BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047496
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L ++L +N L G IP + +L L L L +N L G + + + TL+ +IL N L
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 62 GSLPSRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
G +PS GLS T + ++L NR +G IP I L +LKL N+FSG IP +G+
Sbjct: 480 GEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 121 RNLEWLGLAYN 131
R+L WL L N
Sbjct: 538 RSLIWLDLNTN 548
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L+ +YL N G+IP ++N L +L L N L G + + + ++S L+ + L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
G +P + + + T+E L L+ N +G IPS ++N + L + L N +G IP IG L
Sbjct: 456 GEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 122 NLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSI 170
NL L L+ N+ +C+ L L+L N +G +P+++
Sbjct: 515 NLAILKLSNNS-----FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 2 LKGIYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
L+ + L NK GEIP ++ L L L N+ G V + S L+ + L +N+
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 61 FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITN-ASKLTLLKLGGNTFSG-LIPDTIG 118
G LP L + ++ L+L N FSG +P S+TN ++ L L L N FSG ++P+
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 119 NLRN-LEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
N +N L+ L L N +NC +L SL+L N L G +PSS+G+LS
Sbjct: 391 NPKNTLQELYLQNNG-----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 178 ETLLITNCSISGNIPQAI 195
+ L N + G IPQ +
Sbjct: 446 DLKLWLNM-LEGEIPQEL 462
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 10 NKLHGEIPHE-IANLRNLEALALGMNNLVGVVSAPIFNMS-TLKIIILINNSLFGS-LPS 66
N GE+P + + +R L+ L L N G + + N+S +L + L +N+ G LP+
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 67 RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE-- 124
T++ L L+ N F+G IP +++N S+L L L N SG IP ++G+L L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 125 --WLGLAYNNXXXXXXXXXXXXX---------------XANCKKLRSLNLIGNPLDGFLP 167
WL + +NC L ++L N L G +P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 168 SSIGNLSMSLETLLITNCSISGNIPQAI 195
IG L +L L ++N S SGNIP +
Sbjct: 508 KWIGRLE-NLAILKLSNNSFSGNIPAEL 534
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 25/214 (11%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L+ + L +N L GEIP ++N NL ++L N L G + I + L I+ L NNS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNAS-KLTLLKLGGNTF-----SGLIPD 115
G++P+ +G ++ L+L N F+GTIP+++ S K+ + G + G+ +
Sbjct: 528 GNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 116 TIGNLRNLEWLGLAYN-----------NXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDG 164
G LE+ G+ N N + L++ N L G
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 165 FLPSSIGNLSMSLETLLITNC---SISGNIPQAI 195
++P IG S+ L I N ISG+IP +
Sbjct: 647 YIPKEIG----SMPYLFILNLGHNDISGSIPDEV 676
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 8/197 (4%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L+ + + NKL G+ I+ L+ L + N VG + P + +L+ + L N
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFT 282
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNL 120
G +P + + T+ L+L N F G +P + S L L L N FSG +P DT+ +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 121 RNLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDG-FLPSSIGNLSMSLET 179
R L+ L L++N + L +L+L N G LP+ N +L+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSAS----LLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 180 LLITNCSISGNIPQAIS 196
L + N +G IP +S
Sbjct: 399 LYLQNNGFTGKIPPTLS 415
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 75/234 (32%)
Query: 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMS--------TLKIIILI 56
+ L N G IP E+ + R+L L L N G + A +F S K + I
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 57 NNS-----LFGS------------------------LPSRI--GLSLPTVEH------LN 79
N G+ + SR+ G + PT ++ L+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNXXXXXXX 139
+ N SG IP I + L +L LG N SG IPD +G+LR L L L+ N
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK------- 691
Query: 140 XXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQ 193
LDG +P ++ L+M L + ++N ++SG IP+
Sbjct: 692 ----------------------LDGRIPQAMSALTM-LTEIDLSNNNLSGPIPE 722
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 36 LVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSIT 94
+ G ++P F N ++ + + N L G +P IG S+P + LNL N SG+IP +
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVG 677
Query: 95 NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRS 154
+ L +L L N G IP + L L + L+ NN K L +
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
Query: 155 LNLIGNPLDGFLPS 168
L G PL PS
Sbjct: 738 PGLCGYPLPRCDPS 751
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 77/242 (31%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L I L N+L GEIP I L NL L L N+ G + A + + +L I + +N +LF
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLF 550
Query: 62 -GSLPSRI-----------------------GLSLPTVEHLNL---------ELNRFSGT 88
G++P+ + G+ NL +LNR S
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 89 IPSSIT-------------NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNXXX 135
P +IT N + L + N SG IP IG++ L L L +N+
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND--- 667
Query: 136 XXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
+ G +P +G+L L L +++ + G IPQA+
Sbjct: 668 --------------------------ISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAM 700
Query: 196 ST 197
S
Sbjct: 701 SA 702
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L ++L +N L G IP + +L L L L +N L G + + + TL+ +IL N L
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 62 GSLPSRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
G +PS GLS T + ++L NR +G IP I L +LKL N+FSG IP +G+
Sbjct: 477 GEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 121 RNLEWLGLAYN 131
R+L WL L N
Sbjct: 535 RSLIWLDLNTN 545
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L+ +YL N G+IP ++N L +L L N L G + + + ++S L+ + L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
G +P + + + T+E L L+ N +G IPS ++N + L + L N +G IP IG L
Sbjct: 453 GEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 122 NLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSI 170
NL L L+ N+ +C+ L L+L N +G +P+++
Sbjct: 512 NLAILKLSNNS-----FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 2 LKGIYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
L+ + L NK GEIP ++ L L L N+ G V + S L+ + L +N+
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 61 FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITN-ASKLTLLKLGGNTFSG-LIPDTIG 118
G LP L + ++ L+L N FSG +P S+TN ++ L L L N FSG ++P+
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 119 NLRN-LEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
N +N L+ L L N +NC +L SL+L N L G +PSS+G+LS
Sbjct: 388 NPKNTLQELYLQNNG-----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 178 ETLLITNCSISGNIPQAI 195
+ L N + G IPQ +
Sbjct: 443 DLKLWLNM-LEGEIPQEL 459
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 10 NKLHGEIPHE-IANLRNLEALALGMNNLVGVVSAPIFNMS-TLKIIILINNSLFGS-LPS 66
N GE+P + + +R L+ L L N G + + N+S +L + L +N+ G LP+
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 67 RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE-- 124
T++ L L+ N F+G IP +++N S+L L L N SG IP ++G+L L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 125 --WLGLAYNNXXXXXXXXXXXXX---------------XANCKKLRSLNLIGNPLDGFLP 167
WL + +NC L ++L N L G +P
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 168 SSIGNLSMSLETLLITNCSISGNIPQAI 195
IG L +L L ++N S SGNIP +
Sbjct: 505 KWIGRLE-NLAILKLSNNSFSGNIPAEL 531
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 19/211 (9%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L+ + L +N L GEIP ++N NL ++L N L G + I + L I+ L NNS
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNAS-KLTLLKLGGNTF-----SGLIPD 115
G++P+ +G ++ L+L N F+GTIP+++ S K+ + G + G+ +
Sbjct: 525 GNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 116 TIGNLRNLEWLGLAYN-----------NXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDG 164
G LE+ G+ N N + L++ N L G
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 165 FLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
++P IG++ L L + + ISG+IP +
Sbjct: 644 YIPKEIGSMPY-LFILNLGHNDISGSIPDEV 673
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 8/197 (4%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L+ + + NKL G+ I+ L+ L + N VG + P + +L+ + L N
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFT 279
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNL 120
G +P + + T+ L+L N F G +P + S L L L N FSG +P DT+ +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 121 RNLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDG-FLPSSIGNLSMSLET 179
R L+ L L++N + L +L+L N G LP+ N +L+
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSAS----LLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 180 LLITNCSISGNIPQAIS 196
L + N +G IP +S
Sbjct: 396 LYLQNNGFTGKIPPTLS 412
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 75/234 (32%)
Query: 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMS--------TLKIIILI 56
+ L N G IP E+ + R+L L L N G + A +F S K + I
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 57 NNS-----LFGS------------------------LPSRI--GLSLPTVEH------LN 79
N G+ + SR+ G + PT ++ L+
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNXXXXXXX 139
+ N SG IP I + L +L LG N SG IPD +G+LR L L L+ N
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK------- 688
Query: 140 XXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQ 193
LDG +P ++ L+M L + ++N ++SG IP+
Sbjct: 689 ----------------------LDGRIPQAMSALTM-LTEIDLSNNNLSGPIPE 719
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 36 LVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSIT 94
+ G ++P F N ++ + + N L G +P IG S+P + LNL N SG+IP +
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVG 674
Query: 95 NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRS 154
+ L +L L N G IP + L L + L+ NN K L +
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
Query: 155 LNLIGNPLDGFLPS 168
L G PL PS
Sbjct: 735 PGLCGYPLPRCDPS 748
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 77/242 (31%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L I L N+L GEIP I L NL L L N+ G + A + + +L I + +N +LF
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLF 547
Query: 62 -GSLPSRI-----------------------GLSLPTVEHLNL---------ELNRFSGT 88
G++P+ + G+ NL +LNR S
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 89 IPSSIT-------------NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNXXX 135
P +IT N + L + N SG IP IG++ L L L +N+
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND--- 664
Query: 136 XXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
+ G +P +G+L L L +++ + G IPQA+
Sbjct: 665 --------------------------ISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAM 697
Query: 196 ST 197
S
Sbjct: 698 SA 699
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 8 GYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR 67
G N L G IP IA L L L + N+ G + + + TL + N+L G+LP
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 68 IGLSLPTVEHLNLELNRFSGTIPSSITNASKL-TLLKLGGNTFSGLIPDTIGNLRNLEWL 126
I SLP + + + NR SG IP S + SKL T + + N +G IP T NL NL ++
Sbjct: 145 IS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202
Query: 127 GLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186
L+ N + K + ++L N L F +G LS +L L + N
Sbjct: 203 DLSRN-----MLEGDASVLFGSDKNTQKIHLAKNSL-AFDLGKVG-LSKNLNGLDLRNNR 255
Query: 187 ISGNIPQAIS 196
I G +PQ ++
Sbjct: 256 IYGTLPQGLT 265
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
+ + + N+L G+IP ANL NL + L N L G S + + I L NSL
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 61 FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
L ++GLS + L+L NR GT+P +T L L + N G IP GNL
Sbjct: 234 AFDL-GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Query: 121 RNLEWLGLAYN 131
+ + A N
Sbjct: 291 QRFDVSAYANN 301
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.036, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 30 ALGMNNL-VGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGT 88
AL ++NL + +SA IF L + L NSL LP+ I +L + L+L NR + +
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIK-NLSNLRVLDLSHNRLT-S 284
Query: 89 IPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN 131
+P+ + + +L N + L P GNL NL++LG+ N
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGN 326
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
++ + LG NKLH + L NL L L N L + + ++ LK ++L+ N L
Sbjct: 65 VRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL- 121
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
SLP + L + +LNL N+ + LT L L N L L
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 122 NLEWLGLAYNN 132
L+ L L N
Sbjct: 182 QLKDLRLYQNQ 192
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 32/154 (20%)
Query: 5 IYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLV--GVVSAPIFNMSTLKIIILINNSLF 61
+ L NKL +PH + + L L L+L N L G S F ++LK + L N +
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 62 GSLPSRIGLSLPTVEHLNLE------LNRFSG----------TIPSSITNA--------- 96
+ +GL +EHL+ + ++ FS I + T
Sbjct: 92 TMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 97 SKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLA 129
S L +LK+ GN+F +PD LRNL +L L+
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
L + L N+L P +L L L+LG N L + +++LK + L NN L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL- 169
Query: 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFS 110
+P L ++ L L+ N+ + + KL +L+L N +
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFG 62
K + L NKL L L L L N L + + + L+ + + +N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-Q 98
Query: 63 SLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN 122
+LP + L + L L+ N+ P + +KLT L LG N L L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 123 LEWLGLAYNN 132
L+ L L YNN
Sbjct: 159 LKELRL-YNN 167
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL-VGVVSAPIFNMSTLKIIILINNSL 60
L+ + L YN+ LE L L L V +P N+ LK++ L ++SL
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL-SHSL 436
Query: 61 FGSLPSRIGLSLPTVEHLNLELNRF-SGTIPS--SITNASKLTLLKLGGNTFSGLIPDTI 117
++ LP ++HLNL+ N F G I S+ +L +L L S +
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 118 GNLRNLEWLGLAYN 131
+L+ + + L++N
Sbjct: 497 TSLKMMNHVDLSHN 510
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL-FGSLPSRIGLSLPTVEHL 78
+ N + LE+L LG N++ + F LK++ NN++ + S L T L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184
Query: 79 NLELNRFSGTIPSSITNASKLTLLKLGGNT-----FSGLIPDTIGNLRNLEWLG 127
NL N +G P + +A L GG F GL TI +L WLG
Sbjct: 185 NLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSL----WLG 233
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS-RIGLSLPTVEHLNLELNR 84
+E++ L + + S S L+ + L L LPS +GLS T++ L L N+
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLS--TLKKLVLSANK 312
Query: 85 FSGTIPSSITNASKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNN 132
F S +N LT L + GNT L + NL NL L L++++
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 97 SKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLA 129
S L +LK+ GN+F +PD LRNL +L L+
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 97 SKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLA 129
S L +LK+ GN+F +PD LRNL +L L+
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 66 SRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
+++ LPT + LNL N+ ++ T S+LT L +G NT S L P+ L L+
Sbjct: 22 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 125 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLD 163
L L +N A C L L+L+ N +
Sbjct: 82 VLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQ 115
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 14 GEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSL 72
EIP E+ +L L+ + LG+NNL + ++ N +LK + L N + G +
Sbjct: 554 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 613
Query: 73 PTVEHLNLELNRFSGTIPS 91
+ L++ N F T S
Sbjct: 614 RNLTELDMRFNPFDCTCES 632
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 66 SRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
+++ LPT + LNL N+ ++ T S+LT L +G NT S L P+ L L+
Sbjct: 27 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 125 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLD 163
L L +N A C L L+L+ N +
Sbjct: 87 VLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQ 120
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 14 GEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSL 72
EIP E+ +L L+ + LG+NNL + ++ N +LK + L N + G +
Sbjct: 559 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 618
Query: 73 PTVEHLNLELNRFSGTIPS 91
+ L++ N F T S
Sbjct: 619 RNLTELDMRFNPFDCTCES 637
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL-FGSLPSRIGLSLPTVEHL 78
+ NL NLE+L LG N++ + F LK++ NN++ + S L T L
Sbjct: 124 VHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSL 183
Query: 79 NLELNRFSGTIPSSITNASKLTLLKLGGN-----TFSGLIPDTIGNLRNLEWLG 127
N N G P + + LK GG+ F GL T+ +L WLG
Sbjct: 184 NFNGNDIKGIEPGAFI-SKIFQSLKFGGSLNLFIIFKGLQNSTLQSL----WLG 232
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 190 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 242
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 243 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 300
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 301 SNLKNLTYLTLYFNN 315
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 66 SRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
+++ LPT + LNL N+ ++ T S+LT L +G NT S L P+ L L+
Sbjct: 17 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 125 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLD 163
L L +N A C L L+L+ N +
Sbjct: 77 VLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQ 110
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 14 GEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSL 72
EIP E+ +L L+ + LG+NNL + ++ N +LK + L N + G +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 73 PTVEHLNLELNRFSGTIPS 91
+ L++ N F T S
Sbjct: 609 RNLTELDMRFNPFDCTCES 627
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY 130
SL ++ + +N+ + P + N ++L LK+G N + L P + NL L WL +
Sbjct: 197 SLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252
Query: 131 N 131
N
Sbjct: 253 N 253
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 191 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 243
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 301
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 302 SNLKNLTYLTLYFNN 316
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 190 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 242
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 243 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 300
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 301 SNLKNLTYLTLYFNN 315
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 97 SKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLA 129
S L +LK+ GN+F +PD LRNL +L L+
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 195 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 247
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 305
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 306 SNLKNLTYLTLYFNN 320
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 191 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 243
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 301
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 302 SNLKNLTYLTLYFNN 316
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 191 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 243
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 301
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 302 SNLKNLTYLTLYFNN 316
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL--FGSLPSRIGLSLPTVEH 77
+A L NLE+L + NN + ++ P+ ++ L + L N L G+L S L+
Sbjct: 194 LAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLT-----D 246
Query: 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------------------DTI 117
L+L N+ S P ++ +KLT LKLG N S + P I
Sbjct: 247 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 304
Query: 118 GNLRNLEWLGLAYNN 132
NL+NL +L L +NN
Sbjct: 305 SNLKNLTYLTLYFNN 319
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 12 LHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLS 71
L G +PH L L L N L G+ S ++ + L N + + +++ L
Sbjct: 49 LFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLG 100
Query: 72 LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTF 109
L ++ LNL N+ S +P S + + LT L L N F
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 32/122 (26%)
Query: 54 ILINNSLFGSLPSRIGL--SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSG 111
+L+N++ G + S GL LP + L L+ N+ +G P++ AS + L+LG N
Sbjct: 34 LLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK--- 89
Query: 112 LIPDTIGNLRNLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIG 171
I + N +LGL +L++LNL N + +P S
Sbjct: 90 -----IKEISNKMFLGL---------------------HQLKTLNLYDNQISCVMPGSFE 123
Query: 172 NL 173
+L
Sbjct: 124 HL 125
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 16 IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTV 75
+P E++N ++L + L N + + + NM+ L +IL N L +P R L ++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104
Query: 76 EHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
L+L N S + + S L+ L +G N L D N++WL
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANP---LYCDC-----NMQWL 147
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 46 NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105
+ L ++ +N LP I V L L+ N+F+ +P ++N LTL+ L
Sbjct: 7 ECTCLDTVVRCSNKGLKVLPKGIPRD---VTELYLDGNQFT-LVPKELSNYKHLTLIDLS 62
Query: 106 GNTFSGLIPDTIGNLRNLEWLGLAYNN 132
N S L + N+ L L L+YN
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYNR 89
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 15 EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
E+P LE L L N L + A I +++ L+ + + LP + + +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 75 VEH---LNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
EH +NL+ R T +P+SI N L LK+ + S L P I +L LE L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD 235
Query: 128 L 128
L
Sbjct: 236 L 236
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 15 EIP-HEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLP 73
E+P H +L NLE++ G N L + M LK + L +N L S+P I L
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL-KSVPDGIFDRLT 218
Query: 74 TVEHLNLELNRFSGTIP 90
+++ + L N + + P
Sbjct: 219 SLQKIWLHTNPWDCSCP 235
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNX 133
T + ++ +L++ IPSS N + L N L + N L+WL L+
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKN------IDLSFNPLKILKSYSFSNFSELQWLDLS---- 64
Query: 134 XXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
L +L L GNP+ F P S L+ SLE L+
Sbjct: 65 -RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLV 110
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNX 133
T + ++ +L++ IPSS N + L N L + N L+WL L+
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKN------IDLSFNPLKILKSYSFSNFSELQWLDLS---- 59
Query: 134 XXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
L +L L GNP+ F P S L+ SLE L+
Sbjct: 60 -RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLV 105
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7 LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
L +N+L +P +A LR LE L N L V + N+ L+ ++L NN L S
Sbjct: 470 LSHNRLRA-LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAI 526
Query: 67 RIGLSLPTVEHLNLE 81
+ +S P + LNL+
Sbjct: 527 QPLVSCPRLVLLNLQ 541
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7 LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
L +N+L +P +A LR LE L N L V + N+ L+ ++L NN L S
Sbjct: 470 LSHNRLRA-LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAI 526
Query: 67 RIGLSLPTVEHLNLE 81
+ +S P + LNL+
Sbjct: 527 QPLVSCPRLVLLNLQ 541
>pdb|1G2O|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With A Transition-
State Inhibitor
pdb|1G2O|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With A Transition-
State Inhibitor
pdb|1G2O|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With A Transition-
State Inhibitor
pdb|1I80|A Chain A, Crystal Structure Of M. Tuberculosis Pnp In Complex With
Iminoribitol, 9-Deazahypoxanthine And Phosphate Ion
pdb|1I80|B Chain B, Crystal Structure Of M. Tuberculosis Pnp In Complex With
Iminoribitol, 9-Deazahypoxanthine And Phosphate Ion
pdb|1I80|C Chain C, Crystal Structure Of M. Tuberculosis Pnp In Complex With
Iminoribitol, 9-Deazahypoxanthine And Phosphate Ion
pdb|1N3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Pnp With
Transition State Analog Dadme-Immh
pdb|1N3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Pnp With
Transition State Analog Dadme-Immh
pdb|1N3I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Pnp With
Transition State Analog Dadme-Immh
pdb|3IOM|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With
2'-Deoxyguanosine
pdb|3IOM|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With
2'-Deoxyguanosine
pdb|3SCZ|A Chain A, Combining Crystallographic, Thermodynamic, And Molecular
Dynamics Studies Of Mycobacterium Tuberculosis Purine
Nucleoside Phosphorylase
pdb|3SCZ|B Chain B, Combining Crystallographic, Thermodynamic, And Molecular
Dynamics Studies Of Mycobacterium Tuberculosis Purine
Nucleoside Phosphorylase
Length = 268
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILIN 57
+ +G+Y G H E P EI L+ L A +GM+ + ++A L + ++ N
Sbjct: 175 LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTN 231
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL-------FGSLPSRIGLSL 72
+ NL NLE+L LG N++ + F LK++ NN++ SL I LSL
Sbjct: 122 VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSL 181
>pdb|3LA8|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159
pdb|3LBA|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159 Bound To Hypoxanthine
Length = 303
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILIN 57
+G+Y+G + E P EI + L A A+GM+ + V+ A + L I + N
Sbjct: 213 EGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVHSGLKVLGISAITN 267
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINN 58
LK +++ NKL E+P I L +L LAL N L + +S+L L N
Sbjct: 114 LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSL 64
+YL N++ P +L NL+ L LG N L G + +F+ T ++ + + L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 65 PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
PS + L ++ L + N+ + +P I + LT L L N IP G L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPH--GAFDRLS 159
Query: 125 WLGLAY 130
L AY
Sbjct: 160 SLTHAY 165
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRF 85
+++L L N + + + + L+++IL +S ++ SL ++EHL+L N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLIL-KSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 86 SGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGL 128
S S S L L L GN + L + NL NL+ L +
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGS 63
G+ G ++ IP + +++L L N + + + + L+++IL +S +
Sbjct: 34 GVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLIL-KSSRINT 90
Query: 64 LPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRN 122
+ SL ++EHL+L N S S S L L L GN + L + NL N
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 150
Query: 123 LE 124
L+
Sbjct: 151 LQ 152
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 68 IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
+G +LP + L++ NR + ++ +L L L GN L P + LE L
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 128 LAYNN 132
LA NN
Sbjct: 156 LANNN 160
>pdb|4I9W|E Chain E, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|G Chain G, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 217
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 96 ASKLTLLKLGGNTFSGLIPDTIGNL--RNLEWLGL 128
AS T K+ G +F+G I + + +NLEW+GL
Sbjct: 16 ASMKTSCKVSGYSFTGYIMNWVKQRHGKNLEWIGL 50
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 68 IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
+G +LP + L++ NR + ++ +L L L GN L P + LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 128 LAYNN 132
LA NN
Sbjct: 155 LANNN 159
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 2 LKGIYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
L +YLG NKL +P+ + N L +L L L N L + + ++ LK + L N L
Sbjct: 54 LTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 61 FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
SLP + L ++ L L N+ + L + L N + P +
Sbjct: 113 -QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GI 167
Query: 121 RNL-EWL 126
R L EW+
Sbjct: 168 RYLSEWI 174
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 68 IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
+G +LP + L++ NR + ++ +L L L GN L P + LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 128 LAYNN 132
LA NN
Sbjct: 155 LANNN 159
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 68 IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
+G +LP + L++ NR + ++ +L L L GN L P + LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 128 LAYNN 132
LA NN
Sbjct: 155 LANNN 159
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 68 IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
+G +LP + L++ NR + ++ +L L L GN L P + LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 128 LAYNN 132
LA NN
Sbjct: 155 LANNN 159
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 24/133 (18%)
Query: 1 MLKGIYLGYNKLHGEIP-HEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
L+ + LG N++ ++ E LRN+ + L N + + + S
Sbjct: 406 QLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLST-----------------S 448
Query: 60 LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
F +PS L L V N++++ PS LT+L L N + + D +
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDIS------PSPFRPLRNLTILDLSNNNIANINEDLLEG 502
Query: 120 LRNLEWLGLAYNN 132
L NLE L +NN
Sbjct: 503 LENLEILDFQHNN 515
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,321,516
Number of Sequences: 62578
Number of extensions: 185914
Number of successful extensions: 620
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 191
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)