806)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44445555666666666666666666654 345566666666777777777777777776665544 5666677777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 047492 494 KSNRADIAARLLVEMEE 510 (806)
Q Consensus 494 ~~~~~~~a~~~~~~m~~ 510 (806)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777665
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=4.2e-05 Score=62.28 Aligned_cols=98 Identities=11% Similarity=-0.039 Sum_probs=78.6
Q ss_pred CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCC-CChhhHHH
Q 047492 707 QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYE-PDQWTFDI 784 (806)
Q Consensus 707 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~-p~~~~~~~ 784 (806)
|.+...+..+...|...|++++|+..++++.+. .+.+...|..+...+.. |++++|+..|++....... .+...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 345566777888888899999999999998886 35567788888888888 9999999999998876321 14677888
Q ss_pred HHhhhhcc-CCHHHHHHHHHhh
Q 047492 785 LKCGLYNC-LRTDEAERRLEEM 805 (806)
Q Consensus 785 l~~~~~~~-g~~~eA~~~l~~m 805 (806)
+..++.+. |++++|.+.+++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 88899999 9999999998764
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=0.00013 Score=59.84 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++.....+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566666667777777777777766542 124555666666666667777777777666666555555666666666
Q ss_pred hccCCHHHHHHHHHHhHhCC
Q 047492 211 CKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~ 230 (806)
...|++++|.+.++...+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666666544
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.95 E-value=0.002 Score=63.21 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=148.8
Q ss_pred cCCCh-HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC----------hHHHHHHHHHH
Q 047492 564 HVKRP-DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK----------ANLAWGFMREM 632 (806)
Q Consensus 564 ~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m 632 (806)
+.|.+ ++|+.+++.+. .+.|+..| +|+.--..+...+. +++++.+++.+
T Consensus 41 ~~~e~s~eaL~~t~~~L--~~nP~~yt------------------aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 41 QAGELDESVLELTSQIL--GANPDFAT------------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HTTCCSHHHHHHHHHHH--TTCTTCHH------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH--HHCchhHH------------------HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 44555 57999999998 55788776 34433333322222 57888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcccc-HHHHHHHHHhhhhccCcc
Q 047492 633 RHNGMYPSMECYEELIKLLCSTK--NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRD-LYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 633 ~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~ 709 (806)
.... +-+..+|+.-..++.+.| .+++++++++.+.+.... +...++.-.......|. .++++..+..+....|.+
T Consensus 101 L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 101 LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 8732 236677777777777777 488999999999886533 33445544455555666 588999999999999999
Q ss_pred hhhHHHHHHhhhcc--------------ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--h----------cHHHH
Q 047492 710 ISLLGQLIGVFSGC--------------IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--S----------EIDHA 763 (806)
Q Consensus 710 ~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g----------~~~~A 763 (806)
...|+.....+... +.++++++.++++... .|-|...|+-+-..+.+ | .++++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 99998876665543 5677889999999886 46677778755444444 3 47888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHh-----hhhccCCHHHHHHHHHhh
Q 047492 764 CELFNRMRRKGYEPDQWTFDILKC-----GLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 764 ~~~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~eA~~~l~~m 805 (806)
++.++++.+. .||. .|+.+.. ++...|..+++..+++++
T Consensus 258 l~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 258 LESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 9999999875 4554 3443222 233578888888888765
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=4.8e-05 Score=63.80 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=70.0
Q ss_pred HHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC--CCC----hhhHHHHH
Q 047492 679 GNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF--PLD----TYTYNILL 752 (806)
Q Consensus 679 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~li 752 (806)
+..+...+.+.|++++|+..++++....|.+..+++.+..+|...|++++|++.++++.+... .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344455566666666666666666666666777777888888888888888888888876421 111 13566667
Q ss_pred HHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHH
Q 047492 753 RRLSV-SEIDHACELFNRMRRKGYEPDQWTFDI 784 (806)
Q Consensus 753 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ 784 (806)
.++.. |++++|++.|++.... .||..+...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 77777 8889999888887764 455554443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.94 E-value=8.9e-05 Score=62.05 Aligned_cols=98 Identities=11% Similarity=-0.041 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHh
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCL 210 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 210 (806)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..++...+..+.+..++..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3445555666667777777777777766552 124556666666666777777777777776666665666666666666
Q ss_pred hccCCHHHHHHHHHHhHhC
Q 047492 211 CKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~ 229 (806)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666666543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.94 E-value=6.9e-05 Score=64.35 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC 211 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 211 (806)
..+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|+......+.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 333344444444555555555555544331 1133344444444444555555555555444444444444444444444
Q ss_pred ccCCHHHHHHHHHHhH
Q 047492 212 KQKKIDEAVEYFQQLV 227 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~ 227 (806)
..|++++|.+.|+...
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.94 E-value=0.00031 Score=57.55 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELS 474 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 474 (806)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333344444444443333332 1223333333333444444444444443333
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=7.2e-05 Score=66.21 Aligned_cols=99 Identities=7% Similarity=-0.066 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
+...+..+...|.+.|++++|+..|++..+.. .-+...|..+..++...|++++|+..|+...+..+.+...+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555555666666666666666666665542 11444555555556666666666666666665555555555555555
Q ss_pred hhccCCHHHHHHHHHHhHhC
Q 047492 210 LCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~ 229 (806)
+...|++++|.+.|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.90 E-value=6e-05 Score=61.30 Aligned_cols=97 Identities=12% Similarity=-0.136 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--CccchHHHHH
Q 047492 131 VRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFE--NDVTRTIMLK 208 (806)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~ 208 (806)
...+..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3344444445555555555555555554431 113334444444444555555555555555444433 3344444444
Q ss_pred Hhhcc-CCHHHHHHHHHHhHh
Q 047492 209 CLCKQ-KKIDEAVEYFQQLVS 228 (806)
Q Consensus 209 ~~~~~-g~~~~a~~~~~~~~~ 228 (806)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.87 E-value=0.00012 Score=62.25 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+...+..+...+...|++++|...++..... .|.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------------------------~~~~~~~~~~l~~~ 52 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----------------------------------NPLVAVYYTNRALC 52 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----------------------------------CcCcHHHHHHHHHH
Confidence 4455555666666666666666666665554 33344445555555
Q ss_pred hhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 720 FSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
|...|++++|+..++++.+.. +.+...|..+..+|.. |++++|+..|++...
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 53 YLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555666666555542 3344555555555555 666666666655553
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=7.9e-05 Score=61.77 Aligned_cols=92 Identities=16% Similarity=-0.018 Sum_probs=67.7
Q ss_pred HHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hc
Q 047492 681 TLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SE 759 (806)
Q Consensus 681 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~ 759 (806)
.+...+.+.|+..+|...++++....|.+...|..+..++...|++++|+..++++.+. -+.+...|..+..++.. |+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 34445556667777777777776666777777788888888888888888888888886 24456677777788888 88
Q ss_pred HHHHHHHHHHHHHc
Q 047492 760 IDHACELFNRMRRK 773 (806)
Q Consensus 760 ~~~A~~~~~~m~~~ 773 (806)
+++|+..+++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887653
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=0.00017 Score=62.17 Aligned_cols=98 Identities=14% Similarity=-0.044 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----DYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTI 205 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (806)
+...+..+...+...|++++|+..|++..+. .|+ ...|..+..++...|++++|...++......+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444444555555555555555555555543 333 3444445555555555555555555555544444444555
Q ss_pred HHHHhhccCCHHHHHHHHHHhHhC
Q 047492 206 MLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 206 li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
+..++...|++++|.+.|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.86 E-value=9.3e-05 Score=65.45 Aligned_cols=99 Identities=8% Similarity=-0.086 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHh
Q 047492 640 SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGV 719 (806)
Q Consensus 640 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 719 (806)
+...+..+...+...|++++|++.+++..+... .+...+..+...+...|++++|...++++....|.+...+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455677777788888888888888888877653 2455666777777778888888888888877777777777778888
Q ss_pred hhccccchhhHHHHHHHHHc
Q 047492 720 FSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 720 ~~~~g~~~~A~~~~~~~~~~ 739 (806)
|...|++++|+..|+++.+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88888888888888887775
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00011 Score=61.44 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC--C----HHhHHHHH
Q 047492 169 YHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV--S----GFMIGIVV 242 (806)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~li 242 (806)
+..+-..+.+.|++++|+..|++..+..+.+..+|..+..+|...|++++|.+.+++.++.+... + ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444445555555554444443321100 0 12344444
Q ss_pred HHHHhcCCHHHHHHHHHHhh
Q 047492 243 DALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~ 262 (806)
..+...|++++|++.|++..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555544
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.83 E-value=0.00034 Score=64.09 Aligned_cols=94 Identities=14% Similarity=-0.061 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 047492 413 KTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGF 492 (806)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 492 (806)
..+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|+...+..+. +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 455556666666677777777776666654 345566666667777777777777777776665544 555666666666
Q ss_pred HhcCCHHHHH-HHHHHH
Q 047492 493 NKSNRADIAA-RLLVEM 508 (806)
Q Consensus 493 ~~~~~~~~a~-~~~~~m 508 (806)
...++.+++. ..+..|
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555555444 333433
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.83 E-value=0.00044 Score=58.70 Aligned_cols=98 Identities=16% Similarity=0.026 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 047492 411 GKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIH 490 (806)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 490 (806)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++...+.++. +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45566666666666777777777777666654 345566667777777777777777777777666544 6667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047492 491 GFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~ 510 (806)
.+...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777665
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.80 E-value=0.0046 Score=60.64 Aligned_cols=181 Identities=7% Similarity=-0.020 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHH
Q 047492 568 PDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAM--KANLAWGFMREMRHNGMYPSMECYE 645 (806)
Q Consensus 568 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~ 645 (806)
+++++.+++.+... .|...+ +|+.-...+...+ .+++++.+++.+.+.. +-|...|+
T Consensus 90 l~~EL~~~~~~L~~--~PKny~------------------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~ 148 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYG------------------TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWD 148 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHH------------------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHH------------------HHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 57788888888854 454443 4777777777777 4899999999999843 33677777
Q ss_pred HHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcc--------------ccHHHHHHHHHhhhhccCcch
Q 047492 646 ELIKLLCSTKN-YDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKT--------------RDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 646 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~ 710 (806)
.-..++...|. ++++++.++.+.+..+. +...++.....+... +.+++++..+..+....|.+.
T Consensus 149 ~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 149 YRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 77777888888 59999999999987644 333444433333322 568899999999999999999
Q ss_pred hhHHHHHHhhhcc-----------ccchhhHHHHHHHHHcCCCCChhhHHHHHHHH-----hh-hcHHHHHHHHHHHHHc
Q 047492 711 SLLGQLIGVFSGC-----------IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRL-----SV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 711 ~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-----~~-g~~~~A~~~~~~m~~~ 773 (806)
..|+-+-..+... +.++++++.++++.+. .||. .|+.+..+. .. |..+++...++++.+.
T Consensus 228 SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 228 SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 9998766666555 4578899999999985 5665 455433222 23 6778888888888864
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.79 E-value=4.9e-05 Score=63.97 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC--CCC----hhhHHHHHHHHhh-hcH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF--PLD----TYTYNILLRRLSV-SEI 760 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~li~~~~~-g~~ 760 (806)
..|+..+|...++++....|.+..++..+...|...|++++|+..++++.+... .++ ...|..+..++.. |++
T Consensus 16 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 333333333333333333344444555556666666666666666666665421 111 4556666666666 777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHH
Q 047492 761 DHACELFNRMRRKGYEPDQWTFDILK 786 (806)
Q Consensus 761 ~~A~~~~~~m~~~g~~p~~~~~~~l~ 786 (806)
++|...|++..... |+......+.
T Consensus 96 ~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 96 KDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 77777777776643 3444444333
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=0.00087 Score=57.63 Aligned_cols=95 Identities=12% Similarity=-0.040 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047492 378 IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPG----KKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKF 453 (806)
Q Consensus 378 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 453 (806)
..+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444444444444444444432 122 2333334444444444444444444444332 2233334444
Q ss_pred HHHHHhcCChhHHHHHHHHHhh
Q 047492 454 ISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 454 l~~~~~~~~~~~a~~~~~~~~~ 475 (806)
..++...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00091 Score=70.20 Aligned_cols=131 Identities=9% Similarity=-0.111 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-Chhh
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVF----RFNFLVSRLLKENRLMEVFDLFMDMKE----GQISP-DGVT 344 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~~ 344 (806)
+..+...|...|++++|.+.+.......+..++.. +.+.+-..+...|+.+++..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34455555555555555555555443111111111 111111222234555555555554432 11111 1234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 345 MNTVLCFFCKAGMVDVAIELYKSRSEF--GL--SP-NGIVYNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 345 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+..+...|...|++++|..+++..... +. .+ ...++..++..|...|++++|..++++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555666666666666666554321 10 11 12345555555556666666665555543
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=0.00027 Score=58.43 Aligned_cols=92 Identities=7% Similarity=-0.027 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 047492 417 ILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSN 496 (806)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 496 (806)
.+...+.+.|++++|...++..++.. +.+...+..+..++...|++++|...++...+.++. +...+..+...+...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34455566677777777777666654 345566666666777777777777777776666554 5666667777777777
Q ss_pred CHHHHHHHHHHHHH
Q 047492 497 RADIAARLLVEMEE 510 (806)
Q Consensus 497 ~~~~a~~~~~~m~~ 510 (806)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777665
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.72 E-value=0.00054 Score=57.37 Aligned_cols=95 Identities=7% Similarity=0.012 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCC--CC----HHHHHHH
Q 047492 415 LSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKV--AS----ENTYIQL 488 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 488 (806)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++......+. ++ ...|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444445555555555555555555443 334445555555555666666666655555443221 11 4456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047492 489 IHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 489 i~~~~~~~~~~~a~~~~~~m~~ 510 (806)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6666667777777777766665
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.0005 Score=57.58 Aligned_cols=92 Identities=16% Similarity=0.000 Sum_probs=53.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---ccchHHHHHH
Q 047492 137 LVMGYALAGKPDIALHLFGKMRFQGMDLDD----YAYHVLLNALVEQGCFDAVAVVSKQISMRGFEN---DVTRTIMLKC 209 (806)
Q Consensus 137 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~ 209 (806)
+...+...|++++|+..|++..+. .|+. ..+..+..++...|++++|...|+.+....+.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444555666666666666666554 2222 255555556666666666666666666655544 3345555666
Q ss_pred hhccCCHHHHHHHHHHhHhCC
Q 047492 210 LCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~ 230 (806)
+...|++++|...|+.+.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 666666666666666665543
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.68 E-value=0.00023 Score=75.05 Aligned_cols=128 Identities=12% Similarity=-0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--------------chhHHHHHHHhhccccHHHHHHHHHhhhhccCcc
Q 047492 644 YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--------------SFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK 709 (806)
Q Consensus 644 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 709 (806)
|..+...|.+.|++++|...|++..+...... ...+..+..++.+.|++.+|...++++....|.+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 33444444445555555555554444322211 3455566666777777777777777777777777
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHH-HHHHHHHH
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHAC-ELFNRMRR 772 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~-~~~~~m~~ 772 (806)
...+..+..+|...|++++|+..|+++.+. .+.+...|..+..++.. |+.+++. .++..|..
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888888888889988888886 34456677777777777 8877765 34555543
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.66 E-value=7.1e-05 Score=79.28 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=51.5
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhH
Q 047492 651 LCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDI 730 (806)
Q Consensus 651 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 730 (806)
+.+.|++++|.+.+++..+... .+...+..+...+.+.|+.++|...++++....|.+...+..+..+|...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555555555555554421 123344444444445555555555555554444444444555555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH--Hhh-hcHHHHHHHHH
Q 047492 731 EGLQKMIEQCFPLDTYTYNILLRR--LSV-SEIDHACELFN 768 (806)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~li~~--~~~-g~~~~A~~~~~ 768 (806)
+.++++.+.. +.+...+..+..+ +.. |++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554431 2222333333333 333 44555544443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.00019 Score=62.98 Aligned_cols=137 Identities=9% Similarity=-0.081 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHNGMY-PS----MECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNT 681 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 681 (806)
.++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.....+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------ 83 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------ 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------
Confidence 35566666777777777777777776652100 11 12455566666666777777666666543211000
Q ss_pred HHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCC-CC----ChhhHHHHHHHHh
Q 047492 682 LLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCF-PL----DTYTYNILLRRLS 756 (806)
Q Consensus 682 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~ 756 (806)
..+....++..+...|...|++++|+..+++..+... .. ....+..+...+.
T Consensus 84 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 84 -----------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 0001122344555566666666666666666554310 00 1234555555565
Q ss_pred h-hcHHHHHHHHHHHHH
Q 047492 757 V-SEIDHACELFNRMRR 772 (806)
Q Consensus 757 ~-g~~~~A~~~~~~m~~ 772 (806)
. |++++|...+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 6 677777666666543
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.63 E-value=0.00056 Score=57.26 Aligned_cols=93 Identities=14% Similarity=-0.031 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--chhHHHH
Q 047492 609 YNTLIVGLCKAMKANLAWGFMREMRHNGMYPS-M---ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVT--SFIGNTL 682 (806)
Q Consensus 609 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 682 (806)
+..+...+...|++++|...|+...+.. |+ . ..+..+..++...|++++|...++.+.+...... ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4456677788888888888888887742 32 2 3566677778888888888888888776543221 2223333
Q ss_pred HHHhhccccHHHHHHHHHhhh
Q 047492 683 LLHALKTRDLYEAWIRLRGML 703 (806)
Q Consensus 683 ~~~~~~~~~~~~a~~~~~~~~ 703 (806)
...+...|+.++|...++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.62 E-value=0.00015 Score=63.74 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRHN----GMYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNT 681 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 681 (806)
.++..+...+...|++++|...+++..+. +..+ ...++..+..++...|++++|.+.+++..+.......
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 124 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----- 124 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-----
Confidence 37788899999999999999999998763 1111 1345677778888899999999988887543111000
Q ss_pred HHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 682 LLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 682 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+....++..+...|...|+.++|+..+++..+.
T Consensus 125 ------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 125 ------------------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0111234556677777778888888888777653
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.62 E-value=9e-05 Score=65.40 Aligned_cols=109 Identities=10% Similarity=0.035 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC------CCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHH
Q 047492 641 MECYEELIKLLCSTKNYDMVVGVMNHLEGHG------RQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLG 714 (806)
Q Consensus 641 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 714 (806)
...+......+.+.|++++|+..|......- -.|+...+ ....+....++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHHHHHH
Confidence 3456666777777888888888777766530 00000000 001234455677
Q ss_pred HHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 715 QLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 715 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
.+..+|.+.|++++|+..++++.+. -+.+...|..+..+|.. |++++|+..|++....
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKR-EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7777777888888888888888776 34556677777777777 8888888888877765
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=7.2e-05 Score=61.64 Aligned_cols=82 Identities=12% Similarity=-0.037 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHhcC---CCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 047492 180 GCFDAVAVVSKQISMRG---FENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGK 256 (806)
Q Consensus 180 ~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (806)
|++++|+..|++..+.+ +.+..++..+..+|...|++++|.+.|++..+..+ .+..++..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444444444432 11223344444444444444444444444444332 223344444444444444444444
Q ss_pred HHHHhh
Q 047492 257 LLEDFK 262 (806)
Q Consensus 257 ~~~~~~ 262 (806)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.60 E-value=0.00035 Score=73.57 Aligned_cols=129 Identities=10% Similarity=-0.038 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047492 130 QVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLD----------------DYAYHVLLNALVEQGCFDAVAVVSKQIS 193 (806)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (806)
....|..+...|.+.|++++|+..|++..+. .|+ ..+|..+..++.+.|++++|+..+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445666677777788888888888877654 222 3566666666677777777777777777
Q ss_pred hcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHh
Q 047492 194 MRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAG-KLLEDF 261 (806)
Q Consensus 194 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~ 261 (806)
+..+.+..+|..+..+|...|++++|...|++..+..+ .+..++..+..++.+.|+.+++. .++..|
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777777777777777777666543 23455666666666666666554 333444
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.0002 Score=72.89 Aligned_cols=139 Identities=10% Similarity=-0.037 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
..+..+...+.+.|++++|.+.+++..+.-.. . . .....+......+....++..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--------~----~-------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------S----R-------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------H----H-------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--------C----c-------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777888888888888777642100 0 0 000011111234455667788888888
Q ss_pred ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHH
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAER 800 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~ 800 (806)
+.|++++|+..++++.+. .+.+...|..+..+|.. |++++|+..|++..+... .+...+..+..++.+.|+.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888886 24456778888888888 899999988888887632 255666677777777888777764
Q ss_pred H
Q 047492 801 R 801 (806)
Q Consensus 801 ~ 801 (806)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.53 E-value=0.0011 Score=58.23 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 447 DVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
...|..+..+|.+.|++++|...++...+.++. +...|..+..+|...|++++|...|++..+ +.|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 356777888888889999999888888877655 778888888889999999999999988887 456543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.52 E-value=0.00014 Score=59.93 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=46.9
Q ss_pred CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 707 QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 707 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|.+...+..+..+|...|++++|+..++++.+. .+.+...+..+..++.. |++++|+..+++....
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344556667777777777777788888877776 34456667777777777 8888888877777654
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.47 E-value=0.00056 Score=69.51 Aligned_cols=137 Identities=14% Similarity=-0.026 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhh
Q 047492 608 LYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHAL 687 (806)
Q Consensus 608 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (806)
.|..+...+.+.|++++|+..|++.++. .+.. ......+++.+. .+.+...+..+...+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~~--------~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAKL--------QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGGG--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4667788899999999999999988761 0000 000000000000 0011233444444555
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACE 765 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~ 765 (806)
+.|++++|...++++....|.+...+..+..+|...|++++|+..|+++.+. .+.+...+..+...+.. ++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555566667777778888888888888888888876 23455666666666666 77766653
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.46 E-value=0.00038 Score=73.70 Aligned_cols=118 Identities=9% Similarity=-0.052 Sum_probs=74.2
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 047492 386 SLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEV 465 (806)
Q Consensus 386 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 465 (806)
.+.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345566777777777766654322 45666667777777777777777777777664 4456667777777777777777
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047492 466 GYLIHSELSRMNKVASENTYIQLIHG--FNKSNRADIAARLLV 506 (806)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 506 (806)
|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777665543 33444444444 667777888887777
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00029 Score=70.80 Aligned_cols=144 Identities=7% Similarity=-0.026 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhh
Q 047492 642 ECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFS 721 (806)
Q Consensus 642 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (806)
..+..+...+.+.|++++|...|++...... +.. .+...++..++...+. ..++..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 4466777788889999999999998876532 211 1123333333332221 236777888888
Q ss_pred ccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC-hhhHHHHHhh-hhccCCHHHH
Q 047492 722 GCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD-QWTFDILKCG-LYNCLRTDEA 798 (806)
Q Consensus 722 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~eA 798 (806)
+.|++++|+..++++.+. .+.+...|..+..+|.. |++++|...|++.... .|+ ...+..+..+ ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888886 34567778888888888 8888888888887643 343 3344444444 2345667777
Q ss_pred HHHHHhhC
Q 047492 799 ERRLEEMF 806 (806)
Q Consensus 799 ~~~l~~m~ 806 (806)
.+++.+|+
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 77777664
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.35 E-value=0.00043 Score=69.56 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhh
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLC 211 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 211 (806)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---------~~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---------HHHHHHHHHHHHH
Confidence 34555666667778888888888877654 333221 00111111111111 0124555555666
Q ss_pred ccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcc-hhhHHHHHHH-HHHcCCHHH
Q 047492 212 KQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKL-EKAYDVWLRN-LVRAGRLDL 289 (806)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~-~~~~g~~~~ 289 (806)
+.|++++|...++..++... .+...|..+..+|...|++++|...|++.... .|+ ...+..+... ....+..++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555432 34455555666666666666666666665532 222 2223333322 223344555
Q ss_pred HHHHHHhhh
Q 047492 290 ALEFLKSKN 298 (806)
Q Consensus 290 a~~~~~~~~ 298 (806)
+...|..+.
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 555665554
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.29 E-value=0.0012 Score=56.36 Aligned_cols=23 Identities=13% Similarity=-0.234 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 047492 612 LIVGLCKAMKANLAWGFMREMRH 634 (806)
Q Consensus 612 li~~~~~~~~~~~A~~~~~~m~~ 634 (806)
....+.+.|++++|+..|++.++
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~ 39 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAME 39 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444455555555555555554
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.29 E-value=0.0015 Score=55.80 Aligned_cols=28 Identities=14% Similarity=-0.100 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 133 FNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 133 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
.+......+.+.|++++|+..|++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444555666777888888888777655
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.24 E-value=0.00084 Score=54.84 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred HHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHc
Q 047492 695 AWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRK 773 (806)
Q Consensus 695 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~ 773 (806)
|...++++....|.+...+..+...|...|++++|+..++++.+. .+.+...|..+..+|.. |++++|...|++....
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555566666677777777777777777777777765 24445666777777777 7777777777776654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00023 Score=57.76 Aligned_cols=90 Identities=9% Similarity=-0.063 Sum_probs=56.4
Q ss_pred hhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCC-------hhh
Q 047492 710 ISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPD-------QWT 781 (806)
Q Consensus 710 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~ 781 (806)
...+..+...+...|++++|+..++++.+. .+.+...|..+..++.. |++++|+..+++.... .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 344556666777777777777777777765 34456667777777777 7777777777777654 333 334
Q ss_pred HHHHHhhhhccCCHHHHHHHH
Q 047492 782 FDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 782 ~~~l~~~~~~~g~~~eA~~~l 802 (806)
+..+..++...|+.++|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 445555555556555554433
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.19 E-value=0.001 Score=69.74 Aligned_cols=133 Identities=7% Similarity=-0.101 Sum_probs=88.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 047492 613 IVGLCKAMKANLAWGFMREMRHN---GMYP----SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLH 685 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 685 (806)
+..+...|++++|+.++++.++. -+-| ...+++.+..+|...|++++|..++++.++.
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i--------------- 380 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG--------------- 380 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 34456678888888888776652 1222 2346777777788888888888877766432
Q ss_pred hhccccHHHHHHHHHhhh-hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcC---CCCCh----hhHHHHHHHHhh
Q 047492 686 ALKTRDLYEAWIRLRGML-INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC---FPLDT----YTYNILLRRLSV 757 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~----~~~~~li~~~~~ 757 (806)
.+... ...|....+++.|..+|..+|++++|+.+++++.+.- ..||. .+.+.+..++..
T Consensus 381 -------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 -------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp -------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11111 1223334567888889999999999999988877631 23442 344455566666
Q ss_pred -hcHHHHHHHHHHHHHc
Q 047492 758 -SEIDHACELFNRMRRK 773 (806)
Q Consensus 758 -g~~~~A~~~~~~m~~~ 773 (806)
|.+++|..+|.++++.
T Consensus 448 ~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8999999999999864
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.18 E-value=0.0011 Score=54.20 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 185 VAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
|+..|+...+..+.+...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444455555555555555555555555544332 233444555555555555555555555443
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.16 E-value=0.0016 Score=55.51 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=31.1
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhcccc----------HHHHHHHHHhhhhccCcchhhHHHHHHhhhc
Q 047492 653 STKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRD----------LYEAWIRLRGMLINEQSKISLLGQLIGVFSG 722 (806)
Q Consensus 653 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (806)
+.+.+++|.+.++...+... .+...+..+...+...++ +++|+..++++..-.|.....|+.+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34445555555555554432 133333333334444333 2344444444444444444444444444443
Q ss_pred c
Q 047492 723 C 723 (806)
Q Consensus 723 ~ 723 (806)
.
T Consensus 93 l 93 (158)
T 1zu2_A 93 F 93 (158)
T ss_dssp H
T ss_pred h
Confidence 3
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.16 E-value=0.0095 Score=64.16 Aligned_cols=172 Identities=11% Similarity=0.011 Sum_probs=127.4
Q ss_pred CChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCC----------hHHHHHHHHHHHhC
Q 047492 566 KRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMK----------ANLAWGFMREMRHN 635 (806)
Q Consensus 566 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~ 635 (806)
...++|++.++++.. +.|+..+ +|+.--.++...|+ +++++..++.+.+.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~t------------------aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 102 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFAT------------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 102 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHH------------------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHH------------------HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh
Confidence 445788999999985 4677766 47666666666666 89999999999984
Q ss_pred CCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhccc-cHHHHHHHHHhhhhccCcchhh
Q 047492 636 GMYPSMECYEELIKLLCSTK--NYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTR-DLYEAWIRLRGMLINEQSKISL 712 (806)
Q Consensus 636 g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 712 (806)
. +-+...|..-..++.+.| +++++.+.++++.+.+.. +...|+.-.....+.| ..+++...+.++....+.+...
T Consensus 103 ~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 103 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp C-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred C-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 2 336777888888888999 679999999999987643 4455665555666667 7889999999999889999999
Q ss_pred HHHHHHhhhcc--------------ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcH
Q 047492 713 LGQLIGVFSGC--------------IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEI 760 (806)
Q Consensus 713 ~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~ 760 (806)
|+....++.+. +.++++++.++++... .|-|...|+-+-..+.+ ++.
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCc
Confidence 98877766542 4567777777777765 35566677766666666 553
No 199
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.14 E-value=1e-07 Score=94.35 Aligned_cols=235 Identities=11% Similarity=0.125 Sum_probs=151.0
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHH
Q 047492 129 HQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLK 208 (806)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 208 (806)
..+.+|+.|..++...+...+|++.|-+.. |+..|..++.+..+.|.++.-...+...++. ..++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence 356778888888888888888887764443 6778889999999999999888887776654 455666778888
Q ss_pred HhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHH
Q 047492 209 CLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLD 288 (806)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (806)
+|++.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+++.|++.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHHH
Confidence 9999888766544321 24555566777888888888888777765543 333444455556655
Q ss_pred HHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 289 LALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 289 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
.|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.- .......++..|-..|.+++-+.+++.-
T Consensus 188 ~AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 188 AAVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSTTTTTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55442221 24567777777777777776655443322222 1122334555666777777777777765
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 047492 369 SEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLK 401 (806)
Q Consensus 369 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 401 (806)
.... ....-.|+-|.-.|++- +.++..+.++
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 4221 24555666666666654 3444444443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00028 Score=57.23 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
..+..+...+...|++++|...|++..+..+.+..++..+..++...|++++|.+.+++..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444444455555555555555555555544444455555555555555555555555555443
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.07 E-value=0.023 Score=61.14 Aligned_cols=149 Identities=11% Similarity=-0.056 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 047492 358 VDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS----------THEAYEVLKNSIDHGLFPGKKTLSILADALCRDG- 426 (806)
Q Consensus 358 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g- 426 (806)
-++|++.++.+.+.. +-+..+|+.--..+...|+ ++++++.++++.+...+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345666776666543 2234455544444444444 67777777777766544 6667776666666777
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---------
Q 047492 427 -KFEQMKDLVIFALERNIKLRDVTYDKFISALCKAN-KVEVGYLIHSELSRMNKVASENTYIQLIHGFNKS--------- 495 (806)
Q Consensus 427 -~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 495 (806)
+++++.+.++++.+.. +-+...|+.-...+.+.| .++++.+.++.+.+.++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5578888888877776 456677776666666777 777888888877777666 777777766666553
Q ss_pred -----CCHHHHHHHHHHHHH
Q 047492 496 -----NRADIAARLLVEMEE 510 (806)
Q Consensus 496 -----~~~~~a~~~~~~m~~ 510 (806)
+.++++++.+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 335566666665554
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.97 E-value=0.002 Score=67.58 Aligned_cols=105 Identities=11% Similarity=-0.128 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhH
Q 047492 607 KLYNTLIVGLCKAMKANLAWGFMREMRH-----NGMY-P-SMECYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIG 679 (806)
Q Consensus 607 ~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 679 (806)
.+++.|...|...|++++|..++++.++ .|-. | ...+++.|...|...|++++|..++++..+.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i--------- 422 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI--------- 422 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
Confidence 4789999999999999999999998775 2321 2 3456888999999999999999998887532
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhcc-CcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINE-QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
++...... |....+.+.+...+...+.+.+|..+++++.+.
T Consensus 423 -------------------~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 423 -------------------LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp -------------------HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 112223355566666777777788888777663
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.95 E-value=0.0016 Score=51.43 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=54.3
Q ss_pred CcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcC-CCCChhhHHH
Q 047492 707 QSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKG-YEPDQWTFDI 784 (806)
Q Consensus 707 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g-~~p~~~~~~~ 784 (806)
|.+...+..+...|...|++++|+..|+++.+.. +.+...|..+..+|.. |++++|+..|++..+.. -.++......
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 4556667777777777788888888888877762 4456677777777777 88888888777766542 1234444444
Q ss_pred HHhhhhc
Q 047492 785 LKCGLYN 791 (806)
Q Consensus 785 l~~~~~~ 791 (806)
+...+.+
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.91 E-value=0.029 Score=47.28 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=41.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----c
Q 047492 424 RDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCK----ANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNK----S 495 (806)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 495 (806)
..+..++|.++|++..+.| +...+..|-..|.. .++.++|.++|+...+.+ +...+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3334444444444444433 23334444444444 455555555555554443 44455555555555 5
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047492 496 NRADIAARLLVEMEENG 512 (806)
Q Consensus 496 ~~~~~a~~~~~~m~~~~ 512 (806)
++.++|...|++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 56666666666665544
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.85 E-value=0.03 Score=47.15 Aligned_cols=110 Identities=10% Similarity=-0.033 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHH
Q 047492 322 RLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCG----DGSTHEAY 397 (806)
Q Consensus 322 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 397 (806)
+.++|++.|++..+.|. |+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34555555555555441 2221 3333444444555555555555432 34444444444444 45555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047492 398 EVLKNSIDHGLFPGKKTLSILADALCR----DGKFEQMKDLVIFALERN 442 (806)
Q Consensus 398 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 442 (806)
+.|++..+.| +...+..|-..|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555443 33444444444444 445555555555554444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.83 E-value=0.004 Score=53.01 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=61.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 047492 426 GKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANK----------VEVGYLIHSELSRMNKVASENTYIQLIHGFNKS 495 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 495 (806)
+.+++|.+.++...+.. +.+...|..+-.++...++ +++|+..|++..+.++. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 34445555555555443 3344444444444444443 45777777777776665 666777777777765
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047492 496 -----------NRADIAARLLVEMEENGHKPTRALHRAVIRCL 527 (806)
Q Consensus 496 -----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (806)
|++++|++.|++..+ +.|+...|...+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 478888888888887 677777666555543
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.83 E-value=0.0051 Score=47.21 Aligned_cols=63 Identities=21% Similarity=0.081 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 047492 132 RFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMR 195 (806)
Q Consensus 132 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (806)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 334444444444444444444444444331 112233333334444444444444444444433
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.77 E-value=0.015 Score=44.48 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=21.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047492 420 DALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSR 475 (806)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 475 (806)
..+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333444444444444333332 22233333444444444444444444444433
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.38 E-value=0.019 Score=45.03 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 446 RDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
+...+..+...|.+.|++++|...|+...+.++. +...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666777777777777777777777766655 566777777777777777777777777664
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.34 E-value=0.077 Score=49.91 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=80.9
Q ss_pred cHHHHHHHHHhhhhccCc--chhhHHHHHHhhhcc-----ccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh--hcHH
Q 047492 691 DLYEAWIRLRGMLINEQS--KISLLGQLIGVFSGC-----IKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV--SEID 761 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--g~~~ 761 (806)
....|...++++.+..|. +-..+..|...|... |+.++|.+.|+++++....-+..++......++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 467788888888888887 566899999999884 9999999999999996322246777777777776 8999
Q ss_pred HHHHHHHHHHHcCCC--CChhhHHHHHhhhhccCCHHHHHHHHHh
Q 047492 762 HACELFNRMRRKGYE--PDQWTFDILKCGLYNCLRTDEAERRLEE 804 (806)
Q Consensus 762 ~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~eA~~~l~~ 804 (806)
++...+++....... |+....+ .|...+|..++++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~ 294 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAH 294 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHH
Confidence 999999999988776 6644444 3344666666654
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.04 E-value=0.21 Score=57.09 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSR 368 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~ 368 (806)
..|..+...+.+.|+++.|++.|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444444444444444444444443
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.86 E-value=0.023 Score=44.37 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=27.6
Q ss_pred HhhccccHHHHHHHHHhhhhccCcchh-hHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 685 HALKTRDLYEAWIRLRGMLINEQSKIS-LLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 685 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.+...|++.+|...++++....|.+.. .+..+..+|...|++++|+..|+++.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555544444444 4445555555555555555555555443
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.85 E-value=0.0045 Score=62.02 Aligned_cols=265 Identities=13% Similarity=0.107 Sum_probs=121.2
Q ss_pred CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHH
Q 047492 199 NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWL 278 (806)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 278 (806)
.+..|..|.++....+.+.+|.+.| ++. .|...|..++....+.|.+++-...+...++. .-+...=+.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHH
Confidence 3445555555555555444443211 111 12334455555555555555555555444332 11222333444
Q ss_pred HHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh
Q 047492 279 RNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMV 358 (806)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 358 (806)
-+|++.++..+-.+++. .|+..-...+.+-|...|.++.|.-+|..+-. |.-|...+.+.|++
T Consensus 124 ~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~y 186 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred HHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence 44444444333222111 13333344444444444444444433332211 12222222333333
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047492 359 DVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFA 438 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (806)
..|.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.-.. .....++..|...|.+++...+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333322111 2355677777777777777766554433333111 11223455667777777777777765
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 047492 439 LERNIKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVA-------SENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 439 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~ 502 (806)
.... +....+|+-|.-.|+|- ++++..+-++..-.+--.| ....|.-++-.|.+-.+++.|.
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5332 45666777777777765 3444443332221111111 2334555555566555555544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.74 E-value=0.029 Score=43.74 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=49.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYP-SME-CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQ 673 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 673 (806)
.....+.+.|++++|+..|++..+. .| +.. .+..+..+|...|++++|.+.+++..+....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3556778899999999999998874 44 456 7888888899999999999999998877543
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.72 E-value=0.13 Score=50.70 Aligned_cols=76 Identities=9% Similarity=-0.033 Sum_probs=63.0
Q ss_pred hccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCChhhH
Q 047492 704 INEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQWTF 782 (806)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~ 782 (806)
...+.+..++.++...+...|++++|+..++++...+ |+...|..+...+.. |++++|.+.|++.... .|...||
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4557788888888888888899999999999999974 777777777777878 9999999999988876 5666666
Q ss_pred H
Q 047492 783 D 783 (806)
Q Consensus 783 ~ 783 (806)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 5
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.58 E-value=0.026 Score=58.02 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=50.3
Q ss_pred chhhHHHHHHhhhccccchhhHHHHHHHHHcC---CCCC----hhhHHHHHHHHhh-hcHHHHHHHHHHHHH
Q 047492 709 KISLLGQLIGVFSGCIKVSQDIEGLQKMIEQC---FPLD----TYTYNILLRRLSV-SEIDHACELFNRMRR 772 (806)
Q Consensus 709 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~~ 772 (806)
...+++.|..+|..+|++++|+.+++++.+.- ..|+ ..+|+.|...|.. |++++|..++++..+
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34567888999999999999999999887631 2333 4578889999998 999999999888764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.58 E-value=0.11 Score=51.08 Aligned_cols=62 Identities=8% Similarity=-0.075 Sum_probs=28.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 234 SGFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
+..+|.++.-.+...|++++|...+++.... + |+...|..+-..+.-.|++++|.+.|++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444445555555555555444 1 333344444444444555555555554443
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.95 Score=39.05 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=42.7
Q ss_pred hcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHH
Q 047492 143 LAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEY 222 (806)
Q Consensus 143 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 222 (806)
..|+++.|.++.+.+. +...|..+.......|+++-|++.|..... +..+.-.|...|+.+...++
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444431 334455555555555555555444444432 22333333344444444443
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 223 FQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
-+....+|- ++.....+...|+++++.++|.+
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333332 33333344445555555555543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.44 E-value=0.032 Score=57.37 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=68.6
Q ss_pred cCCChHHHHHHHHHHHH---CCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-----C
Q 047492 564 HVKRPDLARAVYELMQR---SGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH-----N 635 (806)
Q Consensus 564 ~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~ 635 (806)
..|++++|+.++++..+ .-+.|+.... ..+++.|..+|...|++++|+.++++.++ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~---------------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l 374 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM---------------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY 374 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc
Confidence 45789999999998664 2233433220 12589999999999999999999998775 2
Q ss_pred CC-CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 636 GM-YP-SMECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 636 g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
|. .| ...+|+.+...|...|++++|..++++..+
T Consensus 375 G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 32 22 245688899999999999999999988754
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.25 E-value=0.093 Score=54.04 Aligned_cols=96 Identities=9% Similarity=-0.128 Sum_probs=71.4
Q ss_pred HHhhhcCCChHHHHHHHHHHHHC---CCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh-
Q 047492 559 IDGAGHVKRPDLARAVYELMQRS---GLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRH- 634 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~- 634 (806)
+..+.+.|++++|+.++++..+. -+.|+... + ..+++.+..+|...|++++|+.++++.++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~---~------------~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY---Q------------LKVLDCAMDACINLGLLEEALFYGTRTMEP 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH---H------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH---H------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34456778999999999998753 22333321 1 12588999999999999999999998775
Q ss_pred ----CC-CCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 635 ----NG-MYP-SMECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 635 ----~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
.| -.| ...+++.+...|...|++++|..++++..+
T Consensus 359 ~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22 122 245688899999999999999999888754
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.14 E-value=0.37 Score=54.97 Aligned_cols=157 Identities=10% Similarity=0.021 Sum_probs=89.1
Q ss_pred HHHHhCCChhHHHH-HHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCc
Q 047492 104 KLLHCAKLTPLMVD-FLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCF 182 (806)
Q Consensus 104 ~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 182 (806)
......++++.|.+ ++..++ +......++..+.+.|.+++|+++.+.-. .-+......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677887766 553322 01222667777777888888876653211 112334567788
Q ss_pred chHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047492 183 DAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAGKLLEDFK 262 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 262 (806)
+.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...+...|+.+...++-+...
T Consensus 669 ~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 669 TLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 8887775433 4566788888888888888888888887643 3334444444555555444443333
Q ss_pred hCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 263 DRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 263 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
.. + -++....+|.+.|++++|++++.++.+
T Consensus 735 ~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 735 TT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred Hc-C------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 32 1 133344445555555555555555443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.07 E-value=0.072 Score=54.87 Aligned_cols=60 Identities=8% Similarity=-0.070 Sum_probs=27.6
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHc---CCCCC----hhhHHHHHHHHhh-hcHHHHHHHHHHHH
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQ---CFPLD----TYTYNILLRRLSV-SEIDHACELFNRMR 771 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~-g~~~~A~~~~~~m~ 771 (806)
+++.|+.+|...|++++|+.+++++.+. -..|+ ..+++.|...|.. |++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444455555555555555544431 01222 2345555555555 55555555555443
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.06 E-value=1.1 Score=36.16 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHH
Q 047492 283 RAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAI 362 (806)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 362 (806)
-.|..++..++..+... ..+..-||-+|--....-+-+-..++++..-+. -|.. ..|++....
T Consensus 19 ldG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34555555555555543 123344555555444444544444444444321 1211 123333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047492 363 ELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERN 442 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (806)
..+-.+- .+...++..++.+...|+-++-.+++.++.. +..|++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3222211 2333444455556666666666666666433 224555666666666666666666666666665555
Q ss_pred C
Q 047492 443 I 443 (806)
Q Consensus 443 ~ 443 (806)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 3
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.03 E-value=0.31 Score=37.29 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047492 444 KLRDVTYDKFISALCKANK---VEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEEN 511 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 511 (806)
+.+...+..+..++...++ .++|..++++..+.++. +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666654433 57777777777777666 6777777777778888888888888887764
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.98 E-value=0.17 Score=42.56 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKAN---KVEVGYLIHSELSRMN-KVASENTYIQLIHGFNKSNRADIAARL 504 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 504 (806)
..+.+-|.+..+.+ .++..+...+..++++++ +.+++..+++++.+.+ +.-+...+..+.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555555 366667667777777777 5557777777777664 211345556666677888888888888
Q ss_pred HHHHHHCCCCCCHH
Q 047492 505 LVEMEENGHKPTRA 518 (806)
Q Consensus 505 ~~~m~~~~~~p~~~ 518 (806)
++.+.+ +.|+..
T Consensus 94 ~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 94 VRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHH--HCTTCH
T ss_pred HHHHHh--cCCCCH
Confidence 888877 566543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.91 E-value=1.7 Score=37.55 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=55.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHH
Q 047492 245 LCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLM 324 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 324 (806)
....|+++.|.++.+.+. +...|..+.......|+++-|.+.|..... |..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 345566666666655442 234566666666666666666666665543 444444555556665
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 047492 325 EVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKS 367 (806)
Q Consensus 325 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 367 (806)
...++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554444443332 134444455556666666666643
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.86 E-value=1.2 Score=35.84 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 047492 306 EVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGL 373 (806)
Q Consensus 306 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 373 (806)
+...+...++.+...|+.++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455566666777777777777766543 2345666666667777777777777777777666664
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.40 E-value=0.2 Score=38.33 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHhcCC---cchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCC
Q 047492 165 DDYAYHVLLNALVEQGC---FDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRE 231 (806)
Q Consensus 165 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 231 (806)
++..+..+..++...++ .++|..++++..+..+.+..+...+...+.+.|++++|...|+.+.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44444455555443322 45666666666665555555555556666666666666666666655443
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.08 E-value=0.33 Score=40.79 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhC
Q 047492 624 LAWGFMREMRHNGMYPSMECYEELIKLLCSTK---NYDMVVGVMNHLEGH 670 (806)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 670 (806)
.+.+.|.+..+.|. ++..+...+..++++++ +.++++.+++.+.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 34444444444332 44455445555555555 344555555555544
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.06 E-value=0.41 Score=37.53 Aligned_cols=23 Identities=4% Similarity=-0.353 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHH
Q 047492 135 DTLVMGYALAGKPDIALHLFGKM 157 (806)
Q Consensus 135 ~~li~~~~~~~~~~~A~~~~~~m 157 (806)
..+...+.+.+++..|+..|+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 33444444444444444444444
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.70 E-value=0.56 Score=36.77 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=24.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHN------GMYPSMECYEELIKLLCSTKNYDMVVGVMNHLEG 669 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 669 (806)
.+...+.+.|+++.|...|+...+. +-.+....+..+..++.+.|+++.|...++++.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444555554444443331 0011233344444444444444444444444433
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.45 E-value=17 Score=40.87 Aligned_cols=25 Identities=8% Similarity=-0.138 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047492 415 LSILADALCRDGKFEQMKDLVIFAL 439 (806)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (806)
|..++....+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445555566666666666554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.84 E-value=0.86 Score=37.69 Aligned_cols=102 Identities=10% Similarity=-0.022 Sum_probs=59.7
Q ss_pred hhHHHHHHHhhccccH------HHHHHHHHhhhhccCcchh-hHHHHHH------hhhccccchhhHHHHHHHHHcCCCC
Q 047492 677 FIGNTLLLHALKTRDL------YEAWIRLRGMLINEQSKIS-LLGQLIG------VFSGCIKVSQDIEGLQKMIEQCFPL 743 (806)
Q Consensus 677 ~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~~~~ 743 (806)
-++-..+...-+.|+. +.-...++++....||+.. .|...|. .|...++.++|.++|+.+.+.+ +.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h-Kk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC-KK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-HH
Confidence 3444444444455665 6667777777777776532 2222222 2234578888888888887652 22
Q ss_pred ChhhHHHHHHHHhh-hcHHHHHHHHHHHHHcCCCCCh
Q 047492 744 DTYTYNILLRRLSV-SEIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 744 ~~~~~~~li~~~~~-g~~~~A~~~~~~m~~~g~~p~~ 779 (806)
=...|-....-=.+ |+.++|.+++.+....+.+|..
T Consensus 93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 24444443333344 8888888888888777666544
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.64 E-value=1.3 Score=41.63 Aligned_cols=122 Identities=7% Similarity=-0.058 Sum_probs=86.1
Q ss_pred HHHHHHHHhHhccCCcchhHHHHHHH-HHHhc--CC------hhhHHHHHHHHhhcCCCCC---hhhHHHHHHHHHh---
Q 047492 114 LMVDFLENYKKDRYYHQVRFNDTLVM-GYALA--GK------PDIALHLFGKMRFQGMDLD---DYAYHVLLNALVE--- 178 (806)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~~li~-~~~~~--~~------~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~--- 178 (806)
.....+..+... .+..-.|..++. .+... |. ...|...+++..+. .|+ ..+|..+...|..
T Consensus 139 ~~~~~l~~~~~~--dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp 214 (301)
T 3u64_A 139 RLHKVLSRCTRV--DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPE 214 (301)
T ss_dssp HHHHHHTTCCGG--GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHcCcc--ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCC
Confidence 344444444332 334455555554 33333 32 45677777887776 555 5588888888888
Q ss_pred --cCCcchHHHHHHHHHhcCCC-CccchHHHHHHhhcc-CCHHHHHHHHHHhHhCCCC--CCHHhHH
Q 047492 179 --QGCFDAVAVVSKQISMRGFE-NDVTRTIMLKCLCKQ-KKIDEAVEYFQQLVSGREC--VSGFMIG 239 (806)
Q Consensus 179 --~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~ 239 (806)
-|+.++|.+.|++..+.++. +..++......++.. |+.+++.+.+++.....+. |+....+
T Consensus 215 ~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 215 SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 48999999999999999885 478888889988884 9999999999999988776 6644444
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.48 E-value=1.7 Score=34.92 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCC-CCchhHHHHHHHhhccccHHHHHHH
Q 047492 623 NLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNYDM---VVGVMNHLEGHGRQ-VTSFIGNTLLLHALKTRDLYEAWIR 698 (806)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 698 (806)
..+.+-|.+....|. ++..+-..+..++.++.+... ++.+++.+.+.+.+ -..-....+..++++.|++..|.+.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344445554444443 666666667777777776655 77777777665311 1122223333445555555555555
Q ss_pred HHhhhhccCcc
Q 047492 699 LRGMLINEQSK 709 (806)
Q Consensus 699 ~~~~~~~~~~~ 709 (806)
++.++...|.+
T Consensus 97 ~~~lL~~eP~n 107 (126)
T 1nzn_A 97 VRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhCCCC
Confidence 55555444433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.00 E-value=1.6 Score=35.11 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 047492 427 KFEQMKDLVIFALERNIKLRDVTYDKFISALCKANKVEV---GYLIHSELSRMN-KVASENTYIQLIHGFNKSNRADIAA 502 (806)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~ 502 (806)
....+.+-+......| .++..+-..+..++.++.+... ++.+++++.+.+ +.-.......|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555555555 3666666667777777776655 777777776654 1113444556677888888888888
Q ss_pred HHHHHHHHCCCCCCH
Q 047492 503 RLLVEMEENGHKPTR 517 (806)
Q Consensus 503 ~~~~~m~~~~~~p~~ 517 (806)
+.++.+.+ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 88888887 56653
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.05 E-value=17 Score=37.41 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHhC--CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCcch--hh
Q 047492 204 TIMLKCLCKQKKIDEAVEYFQQLVSG--RECVS---GFMIGIVVDALCKNSRFEQAGKLLEDFKDR---DDVVKLE--KA 273 (806)
Q Consensus 204 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~--~~ 273 (806)
..|...+...|++.+|.+++..+... +.... ...+..-+..|...+++..|..++...... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666677777777776666432 11111 234555556666666666666666554321 0111211 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSK 297 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~ 297 (806)
+..++..+...+++.+|-+.|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444455555555555544443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.88 E-value=4.3 Score=33.66 Aligned_cols=54 Identities=7% Similarity=-0.064 Sum_probs=29.4
Q ss_pred CCcchHHHHHHHHHhcCCCCccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 180 GCFDAVAVVSKQISMRGFENDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
++.++|.++|+.+......=...|.....--.+.|++..|.+++...+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 556666666666655411112233333333446677777777777777666544
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.26 E-value=21 Score=36.56 Aligned_cols=94 Identities=14% Similarity=-0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCCCH--HH
Q 047492 311 NFLVSRLLKENRLMEVFDLFMDMKEG--QISPD---GVTMNTVLCFFCKAGMVDVAIELYKSRSE----FGLSPNG--IV 379 (806)
Q Consensus 311 ~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~--~~ 379 (806)
..|...+...|++.+|.+++.++... |.... ...+...++.|...+++..|..+++.+.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556667777777777777776532 22111 23455566777777888887777776532 2212221 34
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~ 404 (806)
+...+..+...+++.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555666667777777777776664
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.73 E-value=2 Score=47.10 Aligned_cols=53 Identities=13% Similarity=-0.073 Sum_probs=37.7
Q ss_pred HHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHH
Q 047492 717 IGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRM 770 (806)
Q Consensus 717 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m 770 (806)
+..+...|+++-|+++.+++... .|-+-.+|..|..+|.. |+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445567777778887777775 34456778888888888 8888887776665
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.60 E-value=36 Score=38.29 Aligned_cols=179 Identities=11% Similarity=-0.009 Sum_probs=78.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCCchhHHHHHHHhhc
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYE--ELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSFIGNTLLLHALK 688 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 688 (806)
.+.-++...|+.+.+..+.+.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+..-.-.+.-+...
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhc
Confidence 3344444567777777776666652 122111111 22334556677666666777666432 1111111111112222
Q ss_pred cccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccc-hhhHHHHHHHHHcCCCCChhhHHHHHHHHhh---h------
Q 047492 689 TRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKV-SQDIEGLQKMIEQCFPLDTYTYNILLRRLSV---S------ 758 (806)
Q Consensus 689 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---g------ 758 (806)
.|+.+...+.+........+.+.---.+.-+....|.. .+++..+..+.. .+|..+-...+.+++. |
T Consensus 607 ~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp SSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccc
Confidence 33333333333333332333332222222233333332 567778887765 3455544445555554 2
Q ss_pred -cHHHHHHHHHHHHH-cCCCCChhhHHHHHhhhhccCC
Q 047492 759 -EIDHACELFNRMRR-KGYEPDQWTFDILKCGLYNCLR 794 (806)
Q Consensus 759 -~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~ 794 (806)
+....++.+..... +.-.++...-..+..++.+.|.
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 22222332222222 2223444444556666666664
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.50 E-value=4.2 Score=44.59 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEM 508 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 508 (806)
+...|+++.|.++.+.....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455566666655555544333 4555666666666666666666555554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.88 E-value=2.1 Score=43.29 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=58.7
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHHHHHHHH-----cCCCCChhhHHHHH
Q 047492 713 LGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACELFNRMRR-----KGYEPDQWTFDILK 786 (806)
Q Consensus 713 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 786 (806)
...++..+...|+.++|+..++.+... -+.+...|..++.++.. |+..+|+..|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455677777888888888888888876 46677788899999988 999999988888764 38999887766444
Q ss_pred hhh
Q 047492 787 CGL 789 (806)
Q Consensus 787 ~~~ 789 (806)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.56 E-value=23 Score=33.91 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCChhhHHHHH
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFD----LFMDMKEGQISPDGVTMNTVL 349 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~~~~~~~~~ll 349 (806)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++...+.+++++......++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga----------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA----------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344445677777777777665432 12344555444333 455555667777776666666
Q ss_pred HHHHHcCChH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 350 CFFCKAGMVD-VAIELYKSRS----EFG--LSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 350 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
..+.....-+ .-.++++.+. +.| -.-+......+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655432211 1122333322 121 1235556666666677777776666655
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.47 E-value=2.3 Score=34.41 Aligned_cols=87 Identities=8% Similarity=-0.099 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc---cchhhHHHHHHHHHcCCCCChhhHHHHHHHHhh-hcHHHHHHH
Q 047492 691 DLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI---KVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSV-SEIDHACEL 766 (806)
Q Consensus 691 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-g~~~~A~~~ 766 (806)
++....+.+..-. +..++..+-..++.++.+.. +..+++.+++++.+.+..-....+--|.-++.+ |++++|.+.
T Consensus 22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y 100 (134)
T 3o48_A 22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444443332 44445555555555555443 444677777777765411123344455556666 777777777
Q ss_pred HHHHHHcCCCCChh
Q 047492 767 FNRMRRKGYEPDQW 780 (806)
Q Consensus 767 ~~~m~~~g~~p~~~ 780 (806)
.+.+.+. +|+-.
T Consensus 101 ~d~lL~~--eP~N~ 112 (134)
T 3o48_A 101 VDTLFEH--ERNNK 112 (134)
T ss_dssp HHHHHTT--CTTCH
T ss_pred HHHHHhh--CCCCH
Confidence 7777653 55443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.19 E-value=5.7 Score=30.10 Aligned_cols=61 Identities=5% Similarity=-0.023 Sum_probs=34.4
Q ss_pred hHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHH
Q 047492 113 PLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLN 174 (806)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 174 (806)
-.+.+-+..+.....-|++.+..+.+.+|.|.+++..|+++|+..+..- .+....|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3455556666666666666666666666666666666666666665331 122334555443
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.66 E-value=4.9 Score=30.45 Aligned_cols=63 Identities=5% Similarity=-0.103 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccchHHHHHH
Q 047492 147 PDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVTRTIMLKC 209 (806)
Q Consensus 147 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 209 (806)
.-+..+-++.+-...+.|++....+.+++|.+.+++..|..+++.++..-.....+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 334555566666666666777777777777777777777777766665543334445555543
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.13 E-value=3.9 Score=41.27 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHh
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE-----NGHKPTRAL 519 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 519 (806)
...++..+...|+.+++...+..+....+. +...|..+|.++.+.|+..+|++.|++..+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344667777888888888888887776655 777888888888888888888888887654 378887654
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.56 E-value=42 Score=39.48 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047492 343 VTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNG----IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSIL 418 (806)
Q Consensus 343 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (806)
.-|..++..+-+.+.++.+.++-+...+..-..+. ..|..+.+++...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34677888888899999888887766553212221 2578889999999999999999988876543 34567777
Q ss_pred HHHHHhcCChhH
Q 047492 419 ADALCRDGKFEQ 430 (806)
Q Consensus 419 l~~~~~~g~~~~ 430 (806)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777776544
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.04 E-value=35 Score=32.98 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCChhhHHHHH
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEV----FDLFMDMKEGQISPDGVTMNTVL 349 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~~~g~~~~~~~~~~ll 349 (806)
|.++..-|.+.+++++|++++..-. ..+.+.|+...+ .-+++...+.++++|......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344444667777777777655432 123444554433 33334555566666666666666
Q ss_pred HHHHHcCChH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 047492 350 CFFCKAGMVD-VAIELYKSRSE----FG--LSPNGIVYNYLINSLCGDGSTHEAYEVL 400 (806)
Q Consensus 350 ~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 400 (806)
..+.....-+ .-.++++++.+ .| -.-|......+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5554433211 11122222211 11 1234444555555666666666655554
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.25 E-value=63 Score=34.68 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=71.5
Q ss_pred hhhhhhccCCCCcCCHHHHHHHHHHHHhCCChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 047492 81 KFFDWAGRQPHFHHTRATFHAIFKLLHCAKLTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQ 160 (806)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 160 (806)
++-.++.+.++.+.....-...+..+++.+++..+..++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 56666777777777777777888889988887766664432 2456666667777888889988888888888766
Q ss_pred CCCCChhhHHHHHHHHHhcCCcch
Q 047492 161 GMDLDDYAYHVLLNALVEQGCFDA 184 (806)
Q Consensus 161 ~~~p~~~~~~~ll~~~~~~~~~~~ 184 (806)
| ...+..+..++..+.+.|....
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCH
Confidence 5 3356778888888888776644
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.23 E-value=13 Score=29.99 Aligned_cols=80 Identities=8% Similarity=-0.004 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhCCC--hhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHH
Q 047492 94 HTRATFHAIFKLLHCAKL--TPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHV 171 (806)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 171 (806)
.+.+.|...-......-+ .-++.+-++.+.....-|++.+..+.+.+|.+.+++..|+++|+-.+.. +.+....|..
T Consensus 49 Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y 127 (152)
T 2y69_E 49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPY 127 (152)
T ss_dssp CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHH
T ss_pred CcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHH
Confidence 345556555544443333 3345666667766677777777777777777777777777777777644 1223445665
Q ss_pred HHH
Q 047492 172 LLN 174 (806)
Q Consensus 172 ll~ 174 (806)
+++
T Consensus 128 ~lq 130 (152)
T 2y69_E 128 VIQ 130 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.88 E-value=46 Score=39.19 Aligned_cols=165 Identities=9% Similarity=0.011 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRD 425 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 425 (806)
..++..+...+..+.+.++..-. +.+...--.+..+|...|++++|.+.|++.- .|+..+....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------
Confidence 34556666777777776655432 2344443445667888899999999987642 1121110000
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHH
Q 047492 426 GKFEQMKDLVIFALERN--IKLRDVTYDKFISALCKANKVEVGYLIHSELSRMNKVASE----NTYIQLIHGFNKSNRAD 499 (806)
Q Consensus 426 g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 499 (806)
..... +..+.... ...-..-|..++..+.+.+.++.+.++.....+.....+. ..|..+.+.+...|+++
T Consensus 880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00000 01111110 1112234555666666666666666655544432211111 14566666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 047492 500 IAARLLVEMEENGHKPTRALHRAVIRCLCNMET 532 (806)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 532 (806)
+|...+-.+.....+ ...+..++..+|..+.
T Consensus 956 ~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 956 AAHVALMVLSTTPLK--KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp GGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCC
Confidence 776666666554332 3445556666665555
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.71 E-value=5.9 Score=36.70 Aligned_cols=54 Identities=20% Similarity=0.103 Sum_probs=34.3
Q ss_pred hhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHc
Q 047492 686 ALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQ 739 (806)
Q Consensus 686 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 739 (806)
.++.|++.+++..+...++..|.|...-..|+..++-.|++++|...++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666666666666666666666666666666666666666666654
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.66 E-value=60 Score=32.38 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=64.8
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 047492 557 FFIDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHN- 635 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~- 635 (806)
-++..|...|++.+|.+++.++.+.=-..|..++. + ..|..-+..|...+++.++...+......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~l--l------------ev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLL--V------------EVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHH--H------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhH--H------------HHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 57788999999999999999888631122322211 1 13667788899999999999998877652
Q ss_pred -CCCCCHHHHHH----HHHHHH-cCCChhHHHHHHHHHH
Q 047492 636 -GMYPSMECYEE----LIKLLC-STKNYDMVVGVMNHLE 668 (806)
Q Consensus 636 -g~~p~~~~~~~----l~~~~~-~~g~~~~A~~~~~~~~ 668 (806)
.+.+++..... -...+. ..++|..|...|-+..
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 23344433221 112244 7899999988776654
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.45 E-value=61 Score=32.34 Aligned_cols=232 Identities=11% Similarity=-0.013 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCC
Q 047492 487 QLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVK 566 (806)
Q Consensus 487 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 566 (806)
.++..|...|++.+|.+++.++.+.=.+.|..++ -..+|-.-+..|...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~------------------------------llev~lle~~~~~~~~ 153 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNL------------------------------LVEVQLLESKTYHALS 153 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh------------------------------HHHHHHHHHHHHHHhc
Confidence 6788899999999999999988763111121110 1223555677788889
Q ss_pred ChHHHHHHHHHHHHC--CCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHH-hcCChHHHHHHHHHHHhC-C-C-CC-
Q 047492 567 RPDLARAVYELMQRS--GLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLC-KAMKANLAWGFMREMRHN-G-M-YP- 639 (806)
Q Consensus 567 ~~~~a~~~~~~m~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~-g-~-~p- 639 (806)
+..++...+...... .+.+++.. ... ....-...+. ..++|.+|...|-+..+. . . .|
T Consensus 154 n~~k~k~~l~~a~~~~~ai~~~p~i-~a~--------------i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~ 218 (394)
T 3txn_A 154 NLPKARAALTSARTTANAIYCPPKV-QGA--------------LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVK 218 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHH-HHH--------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred cHHHHHHHHHHHHhhhccCCCCHHH-HHH--------------HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHH
Confidence 999999999887642 22122211 000 0222233455 789999998887765431 0 1 11
Q ss_pred --CHHHHHHHHHHHHcCCChhHHHHHHH-HHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHH
Q 047492 640 --SMECYEELIKLLCSTKNYDMVVGVMN-HLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQL 716 (806)
Q Consensus 640 --~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 716 (806)
+...|..+.. . -.++..+...++. .....-..|....+..++ ..+..+++.+-...+.........|......+
T Consensus 219 ~~~~lkYlvL~a-L-l~~~r~el~~~l~~~~~~~~~~pei~~l~~L~-~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~ 295 (394)
T 3txn_A 219 ALTSLKYMLLCK-I-MLGQSDDVNQLVSGKLAITYSGRDIDAMKSVA-EASHKRSLADFQAALKEYKKELAEDVIVQAHL 295 (394)
T ss_dssp HHHHHHHHHHHH-H-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHH-HHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHH
T ss_pred HHHHHHHHHHHH-H-HcCCHHHHHHHhccccccccCCccHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 1122322222 1 2334444443332 111111223322233333 34566777666666666554444555433222
Q ss_pred HHhhhccccchhhHHHHHHHHHcCCCCChhhHHHHHHHHhhhcHHHHHHHHHHHHHcCC
Q 047492 717 IGVFSGCIKVSQDIEGLQKMIEQCFPLDTYTYNILLRRLSVSEIDHACELFNRMRRKGY 775 (806)
Q Consensus 717 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~g~~~~A~~~~~~m~~~g~ 775 (806)
-..+.+- -...+.++. .+-...+...+...... ..+++...+-+|...|.
T Consensus 296 ~~L~~~I-----r~~~L~~i~---~pYsrIsl~~iA~~l~l-s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 296 GTLYDTM-----LEQNLCRII---EPYSRVQVAHVAESIQL-PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHH-----HHHHHHHHH---TTCSEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH-----HHHHHHHHh---HhhceeeHHHHHHHHCc-CHHHHHHHHHHHHHCCC
Confidence 1111000 011111111 13355666666655544 56777888888887764
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.34 E-value=15 Score=37.59 Aligned_cols=92 Identities=10% Similarity=-0.054 Sum_probs=45.6
Q ss_pred hHHHHHHhhhccccchhhHHHHHHHHHcCCCCC--hhhHHHHHHHHhh-hcHHHHHHHHHHHHHc---CCCCChhhH--H
Q 047492 712 LLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLD--TYTYNILLRRLSV-SEIDHACELFNRMRRK---GYEPDQWTF--D 783 (806)
Q Consensus 712 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~-g~~~~A~~~~~~m~~~---g~~p~~~~~--~ 783 (806)
+...++..|.++|+.++|.+.+.++......+. ...|-..+..+.. +++..+...+++.... +..|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444556666666666666666666665432222 2344455555555 6666666666555432 222222111 1
Q ss_pred HHHhhhhccCCHHHHHHHHH
Q 047492 784 ILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 784 ~l~~~~~~~g~~~eA~~~l~ 803 (806)
.-+..+...+++.+|...|-
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~ 232 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLV 232 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHH
Confidence 12222344566666655554
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.24 E-value=31 Score=27.86 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047492 395 EAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDLVIFALERNIKLRDVTYDKFI 454 (806)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 454 (806)
+..+-++.+....+.|++......+++|.+.+++..|.++|+-+..+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444555555555666666666666666666666666666666654432 22333444443
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.36 E-value=24 Score=32.72 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=26.4
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047492 458 CKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEE 510 (806)
Q Consensus 458 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 510 (806)
.+.|+++.+.+....-++..+. |...-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555555444444443 444555555555555555555555554444
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.97 E-value=33 Score=29.04 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhh
Q 047492 275 DVWLRNLVRAGRLDLALEFLKSKNS 299 (806)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~~~~ 299 (806)
-.+..+|.+.+++++|+.+++.+..
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3355556666666666666666543
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.07 E-value=44 Score=27.41 Aligned_cols=73 Identities=8% Similarity=-0.009 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCchhHHHHHHHhhccccHHHHHHHHHhhhhccCcch
Q 047492 638 YPSMECYEELIKLLCSTKNY---DMVVGVMNHLEGHGRQVTSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSKI 710 (806)
Q Consensus 638 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 710 (806)
.|+..+--.+..++.++.+. .+++.+++.+.+.+..-..-....+..++++.|++..|.+..+.++...|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 56666666666777766644 45666777776654332333334444455566666666666666555544443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.48 E-value=34 Score=25.87 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 316 RLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
.+.+.|++++|..+.+.+. .||...+..|.. .+.|..++++.-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555555544332 355555444432 24455555555554444443
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.52 E-value=46 Score=26.95 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047492 444 KLRDVTYDKFISALCKANKV---EVGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRA 518 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (806)
.|+..+--.+..++.++.+. .+++.+++++.+.++.-....+..+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 56666666666677776654 35677777777655432455666777788888888888888888877 566643
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.06 E-value=37 Score=31.82 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=23.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcCChHHHHHHHH
Q 047492 318 LKENRLMEVFDLFMDMKEGQISPDGVT--MNTVLCFFCKAGMVDVAIELYK 366 (806)
Q Consensus 318 ~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~ 366 (806)
+..++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444444555555566665544321 1223344455666554444443
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.63 E-value=96 Score=29.96 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHH
Q 047492 380 YNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILADALCRDGKFEQMKDL----VIFALERNIKLRDVTYDKFIS 455 (806)
Q Consensus 380 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~ 455 (806)
|.++..-|.+.+++++|++++..-- ..+.+.|+...+-++ ++-..+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344455666677777777654421 112223333332222 233344455555555555555
Q ss_pred HHHhcCChhH-HHHHHHHHh----hcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047492 456 ALCKANKVEV-GYLIHSELS----RMN--KVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLC 528 (806)
Q Consensus 456 ~~~~~~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 528 (806)
.+.....-+- =.++.+.+. +.+ ...|+.....+...|.+.+++.+|...|- .|-.+....+..++..+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 5544432111 111222221 112 34477788888889999999999888773 233444466666665554
Q ss_pred ccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHHHHHHHHHHHH
Q 047492 529 NMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDLARAVYELMQR 580 (806)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 580 (806)
...... ..+..+-.+++ -|...++...|..+|+...+
T Consensus 179 ~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 433311 11122222222 35566888888887766553
No 266
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=66.09 E-value=41 Score=31.21 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLED 260 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~ 260 (806)
++.-++..+.+...+-+++..|+.
T Consensus 231 s~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 231 TIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp CHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred eHHHHHHHHHhCHHHHHHHHhhcc
Confidence 455555555555555555555544
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.59 E-value=32 Score=25.94 Aligned_cols=51 Identities=10% Similarity=-0.034 Sum_probs=23.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 047492 316 RLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFG 372 (806)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 372 (806)
.+.+.|++++|..+.+.+. .||...+..|.. .+.|..++++.-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555554443322 345444444322 24455555555554444433
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.03 E-value=33 Score=29.03 Aligned_cols=120 Identities=6% Similarity=-0.084 Sum_probs=57.4
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHhHhCC-CCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchh-h
Q 047492 203 RTIMLKCLCKQKKIDEAVEYFQQLVSGR-ECVS-------GFMIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEK-A 273 (806)
Q Consensus 203 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~ 273 (806)
+-.-++.+...|.++.|+-+.+.+.... ..++ ..++..+.+++...|++..|...|++.......-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3334444455555555555554433221 1111 12455666777777888888777777433211111110 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047492 274 YDVWLRNLVRAGRLDLALEFLKSKNSLEGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEG 336 (806)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (806)
...+- . ..... .......+...--.+-.+|.+.+++++|+.+++.+...
T Consensus 103 ~~~~~-~---~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTG-N---SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc-c---cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 10000 0 00000 00111223334444678899999999999999887543
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.33 E-value=70 Score=26.26 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhcCChh---HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047492 444 KLRDVTYDKFISALCKANKVE---VGYLIHSELSRMNKVASENTYIQLIHGFNKSNRADIAARLLVEMEENGHKPTR 517 (806)
Q Consensus 444 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (806)
.|+..+--.+..++.++.+.+ ++..+++++.+.++.-.......|.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 466666666666777666543 5667777776655443445556677788888888888888888887 56654
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.27 E-value=1.1e+02 Score=30.07 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHHHhhccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccc--cchhhHHHHHHHHHcCCC
Q 047492 680 NTLLLHALKTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCI--KVSQDIEGLQKMIEQCFP 742 (806)
Q Consensus 680 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~ 742 (806)
+.++.-|...++..+|.+.++++.........+..++..+.-+.+ ..+....++..+.+.|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 445556666677777777776665333333444444544544432 233455666666665433
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.23 E-value=43 Score=34.14 Aligned_cols=62 Identities=11% Similarity=-0.164 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCcchhhHHHHHHHHHHcCCHHHHHHHHHhhh
Q 047492 237 MIGIVVDALCKNSRFEQAGKLLEDFKDR-DDVVKLEKAYDVWLRNLVRAGRLDLALEFLKSKN 298 (806)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 298 (806)
+...+...|.+.|+++.|.+.|.++... .+...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555566666665555555442 0111222345555555556666666665555543
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.18 E-value=45 Score=29.29 Aligned_cols=52 Identities=13% Similarity=-0.010 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhcCCCC--ccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 182 FDAVAVVSKQISMRGFEN--DVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
...+.++|..|...++.. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345566666666555532 2345555566666666666666666666665545
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.98 E-value=98 Score=30.29 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHhHH
Q 047492 450 YDKFISALCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR--ADIAARLLVEMEENGHKPTRALHR 521 (806)
Q Consensus 450 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~ 521 (806)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+...|+-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 466778888888888888888888432111 23334455555555433 356777777777777665544433
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.08 E-value=60 Score=28.50 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 565 VKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 565 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
.+...++.++|..|...|+--.... -|......+...|++.+|..+|+.-++.+-+|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Al------------------fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSL------------------FYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4557799999999999888766554 38888888999999999999999999998888543
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.55 E-value=1.4e+02 Score=30.13 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=7.8
Q ss_pred HHhcCCHHHHHHHHH
Q 047492 245 LCKNSRFEQAGKLLE 259 (806)
Q Consensus 245 ~~~~g~~~~A~~~~~ 259 (806)
.+..|+.+-+..+++
T Consensus 120 A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 120 AAREGHVETVLALLE 134 (437)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 345566555555544
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.28 E-value=2.4e+02 Score=30.34 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=11.3
Q ss_pred HcCCChhHHHHHHHHH
Q 047492 652 CSTKNYDMVVGVMNHL 667 (806)
Q Consensus 652 ~~~g~~~~A~~~~~~~ 667 (806)
...|+++.|.+.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5677888887776664
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=52.88 E-value=1.6e+02 Score=28.11 Aligned_cols=51 Identities=12% Similarity=-0.097 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 047492 359 DVAIELYKSRSEFGLSPNG--IVYNYLINSLCGDGSTHEAYEVLKNSIDHGLF 409 (806)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 409 (806)
....++-.-+....+.|.. -+...-|....+.+++..|..+-+++.+.+..
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3444444444444444432 24555667777888888888888888877543
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.66 E-value=1.1e+02 Score=27.51 Aligned_cols=191 Identities=12% Similarity=0.015 Sum_probs=88.7
Q ss_pred HHhhhcCCChHHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047492 559 IDGAGHVKRPDLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMY 638 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 638 (806)
+...+..|+.+.+..+++.+.+.+..++... ..-++ .+...+..|+.+ +++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~----------------~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~ 71 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYN----------------NLRQT-PLHLAVITTLPS----VVRLLVTAGAS 71 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC----------------TTSCC-HHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCccc----------------ccCCC-HHHHHHHcCCHH----HHHHHHHcCCC
Confidence 3344567888888888887777666655432 11122 333444566654 45555566665
Q ss_pred CCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc--hhHHHHHHHhhccccHHHHHHHHHhhhhccCcc-hhhH
Q 047492 639 PSMEC--YEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTS--FIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK-ISLL 713 (806)
Q Consensus 639 p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 713 (806)
++... -.+.+...+..|+.+-+..+++.....+..++. ....+.+...+..|+.+-...+++.-..-...+ ..-.
T Consensus 72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~ 151 (241)
T 1k1a_A 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151 (241)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCC
Confidence 54321 112334455677776666665553321112211 111223334445565555444444322111111 1111
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHcCCCCChh---hHHHHHHHHhhhcHHHHHHHHHHHHHcCCCCCh
Q 047492 714 GQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDTY---TYNILLRRLSVSEIDHACELFNRMRRKGYEPDQ 779 (806)
Q Consensus 714 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~g~~~~A~~~~~~m~~~g~~p~~ 779 (806)
+.| ...+..|+ .++++.+.+.|..++.. ..+.|-.+...|+.+ +.+.+.+.|..|+.
T Consensus 152 t~L-~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 152 SPL-IHAVENNS----LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp CHH-HHHHHTTC----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred cHH-HHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 122 22223343 45666666666555432 233333333336654 44445556766553
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.35 E-value=1.5e+02 Score=27.34 Aligned_cols=83 Identities=6% Similarity=-0.128 Sum_probs=41.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 047492 314 VSRLLKENRLMEVFDLFMDMKEGQISPD---GVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIV--YNYLINSLC 388 (806)
Q Consensus 314 i~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~ 388 (806)
+...+..|+.+-+..+++. .|..++ ....+.+ ...+..+......++++.+.+.|..++... -.+.+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 3344556665544444432 133332 2223333 334456666666677777777776554321 122344445
Q ss_pred cCCChhHHHHHH
Q 047492 389 GDGSTHEAYEVL 400 (806)
Q Consensus 389 ~~g~~~~a~~~~ 400 (806)
+.|+.+-+..++
T Consensus 228 ~~~~~~~v~~Ll 239 (285)
T 1wdy_A 228 EKKHLGLVQRLL 239 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 667765444443
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.83 E-value=1.3e+02 Score=30.45 Aligned_cols=172 Identities=12% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCch--hHHHHHHHhh
Q 047492 613 IVGLCKAMKANLAWGFMREMRHNGMYPSME---CYEELIKLLCSTKNYDMVVGVMNHLEGHGRQVTSF--IGNTLLLHAL 687 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 687 (806)
+...+..|+.+ +++.+.+.|..++.. ..+ .+...+..|..+-+ +.+.+.+..++.. ...+.+....
T Consensus 216 L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~ 286 (437)
T 1n11_A 216 LHIAAKQNQVE----VARSLLQYGGSANAESVQGVT-PLHLAAQEGHAEMV----ALLLSKQANGNLGNKSGLTPLHLVA 286 (437)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 33445566654 444445555444322 122 33344556665443 3444455443321 1122334445
Q ss_pred ccccHHHHHHHHHhhhhccCcchhhHHHHHHhhhccccchhhHHHHHHHHHcCCCCCh---hhHHHHHHHHhhhcHHHHH
Q 047492 688 KTRDLYEAWIRLRGMLINEQSKISLLGQLIGVFSGCIKVSQDIEGLQKMIEQCFPLDT---YTYNILLRRLSVSEIDHAC 764 (806)
Q Consensus 688 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~g~~~~A~ 764 (806)
..|+.+-...+++.-..-...+..-.+.|.. .+..|+ .++.+.+.+.|..++. ..++.|-.+...|..+
T Consensus 287 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~----~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~--- 358 (437)
T 1n11_A 287 QEGHVPVADVLIKHGVMVDATTRMGYTPLHV-ASHYGN----IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD--- 358 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH-HHHSSC----SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---
T ss_pred HcCCHHHHHHHHhCCccCCCCCCCCCCHHHH-HHHcCc----HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH---
Confidence 5666655544444322111111111122222 233444 3455666676655543 3344454444446654
Q ss_pred HHHHHHHHcCCCCChhhH--HHHHhhhhccCCHHHHHHHHH
Q 047492 765 ELFNRMRRKGYEPDQWTF--DILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 765 ~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~eA~~~l~ 803 (806)
+.+.+.+.|..|+...- .+-+....+.|. .+..++++
T Consensus 359 -iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~-~~~~~~l~ 397 (437)
T 1n11_A 359 -IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY-ISVTDVLK 397 (437)
T ss_dssp -HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC-HHHHHHHH
T ss_pred -HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHH
Confidence 55556677887765321 112233345565 34444443
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.06 E-value=77 Score=26.40 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCC--CccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 185 VAVVSKQISMRGFE--NDVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 185 a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
+.++|..|...++. -..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55555555555443 22245555555556666666666666666555544
No 282
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=47.34 E-value=2e+02 Score=27.60 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHH
Q 047492 100 HAIFKLLHCAKLTPLMVDFLEN 121 (806)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~l~~ 121 (806)
+..+...++.|+.+.+..+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC
Confidence 3344455667777766666654
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.22 E-value=1.5e+02 Score=26.49 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=8.5
Q ss_pred hccCCHHHHHHHHHHhHhC
Q 047492 211 CKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~ 229 (806)
+..|+.+....+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3444554444444444333
No 284
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=46.86 E-value=92 Score=23.59 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.2
Q ss_pred HcCCChhHHHHH
Q 047492 388 CGDGSTHEAYEV 399 (806)
Q Consensus 388 ~~~g~~~~a~~~ 399 (806)
...|++++|..+
T Consensus 50 mNrG~Yq~Al~l 61 (115)
T 2uwj_G 50 ANQGRYQEALAF 61 (115)
T ss_dssp HHTTCHHHHHGG
T ss_pred HcchhHHHHHHh
Confidence 344444444443
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.80 E-value=96 Score=23.52 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=5.5
Q ss_pred HHcCChHHHHHHH
Q 047492 353 CKAGMVDVAIELY 365 (806)
Q Consensus 353 ~~~g~~~~a~~~~ 365 (806)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3344444444433
No 286
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.68 E-value=15 Score=23.84 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=16.8
Q ss_pred HHHHHHHcCCCCChhhHHHHHhhhhccCC--HHHHHHHHHhh
Q 047492 766 LFNRMRRKGYEPDQWTFDILKCGLYNCLR--TDEAERRLEEM 805 (806)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~eA~~~l~~m 805 (806)
.++++.+.|+.++. ...|+.+.|. ++.|++++.+|
T Consensus 12 mlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 12 MLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHh
Confidence 34444455554432 2234444454 56666665554
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.54 E-value=49 Score=28.03 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
+++.++|..|...|+--.... .|......+-..|++.+|..+|+.-++.+-+|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al------------------fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ------------------FYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 447789999999988766554 27788888888999999999999999988888654
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.36 E-value=1.1e+02 Score=25.82 Aligned_cols=51 Identities=8% Similarity=-0.047 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCCC--ccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCCC
Q 047492 184 AVAVVSKQISMRGFEN--DVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECVS 234 (806)
Q Consensus 184 ~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 234 (806)
...++|..|...++.. ..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3555666666665532 23455556666666777777777776666665553
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.30 E-value=1.4e+02 Score=30.82 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCccc------h-HHHHHHhhccCCHHHHHHHHHHhHh
Q 047492 167 YAYHVLLNALVEQGCFDAVAVVSKQISMRGFENDVT------R-TIMLKCLCKQKKIDEAVEYFQQLVS 228 (806)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~-~~li~~~~~~g~~~~a~~~~~~~~~ 228 (806)
..+|.+++.|...+.++.|..+..... .+.+... | --+...+.-.+++.+|.+.+....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355666666666666666666666553 1111111 1 1223444455666666666555544
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.62 E-value=1.2e+02 Score=26.32 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHH
Q 047492 246 CKNSRFEQAGKLLE 259 (806)
Q Consensus 246 ~~~g~~~~A~~~~~ 259 (806)
+..|+.+-+..+++
T Consensus 80 ~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 80 GAQGRTEILAYMLK 93 (201)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444443
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.34 E-value=78 Score=27.43 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCC
Q 047492 313 LVSRLLKENRLMEVFDLFMDMKEGQISPDGV---TMNTVLCFFCK-AGMVDVAIELYKSRSEFGLSPN 376 (806)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~ 376 (806)
.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3444455566555556666666666655432 22223222221 1223344555566666665544
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.29 E-value=2.4e+02 Score=26.88 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=14.7
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHH
Q 047492 270 LEKAYDVWLRNLVRAGRLDLALEFLK 295 (806)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (806)
+......+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33455555566666666666665543
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.35 E-value=95 Score=29.67 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=17.3
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHH
Q 047492 556 NFFIDGAGHVKRPDLARAVYELMQ 579 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~m~ 579 (806)
..++.-|...|+.++|...++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 456667777788888887777764
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.72 E-value=2.2e+02 Score=29.40 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=48.5
Q ss_pred hhhHHHHHHhhhcCCChHHHHHHHHHHHHCCCccCc-chhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 047492 552 FQIYNFFIDGAGHVKRPDLARAVYELMQRSGLVPQL-GSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMR 630 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 630 (806)
..++|.+++.|...+.++.|..+..+.. .|.. .+..... .| +-.+...+.-.+++.+|.+.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~-rY-----------~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEA-RY-----------FFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHH-HH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHH-HH-----------HHHHHHHHHHhccHHHHHHHHH
Confidence 3458999999999999999999999885 2322 2211111 11 3356667778999999999988
Q ss_pred HHHhC
Q 047492 631 EMRHN 635 (806)
Q Consensus 631 ~m~~~ 635 (806)
.....
T Consensus 295 ~A~rk 299 (523)
T 4b4t_S 295 AAIRK 299 (523)
T ss_dssp HHTSS
T ss_pred HHHHh
Confidence 87764
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.09 E-value=1e+02 Score=27.63 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=3.9
Q ss_pred HHHcCCHHHH
Q 047492 281 LVRAGRLDLA 290 (806)
Q Consensus 281 ~~~~g~~~~a 290 (806)
.+..|+.+-+
T Consensus 49 A~~~~~~~~v 58 (240)
T 3eu9_A 49 AAINNRIDLV 58 (240)
T ss_dssp HHHTTCHHHH
T ss_pred HHHhCCHHHH
Confidence 3344444333
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.82 E-value=1.5e+02 Score=26.87 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 047492 375 PNGIVYNYLINSLCGDGSTHEAYEVLKN 402 (806)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~a~~~~~~ 402 (806)
++.......+..+.+.|+.++|.++|=+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3344444445555555555555555543
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.18 E-value=1e+02 Score=25.33 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNY 657 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 657 (806)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344555555555566777777777666566666655555666655543
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.15 E-value=1.3e+02 Score=26.00 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=7.1
Q ss_pred HhCCChhHHHHHHH
Q 047492 107 HCAKLTPLMVDFLE 120 (806)
Q Consensus 107 ~~~~~~~~~~~~l~ 120 (806)
+..|+.+.+..++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34455555555554
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.99 E-value=1.1e+02 Score=27.50 Aligned_cols=8 Identities=0% Similarity=-0.110 Sum_probs=3.3
Q ss_pred HHhcCCHH
Q 047492 317 LLKENRLM 324 (806)
Q Consensus 317 ~~~~~~~~ 324 (806)
.+..|+.+
T Consensus 184 A~~~~~~~ 191 (240)
T 3eu9_A 184 AVLAGNTT 191 (240)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 33444443
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.15 E-value=1.8e+02 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHH
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHL 667 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~ 667 (806)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444455555555555555554
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.66 E-value=1e+02 Score=25.62 Aligned_cols=48 Identities=8% Similarity=0.075 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNY 657 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 657 (806)
..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345555555555666777777777666566666655555556555543
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.62 E-value=2.1e+02 Score=23.82 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCC
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS--THEAYEVLKNSIDHGLF 409 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 409 (806)
..++.=|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4455556666666666666666542110 112233333344443222 33455555555555544
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.81 E-value=2.7e+02 Score=24.91 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSM 641 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 641 (806)
+++.++|..|...|+--.... .|......+...|++.+|..+|+.-++.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~Al------------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSI------------------FYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 578899999999888766554 2888888889999999999999999998888843
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.64 E-value=2.2e+02 Score=25.87 Aligned_cols=25 Identities=8% Similarity=-0.053 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhc
Q 047492 101 AIFKLLHCAKLTPLMVDFLENYKKD 125 (806)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~l~~~~~~ 125 (806)
--++.+...++|+.|.++++...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4467778888888888888877654
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.63 E-value=1.1e+02 Score=25.10 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=10.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHhCC
Q 047492 205 IMLKCLCKQKKIDEAVEYFQQLVSGR 230 (806)
Q Consensus 205 ~li~~~~~~g~~~~a~~~~~~~~~~~ 230 (806)
.++..+...+..-.|.++++.+.+.+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 33333333333334444444444433
No 306
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.27 E-value=1.1e+02 Score=24.95 Aligned_cols=47 Identities=9% Similarity=-0.001 Sum_probs=25.7
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 611 TLIVGLCKAM-KANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNY 657 (806)
Q Consensus 611 ~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 657 (806)
.++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4444454444 4556667777776665555655544455555554433
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.22 E-value=3.3e+02 Score=25.27 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=4.0
Q ss_pred HHcCCHHHHH
Q 047492 282 VRAGRLDLAL 291 (806)
Q Consensus 282 ~~~g~~~~a~ 291 (806)
+..|+.+-+.
T Consensus 169 ~~~g~~~~v~ 178 (285)
T 3kea_A 169 IKNGHVDMMI 178 (285)
T ss_dssp HHTTCHHHHH
T ss_pred HHcChHHHHH
Confidence 3444444333
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.19 E-value=1.2e+02 Score=25.27 Aligned_cols=47 Identities=6% Similarity=-0.027 Sum_probs=26.8
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 611 TLIVGLCKAM-KANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNY 657 (806)
Q Consensus 611 ~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 657 (806)
.++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4444444444 4556777777777666555666555555555555543
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.74 E-value=2.4e+02 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHH
Q 047492 645 EELIKLLCSTKNYDMVVGVMNHL 667 (806)
Q Consensus 645 ~~l~~~~~~~g~~~~A~~~~~~~ 667 (806)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44455555555555555555555
No 310
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=29.53 E-value=95 Score=19.50 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHH
Q 047492 766 LFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 766 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
-.+++.+.|+........+|.. -.|+.+.|.+++
T Consensus 10 ~i~~L~~MGF~d~~~~~~AL~~---~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRNVAALRR---SGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHH---hCCCHHHHHHHH
Confidence 3455666676433333333322 257777777765
No 311
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.19 E-value=2.9e+02 Score=24.06 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=5.9
Q ss_pred ChhhHHHHHHHHHHcC
Q 047492 341 DGVTMNTVLCFFCKAG 356 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g 356 (806)
+...-...+.++.+.|
T Consensus 125 ~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIG 140 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3333333333333333
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.16 E-value=2e+02 Score=27.89 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHh
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455666666677777766666664
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.13 E-value=1.4e+02 Score=21.35 Aligned_cols=46 Identities=7% Similarity=-0.025 Sum_probs=23.8
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 611 TLIVGLCKAM-KANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKN 656 (806)
Q Consensus 611 ~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 656 (806)
.++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444433 344555666666655555555555555555555543
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.12 E-value=94 Score=25.62 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=23.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKN 656 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 656 (806)
.++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3344444444 45566666666666555555554444455554443
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.09 E-value=2.6e+02 Score=23.52 Aligned_cols=59 Identities=14% Similarity=-0.072 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhccCCc--chhHHHHHHH------HHHhcCChhhHHHHHHHHh
Q 047492 99 FHAIFKLLHCAKLTPLMVDFLENYKKDRYYH--QVRFNDTLVM------GYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~li~------~~~~~~~~~~A~~~~~~m~ 158 (806)
|..-+..+-. |++-.+.++|+..-.....+ ...+|..||. ...+.|+..-|..+|.+..
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333333 77777777777776654444 5556666666 2333566666766666664
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.76 E-value=2.5e+02 Score=23.30 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCCccCcchhHHHHHHHHhhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047492 569 DLARAVYELMQRSGLVPQLGSNILMLQSYLKRKNGIPRKLYNTLIVGLCKAMKANLAWGFMREMRHNGMYPSME 642 (806)
Q Consensus 569 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 642 (806)
+++.++|..|.+.|+--.... .|......+...|++.+|..+|+.-++.+-+|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~Al------------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSP------------------LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 448899999999888666554 37888888899999999999999999988888543
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.65 E-value=1.3e+02 Score=22.59 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 047492 214 KKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFEQAG 255 (806)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (806)
...++|.++++.+..+|. ..|..+++++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHH
Confidence 356777777777777665 56667777776656554443
No 318
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=28.61 E-value=2.6e+02 Score=23.31 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHhccCCCCCchhHHHHHHHHHhcC-CCCCHHHHHHHHhcccCCCCchhhhhhhhhhccCCCCcCCHHHHH
Q 047492 22 WPAAKLKIFQILSTHDDEDSASRFAADQALSELG-IRLTESFALQVLNYGKKTKDVLSCLKFFDWAGRQPHFHHTRATFH 100 (806)
Q Consensus 22 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 100 (806)
.......++..+.....+ ..+...+...|...+ .++++..+..++..+...++ -..+...|.
T Consensus 5 ~~~~l~~~F~~~D~d~~G-~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~----------------g~i~~~ef~ 67 (172)
T 2znd_A 5 DQSFLWNVFQRVDKDRSG-VISDTELQQALSNGTWTPFNPVTVRSIISMFDRENK----------------AGVNFSEFT 67 (172)
T ss_dssp -CHHHHHHHHHHCTTCSS-CEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSS----------------SEECHHHHH
T ss_pred chhHHHHHHHHhCCCCCC-cCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCC----------------CcCCHHHHH
Confidence 344567777777665443 345556777777777 66777777777776543221 112222222
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhcc-CCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 047492 101 AIFKLLHCAKLTPLMVDFLENYKKDR-YYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQ 179 (806)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 179 (806)
.++.. ......+|..+...+ ...+..-+..++..+...-..+++..+|..+...+ ....+|.-.+..+...
T Consensus 68 ~~~~~------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 68 GVWKY------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHH------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTC--SSSEEHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC--CCcCcHHHHHHHHHHH
Confidence 22211 134455555554331 12333333333333222223445566666654321 1234566655555443
Q ss_pred CCcchHHHHHHHHHhc
Q 047492 180 GCFDAVAVVSKQISMR 195 (806)
Q Consensus 180 ~~~~~a~~~~~~~~~~ 195 (806)
+....+|+.+-..
T Consensus 140 ---~~~~~~F~~~D~d 152 (172)
T 2znd_A 140 ---QRLTDIFRRYDTD 152 (172)
T ss_dssp ---HHHHHHHHHHCTT
T ss_pred ---HHHHHHHHHhCCC
Confidence 4566666666444
No 319
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.11 E-value=2e+02 Score=25.66 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=5.7
Q ss_pred cCChhHHHHHHHHH
Q 047492 425 DGKFEQMKDLVIFA 438 (806)
Q Consensus 425 ~g~~~~a~~~~~~~ 438 (806)
.|+...+.++.+.+
T Consensus 220 ~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 220 NSQVWSALQMSKAL 233 (237)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444433
No 320
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.44 E-value=1.8e+02 Score=23.72 Aligned_cols=72 Identities=8% Similarity=-0.092 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCCC---hhhHHHHHHHHhhhcHHHHHHHHHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHHHhh
Q 047492 731 EGLQKMIEQCFPLD---TYTYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRLEEM 805 (806)
Q Consensus 731 ~~~~~~~~~~~~~~---~~~~~~li~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l~~m 805 (806)
++.+.+.+.|..++ ...++.|..++..|+.+-+..+++. .+.. ..|..-.. .+...++.|+.+-+.-+++.|
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t-~l~~A~~~~~~~~v~~Ll~~~ 156 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLT-PLELALQRGAQDLVDILQGHM 156 (156)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCC-HHHHHHHSCCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCC-HHHHHHHcCcHHHHHHHHhhC
Confidence 44455555554433 3344455545444776655544443 1111 11222222 233345677776666665543
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.34 E-value=1.4e+02 Score=26.81 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=28.1
Q ss_pred chHHHHHHHHHhcCCCC--ccchHHHHHHhhccCCHHHHHHHHHHhHhCCCCC
Q 047492 183 DAVAVVSKQISMRGFEN--DVTRTIMLKCLCKQKKIDEAVEYFQQLVSGRECV 233 (806)
Q Consensus 183 ~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (806)
+...++|..|...++.. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555666665555532 2245555555556666666666666655555444
No 322
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.33 E-value=2.4e+02 Score=22.58 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCC
Q 047492 346 NTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGS--THEAYEVLKNSIDHGLF 409 (806)
Q Consensus 346 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 409 (806)
..++.=|...|+.++|.+.++++..... ....+...+..++-+.+. .+.+.+++..+...|+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4455555566666666666666542110 112233333344443321 34455555555555544
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.77 E-value=2.9e+02 Score=24.38 Aligned_cols=20 Identities=5% Similarity=-0.119 Sum_probs=9.3
Q ss_pred HcCCChhHHHHHHHHHHhCC
Q 047492 388 CGDGSTHEAYEVLKNSIDHG 407 (806)
Q Consensus 388 ~~~g~~~~a~~~~~~m~~~~ 407 (806)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444444
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.48 E-value=1.7e+02 Score=28.59 Aligned_cols=53 Identities=9% Similarity=-0.061 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHHcCCCCChhhHH--HHHhhhhccCCHHHHHHHHH
Q 047492 747 TYNILLRRLSVSEIDHACELFNRMRRKGYEPDQWTFD--ILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 747 ~~~~li~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~eA~~~l~ 803 (806)
.++.|..++..|..+ +.+.+.+.|..++..... +-+..-++.|+.+-+.-+++
T Consensus 211 g~t~L~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 211 GNSHLHWAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp CCCTTHHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHH
T ss_pred CCcHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHH
Confidence 344444444336654 344445566655433211 12223344566655555544
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.35 E-value=1.8e+02 Score=24.66 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=28.9
Q ss_pred hcHHHHHHHHHHHHHcCCCC----------------Ch-hhHHHHHhhhhccCCHHHHHHHHH
Q 047492 758 SEIDHACELFNRMRRKGYEP----------------DQ-WTFDILKCGLYNCLRTDEAERRLE 803 (806)
Q Consensus 758 g~~~~A~~~~~~m~~~g~~p----------------~~-~~~~~l~~~~~~~g~~~eA~~~l~ 803 (806)
.++.+|+..++.+....+.- |. .-++-+...|.+.|+.+||...+.
T Consensus 76 KdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 76 KDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp TCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 66666666666666443331 22 234556666778888898888765
No 326
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.20 E-value=6.2e+02 Score=26.99 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHhHhccCCcchhHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 047492 111 LTPLMVDFLENYKKDRYYHQVRFNDTLVMGYALAGKPDIALHLFGKMRFQGMDLDDYAYHVLLNALVEQGCFDAVAVVSK 190 (806)
Q Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (806)
.+.++..+++.... .+.....-+.-+..+.+.+++...+..|.. . ..+...-.....+....|+..+|....+
T Consensus 54 ~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~ 126 (618)
T 1qsa_A 54 PAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (618)
T ss_dssp CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 45555566555443 233444455666777778887776664443 1 2244444456667778888878888888
Q ss_pred HHHhcCCCCccchHHHHHHhhccCCH
Q 047492 191 QISMRGFENDVTRTIMLKCLCKQKKI 216 (806)
Q Consensus 191 ~~~~~~~~~~~~~~~li~~~~~~g~~ 216 (806)
.+-..+...+..+..++..+.+.|.+
T Consensus 127 ~lW~~~~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 127 ELWLTGKSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHSCSSCCCTHHHHHHHHHHHTTCS
T ss_pred HHHhCCCCCcHHHHHHHHHHHHCCCC
Confidence 87777766677777777777766644
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.12 E-value=1.2e+02 Score=24.54 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=18.8
Q ss_pred chHHHHHHhhccC-CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 047492 202 TRTIMLKCLCKQK-KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCK 247 (806)
Q Consensus 202 ~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (806)
.-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3334444444333 344455555555544433333333333333333
No 328
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=25.75 E-value=3e+02 Score=23.14 Aligned_cols=66 Identities=8% Similarity=-0.033 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHHhC-CChhHHHHHHHHhHhcc-CCcchhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 047492 93 HHTRATFHAIFKLLHCA-KLTPLMVDFLENYKKDR-YYHQVRFNDTLVMGYALAGKPDIALHLFGKMR 158 (806)
Q Consensus 93 ~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 158 (806)
..+...+..++..++.. .....+..++..+...+ ...+..-+..++.........+....+|..+-
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D 102 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 102 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 44566666666655433 33445556666665432 22344444444444433333344555555553
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.75 E-value=2.4e+02 Score=23.68 Aligned_cols=60 Identities=12% Similarity=-0.044 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCC--ChhhHHHHHH-HH-----HhcCCcchHHHHHHHHHh
Q 047492 134 NDTLVMGYALAGKPDIALHLFGKMRFQGMDL--DDYAYHVLLN-AL-----VEQGCFDAVAVVSKQISM 194 (806)
Q Consensus 134 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 194 (806)
|...+..| ..|++-+|-++|+..-.....+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33334444 3499999999999998764445 4456777777 22 245666666666666544
No 330
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.73 E-value=3.3e+02 Score=23.35 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=7.1
Q ss_pred ChhhHHHHHHHHHHcCC
Q 047492 341 DGVTMNTVLCFFCKAGM 357 (806)
Q Consensus 341 ~~~~~~~ll~~~~~~g~ 357 (806)
+...-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333444444444443
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.59 E-value=1.1e+02 Score=25.18 Aligned_cols=19 Identities=0% Similarity=-0.039 Sum_probs=8.4
Q ss_pred HHHHHHHHHhHhCCCCCCH
Q 047492 217 DEAVEYFQQLVSGRECVSG 235 (806)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~ 235 (806)
-.|.++++.+.+.+...+.
T Consensus 34 ~ta~ei~~~l~~~~~~is~ 52 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINI 52 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCH
T ss_pred CCHHHHHHHHHhhCCCCCH
Confidence 3444445444444433333
No 332
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.76 E-value=1.7e+02 Score=26.59 Aligned_cols=186 Identities=10% Similarity=-0.037 Sum_probs=92.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--cCCChhHHHHHHHHHHhCC---------CCC
Q 047492 613 IVGLCKAMKANLAWGFMREMRHNGMYPSMEC-------YEELIKLLC--STKNYDMVVGVMNHLEGHG---------RQV 674 (806)
Q Consensus 613 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~~~~~~---------~~~ 674 (806)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ ...
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4445577888888888887777666665332 233433332 5688777777776643311 111
Q ss_pred CchhHHHHHHHhhccccHHHHHHHHHhhhhccCcc--------------hhhHHHHHHhhhccccchhhHHHHHHHHH--
Q 047492 675 TSFIGNTLLLHALKTRDLYEAWIRLRGMLINEQSK--------------ISLLGQLIGVFSGCIKVSQDIEGLQKMIE-- 738 (806)
Q Consensus 675 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 738 (806)
......+.+...+..|+.+-...+++.-..-...+ ..-.+.|.. .+..|+ .++.+.+.+
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~-A~~~g~----~~~v~~Ll~~~ 163 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL-AACTNQ----PHIVHYLTENG 163 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHH-HHHTTC----HHHHHHHHHCS
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHH-HHHcCC----HHHHHHHHhcc
Confidence 10112233444556677665555554322111111 111122222 233344 556666777
Q ss_pred -cCCCCC---hhhHHHHHHHHhhhc-----HHHHHHHHHHHHHcCCCC----------ChhhHHHHHhhhhccCCHHHHH
Q 047492 739 -QCFPLD---TYTYNILLRRLSVSE-----IDHACELFNRMRRKGYEP----------DQWTFDILKCGLYNCLRTDEAE 799 (806)
Q Consensus 739 -~~~~~~---~~~~~~li~~~~~g~-----~~~A~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~~~eA~ 799 (806)
.|..++ ..-++.|..++..|+ .+...++++.+.+.|..+ |..-.. -+..-++.|+.+-+.
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCHHHHH
Confidence 565443 344556666664322 233345666666665443 222222 233445678877777
Q ss_pred HHHHh
Q 047492 800 RRLEE 804 (806)
Q Consensus 800 ~~l~~ 804 (806)
-++++
T Consensus 243 ~Ll~~ 247 (260)
T 3jxi_A 243 HIIRR 247 (260)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66653
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.32 E-value=1.4e+02 Score=24.79 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=19.8
Q ss_pred chHHHHHHhhccC-CHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC
Q 047492 202 TRTIMLKCLCKQK-KIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNS 249 (806)
Q Consensus 202 ~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (806)
.-..++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333444443333 34445555555544443333333333333333333
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.71 E-value=91 Score=20.93 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 047492 148 DIALHLFGKMRFQGMDLDDYAYHVLLNAL 176 (806)
Q Consensus 148 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 176 (806)
++|.+.|-+|.+..-.++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554433333444555555555
No 335
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.46 E-value=3.8e+02 Score=23.20 Aligned_cols=80 Identities=19% Similarity=0.071 Sum_probs=34.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 340 PDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKNSIDHGLFPGKKTLSILA 419 (806)
Q Consensus 340 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 419 (806)
+|...-...+.++.+.|+.+.. ..+..+.+ .++..+-...+.++.+.|..+ +...+..+.+. ++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 4444444455555555543322 22222332 244444444455555444432 33333333321 3444444445
Q ss_pred HHHHhcCC
Q 047492 420 DALCRDGK 427 (806)
Q Consensus 420 ~~~~~~g~ 427 (806)
.++.+.+.
T Consensus 165 ~aL~~~~~ 172 (211)
T 3ltm_A 165 DALGEIGG 172 (211)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 55554444
No 336
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.37 E-value=1.2e+02 Score=19.80 Aligned_cols=11 Identities=27% Similarity=0.172 Sum_probs=5.3
Q ss_pred cCCHHHHHHHH
Q 047492 792 CLRTDEAERRL 802 (806)
Q Consensus 792 ~g~~~eA~~~l 802 (806)
.|+.+.|.++|
T Consensus 35 ~Gdv~~Ave~L 45 (54)
T 2dah_A 35 GGDVDAAVEKL 45 (54)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44455554444
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.27 E-value=1.7e+02 Score=24.57 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCC
Q 047492 611 TLIVGLCKAMKANLAWGFMREMRHN--GMYPSMECYEELIKLLCSTKN 656 (806)
Q Consensus 611 ~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~ 656 (806)
.++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4444555555555566666666654 444555544444455555443
No 338
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.22 E-value=3.3e+02 Score=22.40 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=17.6
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 047492 457 LCKANKVEVGYLIHSELSRMNKVASENTYIQLIHGFNKSNR 497 (806)
Q Consensus 457 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 497 (806)
+...+..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 36 l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 36 LYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33333344444444444444443344444444444444443
No 339
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.49 E-value=1.3e+02 Score=20.24 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047492 727 SQDIEGLQKMIEQCFPLDTYTYNILLRRL 755 (806)
Q Consensus 727 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 755 (806)
++|.+.|.+|++...-+...||...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56788888888765555666788877777
No 340
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.43 E-value=3.9e+02 Score=22.90 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=43.4
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047492 305 PEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLCFFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLI 384 (806)
Q Consensus 305 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 384 (806)
++...-...+.++.+.++.+ +...+..+.. .+|...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44445555556666665533 3333333332 245555555566666665533 3333333333 24555555555
Q ss_pred HHHHcCCChhHHHHHHHHHH
Q 047492 385 NSLCGDGSTHEAYEVLKNSI 404 (806)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~m~ 404 (806)
.++.+.|. .++...+..+.
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHH
Confidence 55555544 33444444444
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.37 E-value=2e+02 Score=27.93 Aligned_cols=10 Identities=20% Similarity=0.198 Sum_probs=7.3
Q ss_pred HHHHHHHHhh
Q 047492 748 YNILLRRLSV 757 (806)
Q Consensus 748 ~~~li~~~~~ 757 (806)
|..++..|..
T Consensus 275 ~~pll~~~~~ 284 (339)
T 1ug3_A 275 RAKLLQKYLC 284 (339)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcC
Confidence 6777777776
No 342
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.37 E-value=1.2e+02 Score=20.93 Aligned_cols=11 Identities=27% Similarity=0.045 Sum_probs=5.7
Q ss_pred cCCHHHHHHHH
Q 047492 792 CLRTDEAERRL 802 (806)
Q Consensus 792 ~g~~~eA~~~l 802 (806)
.|+++.|+++|
T Consensus 45 ~Gnve~Ave~L 55 (67)
T 2dna_A 45 DGDTNAAIYKL 55 (67)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35555555554
No 343
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.27 E-value=2.1e+02 Score=21.14 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 047492 213 QKKIDEAVEYFQQLVSGRECVSGFMIGIVVDALCKNSRFE 252 (806)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (806)
....++|.++++.+..+|. ..|..++.++.+.|...
T Consensus 49 ~t~~~kar~Lld~l~~kG~----~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDN----DSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCH----HHHHHHHHHHHHcCHHH
Confidence 4556667777777766554 56666666666655433
No 344
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.86 E-value=2.7e+02 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 047492 361 AIELYKSRSEFGLSPNGIVYNYLINSLCG 389 (806)
Q Consensus 361 a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 389 (806)
|.++.++....|+.|+..+...++..|..
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 345
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.77 E-value=1.4e+02 Score=19.97 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=15.6
Q ss_pred HHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHH
Q 047492 767 FNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 767 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
++++.+.|+........+|.. -.|+.+.|.++|
T Consensus 21 i~~L~~MGF~d~~~~~~AL~~---~~gnve~Ave~L 53 (58)
T 1wr1_B 21 LRQLNDMGFFDFDRNVAALRR---SGGSVQGALDSL 53 (58)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH---HTSCHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHH---hCCCHHHHHHHH
Confidence 344555565333222333322 256666666665
No 346
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.46 E-value=9.5e+02 Score=27.09 Aligned_cols=165 Identities=8% Similarity=-0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhc-CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047492 275 DVWLRNLVRAGR---LDLALEFLKSKNSL-EGYVPEVFRFNFLVSRLLKENRLMEVFDLFMDMKEGQISPDGVTMNTVLC 350 (806)
Q Consensus 275 ~~li~~~~~~g~---~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 350 (806)
..++...|..|. .+.|.+.|+..... .+.......-..+...-.+.|..++-..+++..... .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH---HHhCCCCCCHHHHHHHHHHHHhcCC
Q 047492 351 FFCKAGMVDVAIELYKSRSEFGLSPNGIVYNYLINSLCGDGSTHEAYEVLKN---SIDHGLFPGKKTLSILADALCRDGK 427 (806)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---m~~~~~~p~~~~~~~ll~~~~~~g~ 427 (806)
+++...+.+...++++................+..........+.|++.+.+ ............+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred hhHHHHHHHHHHHCC
Q 047492 428 FEQMKDLVIFALERN 442 (806)
Q Consensus 428 ~~~a~~~~~~~~~~~ 442 (806)
.++-.+-++...+..
T Consensus 847 t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 847 SEFELQQLEQFKKNN 861 (909)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhhC
No 347
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.46 E-value=4.4e+02 Score=23.33 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhCCCCCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHcCCH
Q 047492 216 IDEAVEYFQQLVSGRECVSGF-------MIGIVVDALCKNSRFEQAGKLLEDFKDRDDVVKLEKAYDVWLRNLVRAGRL 287 (806)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (806)
++.|..+|+.+.+.-..++.. .--..+-.|.+.|.+++|.++|++.. +..++..-...-+....+..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~---~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM---SKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh---cCCCCchHHHHHHHHHHhccCc
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.43 E-value=99 Score=25.27 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 047492 610 NTLIVGLCKAMKANLAWGFMREMRHNGMYPSMECYEELIKLLCSTKNY 657 (806)
Q Consensus 610 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 657 (806)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555555556667888888887776666766655555666665543
No 349
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.43 E-value=2.4e+02 Score=20.05 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047492 429 EQMKDLVIFALERNIKLRDVTYDKFISALCKA 460 (806)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 460 (806)
-.+.++++.+.+.+...+..|....+..+.+.
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33444444444433333333333333333333
No 350
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=20.42 E-value=1.8e+02 Score=18.75 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=16.5
Q ss_pred HHHHHHcCCCCChhhHHHHHhhhhccCCHHHHHHHH
Q 047492 767 FNRMRRKGYEPDQWTFDILKCGLYNCLRTDEAERRL 802 (806)
Q Consensus 767 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~l 802 (806)
++++.+.|+.+......+|.. -.|+.+.|.+++
T Consensus 16 l~~L~~MGF~~~~~~~~AL~~---t~gn~e~A~e~L 48 (52)
T 2jy5_A 16 LEQLSAMGFLNREANLQALIA---TGGDINAAIERL 48 (52)
T ss_dssp HHHHHHTTCCCHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH---hCCCHHHHHHHH
Confidence 455556666433333332221 245677777665
No 351
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.33 E-value=1.4e+02 Score=25.36 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=45.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCcHHHHHHHHHhHhhCCCCChhhHHHHHHhhhcCCChHH
Q 047492 491 GFNKSNRADIAARLLVEMEENGHKPTRALHRAVIRCLCNMETPAKQFLQLLNMQLSHQETNFQIYNFFIDGAGHVKRPDL 570 (806)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
+|-+..++..|+..++.+.+..+..|+..=.. +.. + .-........|+.+...+...|+.++
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~-~~~----------------f-fvd~~DkEfFy~l~a~lltq~g~r~E 132 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDAR-IQE----------------M-FVDPGDEEFFESLLGDLCTLSGYREE 132 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH-HHT----------------T-SCCTTCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccc-cce----------------e-eeccchHHHHHHHHHHHHHHhcCHHH
Confidence 56678899999999999987655533221000 000 0 01111223457888888999999999
Q ss_pred HHHHHHHHH
Q 047492 571 ARAVYELMQ 579 (806)
Q Consensus 571 a~~~~~~m~ 579 (806)
|+..|..--
T Consensus 133 aI~y~~~Sf 141 (242)
T 3kae_A 133 GIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHH
T ss_pred hhhHhhhhc
Confidence 999887655
No 352
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.21 E-value=1.5e+02 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=12.4
Q ss_pred chHHHHHHhhccCCHHHHHHHHHHhHhC
Q 047492 202 TRTIMLKCLCKQKKIDEAVEYFQQLVSG 229 (806)
Q Consensus 202 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 229 (806)
.-..++..+...+..-.|.++++.+.+.
T Consensus 34 qR~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 34 QREVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3334444444444444444555444443
No 353
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.17 E-value=3.3e+02 Score=22.25 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=5.6
Q ss_pred HHcCCHHHHHHHH
Q 047492 282 VRAGRLDLALEFL 294 (806)
Q Consensus 282 ~~~g~~~~a~~~~ 294 (806)
++.|+.+....++
T Consensus 16 ~~~g~~~~v~~ll 28 (165)
T 3twr_A 16 AKAGDVETVKKLC 28 (165)
T ss_dssp HHHTCHHHHHHHC
T ss_pred HHhCCHHHHHHHH
Confidence 3444444444433
Done!