Query 047493
Match_columns 77
No_of_seqs 101 out of 262
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 99.0 1.1E-10 3.8E-15 85.8 2.8 56 21-76 6-64 (357)
2 2o66_A PII protein; regulation 46.0 21 0.00072 23.3 3.4 34 20-53 4-37 (135)
3 2ns1_B Nitrogen regulatory pro 43.7 19 0.00066 22.4 2.8 28 26-53 2-29 (116)
4 3bzq_A Nitrogen regulatory pro 41.2 23 0.0008 21.7 2.9 27 27-53 1-27 (114)
5 3ce8_A Putative PII-like nitro 39.4 30 0.001 22.5 3.3 29 25-53 19-48 (120)
6 1dw9_A Cyanate lyase; cyanate 33.5 6.7 0.00023 27.0 -0.6 46 4-49 16-66 (156)
7 2eg2_A Nitrogen regulatory pro 32.9 39 0.0013 20.7 3.0 25 29-53 1-25 (112)
8 1vfj_A Nitrogen regulatory pro 31.3 42 0.0014 20.6 3.0 25 29-53 1-25 (116)
9 1hwu_A PII protein; herbaspiri 31.2 43 0.0015 20.4 3.0 25 29-53 1-25 (112)
10 2gw8_A PII signal transduction 30.6 41 0.0014 20.7 2.8 26 28-53 2-27 (114)
11 3t9z_A GLNK3, nitrogen regulat 30.5 43 0.0015 21.3 3.0 25 29-53 1-25 (118)
12 3ncq_A Nitrogen regulatory pro 29.9 45 0.0015 21.2 3.0 25 29-53 1-25 (119)
13 4aff_A Nitrogen regulatory pro 27.7 52 0.0018 20.7 3.0 25 29-53 1-25 (116)
14 2j9c_A GLNK1, hypothetical nit 27.3 49 0.0017 20.6 2.7 25 29-53 3-27 (119)
15 3mhy_A PII-like protein PZ; PI 27.2 48 0.0016 20.6 2.7 25 29-53 1-25 (112)
16 1qqg_A IRS-1, insulin receptor 25.0 28 0.00096 24.6 1.4 44 33-77 162-211 (264)
17 3l7p_A Putative nitrogen regul 24.6 59 0.002 20.4 2.8 25 29-53 3-27 (115)
18 3ff4_A Uncharacterized protein 22.1 21 0.00071 22.7 0.2 33 29-62 59-91 (122)
19 2cz4_A Hypothetical protein TT 21.3 69 0.0024 20.3 2.6 28 26-53 22-49 (119)
20 3dfe_A Putative PII-like signa 20.5 68 0.0023 20.1 2.4 27 27-53 4-30 (111)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.01 E-value=1.1e-10 Score=85.77 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=43.6
Q ss_pred CCcccccccceEEEEeecccHHHHHHHhhcccceeeeeCCCCCCccc--hhhh-hhhhc
Q 047493 21 PNDGSSAVGADAQLIIPIESAHCTISYLGGLGLFQFKDLNAGKSLFQ--RTFA-AQVRF 76 (77)
Q Consensus 21 ~~~~RSE~M~l~qL~ip~E~A~~~V~eLG~lglvqF~DLN~~v~~Fq--R~Fv-neIrR 76 (77)
+-|+|.|+|+.++|++|.+.+++++++|+++|+|||.|+|++++.|+ ++|. +++++
T Consensus 6 ~~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~ 64 (357)
T 3rrk_A 6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKR 64 (357)
T ss_dssp --------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHH
T ss_pred CCCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhH
Confidence 45899999999999999999999999999999999999999999998 7765 44554
No 2
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=46.00 E-value=21 Score=23.29 Aligned_cols=34 Identities=12% Similarity=-0.064 Sum_probs=29.9
Q ss_pred CCCcccccccceEEEEeecccHHHHHHHhhcccc
Q 047493 20 LPNDGSSAVGADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 20 ~~~~~RSE~M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
.|..|=+.+|.++..+|+++.+-++.+.|-+.|.
T Consensus 4 ~~~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~ 37 (135)
T 2o66_A 4 SSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGI 37 (135)
T ss_dssp CCSCSSCCSEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcCcCCCCCeEEEEEEECHHHHHHHHHHHHHCCC
Confidence 3567788999999999999999999999988874
No 3
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=43.65 E-value=19 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.9
Q ss_pred ccccceEEEEeecccHHHHHHHhhcccc
Q 047493 26 SAVGADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 26 SE~M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
+..|.+...|++++.+-++.+.|-+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 3569999999999999999999998874
No 4
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=41.23 E-value=23 Score=21.75 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=24.0
Q ss_pred cccceEEEEeecccHHHHHHHhhcccc
Q 047493 27 AVGADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 27 E~M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
+.|.+...|++++.+-++.+.|-+.|.
T Consensus 1 ~~Mk~I~aIIr~~~~~~v~~aL~~~G~ 27 (114)
T 3bzq_A 1 GHMKLITAIVKPFTLDDVKTSLEDAGV 27 (114)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 359999999999999999999988874
No 5
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=39.38 E-value=30 Score=22.51 Aligned_cols=29 Identities=17% Similarity=-0.033 Sum_probs=25.6
Q ss_pred cccccceEEEEeecccHHHHHHHhhcc-cc
Q 047493 25 SSAVGADAQLIIPIESAHCTISYLGGL-GL 53 (77)
Q Consensus 25 RSE~M~l~qL~ip~E~A~~~V~eLG~l-gl 53 (77)
-|.++.+..++|+++.--++.+.|.+. |.
T Consensus 19 ~~~~~~lI~aIIrP~kld~V~daL~~~~gi 48 (120)
T 3ce8_A 19 GMSTEQLLVLIAQNDIKDDIVDTLIELEFL 48 (120)
T ss_dssp -CCSEEEEEEEEEGGGHHHHHHHHTTCTTC
T ss_pred CCccceEEEEEeCHHHHHHHHHHHHhCCCC
Confidence 577888999999999999999999998 65
No 6
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=33.54 E-value=6.7 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHHHhhhhcCcccc-CCCcccccccc----eEEEEeecccHHHHHHHhh
Q 047493 4 TELFNQKRKKNGRWWL-LPNDGSSAVGA----DAQLIIPIESAHCTISYLG 49 (77)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~RSE~M~----l~qL~ip~E~A~~~V~eLG 49 (77)
..|+..|++|+.+|-+ +-.+.+|+.+. +.|--.|.|.|.-..+.||
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~Lg 66 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLD 66 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 3577889999999977 67788998874 7888899998888887775
No 7
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=32.92 E-value=39 Score=20.70 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=22.4
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.+...|++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 2eg2_A 1 MKKIEAIIKPFKLDEVKDALVEIGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7788999999999999999988874
No 8
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=31.33 E-value=42 Score=20.64 Aligned_cols=25 Identities=12% Similarity=-0.114 Sum_probs=22.5
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.+...|++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~V~~aL~~~G~ 25 (116)
T 1vfj_A 1 MKLIVAIVRPEKLNEVLKALFQAEV 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCC
Confidence 7788999999999999999988874
No 9
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=31.21 E-value=43 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=22.5
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.+...|++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 1hwu_A 1 MKQVTAIIKPFKLDEVRESLAEVGV 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7788999999999999999998874
No 10
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=30.64 E-value=41 Score=20.68 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=23.4
Q ss_pred ccceEEEEeecccHHHHHHHhhcccc
Q 047493 28 VGADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 28 ~M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
.|.+...|++++.+-++.+.|-+.|.
T Consensus 2 ~Mk~I~aII~~~~~~~v~~aL~~~G~ 27 (114)
T 2gw8_A 2 PMKKIEAIVKPFKLDDVREALTEIGI 27 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 48999999999999999999988874
No 11
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=30.52 E-value=43 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.7
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|..+..||+++.+-++.++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~ 25 (118)
T 3t9z_A 1 MKMVVAVIRPEKLECVKKALEERGF 25 (118)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999999874
No 12
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=29.94 E-value=45 Score=21.23 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=22.7
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|..+..||+++.+-++.++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~ 25 (119)
T 3ncq_A 1 MKKIEAIVRAEKFPEVKAALEERGF 25 (119)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999998874
No 13
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=27.68 E-value=52 Score=20.72 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=22.6
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.....||+++..-++.++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~vk~AL~~~G~ 25 (116)
T 4aff_A 1 MKKIEAIIRPFKLDEVKIALVNAGI 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999998874
No 14
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=27.27 E-value=49 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=23.0
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.+...|++++.+-++.+.|-+.|.
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~G~ 27 (119)
T 2j9c_A 3 MKKVEAIIRPEKLEIVKKALSDAGY 27 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCC
Confidence 8899999999999999999998874
No 15
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=27.16 E-value=48 Score=20.57 Aligned_cols=25 Identities=20% Similarity=-0.004 Sum_probs=22.2
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.....|||++..-++.++|-+.|.
T Consensus 1 MK~I~aIIr~~kl~~vk~AL~~~G~ 25 (112)
T 3mhy_A 1 MKLVMAIIKPFKLDEVREALTSLGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999988874
No 16
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=25.00 E-value=28 Score=24.64 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=29.5
Q ss_pred EEEeecccHHHHHHHhhcc------cceeeeeCCCCCCccchhhhhhhhcC
Q 047493 33 QLIIPIESAHCTISYLGGL------GLFQFKDLNAGKSLFQRTFAAQVRFM 77 (77)
Q Consensus 33 qL~ip~E~A~~~V~eLG~l------glvqF~DLN~~v~~FqR~FvneIrRc 77 (77)
++.|.+..|-+.-+..|.- ..++++++|+++..+.-+| ..||||
T Consensus 162 ~V~v~~~~~~~~~~L~G~y~l~l~~~~l~L~~~~~~~~~~~wpl-~~lRr~ 211 (264)
T 1qqg_A 162 QVILKPKGLGQTKNLIGIYRLCLTSKTISFVKLNSEAAAVVLQL-MNIRRC 211 (264)
T ss_dssp EEEEEEEEHHHHTTCCEEEEEEECSSEEEEEETTCSSCSEEEEG-GGEEEE
T ss_pred EEEEEecccccccCCCCceEEEEeCcEEEEEecCCCcceEEeeh-hheecc
Confidence 4555444444444443432 2589999999999998887 578886
No 17
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=24.62 E-value=59 Score=20.42 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=23.1
Q ss_pred cceEEEEeecccHHHHHHHhhcccc
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
|.....||+++..-++.++|.+.|.
T Consensus 3 MKkI~AIIrp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 3 MKKIEAIIRSDKLEDLKAALVQSGF 27 (115)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCC
Confidence 8899999999999999999998886
No 18
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=22.15 E-value=21 Score=22.69 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.6
Q ss_pred cceEEEEeecccHHHHHHHhhcccceeeeeCCCC
Q 047493 29 GADAQLIIPIESAHCTISYLGGLGLFQFKDLNAG 62 (77)
Q Consensus 29 M~l~qL~ip~E~A~~~V~eLG~lglvqF~DLN~~ 62 (77)
..++-+++|.+..-+++.+++++|.=-+. ++++
T Consensus 59 vDlavi~~p~~~v~~~v~e~~~~g~k~v~-~~~G 91 (122)
T 3ff4_A 59 VDTVTLYINPQNQLSEYNYILSLKPKRVI-FNPG 91 (122)
T ss_dssp CCEEEECSCHHHHGGGHHHHHHHCCSEEE-ECTT
T ss_pred CCEEEEEeCHHHHHHHHHHHHhcCCCEEE-ECCC
Confidence 67999999999999999999999853332 5554
No 19
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=21.30 E-value=69 Score=20.31 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=24.3
Q ss_pred ccccceEEEEeecccHHHHHHHhhcccc
Q 047493 26 SAVGADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 26 SE~M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
..+|.++.+||.++..-++++.|-+.|+
T Consensus 22 ~~~mK~I~aIIr~~k~e~V~~aL~~~Gi 49 (119)
T 2cz4_A 22 LVPLKLVTIVAESLLEKRLVEEVKRLGA 49 (119)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred cCCcEEEEEEECHHHHHHHHHHHHhCCC
Confidence 4579999999999999999988888875
No 20
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=20.50 E-value=68 Score=20.15 Aligned_cols=27 Identities=4% Similarity=-0.060 Sum_probs=23.0
Q ss_pred cccceEEEEeecccHHHHHHHhhcccc
Q 047493 27 AVGADAQLIIPIESAHCTISYLGGLGL 53 (77)
Q Consensus 27 E~M~l~qL~ip~E~A~~~V~eLG~lgl 53 (77)
.+|.++..++.++..-++.+.|-+.|.
T Consensus 4 ~~mKkIeaIi~p~kl~~V~~aL~~~Gv 30 (111)
T 3dfe_A 4 KRANKLVIVTEKVLLKKVAKIIEEAGA 30 (111)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred CceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 579999999999999888888877763
Done!