Query 047496
Match_columns 204
No_of_seqs 154 out of 2065
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 11:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.7E-25 8E-30 187.9 12.8 193 2-201 142-334 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.6E-24 3.5E-29 184.0 12.8 199 1-201 165-382 (968)
3 KOG4194 Membrane glycoprotein 99.8 5.7E-22 1.2E-26 152.4 2.9 191 3-200 152-366 (873)
4 KOG4194 Membrane glycoprotein 99.8 9.6E-22 2.1E-26 151.2 4.0 136 2-138 175-334 (873)
5 KOG0617 Ras suppressor protein 99.8 6.2E-22 1.3E-26 130.8 -5.8 165 22-199 31-196 (264)
6 KOG0444 Cytoskeletal regulator 99.8 9.1E-21 2E-25 147.5 -1.2 188 3-202 106-294 (1255)
7 KOG0617 Ras suppressor protein 99.8 6.2E-21 1.3E-25 126.1 -4.0 182 2-195 35-219 (264)
8 KOG0444 Cytoskeletal regulator 99.8 1.4E-20 2.9E-25 146.5 -3.9 186 5-202 155-342 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.2E-20 4.7E-25 138.0 -8.4 184 4-202 95-300 (565)
10 KOG4237 Extracellular matrix p 99.7 7.3E-19 1.6E-23 129.6 -4.0 192 3-202 70-349 (498)
11 cd00116 LRR_RI Leucine-rich re 99.6 1.5E-17 3.3E-22 125.1 -0.1 142 20-163 77-234 (319)
12 PLN03210 Resistant to P. syrin 99.6 4.7E-15 1E-19 127.8 13.7 185 2-194 613-821 (1153)
13 KOG0472 Leucine-rich repeat pr 99.6 1.3E-18 2.8E-23 128.8 -8.6 185 2-202 70-278 (565)
14 PLN03210 Resistant to P. syrin 99.6 1.1E-14 2.4E-19 125.6 13.8 102 98-201 779-895 (1153)
15 cd00116 LRR_RI Leucine-rich re 99.6 1.3E-16 2.9E-21 120.0 0.9 193 1-196 82-299 (319)
16 PRK15387 E3 ubiquitin-protein 99.6 1.8E-14 3.9E-19 117.8 10.7 87 98-199 383-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 1.9E-14 4.1E-19 117.9 10.3 161 2-188 201-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 7.1E-14 1.5E-18 114.6 9.9 173 2-195 180-365 (754)
19 KOG0532 Leucine-rich repeat (L 99.5 2.7E-16 5.9E-21 121.1 -4.1 178 4-198 79-256 (722)
20 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 112.5 10.8 46 151-202 403-448 (788)
21 KOG0618 Serine/threonine phosp 99.5 3.5E-16 7.6E-21 126.2 -4.5 36 1-37 242-277 (1081)
22 KOG4237 Extracellular matrix p 99.5 5.4E-16 1.2E-20 114.7 -3.9 181 1-188 92-359 (498)
23 KOG0618 Serine/threonine phosp 99.5 5.3E-16 1.2E-20 125.2 -5.1 173 3-187 290-488 (1081)
24 COG4886 Leucine-rich repeat (L 99.4 2.9E-13 6.4E-18 104.9 4.8 178 2-194 118-296 (394)
25 KOG0532 Leucine-rich repeat (L 99.4 6.8E-15 1.5E-19 113.5 -4.3 166 22-203 73-238 (722)
26 KOG3207 Beta-tubulin folding c 99.4 9E-14 2E-18 104.2 -0.2 184 1-189 122-315 (505)
27 PF14580 LRR_9: Leucine-rich r 99.3 1.7E-12 3.7E-17 88.4 5.0 127 46-182 17-147 (175)
28 KOG1909 Ran GTPase-activating 99.2 1.2E-12 2.6E-17 95.7 0.2 193 2-196 32-262 (382)
29 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 84.4 3.5 129 22-158 17-148 (175)
30 PLN03150 hypothetical protein; 99.2 8.7E-11 1.9E-15 95.7 8.5 107 75-186 420-526 (623)
31 PLN03150 hypothetical protein; 99.2 6.4E-11 1.4E-15 96.5 7.4 106 26-132 420-526 (623)
32 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 5.8E-17 96.4 -0.8 189 1-190 147-341 (505)
33 KOG1259 Nischarin, modulator o 99.2 4.4E-12 9.6E-17 91.6 -0.2 129 48-189 284-413 (490)
34 COG4886 Leucine-rich repeat (L 99.1 4.3E-11 9.4E-16 92.8 4.2 167 20-201 112-279 (394)
35 KOG1909 Ran GTPase-activating 99.1 3.5E-12 7.5E-17 93.3 -2.1 183 2-187 94-310 (382)
36 PF13855 LRR_8: Leucine rich r 99.1 1.8E-10 3.8E-15 65.1 4.3 59 25-84 2-60 (61)
37 PF13855 LRR_8: Leucine rich r 99.1 2.3E-10 5.1E-15 64.6 4.7 60 1-60 2-61 (61)
38 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.8E-16 89.2 -0.8 132 22-164 282-413 (490)
39 KOG2120 SCF ubiquitin ligase, 98.9 9.3E-12 2E-16 89.7 -6.3 182 2-188 187-376 (419)
40 KOG2982 Uncharacterized conser 98.7 2.2E-09 4.7E-14 77.7 0.8 159 2-164 73-263 (418)
41 KOG1644 U2-associated snRNP A' 98.7 4.8E-08 1E-12 66.9 5.8 128 49-185 20-150 (233)
42 KOG0531 Protein phosphatase 1, 98.7 3.1E-09 6.7E-14 83.0 -0.7 109 20-135 91-200 (414)
43 KOG3665 ZYG-1-like serine/thre 98.7 2.9E-09 6.3E-14 87.2 -1.0 145 24-170 122-270 (699)
44 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.4E-13 85.9 2.3 84 20-105 567-650 (889)
45 COG5238 RNA1 Ran GTPase-activa 98.6 1.6E-08 3.6E-13 72.4 0.8 149 45-194 89-261 (388)
46 KOG0531 Protein phosphatase 1, 98.5 6.8E-09 1.5E-13 81.1 -1.9 169 2-188 97-268 (414)
47 KOG1859 Leucine-rich repeat pr 98.4 1.5E-08 3.2E-13 81.5 -2.5 84 94-188 184-267 (1096)
48 KOG4658 Apoptotic ATPase [Sign 98.4 2E-07 4.4E-12 78.5 4.0 163 22-190 543-732 (889)
49 KOG4579 Leucine-rich repeat (L 98.3 9.3E-09 2E-13 66.2 -4.3 111 25-138 28-140 (177)
50 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-09 5.1E-14 77.5 -8.3 156 26-185 187-348 (419)
51 KOG1859 Leucine-rich repeat pr 98.3 5.6E-09 1.2E-13 83.8 -7.3 126 26-163 166-292 (1096)
52 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.2E-11 45.9 3.2 36 1-37 2-37 (44)
53 COG5238 RNA1 Ran GTPase-activa 98.3 4.4E-07 9.6E-12 65.2 2.4 176 20-197 26-236 (388)
54 PF12799 LRR_4: Leucine Rich r 98.3 8.4E-07 1.8E-11 46.1 2.6 36 122-163 2-37 (44)
55 KOG3665 ZYG-1-like serine/thre 98.2 4.2E-07 9.1E-12 74.8 1.1 141 48-195 122-270 (699)
56 PF13306 LRR_5: Leucine rich r 98.2 1.6E-05 3.4E-10 51.7 8.0 122 19-152 7-128 (129)
57 KOG4579 Leucine-rich repeat (L 98.2 7.7E-08 1.7E-12 62.1 -3.2 105 4-112 31-138 (177)
58 PF13306 LRR_5: Leucine rich r 98.1 1.4E-05 3.1E-10 51.9 6.5 125 66-202 5-129 (129)
59 PRK15386 type III secretion pr 98.0 0.00012 2.6E-09 56.5 11.1 55 22-83 50-104 (426)
60 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.7E-10 54.7 5.2 105 24-131 42-150 (233)
61 KOG2982 Uncharacterized conser 97.9 9.6E-07 2.1E-11 64.3 -1.6 162 22-189 69-263 (418)
62 PRK15386 type III secretion pr 97.8 0.00013 2.9E-09 56.3 8.1 123 45-185 49-187 (426)
63 KOG2739 Leucine-rich acidic nu 97.5 3E-05 6.6E-10 55.4 0.4 39 72-110 64-104 (260)
64 KOG2739 Leucine-rich acidic nu 97.4 5.9E-05 1.3E-09 54.0 1.5 123 4-129 22-151 (260)
65 KOG2123 Uncharacterized conser 97.4 3.6E-06 7.9E-11 60.8 -5.0 80 48-132 19-99 (388)
66 PF00560 LRR_1: Leucine Rich R 97.3 0.0001 2.3E-09 32.0 0.8 22 176-198 1-22 (22)
67 KOG2123 Uncharacterized conser 96.9 3.6E-05 7.8E-10 55.9 -4.2 102 71-181 17-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.7 0.00097 2.1E-08 28.9 1.2 20 1-21 1-20 (22)
69 KOG4341 F-box protein containi 96.5 2.6E-05 5.6E-10 59.4 -7.4 83 2-84 140-227 (483)
70 KOG3864 Uncharacterized conser 96.3 0.00079 1.7E-08 46.7 -0.6 84 97-185 101-186 (221)
71 KOG1947 Leucine rich repeat pr 96.2 0.00013 2.8E-09 58.2 -5.6 62 47-108 242-306 (482)
72 KOG4341 F-box protein containi 95.7 0.0043 9.3E-08 47.8 1.0 136 22-161 292-437 (483)
73 PF13516 LRR_6: Leucine Rich r 95.6 0.0052 1.1E-07 27.1 0.6 21 176-196 3-23 (24)
74 KOG3864 Uncharacterized conser 95.4 0.0018 4E-08 44.9 -1.6 81 74-159 102-185 (221)
75 PF13504 LRR_7: Leucine rich r 95.0 0.017 3.6E-07 23.2 1.2 11 152-162 3-13 (17)
76 KOG1947 Leucine rich repeat pr 94.8 0.011 2.5E-07 47.1 0.8 111 23-133 187-307 (482)
77 KOG4308 LRR-containing protein 94.7 0.00015 3.2E-09 57.6 -9.9 184 3-189 90-304 (478)
78 smart00369 LRR_TYP Leucine-ric 93.8 0.046 9.9E-07 24.5 1.4 20 176-195 3-22 (26)
79 smart00370 LRR Leucine-rich re 93.8 0.046 9.9E-07 24.5 1.4 20 176-195 3-22 (26)
80 smart00368 LRR_RI Leucine rich 92.5 0.073 1.6E-06 24.4 1.0 21 176-196 3-23 (28)
81 KOG4308 LRR-containing protein 90.9 0.001 2.2E-08 52.9 -10.0 162 2-164 117-304 (478)
82 KOG0473 Leucine-rich repeat pr 89.6 0.0041 8.8E-08 44.4 -6.8 90 91-189 36-125 (326)
83 KOG0473 Leucine-rich repeat pr 83.2 0.017 3.7E-07 41.3 -6.5 85 71-163 40-124 (326)
84 smart00365 LRR_SD22 Leucine-ri 82.9 1.1 2.5E-05 20.1 1.6 14 24-37 2-15 (26)
85 smart00364 LRR_BAC Leucine-ric 81.2 1.2 2.6E-05 20.0 1.3 16 122-137 3-18 (26)
86 KOG3763 mRNA export factor TAP 79.8 1.1 2.5E-05 36.3 1.6 12 120-131 243-254 (585)
87 smart00367 LRR_CC Leucine-rich 74.2 1.5 3.2E-05 19.5 0.5 10 176-185 3-12 (26)
88 KOG3763 mRNA export factor TAP 73.8 1.3 2.8E-05 36.0 0.5 76 3-79 221-307 (585)
89 KOG3735 Tropomodulin and leiom 62.6 2.6 5.5E-05 32.1 0.1 70 121-190 198-270 (353)
90 KOG4242 Predicted myosin-I-bin 45.8 25 0.00055 28.5 3.0 18 49-66 215-232 (553)
91 TIGR00864 PCC polycystin catio 37.5 28 0.0006 34.7 2.4 32 103-134 1-32 (2740)
92 TIGR00864 PCC polycystin catio 34.3 26 0.00056 34.8 1.8 32 6-37 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=3.7e-25 Score=187.86 Aligned_cols=193 Identities=34% Similarity=0.564 Sum_probs=126.6
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++.
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~ 220 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLG 220 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECc
Confidence 56666666666666677777777777777777777766676677777777777777777666666665 67777777777
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+....|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+....+ ..+..+++|++|++++|.
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----PSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----hhHhhccCcCEEECcCCe
Confidence 777766666667777777777777777766666667777777777777766643311 344555556666666666
Q ss_pred CCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
+.+.+|..+..++ +|+.|++++|.+++..|..++.++.|
T Consensus 296 l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 296 LSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred eccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCC
Confidence 5555555555555 55555555555555555555555444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.6e-24 Score=183.95 Aligned_cols=199 Identities=35% Similarity=0.527 Sum_probs=120.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEEC
Confidence 366777777777666777777777777777777777666666666677777777777766655665554 5666666666
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc-------------------h
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-------------------S 141 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------------~ 141 (204)
.+|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+.. .
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 666665555555666666666666666655555555555555666665555544321100 0
Q ss_pred hhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
.+..+..+++|+.|++++|.+.+.+|..+..+. +|+.|++++|.+++.+|+.++.++.+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCC
Confidence 113344455555555555555555555555555 56666666666666666665554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.7e-22 Score=152.43 Aligned_cols=191 Identities=24% Similarity=0.257 Sum_probs=93.4
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (204)
+.|+|+.|.++..-.+.|..-.++++|++++|.|+....+.|..+.+|.+|.++.|.++ .+|...|..+++|+.|++..
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccc
Confidence 34444444444222223333344444444444444444444444444444444444443 34443333344444444444
Q ss_pred Cc------------------------CccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496 83 NR------------------------FSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138 (204)
Q Consensus 83 ~~------------------------~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 138 (204)
|. +..--.+.|..+.++++|++..|.++.....++..++.|+.|++++|.+..+..
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 43 332222344555555566665555554444555555666666666666555532
Q ss_pred cchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496 139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200 (204)
Q Consensus 139 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 200 (204)
+....+++|++|+++.|.++...+..|..+. .|+.|.+++|.++-....+|..+..
T Consensus 311 -----d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 311 -----DSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred -----chhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhh
Confidence 4455556666666666666655555555555 5555555555555444444443333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=9.6e-22 Score=151.22 Aligned_cols=136 Identities=23% Similarity=0.250 Sum_probs=87.9
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeec------------------------C
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILI------------------------N 57 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~------------------------~ 57 (204)
+++|+|++|+++..-.+.|..+.+|..|.++.|+++...+..|..+++|+.|++. .
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 4555666665554444445555555555555555554444444444444444444 4
Q ss_pred CcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCc
Q 047496 58 NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137 (204)
Q Consensus 58 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 137 (204)
|.+. .+.++.|..+.++++|++..|.++..-.+++.+++.|+.|+++.|.+..+.++.|...++|++|+++.|+++.++
T Consensus 255 N~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 255 NDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred cCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 4443 455666667888888888888887555666777788888888888877777777777788888888877777665
Q ss_pred c
Q 047496 138 S 138 (204)
Q Consensus 138 ~ 138 (204)
+
T Consensus 334 ~ 334 (873)
T KOG4194|consen 334 E 334 (873)
T ss_pred h
Confidence 4
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=6.2e-22 Score=130.81 Aligned_cols=165 Identities=28% Similarity=0.416 Sum_probs=107.9
Q ss_pred CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496 22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 101 (204)
.+.+++.|.+++|+++...| .+..+.+|+.|++++|+++ ++|..+. ++++|+.|+++.|++. ..|.+|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 45666677777777664433 3566677777777777765 6666665 6777777777777666 66777777777777
Q ss_pred EeccCCcccc-cccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEE
Q 047496 102 LKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180 (204)
Q Consensus 102 l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L 180 (204)
|++..|++.. ..|..|-.+..|+.|++++|.+...| ..++.+++|+.|.+.+|.+. .+|..++.++ .|+.|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp------~dvg~lt~lqil~lrdndll-~lpkeig~lt-~lrel 178 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP------PDVGKLTNLQILSLRDNDLL-SLPKEIGDLT-RLREL 178 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCC------hhhhhhcceeEEeeccCchh-hCcHHHHHHH-HHHHH
Confidence 7777666642 34555656666666777777666555 35666666777777777666 5666666666 66777
Q ss_pred Eeeccccccccchhhhhhh
Q 047496 181 LITNCSISGNIPQAISTKY 199 (204)
Q Consensus 181 ~l~~n~~~~~~~~~~~~l~ 199 (204)
.+++|+++ .+|..++.+.
T Consensus 179 hiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANLD 196 (264)
T ss_pred hcccceee-ecChhhhhhh
Confidence 77777666 5555555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=9.1e-21 Score=147.48 Aligned_cols=188 Identities=27% Similarity=0.379 Sum_probs=112.1
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (204)
+.|+|++|++. .+|..+....++-.|++++|+|..+.-..|.++..|-.||+++|.+. .+|+.+. .+..|+.|.+++
T Consensus 106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R-RL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR-RLSMLQTLKLSN 182 (1255)
T ss_pred eeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH-HHhhhhhhhcCC
Confidence 44555555544 44544444455555555555555443344444555555555555553 4454443 444555555555
Q ss_pred CcCccCCCccccCCCCCCEEeccCCccc-ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 83 NRFSGTIPSSITNASKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
|.+.----..+..+++|..|++++..-+ ..+|..+..+.+|..++++.|.+...| +.+-.+++|+.|++++|.
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP------ecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP------ECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch------HHHhhhhhhheeccCcCc
Confidence 5443111122334444445555443222 235566666777888888888777666 567777888888888888
Q ss_pred CCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
++ ++.-....+. ++++|+++.|+++ .+|+++|++++|+
T Consensus 257 it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred ee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHH
Confidence 87 5555566666 8888888888887 7888888888764
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=6.2e-21 Score=126.12 Aligned_cols=182 Identities=31% Similarity=0.509 Sum_probs=155.1
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++.|.+++|.+. .+|+.++++.+|+.|++.+|.+.. .|..++.++.|++|++.-|.+. .+|.+++ ++|.|+.||+.
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVLDLT 110 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccC-CCchhhhhhcc
Confidence 467889999988 788889999999999999999984 4666899999999999999886 8899998 89999999999
Q ss_pred CCcCc-cCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 82 LNRFS-GTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
+|.+. ..+|..|..+..|+.|.+++|.+. ..|..++.+++|+.|.+.+|.+.+.| ..++.+..|++|++++|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lp------keig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLP------KEIGDLTRLRELHIQGN 183 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCc------HHHHHHHHHHHHhcccc
Confidence 99886 357889999999999999999998 78899999999999999999998887 67888999999999999
Q ss_pred cCCCCCCccccccc--cCccEEEeeccccccccchhh
Q 047496 161 PLDGFLPSSIGNLS--MSLETLLITNCSISGNIPQAI 195 (204)
Q Consensus 161 ~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~ 195 (204)
+++ .+|..++.+. .+-+.+.+..|.+...+.+.|
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 998 6777776543 233556677777665555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.4e-20 Score=146.54 Aligned_cols=186 Identities=26% Similarity=0.382 Sum_probs=127.1
Q ss_pred EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcce-eecCCccCCCCCCccEEEcCCC
Q 047496 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF-GSLPSRIGLSLPTVEHLNLELN 83 (204)
Q Consensus 5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~ 83 (204)
|+|++|++. .+|+.+..+.+|++|.+++|++....-..+-.++.|++|.+++++.+ ..+|..+- .+.+|..++++.|
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSEN 232 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhcccccc
Confidence 334444433 34444444444444455444443322222333445555555555433 34566655 6778888888888
Q ss_pred cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
.+. .+|+.+..+.+|+.|++++|.++ .+....+.+.+|+.|+++.|+++..| .++..+++|+.|.+.+|+++
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP------~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLP------DAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccch------HHHhhhHHHHHHHhccCccc
Confidence 877 77888888888888888888887 34455677788888888888888777 67888888999988888875
Q ss_pred -CCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 164 -GFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 164 -~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+-+|..++++. +|+.+...+|.+. .+|+.+|+|..|+
T Consensus 305 FeGiPSGIGKL~-~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 305 FEGIPSGIGKLI-QLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred ccCCccchhhhh-hhHHHHhhccccc-cCchhhhhhHHHH
Confidence 24788888888 8888888888886 8899999888775
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=2.2e-20 Score=138.04 Aligned_cols=184 Identities=27% Similarity=0.369 Sum_probs=118.6
Q ss_pred eEEccCCccccccChhccCCCCCcEEEccCccccccC----------------------CccccCCCccceeeecCCcce
Q 047496 4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV----------------------SAPIFNMSTLKIIILINNSLF 61 (204)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~l~~L~~L~l~~~~~~ 61 (204)
.++.++|++. .+|..+..+..+.++++++|.+.... |+.+..+.++..+++.++.+.
T Consensus 95 ~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 95 SLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred HhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence 4445555554 55555555555555555555554322 222333444444444444443
Q ss_pred eecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccch
Q 047496 62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS 141 (204)
Q Consensus 62 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 141 (204)
+.|+... .|..|++++...|.++ .+|+.++.+.+|..|++..|.+. ..| .|..+..|.+++++.|++...|.
T Consensus 174 -~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpa--- 245 (565)
T KOG0472|consen 174 -ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPA--- 245 (565)
T ss_pred -hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHH---
Confidence 3444433 3555666666666555 66666666666666666666666 445 46667777777777777766653
Q ss_pred hhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+..++++++..+|+.+|++. +.|+.++.+. +|++||+++|.|+ ..|.+++++ +|+
T Consensus 246 --e~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 246 --EHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLK 300 (565)
T ss_pred --HHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc-eee
Confidence 34568889999999999999 8899998888 8999999999998 667778877 554
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=7.3e-19 Score=129.62 Aligned_cols=192 Identities=23% Similarity=0.309 Sum_probs=131.8
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecC-CcceeecCCccCCCCCCccEEEcC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILIN-NSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
+.++|.-|+|....+.+|+.+++|+.|++++|.|+.+.|++|.++.++..|.+.+ |+++ .+|++.+..+..++.|.+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence 5688999999966677899999999999999999999999999999998887777 7776 7777666555554444444
Q ss_pred ------------------------CCcCccCCCc-cccCCCCCCEEeccCCc----------------------------
Q 047496 82 ------------------------LNRFSGTIPS-SITNASKLTLLKLGGNT---------------------------- 108 (204)
Q Consensus 82 ------------------------~~~~~~~~~~-~~~~~~~L~~l~l~~~~---------------------------- 108 (204)
+|.+. .+++ .+..+..++.+++.-+.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 44333 1221 33333333333322211
Q ss_pred ---------------------------------cccccc-ccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496 109 ---------------------------------FSGLIP-DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 154 (204)
Q Consensus 109 ---------------------------------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 154 (204)
.....| ..|..+++|+.+++++|.++.+.+ .+|.+..++++
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-----~aFe~~a~l~e 302 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-----GAFEGAAELQE 302 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-----hhhcchhhhhh
Confidence 000111 134556677777777777777644 56777777777
Q ss_pred EEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 155 LNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 155 l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|.+..|++...-..+|.++. .|++|++.+|+|+...|.+|..+.+|.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEecccccccceee
Confidence 77777777644455666777 899999999999999999998776553
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.5e-17 Score=125.10 Aligned_cols=142 Identities=28% Similarity=0.331 Sum_probs=58.2
Q ss_pred ccCCCCCcEEEccCccccccCCccccCCC---ccceeeecCCcceee----cCCccCCCC-CCccEEEcCCCcCccC---
Q 047496 20 IANLRNLEALALGMNNLVGVVSAPIFNMS---TLKIIILINNSLFGS----LPSRIGLSL-PTVEHLNLELNRFSGT--- 88 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~--- 88 (204)
+..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+.+. +...+. .+ ++|+++++.+|.++..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHH
Confidence 34445555555555554432222222222 255555555544311 111111 23 4555555555554411
Q ss_pred -CCccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 89 -IPSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 89 -~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
....+..+.+|++|++++|.+.+. .+..+...++|+.|++++|.+.+.... .+...+..+++|++|++++|.++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS-ALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH-HHHHHhcccCCCCEEecCCCcCc
Confidence 112233334455555555544421 112233334555555555544322110 11223344455555555555544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=4.7e-15 Score=127.84 Aligned_cols=185 Identities=26% Similarity=0.302 Sum_probs=105.0
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|+.|++.++.+. .++..+..+++|+.++++++......|. +..+++|+.|++++|.....+|..+. .+++|+.|++.
T Consensus 613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~ 689 (1153)
T PLN03210 613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMS 689 (1153)
T ss_pred CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCC
Confidence 556666666655 4555566677777777776654334443 55667777777777665556666655 66777777777
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhh------------------
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL------------------ 143 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------ 143 (204)
+|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|+++++.+..+|....+.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 665433455443 5666677776666443333321 245566666666655544321000
Q ss_pred ------hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchh
Q 047496 144 ------SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQA 194 (204)
Q Consensus 144 ------~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 194 (204)
......++|++|++++|.....+|..+..++ +|+.|++++|...+.+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCC
Confidence 0001124566666666665556666666666 6777777666433344443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=1.3e-18 Score=128.81 Aligned_cols=185 Identities=26% Similarity=0.411 Sum_probs=140.9
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++++++.+|.+. ..|++++++..++.++.++|++.. .|.....+.++..++.+.+.+. .++++++ .+..++.++..
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~ 145 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLEDLDAT 145 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhhhhhcc
Confidence 578899999887 899999999999999999999984 4666778888888888888876 7777776 56667777766
Q ss_pred CCcCccCCCccccC-----------------------CCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496 82 LNRFSGTIPSSITN-----------------------ASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138 (204)
Q Consensus 82 ~~~~~~~~~~~~~~-----------------------~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 138 (204)
+|.++ ..|+++.. |+.|++++...|-+. ..|..++.+.+|+.|++..|.+...|
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP- 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP- 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-
Confidence 66665 44444443 445555555555554 45666666667777777777666654
Q ss_pred cchhhhccccCCCccEEEeeCCcCCCCCCcccc-ccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG-NLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 139 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.|.+|..|++++++.|.+. .+|.+.. .+. ++..||+.+|+++ +.|+.+|.+++|.
T Consensus 223 ------ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 223 ------EFPGCSLLKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLK-EVPDEICLLRSLE 278 (565)
T ss_pred ------CCCccHHHHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccc-cCchHHHHhhhhh
Confidence 5888889999999999887 5666666 455 8999999999998 8899999888664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=1.1e-14 Score=125.59 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=50.9
Q ss_pred CCCEEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchh-------------hhcc-ccCCCccEEEeeCCcC
Q 047496 98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSF-------------LSSL-ANCKKLRSLNLIGNPL 162 (204)
Q Consensus 98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-------------~~~~-~~~~~L~~l~l~~n~~ 162 (204)
+|+.|++++|.....+|..++.+++|+.|++++|. +..+|....+ ...+ ...++|++|++++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 45566666665554566667777777777776653 3333321000 0000 0013455555555555
Q ss_pred CCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 163 DGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
. .+|..+..++ +|+.|++++|.--..+|..+..+++|
T Consensus 859 ~-~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 859 E-EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred c-cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCC
Confidence 5 4555555555 66666666653222344444444433
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=1.3e-16 Score=120.00 Aligned_cols=193 Identities=23% Similarity=0.255 Sum_probs=135.4
Q ss_pred CcceEEccCCccccccChhccCCCC---CcEEEccCccccccC----CccccCC-CccceeeecCCcceeec----CCcc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRN---LEALALGMNNLVGVV----SAPIFNM-STLKIIILINNSLFGSL----PSRI 68 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~~----~~~~ 68 (204)
+|+.|++++|.+....+..+..+.. |+.|++++|.+.+.. ...+..+ ++|+.|++++|.+++.. +..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 4789999999987656666655555 999999999887422 2234456 89999999999987332 2222
Q ss_pred CCCCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccc
Q 047496 69 GLSLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKL 140 (204)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~ 140 (204)
..+++|++|++.+|.+... ++..+...++|++|++++|.+.+.. ...+..+++|+.|++++|.+.+....
T Consensus 162 -~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~- 239 (319)
T cd00116 162 -RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA- 239 (319)
T ss_pred -HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH-
Confidence 2567899999999988732 2233455679999999999886443 34566788999999999988753210
Q ss_pred hhhhcc-ccCCCccEEEeeCCcCCCC----CCccccccccCccEEEeeccccccccchhhh
Q 047496 141 SFLSSL-ANCKKLRSLNLIGNPLDGF----LPSSIGNLSMSLETLLITNCSISGNIPQAIS 196 (204)
Q Consensus 141 ~~~~~~-~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 196 (204)
.+...+ ...+.|+++++++|.+++. +...+...+ +|+++++++|.++......+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~-~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-SLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC-CccEEECCCCCCcHHHHHHHH
Confidence 011111 1347899999999998732 233344454 899999999999976444333
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.8e-14 Score=117.76 Aligned_cols=87 Identities=30% Similarity=0.259 Sum_probs=57.3
Q ss_pred CCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCc
Q 047496 98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177 (204)
Q Consensus 98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L 177 (204)
+|+.|++++|.++. .|.. ..+|+.|++++|.+..+|. . ..+|+.|++++|.++ .+|..+..++ +|
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~------l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-~L 447 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPM------L---PSGLLSLSVYRNQLT-RLPESLIHLS-SE 447 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCc------c---hhhhhhhhhccCccc-ccChHHhhcc-CC
Confidence 45555555555542 2321 2456666666666665542 1 235677888888887 6788888887 88
Q ss_pred cEEEeeccccccccchhhhhhh
Q 047496 178 ETLLITNCSISGNIPQAISTKY 199 (204)
Q Consensus 178 ~~L~l~~n~~~~~~~~~~~~l~ 199 (204)
+.|++++|++++..+..+.++.
T Consensus 448 ~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 448 TTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred CeEECCCCCCCchHHHHHHHHh
Confidence 9999999999888887775543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.9e-14 Score=117.94 Aligned_cols=161 Identities=24% Similarity=0.391 Sum_probs=80.8
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++.|++++|.+. .+|..+. .+|++|++++|.++.. |..+ ..+|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls 270 (754)
T PRK15370 201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATL--PDTIQEMELSINRIT-ELPERLP---SALQSLDLF 270 (754)
T ss_pred CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhh--hccccEEECcCCccC-cCChhHh---CCCCEEECc
Confidence 567777777776 4555443 4677777777766643 3222 124566666666654 4554332 345555555
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCccccccccccc-------------------CCCCCcEEEccCccCCCCcccchh
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG-------------------NLRNLEWLGLAYNNLTSSTSKLSF 142 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-------------------~l~~L~~L~l~~~~~~~~~~~~~~ 142 (204)
+|.+. .+|..+. .+|+.|++++|.++. +|..+. ..++|+.|++++|.+..+|.
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~---- 342 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA---- 342 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh----
Confidence 55554 3443332 245555555554442 121110 11345555555555544432
Q ss_pred hhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496 143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
.+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.++
T Consensus 343 --~l--~~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt 380 (754)
T PRK15370 343 --SL--PPELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT 380 (754)
T ss_pred --hh--cCcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC
Confidence 11 145666666666655 3443331 25566666666555
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=7.1e-14 Score=114.61 Aligned_cols=173 Identities=25% Similarity=0.401 Sum_probs=123.7
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
.+.|+++++++. .+|..+. +.++.|++++|.++.. |..+ ..+|+.|++++|.++ .+|..+. +.|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLT-SIPATLP---DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence 467889888877 5666554 5799999999999965 3333 258999999999987 7777553 579999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccch----hhh----cc-----cc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS----FLS----SL-----AN 148 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~----~~-----~~ 148 (204)
+|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. .+. .+ .-
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL 323 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence 99998 6776554 57999999999988 4566443 589999999999887764210 000 00 01
Q ss_pred CCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhh
Q 047496 149 CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195 (204)
Q Consensus 149 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 195 (204)
.++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+
T Consensus 324 ~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 324 PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhh
Confidence 246777777777776 3554443 37888888888887 455443
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.52 E-value=2.7e-16 Score=121.05 Aligned_cols=178 Identities=26% Similarity=0.405 Sum_probs=148.9
Q ss_pred eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496 4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN 83 (204)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 83 (204)
..+++.|++. .+|..++.+-.|+.+.+++|.+.. .|..+..+..|.+++++.|+++ .+|..++ .+| |+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecC
Confidence 3566777766 777777777888888888888774 4666788889999999999997 8888887 565 899999999
Q ss_pred cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
+++ .+|..++....|..++.+.|.+. ..|..++.+..|+.|.+..|++..+| +.+..+ .|..||++.|+++
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp------~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP------EELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC------HHHhCC-ceeeeecccCcee
Confidence 998 88888888888999999999988 56788899999999999999998887 455544 4899999999999
Q ss_pred CCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496 164 GFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK 198 (204)
Q Consensus 164 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 198 (204)
.+|..|+.+. .|++|-|++|.++ ..|..+|..
T Consensus 225 -~iPv~fr~m~-~Lq~l~LenNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 225 -YLPVDFRKMR-HLQVLQLENNPLQ-SPPAQICEK 256 (722)
T ss_pred -ecchhhhhhh-hheeeeeccCCCC-CChHHHHhc
Confidence 8899999999 9999999999998 567777643
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.5e-13 Score=112.49 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=28.7
Q ss_pred CccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 151 KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 151 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..++.++.++
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred CCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence 4556666666655 34432 225677777777776 6777777776654
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=3.5e-16 Score=126.18 Aligned_cols=36 Identities=36% Similarity=0.419 Sum_probs=27.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCcccc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLV 37 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 37 (204)
++++++++++.+. .+|.+++.+.+|+.+...+|.++
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence 3677778877776 56677788888888888887764
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=5.4e-16 Score=114.69 Aligned_cols=181 Identities=22% Similarity=0.260 Sum_probs=138.7
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCC---------------------
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINN--------------------- 58 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~--------------------- 58 (204)
+|++|+|++|.|....|++|..+..+..|-+.+ |+|+......|.++..++.|.+..+
T Consensus 92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence 489999999999988899999999988887776 8898877666766655555555444
Q ss_pred ---cceeecCCccCCCCCCccEEEcCCCc------------------------------------Ccc------------
Q 047496 59 ---SLFGSLPSRIGLSLPTVEHLNLELNR------------------------------------FSG------------ 87 (204)
Q Consensus 59 ---~~~~~~~~~~~~~~~~L~~L~l~~~~------------------------------------~~~------------ 87 (204)
.+. .++...++.+..++.+.+..+. +..
T Consensus 172 yDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 172 YDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred cchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 332 3444444455555555444432 000
Q ss_pred -------------CCC-ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc
Q 047496 88 -------------TIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR 153 (204)
Q Consensus 88 -------------~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 153 (204)
..| ..|.++++|+.+++++|.++++-+.+|.....+++|.+..|.+..+.. ..+.++..|+
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-----~~f~~ls~L~ 325 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-----GMFQGLSGLK 325 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-----Hhhhccccce
Confidence 000 124567899999999999998888899999999999999999987754 5789999999
Q ss_pred EEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496 154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 154 ~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
.|++.+|+|+...|.+|..+. .|.+|++-.|.+.
T Consensus 326 tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 326 TLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFN 359 (498)
T ss_pred eeeecCCeeEEEecccccccc-eeeeeehccCccc
Confidence 999999999988899998888 8999999888664
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=5.3e-16 Score=125.15 Aligned_cols=173 Identities=28% Similarity=0.354 Sum_probs=95.5
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCcccc-------------------------CCCccceeeecC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-------------------------NMSTLKIIILIN 57 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~ 57 (204)
+.|+...|.+. .+|+.......|++|+++.|.+.......+. ..+.|+.|.+.+
T Consensus 290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 33444444444 4455455566666666666665433222111 122344444555
Q ss_pred CcceeecCCccCCCCCCccEEEcCCCcCccCCC-ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496 58 NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 58 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
|.+++..-+.+. .++.|+.|++++|+++ .+| ..+.++..|++|++++|.++ .+|..+..+..|+.|...+|++..+
T Consensus 369 N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 369 NHLTDSCFPVLV-NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred Ccccccchhhhc-cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec
Confidence 554444333333 4555555555555555 333 23444555555555555555 3445555555555555555555555
Q ss_pred cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeecccc
Q 047496 137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI 187 (204)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 187 (204)
| .+..++.|+.+|++.|.++..........+ +|++||+++|.-
T Consensus 446 P-------e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p-~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 P-------ELAQLPQLKVLDLSCNNLSEVTLPEALPSP-NLKYLDLSGNTR 488 (1081)
T ss_pred h-------hhhhcCcceEEecccchhhhhhhhhhCCCc-ccceeeccCCcc
Confidence 4 567788899999999998743333322324 899999999964
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=2.9e-13 Score=104.85 Aligned_cols=178 Identities=31% Similarity=0.472 Sum_probs=133.2
Q ss_pred cceEEccCCccccccChhccCCC-CCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLR-NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++.|++.++.+. .+++...... +|+.|++++|.+... +..+..+++|+.|++++|++. .++.... ..+.|+.|++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L~l 193 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNLDL 193 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhheec
Confidence 567778888777 6666666664 888888888888754 234667888888888888886 6676554 5788888888
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
+++.+. .++........|.++.+++|... ..+..+..+.++..+.+..|++...+ ..++.++.++++++++|
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~------~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP------ESIGNLSNLETLDLSNN 265 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeecc------chhccccccceeccccc
Confidence 888887 66665556666888888888644 34566777888888888888776643 45777888999999999
Q ss_pred cCCCCCCccccccccCccEEEeeccccccccchh
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQA 194 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 194 (204)
.++. ++. +.... +++.|++++|.+....|..
T Consensus 266 ~i~~-i~~-~~~~~-~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 266 QISS-ISS-LGSLT-NLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccc-ccc-ccccC-ccCEEeccCccccccchhh
Confidence 9984 443 77777 8999999999887655443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=6.8e-15 Score=113.50 Aligned_cols=166 Identities=26% Similarity=0.383 Sum_probs=143.6
Q ss_pred CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496 22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 101 (204)
.+..-...+++.|++. ..|..+..+..|+.+.++.|.+- .+|..+. .+..|..++++.|.++ .+|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3455667788888887 44666777788889999888875 7888887 7899999999999998 8899999998 999
Q ss_pred EeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEE
Q 047496 102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181 (204)
Q Consensus 102 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~ 181 (204)
+-+++|+++ .+|..++....|..|+.+.|++...+ ..++++.+|+.+++..|.+. .+|.++..++ |.+||
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slp------sql~~l~slr~l~vrRn~l~-~lp~El~~Lp--Li~lD 217 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLP------SQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--LIRLD 217 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhhch------HHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--eeeee
Confidence 999999998 77888998899999999999999887 56888899999999999998 6788888775 99999
Q ss_pred eeccccccccchhhhhhhhhcc
Q 047496 182 ITNCSISGNIPQAISTKYLFQN 203 (204)
Q Consensus 182 l~~n~~~~~~~~~~~~l~~l~~ 203 (204)
+++|+++ .+|-+|+++.+|+.
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred cccCcee-ecchhhhhhhhhee
Confidence 9999998 88999999999874
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9e-14 Score=104.20 Aligned_cols=184 Identities=22% Similarity=0.185 Sum_probs=114.1
Q ss_pred CcceEEccCCccccccC-hhccCCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccE
Q 047496 1 MLKGIYLGYNKLHGEIP-HEIANLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEH 77 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 77 (204)
+|+...+.++.+..... .....+++++.|++++|-+... .......+|+|+.|+++.|.+.-.........++.++.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 36677778777662211 3456788899999998866543 22334468888889998888753333333335778888
Q ss_pred EEcCCCcCccC-CCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEE
Q 047496 78 LNLELNRFSGT-IPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLN 156 (204)
Q Consensus 78 L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 156 (204)
|.++.|+++.. +......++++..|.+..|............+..|++|++++|++-+++.. ...+.++.|+.++
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~----~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG----YKVGTLPGLNQLN 277 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc----cccccccchhhhh
Confidence 88888887632 223345567777777777753223223344466777778877777666421 3556677777777
Q ss_pred eeCCcCCCC-CCcc-----ccccccCccEEEeecccccc
Q 047496 157 LIGNPLDGF-LPSS-----IGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 157 l~~n~~~~~-~~~~-----~~~~~~~L~~L~l~~n~~~~ 189 (204)
++.+.+... .|+. ....+ +|++|+++.|++.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRD 315 (505)
T ss_pred ccccCcchhcCCCccchhhhcccc-cceeeecccCcccc
Confidence 777776531 2221 12233 77777777777753
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.7e-12 Score=88.37 Aligned_cols=127 Identities=29% Similarity=0.365 Sum_probs=44.1
Q ss_pred CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496 46 NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW 125 (204)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 125 (204)
+...+++|+++++.++ .+ +.+...+.+|+.|++++|.+. .+ .++..++.|++|++++|.++...+.....+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 4446677777777765 32 334334667777777777776 33 34667777888888888777442222235777888
Q ss_pred EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCc----cccccccCccEEEe
Q 047496 126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS----SIGNLSMSLETLLI 182 (204)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~L~l 182 (204)
|++++|.+.+... ...++.+++|+.|++.+|+++.. +. .+..++ +|+.||-
T Consensus 93 L~L~~N~I~~l~~----l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP-~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNE----LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLP-SLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCC----CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-T-T-SEETT
T ss_pred EECcCCcCCChHH----hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcC-hhheeCC
Confidence 8888887766642 25566778888888888887643 22 234455 7777653
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=1.2e-12 Score=95.68 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=120.4
Q ss_pred cceEEccCCccccc----cChhccCCCCCcEEEccCc---cccccCCc-------cccCCCccceeeecCCcceeecCCc
Q 047496 2 LKGIYLGYNKLHGE----IPHEIANLRNLEALALGMN---NLVGVVSA-------PIFNMSTLKIIILINNSLFGSLPSR 67 (204)
Q Consensus 2 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~ 67 (204)
++.++|++|.+... +...+.+.++|+..+++.- ......|. .+...++|+++++|.|-+....++.
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 56788888887743 3334455667777777642 11112222 2335668888888888654222222
Q ss_pred ---cCCCCCCccEEEcCCCcCccCCC-------------ccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEE
Q 047496 68 ---IGLSLPTVEHLNLELNRFSGTIP-------------SSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLG 127 (204)
Q Consensus 68 ---~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~ 127 (204)
+..++..|++|.+++|++..... ......++|+.+..++|.+... ....++..+.|+.+.
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence 22357778888888888763211 2234456788888888877532 234566777888888
Q ss_pred ccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC----CCccccccccCccEEEeeccccccccchhhh
Q 047496 128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF----LPSSIGNLSMSLETLLITNCSISGNIPQAIS 196 (204)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 196 (204)
++.|.+..... .....++.+|++|+.||+.+|-++.+ +...+..++ +|+.+.+++|-+......+|.
T Consensus 192 ~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 192 LSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred EecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHHH
Confidence 88887765433 34556777888888888888877543 223344555 777888888877766555554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.1e-11 Score=84.42 Aligned_cols=129 Identities=26% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCCCCcEEEccCccccccCCcccc-CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc-cCCCCC
Q 047496 22 NLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKL 99 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L 99 (204)
+...+++|++++|.|+.+. .+. .+.+|+.|++++|.+. .+. ++. .++.|++|++++|.++ .+...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~-~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLE-GLP-GLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-ccc-Ccc-ChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 4456788999999888642 233 4678899999999886 443 343 6888999999999998 554444 357899
Q ss_pred CEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEee
Q 047496 100 TLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLI 158 (204)
Q Consensus 100 ~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 158 (204)
++|.+++|.+.... -..+..+++|+.|++.+|++...+. -....+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh--HHHHHHHHcChhheeCCE
Confidence 99999999886432 2457788999999999998876532 122356678889888754
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=8.7e-11 Score=95.70 Aligned_cols=107 Identities=33% Similarity=0.576 Sum_probs=58.0
Q ss_pred ccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496 75 VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 154 (204)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 154 (204)
++.|++.++.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+....+ ..++.+++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-----~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-----ESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-----hHHhcCCCCCE
Confidence 4455555555555555555555556666665555555555555555556666666555543311 34555555666
Q ss_pred EEeeCCcCCCCCCccccccccCccEEEeeccc
Q 047496 155 LNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186 (204)
Q Consensus 155 l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 186 (204)
|++++|.+++.+|..+.....++..+++++|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 66666655555555554432244555555553
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=6.4e-11 Score=96.49 Aligned_cols=106 Identities=31% Similarity=0.568 Sum_probs=79.8
Q ss_pred CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105 (204)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (204)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|+.+. .+++|+.|++++|.+...+|..+..+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 66778888887777777777788888888888887777777665 67788888888888777777777788888888888
Q ss_pred CCcccccccccccCC-CCCcEEEccCcc
Q 047496 106 GNTFSGLIPDTIGNL-RNLEWLGLAYNN 132 (204)
Q Consensus 106 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 132 (204)
+|.+.+..|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 888877777766543 455667777664
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.7e-12 Score=96.45 Aligned_cols=189 Identities=24% Similarity=0.247 Sum_probs=132.2
Q ss_pred CcceEEccCCcccc--ccChhccCCCCCcEEEccCccccccCCcc-ccCCCccceeeecCCcceeecCCccCCCCCCccE
Q 047496 1 MLKGIYLGYNKLHG--EIPHEIANLRNLEALALGMNNLVGVVSAP-IFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEH 77 (204)
Q Consensus 1 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 77 (204)
+++.|+++.|-+.. .+......+++|+.|+++.|.+.-..... -..+++++.|.++.|.+++.--..+...+|.|+.
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~ 226 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV 226 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence 36788999886652 33344567899999999999877433221 2257899999999999874433333347899999
Q ss_pred EEcCCCcCccCCCccccCCCCCCEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcc-cchhhhccccCCCccEE
Q 047496 78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTS-KLSFLSSLANCKKLRSL 155 (204)
Q Consensus 78 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l 155 (204)
|++..|............+..|++|++++|.+.... ....+.++.|..|.++.+++.++.. .-...+-....++|+.|
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence 999998422132333455678999999999886432 2457889999999999999877621 00011224557899999
Q ss_pred EeeCCcCC-CCCCccccccccCccEEEeeccccccc
Q 047496 156 NLIGNPLD-GFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 156 ~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
++..|++. +.....++.+. +|++|.+..|.++.+
T Consensus 307 ~i~~N~I~~w~sl~~l~~l~-nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 307 NISENNIRDWRSLNHLRTLE-NLKHLRITLNYLNKE 341 (505)
T ss_pred ecccCccccccccchhhccc-hhhhhhccccccccc
Confidence 99999984 23445666666 888888888877653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=4.4e-12 Score=91.58 Aligned_cols=129 Identities=28% Similarity=0.361 Sum_probs=74.3
Q ss_pred CccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEE
Q 047496 48 STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127 (204)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~ 127 (204)
..|+++|+++|.++ .+.+++. -.|+++.|++++|++. .+ ..+..+++|+.|++++|.++. ...+=..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 34666666666664 4444443 4566666666666665 22 225566666666666666552 223333455666666
Q ss_pred ccCccCCCCcccchhhhccccCCCccEEEeeCCcCCC-CCCccccccccCccEEEeecccccc
Q 047496 128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG-FLPSSIGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~ 189 (204)
+++|.+.+.. .+..+-+|..||+++|.|.. +--..++.++ .|+++.+.+|++.+
T Consensus 359 La~N~iE~LS-------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETLS-------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhh-------hhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccc
Confidence 6666555442 34555666777777776632 2233456666 67777777777663
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=4.3e-11 Score=92.82 Aligned_cols=167 Identities=38% Similarity=0.503 Sum_probs=119.9
Q ss_pred ccCCCCCcEEEccCccccccCCccccCCC-ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496 20 IANLRNLEALALGMNNLVGVVSAPIFNMS-TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK 98 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (204)
+.....++.+++.++.++...+. ..... +|+.|+++++.+. .++..+. .+++|+.|++..|.+. .++......++
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~-~l~~~~~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSN 187 (394)
T ss_pred hhcccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh-hhhhhhhhhhh
Confidence 44556788888888888755443 34453 8888888888886 6654555 7888888888888887 66665557788
Q ss_pred CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCcc
Q 047496 99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE 178 (204)
Q Consensus 99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 178 (204)
++.++++++.+. ..|........|+++.+++|.....+ ..+..+.++..+.+..|++. ..+..+..++ +++
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~-~l~ 258 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLE-DLPESIGNLS-NLE 258 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceee-eccchhcccc-ccc
Confidence 888888888887 45555566667888888888543433 45667777888888888876 3356667777 899
Q ss_pred EEEeeccccccccchhhhhhhhh
Q 047496 179 TLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 179 ~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
.|++++|.++.. +. ++.+..+
T Consensus 259 ~L~~s~n~i~~i-~~-~~~~~~l 279 (394)
T COG4886 259 TLDLSNNQISSI-SS-LGSLTNL 279 (394)
T ss_pred eecccccccccc-cc-ccccCcc
Confidence 999999999854 33 5544443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=3.5e-12 Score=93.31 Aligned_cols=183 Identities=21% Similarity=0.224 Sum_probs=99.2
Q ss_pred cceEEccCCccccccChhc----cCCCCCcEEEccCccccccCCc-------------cccCCCccceeeecCCcceeec
Q 047496 2 LKGIYLGYNKLHGEIPHEI----ANLRNLEALALGMNNLVGVVSA-------------PIFNMSTLKIIILINNSLFGSL 64 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~ 64 (204)
|++++|++|-+....++.| .++..|++|++.+|.+....-. ....-+.|+++....|.+. ..
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ 172 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NG 172 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cc
Confidence 5666666666554444333 3456666666666665432111 1223456666666666553 21
Q ss_pred C----CccCCCCCCccEEEcCCCcCccCC----CccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCcc
Q 047496 65 P----SRIGLSLPTVEHLNLELNRFSGTI----PSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNN 132 (204)
Q Consensus 65 ~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 132 (204)
+ ...++..+.|+.+.+.+|++.... ...+..++.|+.|++.+|.++.. +...+..|++|+++++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 1 122334566777777666664221 23456667777777777766422 33455666777777777776
Q ss_pred CCCCcccchhhhccc-cCCCccEEEeeCCcCCCCCCc----cccccccCccEEEeecccc
Q 047496 133 LTSSTSKLSFLSSLA-NCKKLRSLNLIGNPLDGFLPS----SIGNLSMSLETLLITNCSI 187 (204)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~~ 187 (204)
+..-.. .++.+++. ..|+|+.+.+.+|.++..... .+... +.|+.|++++|.+
T Consensus 253 l~~~Ga-~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek-~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGA-IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK-PDLEKLNLNGNRL 310 (382)
T ss_pred cccccH-HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc-hhhHHhcCCcccc
Confidence 655432 22333332 346677777777776532111 11222 3677777777766
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.8e-10 Score=65.06 Aligned_cols=59 Identities=34% Similarity=0.447 Sum_probs=30.1
Q ss_pred CCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496 25 NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84 (204)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 84 (204)
+|++|++++|.++...+..|.++++|++|++++|.+. .+++..+..+++|++|++.+|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555444445555555555555555554 4444444455555555555543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=2.3e-10 Score=64.55 Aligned_cols=60 Identities=37% Similarity=0.474 Sum_probs=41.5
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 60 (204)
+|++|++++|++....+..|..+++|++|++++|.++...+..|.++++|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 366777777777644445667777777777777777766666777777777777777653
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.3e-11 Score=89.22 Aligned_cols=132 Identities=24% Similarity=0.348 Sum_probs=94.1
Q ss_pred CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496 22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 101 (204)
....|+++|+++|.|+.+ .+...-.|.++.|++++|.+. .+.. +. .+++|+.||+++|.++ .....-.++-|+++
T Consensus 282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchhhh-hhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 345678888888887743 333455778888888888875 3333 43 6788888888888876 44444456778888
Q ss_pred EeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496 102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG 164 (204)
Q Consensus 102 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 164 (204)
|.++.|.+... +.+..+.+|..||+++|++..... ...++++|-|+++.+.+|.+.+
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde----V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE----VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHH----hcccccccHHHHHhhcCCCccc
Confidence 88888877632 567778888888888888766532 2567778888888888888763
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=9.3e-12 Score=89.67 Aligned_cols=182 Identities=18% Similarity=0.104 Sum_probs=123.5
Q ss_pred cceEEccCCcccc-ccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecC-CccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLHG-EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP-SRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~ 79 (204)
+++|+|++..++. .....++.|.+|+.|.+.++.+.+.....+....+|+.++++.+....+.. .-++.++..|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 6778888877763 344556788999999999999888777778888899999999886432222 23345788899999
Q ss_pred cCCCcCccCCCcc-ccC-CCCCCEEeccCCccc--ccccc-cccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496 80 LELNRFSGTIPSS-ITN-ASKLTLLKLGGNTFS--GLIPD-TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 154 (204)
Q Consensus 80 l~~~~~~~~~~~~-~~~-~~~L~~l~l~~~~~~--~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 154 (204)
+++|......... +.. -.+|+.|+++++.-. ....+ -...+++|.+||+++|...... ...++-.++.|++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~----~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFKFNYLQH 342 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch----HHHHHHhcchhee
Confidence 9999876432221 122 256788888887432 11112 2356899999999998654432 2255667888999
Q ss_pred EEeeCCc-CCCCCCccccccccCccEEEeeccccc
Q 047496 155 LNLIGNP-LDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 155 l~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
+.++.|. +..+..-.+...+ +|.+|++.++--.
T Consensus 343 lSlsRCY~i~p~~~~~l~s~p-sl~yLdv~g~vsd 376 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKP-SLVYLDVFGCVSD 376 (419)
T ss_pred eehhhhcCCChHHeeeeccCc-ceEEEEeccccCc
Confidence 9998886 3323333445555 8999998887433
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.2e-09 Score=77.66 Aligned_cols=159 Identities=20% Similarity=0.227 Sum_probs=93.9
Q ss_pred cceEEccCCccc--cccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
++.++|.+|.++ ..+...+..||.|+.|+++.|.+...+-..-....+|+.|.+.++.+.+.........+|+++++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 466888888776 355556678889999999988877543322245668888888888877665555555778888887
Q ss_pred cCCCcCccC--CCccccC---------------------------CCCCCEEeccCCccccc-ccccccCCCCCcEEEcc
Q 047496 80 LELNRFSGT--IPSSITN---------------------------ASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLA 129 (204)
Q Consensus 80 l~~~~~~~~--~~~~~~~---------------------------~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~ 129 (204)
++.|..... ....... ++++..+-+..|.+... ....+...+.+..|.++
T Consensus 153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~ 232 (418)
T KOG2982|consen 153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG 232 (418)
T ss_pred hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence 777743210 0011111 13333333444433211 11233444555556666
Q ss_pred CccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496 130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG 164 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 164 (204)
.+++.+.. ..+++.+.+.|..+.++.+.+.+
T Consensus 233 ~~~idswa----svD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 233 ANNIDSWA----SVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccccccHH----HHHHHcCCchhheeeccCCcccc
Confidence 66665442 23566667777777777777654
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.69 E-value=4.8e-08 Score=66.92 Aligned_cols=128 Identities=26% Similarity=0.320 Sum_probs=89.1
Q ss_pred ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEc
Q 047496 49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128 (204)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l 128 (204)
.-+.+++++.++. ....+.....+...+|+.+|.+. . ...+..++.|++|.+++|.++.+.|..-..+++|..|.+
T Consensus 20 ~e~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccc--chhhccccccccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 3456667776653 22223334566778888888774 2 345778888888888888888776665556778888888
Q ss_pred cCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCC---CccccccccCccEEEeecc
Q 047496 129 AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL---PSSIGNLSMSLETLLITNC 185 (204)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~~L~~L~l~~n 185 (204)
.+|.+..+.. .+.+..||+|++|.+-+|.++..- ...+..++ +|+.||++.-
T Consensus 96 tnNsi~~l~d----l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp-~l~~LDF~kV 150 (233)
T KOG1644|consen 96 TNNSIQELGD----LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP-SLRTLDFQKV 150 (233)
T ss_pred cCcchhhhhh----cchhccCCccceeeecCCchhcccCceeEEEEecC-cceEeehhhh
Confidence 8888876642 256777888888888888876432 23455666 8888887754
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.1e-09 Score=82.97 Aligned_cols=109 Identities=28% Similarity=0.368 Sum_probs=56.3
Q ss_pred ccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL 99 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 99 (204)
+..+.+++.+++.+|.+...... +..+++|+.|++++|.++ .+.. +. .++.|+.|++.+|.+. .. ..+..+++|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~-~i~~-l~-~l~~L~~L~l~~N~i~-~~-~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKIT-KLEG-LS-TLTLLKELNLSGNLIS-DI-SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheeccccccc-cccc-hh-hccchhhheeccCcch-hc-cCCccchhh
Confidence 44556666666666666543221 344566666666666654 2221 11 3444666666666664 22 223445566
Q ss_pred CEEeccCCccccccc-ccccCCCCCcEEEccCccCCC
Q 047496 100 TLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNNLTS 135 (204)
Q Consensus 100 ~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 135 (204)
+.+++++|.+...-+ . ...+..++.+++.+|.+..
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 666666665553322 1 3455555555555554443
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.66 E-value=2.9e-09 Score=87.16 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=87.5
Q ss_pred CCCcEEEccCcccc-ccCCcccc-CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496 24 RNLEALALGMNNLV-GVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101 (204)
Q Consensus 24 ~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 101 (204)
.+|++|++++...- ...+..++ -+|.|+.|.+++-.+...--..++.++|+|..||++++.++ .+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 46777777775322 11222222 47788888887766543322344557788888888888776 33 55777788888
Q ss_pred EeccCCcccc-cccccccCCCCCcEEEccCccCCCCcccc-hhhhccccCCCccEEEeeCCcCCCCCCccc
Q 047496 102 LKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLTSSTSKL-SFLSSLANCKKLRSLNLIGNPLDGFLPSSI 170 (204)
Q Consensus 102 l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 170 (204)
|.+.+-.+.. ..-..+-.+++|+.||+|.......+... ...+.-..+|+|+.||.+++.++++..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 8777766542 12234667788888888776544433110 122334457788888888877765444433
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-08 Score=85.93 Aligned_cols=84 Identities=26% Similarity=0.361 Sum_probs=39.8
Q ss_pred ccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL 99 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 99 (204)
|..|+.|+.||+++|.--+..|..++.+-+|++|+++++.+. .+|.++. .+.+|.+|++..+......+.....+.+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccc
Confidence 344555555555554443444444445555555555555544 4454444 44455555554444332333333444555
Q ss_pred CEEecc
Q 047496 100 TLLKLG 105 (204)
Q Consensus 100 ~~l~l~ 105 (204)
++|.+.
T Consensus 645 r~L~l~ 650 (889)
T KOG4658|consen 645 RVLRLP 650 (889)
T ss_pred cEEEee
Confidence 555443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.56 E-value=1.6e-08 Score=72.36 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=72.8
Q ss_pred cCCCccceeeecCCcceeecCCcc---CCCCCCccEEEcCCCcCccCCCcc-------------ccCCCCCCEEeccCCc
Q 047496 45 FNMSTLKIIILINNSLFGSLPSRI---GLSLPTVEHLNLELNRFSGTIPSS-------------ITNASKLTLLKLGGNT 108 (204)
Q Consensus 45 ~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~l~l~~~~ 108 (204)
..+|+|++.+++.|-+....|+.+ .++...|++|.+++|++....-.. ...-+.|+.+.++.|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 355666666666665443333221 124455666666666654221111 1223456666666665
Q ss_pred ccccc----cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCC----CccccccccCccEE
Q 047496 109 FSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL----PSSIGNLSMSLETL 180 (204)
Q Consensus 109 ~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~~~L~~L 180 (204)
+..-. ...+..-.+|+.+.+..|.+......+.....+..+.+|+.||+++|-++-.. ..+++.++ .|+.|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL 247 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLREL 247 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhc
Confidence 54111 11222234566666666666544332223334455666677777776664322 22334444 56666
Q ss_pred Eeeccccccccchh
Q 047496 181 LITNCSISGNIPQA 194 (204)
Q Consensus 181 ~l~~n~~~~~~~~~ 194 (204)
.+.+|-++....++
T Consensus 248 ~lnDClls~~G~~~ 261 (388)
T COG5238 248 RLNDCLLSNEGVKS 261 (388)
T ss_pred cccchhhccccHHH
Confidence 66666655544433
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=6.8e-09 Score=81.05 Aligned_cols=169 Identities=28% Similarity=0.419 Sum_probs=93.9
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++.|++.+|.+. .+...+..+++|++|++++|.|+...+ +..++.|+.|++++|.+. .+.. +. .++.|+.++++
T Consensus 97 l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~~-~l~~L~~l~l~ 170 (414)
T KOG0531|consen 97 LEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-LE-SLKSLKLLDLS 170 (414)
T ss_pred eeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-Cc-cchhhhcccCC
Confidence 456666666665 222225566777777777777765432 334555777777777765 3222 21 36667777777
Q ss_pred CCcCccCCCcc-ccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC--CccEEEee
Q 047496 82 LNRFSGTIPSS-ITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK--KLRSLNLI 158 (204)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~L~~l~l~ 158 (204)
+|.+.. .... ...+.+++.+.++++.+... ..+..+..+..+++..|.+..+. .+.... +|+.++++
T Consensus 171 ~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-------~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 171 YNRIVD-IENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-------GLNELVMLHLRELYLS 240 (414)
T ss_pred cchhhh-hhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-------CcccchhHHHHHHhcc
Confidence 777652 2221 35666667777777665522 23333444444466666555442 122222 26777777
Q ss_pred CCcCCCCCCccccccccCccEEEeeccccc
Q 047496 159 GNPLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 159 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
+|.+.. .+..+..+. .+..+++.+|.+.
T Consensus 241 ~n~i~~-~~~~~~~~~-~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 241 GNRISR-SPEGLENLK-NLPVLDLSSNRIS 268 (414)
T ss_pred cCcccc-ccccccccc-cccccchhhcccc
Confidence 777662 223344444 6667777776655
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1.5e-08 Score=81.47 Aligned_cols=84 Identities=35% Similarity=0.436 Sum_probs=40.0
Q ss_pred cCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccccc
Q 047496 94 TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL 173 (204)
Q Consensus 94 ~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 173 (204)
.-++.++.|+++.|.++.. ..+..++.|++||+++|.+..+|. ....+| +|..|.+.+|.++. ...+.++
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~-----l~~~gc-~L~~L~lrnN~l~t--L~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ-----LSMVGC-KLQLLNLRNNALTT--LRGIENL 253 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc-----cchhhh-hheeeeecccHHHh--hhhHHhh
Confidence 3334455555555555432 245555555555555555554442 111122 25555555555441 1233444
Q ss_pred ccCccEEEeeccccc
Q 047496 174 SMSLETLLITNCSIS 188 (204)
Q Consensus 174 ~~~L~~L~l~~n~~~ 188 (204)
. +|+.||+++|-+.
T Consensus 254 k-sL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 254 K-SLYGLDLSYNLLS 267 (1096)
T ss_pred h-hhhccchhHhhhh
Confidence 4 5666666666554
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=2e-07 Score=78.48 Aligned_cols=163 Identities=30% Similarity=0.392 Sum_probs=112.4
Q ss_pred CCCCCcEEEccCcc--ccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496 22 NLRNLEALALGMNN--LVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL 99 (204)
Q Consensus 22 ~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 99 (204)
.++.|+.|-+..|. +.......|..++.|++||+++|.-.+++|..+. .+-+|++|++.++.+. .+|..+..++.|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 34578888888885 4545555577899999999998776568888887 7889999999999998 889999999999
Q ss_pred CEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC-----------------
Q 047496 100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL----------------- 162 (204)
Q Consensus 100 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~----------------- 162 (204)
.+|++..+......+.....+.+|+.|.+......... .....+..+.+|+.+.+.....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~---~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK---LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccch---hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 99999887765555666667888999888665422111 1223344444444444432221
Q ss_pred --------CCCCCccccccccCccEEEeeccccccc
Q 047496 163 --------DGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 163 --------~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
....+..+..+. +|+.|.+.++.+...
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~-~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLG-NLEELSILDCGISEI 732 (889)
T ss_pred hhhhcccccceeeccccccc-CcceEEEEcCCCchh
Confidence 011233344555 788888888887643
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=9.3e-09 Score=66.20 Aligned_cols=111 Identities=24% Similarity=0.291 Sum_probs=72.9
Q ss_pred CCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEE
Q 047496 25 NLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLL 102 (204)
Q Consensus 25 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 102 (204)
.+..++++.|.+... .+..+.....|...++++|.+. .+|+.+...++.++.+++.+|.+. .+|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 345566666655432 1222334556666777777775 667766666667777777777776 667777777777777
Q ss_pred eccCCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496 103 KLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138 (204)
Q Consensus 103 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 138 (204)
++..|.+. ..|..+..+.++..|+..+|.+..++.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcH
Confidence 77777776 456666667777777777777666653
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.4e-09 Score=77.50 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=79.2
Q ss_pred CcEEEccCcccccc-CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc-CccC-CCccccCCCCCCEE
Q 047496 26 LEALALGMNNLVGV-VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR-FSGT-IPSSITNASKLTLL 102 (204)
Q Consensus 26 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~l 102 (204)
++++|++...++.. ....+..+.+|+.|.+.+..+.+.+...+. .-..|+.++++.+. ++.. ....+..++.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 55555555555432 222334455566666666655544444443 44556666665543 3211 11223455666666
Q ss_pred eccCCccccccc-ccccC-CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc-CCCCCCccccccccCccE
Q 047496 103 KLGGNTFSGLIP-DTIGN-LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP-LDGFLPSSIGNLSMSLET 179 (204)
Q Consensus 103 ~l~~~~~~~~~~-~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~ 179 (204)
++++|....... ..+.+ -++|..|+++++.-.-... .+....+.+|.+.+||+++|. ++.....+|.+++ .|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQH 342 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hhee
Confidence 666665432111 11222 1455566666553211100 111234567788888888875 4544455666776 7888
Q ss_pred EEeecc
Q 047496 180 LLITNC 185 (204)
Q Consensus 180 L~l~~n 185 (204)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 888777
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=5.6e-09 Score=83.83 Aligned_cols=126 Identities=30% Similarity=0.444 Sum_probs=83.8
Q ss_pred CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc-cCCCCCCEEec
Q 047496 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKL 104 (204)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l 104 (204)
|...++++|.+. .+...+.-++.++.|++++|+++ ++. .+. .+++|++||+++|.+. .+|.-- ..++ |+.|.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhhh-heeeee
Confidence 444444444444 22233444678888899988886 433 444 7888999999988887 555422 2333 888888
Q ss_pred cCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 105 GGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
.+|.++.. ..+.++.+|+.||+++|-+.+... +..+..+..|+.|.+.||.+.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hse----L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE----LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchh----hhHHHHHHHHHHHhhcCCccc
Confidence 88887733 557788888889998886655531 133445667888888888874
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=1e-06 Score=45.85 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=19.6
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCcccc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLV 37 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 37 (204)
+|++|++++|++. .+|+.++.|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3556666666655 44445556666666666666555
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=4.4e-07 Score=65.23 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=120.0
Q ss_pred ccCCCCCcEEEccCccccccCCcccc----CCCccceeeecCCcce---eecC-------CccCCCCCCccEEEcCCCcC
Q 047496 20 IANLRNLEALALGMNNLVGVVSAPIF----NMSTLKIIILINNSLF---GSLP-------SRIGLSLPTVEHLNLELNRF 85 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~---~~~~-------~~~~~~~~~L~~L~l~~~~~ 85 (204)
+..+..+..+++++|-|.......++ +-.+|++.+++..... ++++ +.+. .||+|+.+++++|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeecccccc
Confidence 34578899999999998876554443 4567888887765332 1222 2333 789999999999999
Q ss_pred ccCCCccc----cCCCCCCEEeccCCcccccc----ccc---------ccCCCCCcEEEccCccCCCCcccchhhhcccc
Q 047496 86 SGTIPSSI----TNASKLTLLKLGGNTFSGLI----PDT---------IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLAN 148 (204)
Q Consensus 86 ~~~~~~~~----~~~~~L~~l~l~~~~~~~~~----~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 148 (204)
....++.+ ++-+.|.+|.+++|.+.... ..+ ...-|.|+......|++...+... +...+..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~-~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL-SAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH-HHHHHHh
Confidence 87766554 56688999999999875322 111 224578999999999987765421 3334455
Q ss_pred CCCccEEEeeCCcCCCCCCcc--ccc--cccCccEEEeeccccccccchhhhh
Q 047496 149 CKKLRSLNLIGNPLDGFLPSS--IGN--LSMSLETLLITNCSISGNIPQAIST 197 (204)
Q Consensus 149 ~~~L~~l~l~~n~~~~~~~~~--~~~--~~~~L~~L~l~~n~~~~~~~~~~~~ 197 (204)
...|+++.+..|.|--+.... +-+ ...+|+.||+++|.++-.....++.
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 568999999999886331111 111 1238999999999998665555544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=8.4e-07 Score=46.14 Aligned_cols=36 Identities=42% Similarity=0.578 Sum_probs=17.0
Q ss_pred CCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
+|+.|++++|++.+++ ..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~------~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP------PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHG------GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccC------chHhCCCCCCEEEecCCCCC
Confidence 4555555555555443 22445555555555555544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=4.2e-07 Score=74.79 Aligned_cols=141 Identities=24% Similarity=0.318 Sum_probs=101.4
Q ss_pred CccceeeecCCcce-eecCCccCCCCCCccEEEcCCCcCc-cCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496 48 STLKIIILINNSLF-GSLPSRIGLSLPTVEHLNLELNRFS-GTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW 125 (204)
Q Consensus 48 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 125 (204)
.+|+.|++++.... ...+..++.-+|.|+.|.+.+-.+. .+.......+++|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 58999999886532 2345556667899999999987654 22334456789999999999999844 77899999999
Q ss_pred EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCC--Cccc----cccccCccEEEeeccccccccchhh
Q 047496 126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL--PSSI----GNLSMSLETLLITNCSISGNIPQAI 195 (204)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~ 195 (204)
|.+.+=.+.... ....+-++++|+.||+|..+..... ...+ ..++ +|+.||.++..+....-+.+
T Consensus 200 L~mrnLe~e~~~----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 200 LSMRNLEFESYQ----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HhccCCCCCchh----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHHHH
Confidence 988886665533 2246677999999999998865322 1111 1244 99999999988776544443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.18 E-value=1.6e-05 Score=51.72 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=54.6
Q ss_pred hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496 19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK 98 (204)
Q Consensus 19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (204)
.|..+.+|+.+.+.. .+.......|..+.+|+.+.+.++ +. .++...+..++.++.+.+.. .+.......+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 355666777777764 455555566666767777777664 33 55666665666677777755 332123345556677
Q ss_pred CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCc
Q 047496 99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKL 152 (204)
Q Consensus 99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 152 (204)
++.+.+..+ +.......+... .++.+.+.. .+..++. .++.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-----~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-----NAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---------GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-----ccccccccC
Confidence 777777554 443444456665 677776654 3333432 355555554
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=7.7e-08 Score=62.05 Aligned_cols=105 Identities=21% Similarity=0.280 Sum_probs=84.3
Q ss_pred eEEccCCccccccCh---hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 4 GIYLGYNKLHGEIPH---EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 4 ~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
.++|+.|++- .+++ .+.....|+.+++++|.+..+.+..-...+.++++++.+|.+. .+|..+. .++.|+.+++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhhccc
Confidence 4677788664 3333 3556788999999999999665554445679999999999998 8999866 8999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCccccc
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGL 112 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 112 (204)
..|.+. ..|+.+..+.++..|+..++.....
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 999998 7788888899999999888876633
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.10 E-value=1.4e-05 Score=51.94 Aligned_cols=125 Identities=16% Similarity=0.238 Sum_probs=39.5
Q ss_pred CccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhc
Q 047496 66 SRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSS 145 (204)
Q Consensus 66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 145 (204)
+..+..+.+|+.+.+.. .+.......|..+.+++.+.+..+ +.......+..+..++.+.+.. .+..++. .+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-----~~ 76 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-----NA 76 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-----TT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-----cc
Confidence 33333444444444443 222222333444444555555442 3323333444554555555543 2222221 24
Q ss_pred cccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 146 LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 146 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+..++.++.+++..+ +. .+........ +++.+.+.. .++.....+|.+++.||
T Consensus 77 F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 444555555555443 22 1122222223 455555544 33334455666665553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=0.00012 Score=56.55 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496 22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN 83 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 83 (204)
.+.+++.|++++|.++.. |. + ..+|+.|.+++|.-...+|..+ .+.|+.|.+.+|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 356666666666655533 21 1 1246666666544332444322 235666666665
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1.7e-05 Score=54.70 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=66.4
Q ss_pred CCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccC-CCccccCCCCCCEE
Q 047496 24 RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGT-IPSSITNASKLTLL 102 (204)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l 102 (204)
.+...+|++.|.+... ..|..++.|..|.+.+|.++ .+.+.+...+++|..|.+.+|++..- -...+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4566777777766532 23556777777777777776 56666655667777777777777521 12335666777777
Q ss_pred eccCCcccccc---cccccCCCCCcEEEccCc
Q 047496 103 KLGGNTFSGLI---PDTIGNLRNLEWLGLAYN 131 (204)
Q Consensus 103 ~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 131 (204)
.+-+|.++..- ...+..+++|+.||...-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777665321 123556777777776553
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=9.6e-07 Score=64.32 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCcc-CCCccccCCCC
Q 047496 22 NLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSG-TIPSSITNASK 98 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 98 (204)
.+..++.+++.+|.+... ....+.++|.|++|+++.|++...+..... ...+|+.+.+.++.+.. .....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456778888888877642 222345678888888888877533222211 45677888877776542 22333455566
Q ss_pred CCEEeccCCccccc----------ccc-------------------cccCCCCCcEEEccCccCCCCcccchhhhccccC
Q 047496 99 LTLLKLGGNTFSGL----------IPD-------------------TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANC 149 (204)
Q Consensus 99 L~~l~l~~~~~~~~----------~~~-------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 149 (204)
+++++++.|++... .+. ....++++..+-+..|.+.+.... +.....
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e----k~se~~ 223 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE----KGSEPF 223 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc----ccCCCC
Confidence 66666666633211 000 001124555555555544433211 233344
Q ss_pred CCccEEEeeCCcCC-CCCCccccccccCccEEEeecccccc
Q 047496 150 KKLRSLNLIGNPLD-GFLPSSIGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 150 ~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~ 189 (204)
|.+.-|+++.+.+. +...+++.+++ .|.-|.+..+++..
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~-~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFP-QLVDLRVSENPLSD 263 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCc-hhheeeccCCcccc
Confidence 55556667766663 23344555666 67777777776654
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=0.00013 Score=56.33 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=74.4
Q ss_pred cCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCC-cccccccccccCCCCC
Q 047496 45 FNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN-TFSGLIPDTIGNLRNL 123 (204)
Q Consensus 45 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~L 123 (204)
..+.+++.|++++|.+. .+|. -.++|+.|.+.+|.-...+|..+ ..+|++|.+++| .+. .+|. .|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 34688999999999876 6772 23469999998865443556544 357999999988 433 3333 35
Q ss_pred cEEEccCcc---CCCCcccchhhhc----------cc-cC-CCccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496 124 EWLGLAYNN---LTSSTSKLSFLSS----------LA-NC-KKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185 (204)
Q Consensus 124 ~~L~l~~~~---~~~~~~~~~~~~~----------~~-~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 185 (204)
+.|++..+. +..+|..+..+.. +. .+ ++|++|++++|... ..|..+ +.+|+.|+++.+
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE 187 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence 555555443 2333332211110 00 11 47888888887755 334332 347888887765
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.48 E-value=3e-05 Score=55.42 Aligned_cols=39 Identities=36% Similarity=0.566 Sum_probs=16.1
Q ss_pred CCCccEEEcCCC--cCccCCCccccCCCCCCEEeccCCccc
Q 047496 72 LPTVEHLNLELN--RFSGTIPSSITNASKLTLLKLGGNTFS 110 (204)
Q Consensus 72 ~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~ 110 (204)
+++|+.|.++.| ++...+......+++|+++.+++|.+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444555555444 222222222223344444444444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=5.9e-05 Score=53.97 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=76.6
Q ss_pred eEEccCCcc-ccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCC--cceeecCCccCCCCCCccEEEc
Q 047496 4 GIYLGYNKL-HGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINN--SLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 4 ~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l 80 (204)
.+.+.+|.. .+.+..-...+..++.+.+.+..++... .+-.+++|++|.++.| ...+.++.-+- .+|+|+++++
T Consensus 22 ~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~l 98 (260)
T KOG2739|consen 22 ELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNL 98 (260)
T ss_pred hhhcchhhhcCCCcccccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhh-hCCceeEEee
Confidence 344444422 2334444456677777777777666432 2445789999999988 44433333333 5699999999
Q ss_pred CCCcCcc-CCCccccCCCCCCEEeccCCcccccc---cccccCCCCCcEEEcc
Q 047496 81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLI---PDTIGNLRNLEWLGLA 129 (204)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~l~~l~~L~~L~l~ 129 (204)
+.|++.. ...+.+..+.+|..|++.+|..+... ...+.-+++|..|+-.
T Consensus 99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 9998862 22234567788888899888766421 1235566777776643
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=3.6e-06 Score=60.83 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=34.4
Q ss_pred CccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccccc-ccccCCCCCcEE
Q 047496 48 STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWL 126 (204)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L 126 (204)
.+.++|+..+|.+. .+. ++..|+.|++|.++-|.++ .+ ..+..|++|++|.+..|.+..... ..+..+++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34445555555443 111 2224555555555555554 22 123444555555554444432211 123444445555
Q ss_pred EccCcc
Q 047496 127 GLAYNN 132 (204)
Q Consensus 127 ~l~~~~ 132 (204)
++..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 544443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.28 E-value=0.0001 Score=32.03 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=14.7
Q ss_pred CccEEEeeccccccccchhhhhh
Q 047496 176 SLETLLITNCSISGNIPQAISTK 198 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~~~~l 198 (204)
+|++|++++|.++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677778887777 666666553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=3.6e-05 Score=55.86 Aligned_cols=102 Identities=28% Similarity=0.217 Sum_probs=80.5
Q ss_pred CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC
Q 047496 71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK 150 (204)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 150 (204)
.+.+.+.|+.++|++... ....+++.|+.|.++-|.++.. ..+..|++|++|++..|.+.++. -+..+.++|
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sld----EL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLD----ELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHH----HHHHHhcCc
Confidence 466788899999988732 3345788899999999998843 56889999999999999998775 236788999
Q ss_pred CccEEEeeCCcCCCCCCcc-----ccccccCccEEE
Q 047496 151 KLRSLNLIGNPLDGFLPSS-----IGNLSMSLETLL 181 (204)
Q Consensus 151 ~L~~l~l~~n~~~~~~~~~-----~~~~~~~L~~L~ 181 (204)
+|+.|.|..|.-.++.+.. ++.++ +|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LP-nLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLP-NLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcc-cchhcc
Confidence 9999999999877665554 34566 888876
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.69 E-value=0.00097 Score=28.88 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=11.8
Q ss_pred CcceEEccCCccccccChhcc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIA 21 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~ 21 (204)
+|++|++++|++. .+|+.|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4566666666666 5555444
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.50 E-value=2.6e-05 Score=59.41 Aligned_cols=83 Identities=18% Similarity=0.060 Sum_probs=48.7
Q ss_pred cceEEccCCccc-cccCh-hccCCCCCcEEEccCcc-ccccCCccc-cCCCccceeeecCCc-ceeecCCccCCCCCCcc
Q 047496 2 LKGIYLGYNKLH-GEIPH-EIANLRNLEALALGMNN-LVGVVSAPI-FNMSTLKIIILINNS-LFGSLPSRIGLSLPTVE 76 (204)
Q Consensus 2 L~~L~l~~~~~~-~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~ 76 (204)
|+.|.+.+|.-. ..... ....++++++|.+.+|. +++.....+ ..++.|+.+++..|. ++...-+.+...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 566777777432 22222 23467888888888774 333222222 246778888887743 33333344555788888
Q ss_pred EEEcCCCc
Q 047496 77 HLNLELNR 84 (204)
Q Consensus 77 ~L~l~~~~ 84 (204)
++++++|.
T Consensus 220 ~lNlSwc~ 227 (483)
T KOG4341|consen 220 YLNLSWCP 227 (483)
T ss_pred HhhhccCc
Confidence 88888775
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00079 Score=46.66 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccc-cCCCccEEEeeCCc-CCCCCCccccccc
Q 047496 97 SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLA-NCKKLRSLNLIGNP-LDGFLPSSIGNLS 174 (204)
Q Consensus 97 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~ 174 (204)
..++.++.+++.+....-+.+..++.++.|.+..|.-.+.-+ ++-+. -.++|+.|++++|. |++.....+..++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 447778888888776666777778888888887775433311 11121 34678888888874 7766666666776
Q ss_pred cCccEEEeecc
Q 047496 175 MSLETLLITNC 185 (204)
Q Consensus 175 ~~L~~L~l~~n 185 (204)
+|+.|.+.+=
T Consensus 177 -nLr~L~l~~l 186 (221)
T KOG3864|consen 177 -NLRRLHLYDL 186 (221)
T ss_pred -hhHHHHhcCc
Confidence 7777766654
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.00013 Score=58.17 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCccceeeecCCc-ceeecCCccCCCCCCccEEEcCCCc-CccC-CCccccCCCCCCEEeccCCc
Q 047496 47 MSTLKIIILINNS-LFGSLPSRIGLSLPTVEHLNLELNR-FSGT-IPSSITNASKLTLLKLGGNT 108 (204)
Q Consensus 47 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~l~l~~~~ 108 (204)
+++|+.++++.+. +++..-..+...+++|+.|.+..|. ++.. +......+++|++|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555554 3222222222234555555544444 2211 11222334455555555443
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.70 E-value=0.0043 Score=47.79 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=80.0
Q ss_pred CCCCCcEEEccCccc-cccCCccc-cCCCccceeeecCCcc-eeecCCccCCCCCCccEEEcCCCcCcc--CCCccccCC
Q 047496 22 NLRNLEALALGMNNL-VGVVSAPI-FNMSTLKIIILINNSL-FGSLPSRIGLSLPTVEHLNLELNRFSG--TIPSSITNA 96 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 96 (204)
.+..|+.+..+++.. +...-..+ .+.++|+++.+.+++- ++.-...+...++.|+.+++..+.... ++...-..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 466778888877643 22222222 2567888888888762 222223344567778888887776432 233333466
Q ss_pred CCCCEEeccCCccc-ccccccc----cCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 97 SKLTLLKLGGNTFS-GLIPDTI----GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 97 ~~L~~l~l~~~~~~-~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+.++.+.++.|... +.....+ ..+..++.+.+.++...... .+.-+..+++|+.+++-++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA----TLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH----HHHHHhhCcccceeeeechh
Confidence 77888888876543 2211112 23556777777777665442 33556677788888877775
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.57 E-value=0.0052 Score=27.11 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=14.0
Q ss_pred CccEEEeeccccccccchhhh
Q 047496 176 SLETLLITNCSISGNIPQAIS 196 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~~~ 196 (204)
+|++|++++|.|++....+++
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHhC
Confidence 678888888888777666654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0018 Score=44.90 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=43.4
Q ss_pred CccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccc-cccccc-CCCCCcEEEccCcc-CCCCcccchhhhccccCC
Q 047496 74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIG-NLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCK 150 (204)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~ 150 (204)
.++.++-+++.+....-+.+..++.++.|.+.+|.--+. ..+.++ -.++|+.|++++|. |++. .+..+..++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHHHHHHhh
Confidence 366666666666555455556666666666666643211 111122 34667777777664 3332 124455556
Q ss_pred CccEEEeeC
Q 047496 151 KLRSLNLIG 159 (204)
Q Consensus 151 ~L~~l~l~~ 159 (204)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666666544
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.98 E-value=0.017 Score=23.20 Aligned_cols=11 Identities=55% Similarity=0.785 Sum_probs=3.6
Q ss_pred ccEEEeeCCcC
Q 047496 152 LRSLNLIGNPL 162 (204)
Q Consensus 152 L~~l~l~~n~~ 162 (204)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.76 E-value=0.011 Score=47.07 Aligned_cols=111 Identities=15% Similarity=0.030 Sum_probs=48.6
Q ss_pred CCCCcEEEccCcccccc--CCccccCCCccceeeecCC-cceeecC---CccCCCCCCccEEEcCCCc-CccCCCcccc-
Q 047496 23 LRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINN-SLFGSLP---SRIGLSLPTVEHLNLELNR-FSGTIPSSIT- 94 (204)
Q Consensus 23 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~- 94 (204)
++.|+.+.+..+.-... ........++|+.|+++++ ......+ ......+++|+.+++.++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566665555522211 1122234556666666552 1110111 1122244556666666555 3322222222
Q ss_pred CCCCCCEEeccCCc-ccccccc-cccCCCCCcEEEccCccC
Q 047496 95 NASKLTLLKLGGNT-FSGLIPD-TIGNLRNLEWLGLAYNNL 133 (204)
Q Consensus 95 ~~~~L~~l~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~ 133 (204)
.+++|++|.+.+|. +++..-. ....++.|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25566666655555 3322222 223455566666665544
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.66 E-value=0.00015 Score=57.62 Aligned_cols=184 Identities=22% Similarity=0.243 Sum_probs=83.3
Q ss_pred ceEEccCCcccccc----ChhccCCCCCcEEEccCccccccCCc----cccCC-CccceeeecCCcceee----cCCccC
Q 047496 3 KGIYLGYNKLHGEI----PHEIANLRNLEALALGMNNLVGVVSA----PIFNM-STLKIIILINNSLFGS----LPSRIG 69 (204)
Q Consensus 3 ~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~~~~ 69 (204)
..+.+.+|.+.... ...+..++.|..|++++|++.+.... .+... +.++.|++..|.+++. +.+.+.
T Consensus 90 ~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~ 169 (478)
T KOG4308|consen 90 LHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLE 169 (478)
T ss_pred HHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHh
Confidence 34455555554322 22334556666666666666533211 11122 4455555555555422 223333
Q ss_pred CCCCCccEEEcCCCcCcc----CCCccc----cCCCCCCEEeccCCccccc----ccccccCCCC-CcEEEccCccCCCC
Q 047496 70 LSLPTVEHLNLELNRFSG----TIPSSI----TNASKLTLLKLGGNTFSGL----IPDTIGNLRN-LEWLGLAYNNLTSS 136 (204)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~ 136 (204)
....++++++..|.+.. ..+..+ ....+++++.+.+|.++.. ....+...+. +.++++..|.+.+.
T Consensus 170 -~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 170 -KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred -cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 24555555555555420 111222 2344556666666655421 1122333333 44466666655433
Q ss_pred cccchhhhccccC-CCccEEEeeCCcCCCCCCccc----cccccCccEEEeecccccc
Q 047496 137 TSKLSFLSSLANC-KKLRSLNLIGNPLDGFLPSSI----GNLSMSLETLLITNCSISG 189 (204)
Q Consensus 137 ~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~ 189 (204)
... ...+.+... ..+++++++.|.+++.....+ .... .++.+.+..|.+..
T Consensus 249 g~~-~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVE-KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTD 304 (478)
T ss_pred HHH-HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCcccc
Confidence 110 112233333 455666666666654433332 2223 56666666665553
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.81 E-value=0.046 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=11.7
Q ss_pred CccEEEeeccccccccchhh
Q 047496 176 SLETLLITNCSISGNIPQAI 195 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~~ 195 (204)
+|++|++++|+++...++.|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 56667777776664433433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.81 E-value=0.046 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=11.7
Q ss_pred CccEEEeeccccccccchhh
Q 047496 176 SLETLLITNCSISGNIPQAI 195 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~~ 195 (204)
+|++|++++|+++...++.|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 56667777776664433433
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.48 E-value=0.073 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=13.0
Q ss_pred CccEEEeeccccccccchhhh
Q 047496 176 SLETLLITNCSISGNIPQAIS 196 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~~~ 196 (204)
+|++|++++|.+......+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHH
Confidence 567777777777655444443
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.93 E-value=0.001 Score=52.95 Aligned_cols=162 Identities=23% Similarity=0.249 Sum_probs=104.8
Q ss_pred cceEEccCCccccccChhcc----CC-CCCcEEEccCccccccC----CccccCCCccceeeecCCcceee----cCCcc
Q 047496 2 LKGIYLGYNKLHGEIPHEIA----NL-RNLEALALGMNNLVGVV----SAPIFNMSTLKIIILINNSLFGS----LPSRI 68 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~ 68 (204)
|..|++++|.+.+.....++ .. +.+++|++..|.++... ...+.....++.++++.|.+... ++..+
T Consensus 117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l 196 (478)
T KOG4308|consen 117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQAL 196 (478)
T ss_pred HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhh
Confidence 56788888887743333222 22 45777888888887653 33345577889999998876411 12222
Q ss_pred C---CCCCCccEEEcCCCcCccCCC----ccccCCCC-CCEEeccCCcccccc----cccccCC-CCCcEEEccCccCCC
Q 047496 69 G---LSLPTVEHLNLELNRFSGTIP----SSITNASK-LTLLKLGGNTFSGLI----PDTIGNL-RNLEWLGLAYNNLTS 135 (204)
Q Consensus 69 ~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~l~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~ 135 (204)
. ....++++|.+.+|.++.... ..+...+. +..+++..|.+.+.. ...+..+ +.++.++++.|.+..
T Consensus 197 ~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 197 ESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred hhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 2 146678999999988763221 22334444 666888888776442 2334445 678899999998877
Q ss_pred CcccchhhhccccCCCccEEEeeCCcCCC
Q 047496 136 STSKLSFLSSLANCKKLRSLNLIGNPLDG 164 (204)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 164 (204)
.... .....+..++.++++.++.|.+.+
T Consensus 277 ~~~~-~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 277 KGVR-DLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchH-HHHHHHhhhHHHHHhhcccCcccc
Confidence 6432 244567778889999999998865
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.63 E-value=0.0041 Score=44.39 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=59.7
Q ss_pred ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc
Q 047496 91 SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI 170 (204)
Q Consensus 91 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 170 (204)
..+...+..+.|+++.+... .....++.+..+..++++.|++...| ..++....++.++.-.|..+ ..|..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~------~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLP------KDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhCh------hhHHHHHHHHHHHhhccchh-hCCccc
Confidence 34556666777777777665 33344666677777788877776665 34555555666666666666 667777
Q ss_pred cccccCccEEEeecccccc
Q 047496 171 GNLSMSLETLLITNCSISG 189 (204)
Q Consensus 171 ~~~~~~L~~L~l~~n~~~~ 189 (204)
...+ ++++++.-.+.++.
T Consensus 108 ~k~~-~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEP-HPKKNEQKKTEFFR 125 (326)
T ss_pred cccC-CcchhhhccCcchH
Confidence 7776 77887777776653
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.23 E-value=0.017 Score=41.34 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC
Q 047496 71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK 150 (204)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 150 (204)
.+.....||++.++.- .+-..++.++.+..++++.+.+. ..|..++....+..+++..|.+...| ...+..+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p------~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQP------KSQKKEP 111 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCC------ccccccC
Confidence 3455555565555544 33444555555555666655554 44555555555556666666665555 4555666
Q ss_pred CccEEEeeCCcCC
Q 047496 151 KLRSLNLIGNPLD 163 (204)
Q Consensus 151 ~L~~l~l~~n~~~ 163 (204)
+++++++.++.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 6666666666543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.94 E-value=1.1 Score=20.08 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=8.2
Q ss_pred CCCcEEEccCcccc
Q 047496 24 RNLEALALGMNNLV 37 (204)
Q Consensus 24 ~~L~~L~l~~~~~~ 37 (204)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 35566666666554
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.23 E-value=1.2 Score=20.02 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=10.2
Q ss_pred CCcEEEccCccCCCCc
Q 047496 122 NLEWLGLAYNNLTSST 137 (204)
Q Consensus 122 ~L~~L~l~~~~~~~~~ 137 (204)
+|+.|++++|+++..|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4666666666666665
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.79 E-value=1.1 Score=36.26 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=6.6
Q ss_pred CCCCcEEEccCc
Q 047496 120 LRNLEWLGLAYN 131 (204)
Q Consensus 120 l~~L~~L~l~~~ 131 (204)
.|+|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 455555555555
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.21 E-value=1.5 Score=19.46 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=5.6
Q ss_pred CccEEEeecc
Q 047496 176 SLETLLITNC 185 (204)
Q Consensus 176 ~L~~L~l~~n 185 (204)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4555555555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.84 E-value=1.3 Score=35.98 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred ceEEccCCcccc--ccChhccCCCCCcEEEccCc--cccccC-CccccCCCccceeeecCCcceeecCC------ccCCC
Q 047496 3 KGIYLGYNKLHG--EIPHEIANLRNLEALALGMN--NLVGVV-SAPIFNMSTLKIIILINNSLFGSLPS------RIGLS 71 (204)
Q Consensus 3 ~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~--~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~ 71 (204)
..++|++|++.. .+.......|.|+.|+|++| .+.... ...+ +...|++|-+.+|++...... .+.+.
T Consensus 221 ~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~ 299 (585)
T KOG3763|consen 221 LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVSAIREL 299 (585)
T ss_pred eeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHHHHHHh
Confidence 456777777652 12222235688888888888 332211 1112 234578888888887644321 22235
Q ss_pred CCCccEEE
Q 047496 72 LPTVEHLN 79 (204)
Q Consensus 72 ~~~L~~L~ 79 (204)
+|+|..||
T Consensus 300 FPKL~~LD 307 (585)
T KOG3763|consen 300 FPKLLRLD 307 (585)
T ss_pred cchheeec
Confidence 67777776
No 89
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=62.60 E-value=2.6 Score=32.11 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccccc---ccCccEEEeeccccccc
Q 047496 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL---SMSLETLLITNCSISGN 190 (204)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~ 190 (204)
+.++...+....-...+....+..++...+..+.+.+.+....+....++..+ .+.|+.|++++|.|++.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~ 270 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGL 270 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccH
Confidence 45666666554333333222344556666666777776666655444333222 13677788888877764
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.76 E-value=25 Score=28.48 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=9.8
Q ss_pred ccceeeecCCcceeecCC
Q 047496 49 TLKIIILINNSLFGSLPS 66 (204)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~ 66 (204)
.+.+++++.+...+.+|.
T Consensus 215 ~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cccccccccCCCCccchh
Confidence 355666666655544443
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.50 E-value=28 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=25.3
Q ss_pred eccCCcccccccccccCCCCCcEEEccCccCC
Q 047496 103 KLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134 (204)
Q Consensus 103 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 134 (204)
++++|.++..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788888666667888889999999988764
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.25 E-value=26 Score=34.84 Aligned_cols=32 Identities=28% Similarity=0.198 Sum_probs=26.0
Q ss_pred EccCCccccccChhccCCCCCcEEEccCcccc
Q 047496 6 YLGYNKLHGEIPHEIANLRNLEALALGMNNLV 37 (204)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 37 (204)
+|++|++...-+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888555667888999999999998765
Done!