Query 047496
Match_columns 204
No_of_seqs 154 out of 2065
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 20:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.7E-29 2E-33 185.6 15.2 191 2-202 103-294 (313)
2 4fcg_A Uncharacterized protein 100.0 2.1E-28 7E-33 183.7 14.7 191 2-202 106-304 (328)
3 1ozn_A Reticulon 4 receptor; N 100.0 7.7E-28 2.6E-32 177.2 17.3 195 1-202 33-228 (285)
4 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-28 3.8E-33 184.0 12.9 198 2-202 52-271 (313)
5 4fcg_A Uncharacterized protein 100.0 5.7E-28 1.9E-32 181.3 14.6 190 1-202 82-280 (328)
6 3rgz_A Protein brassinosteroid 100.0 1.6E-27 5.6E-32 196.7 18.2 129 2-131 420-548 (768)
7 3rgz_A Protein brassinosteroid 100.0 3.5E-27 1.2E-31 194.7 17.6 195 1-202 443-707 (768)
8 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.7E-30 164.6 18.9 181 2-189 39-219 (270)
9 3zyi_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 178.6 16.4 199 1-201 76-292 (452)
10 2o6q_A Variable lymphocyte rec 99.9 1.9E-25 6.5E-30 163.3 19.4 191 2-202 18-208 (270)
11 3zyj_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 176.9 16.2 198 2-201 66-281 (440)
12 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4E-30 164.8 14.9 136 1-137 29-165 (276)
13 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-25 9.1E-30 163.7 16.4 183 1-190 57-240 (285)
14 3v47_A TOLL-like receptor 5B a 99.9 8E-26 2.7E-30 176.4 14.2 84 2-85 81-166 (455)
15 3zyi_A Leucine-rich repeat-con 99.9 2.5E-25 8.4E-30 173.7 16.7 179 1-188 100-303 (452)
16 3zyj_A Leucine-rich repeat-con 99.9 2.4E-25 8.1E-30 173.2 16.4 180 1-188 89-292 (440)
17 2z66_A Variable lymphocyte rec 99.9 5.9E-25 2E-29 163.3 16.8 181 2-189 80-262 (306)
18 2z66_A Variable lymphocyte rec 99.9 1.3E-25 4.5E-30 166.9 13.0 191 2-199 30-247 (306)
19 1xku_A Decorin; proteoglycan, 99.9 6.9E-25 2.4E-29 164.6 16.6 196 1-202 53-266 (330)
20 2id5_A Lingo-1, leucine rich r 99.9 6.2E-25 2.1E-29 172.5 16.8 196 1-202 33-251 (477)
21 2xwt_C Thyrotropin receptor; s 99.9 1.1E-25 3.9E-30 161.6 11.2 192 1-202 32-232 (239)
22 3v47_A TOLL-like receptor 5B a 99.9 3.5E-25 1.2E-29 172.8 14.7 122 75-202 277-398 (455)
23 3t6q_A CD180 antigen; protein- 99.9 7.8E-25 2.7E-29 176.5 17.0 177 19-202 371-550 (606)
24 3m19_A Variable lymphocyte rec 99.9 4E-24 1.4E-28 154.7 19.0 179 2-190 16-194 (251)
25 3rfs_A Internalin B, repeat mo 99.9 5.1E-25 1.7E-29 161.2 14.5 181 1-192 42-222 (272)
26 3rfs_A Internalin B, repeat mo 99.9 4.1E-24 1.4E-28 156.3 19.1 184 1-200 64-247 (272)
27 1p9a_G Platelet glycoprotein I 99.9 2E-24 6.8E-29 159.4 17.4 174 2-188 12-185 (290)
28 2id5_A Lingo-1, leucine rich r 99.9 1.1E-24 3.7E-29 171.1 16.8 195 1-202 57-275 (477)
29 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-24 4.9E-29 163.1 16.0 106 1-110 55-160 (332)
30 3o6n_A APL1; leucine-rich repe 99.9 2.7E-24 9.4E-29 164.8 17.3 109 2-111 71-179 (390)
31 1p9a_G Platelet glycoprotein I 99.9 4.9E-24 1.7E-28 157.3 17.8 177 1-188 32-208 (290)
32 4eco_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 181.3 9.7 194 1-202 82-380 (636)
33 2z80_A TOLL-like receptor 2, v 99.9 1.1E-25 3.8E-30 170.4 8.0 132 2-135 54-188 (353)
34 3oja_B Anopheles plasmodium-re 99.9 3.9E-24 1.3E-28 172.2 17.3 110 1-111 76-185 (597)
35 1wwl_A Monocyte differentiatio 99.9 3.6E-25 1.2E-29 165.0 10.0 190 1-202 96-299 (312)
36 3t6q_A CD180 antigen; protein- 99.9 5.2E-24 1.8E-28 171.6 16.9 199 2-202 280-503 (606)
37 2z62_A TOLL-like receptor 4, v 99.9 6.4E-24 2.2E-28 155.6 15.1 184 1-192 53-241 (276)
38 2z80_A TOLL-like receptor 2, v 99.9 6E-25 2.1E-29 166.4 9.8 173 5-188 36-211 (353)
39 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-24 9.5E-29 173.2 13.6 191 1-199 351-544 (606)
40 3o6n_A APL1; leucine-rich repe 99.9 2.1E-23 7.3E-28 159.9 17.3 134 1-136 46-180 (390)
41 1xku_A Decorin; proteoglycan, 99.9 4.5E-23 1.6E-27 154.7 17.7 190 2-201 123-321 (330)
42 4ecn_A Leucine-rich repeat pro 99.9 1.2E-24 4E-29 180.4 9.6 191 2-200 325-619 (876)
43 2ft3_A Biglycan; proteoglycan, 99.9 3E-23 1E-27 155.8 16.1 190 2-202 125-323 (332)
44 1ziw_A TOLL-like receptor 3; i 99.9 6.1E-23 2.1E-27 167.4 19.1 193 2-201 383-611 (680)
45 3oja_B Anopheles plasmodium-re 99.9 3.7E-23 1.3E-27 166.5 17.3 136 1-137 52-187 (597)
46 4eco_A Uncharacterized protein 99.9 1.8E-24 6.1E-29 175.2 9.7 191 1-202 250-460 (636)
47 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-24 1.6E-28 159.2 10.7 196 1-201 35-264 (317)
48 3oja_A Leucine-rich immune mol 99.9 4.9E-24 1.7E-28 167.7 11.2 188 1-201 35-239 (487)
49 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-23 3.8E-28 169.7 13.3 176 20-202 346-524 (606)
50 1ziw_A TOLL-like receptor 3; i 99.9 7.1E-23 2.4E-27 167.1 18.1 201 1-202 354-587 (680)
51 2o6s_A Variable lymphocyte rec 99.9 2.8E-23 9.6E-28 146.1 13.6 181 3-200 10-190 (208)
52 3m19_A Variable lymphocyte rec 99.9 1.7E-22 5.8E-27 146.1 17.2 159 1-165 36-194 (251)
53 2z63_A TOLL-like receptor 4, v 99.9 3.4E-23 1.2E-27 165.7 14.8 186 1-193 348-536 (570)
54 1h6u_A Internalin H; cell adhe 99.9 1.5E-22 5E-27 150.6 17.1 179 1-202 42-220 (308)
55 1wwl_A Monocyte differentiatio 99.9 1.3E-23 4.4E-28 156.6 9.5 178 1-190 122-311 (312)
56 2z7x_B TOLL-like receptor 1, v 99.9 9.8E-23 3.3E-27 161.5 14.8 106 1-110 22-128 (520)
57 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-23 2.7E-27 170.4 14.5 56 145-201 285-340 (844)
58 2z63_A TOLL-like receptor 4, v 99.9 4E-23 1.4E-27 165.3 11.9 190 2-202 327-521 (570)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-22 6.5E-27 161.3 15.2 107 1-111 53-160 (562)
60 4ecn_A Leucine-rich repeat pro 99.9 2E-23 6.8E-28 173.1 9.8 181 1-191 449-660 (876)
61 4fmz_A Internalin; leucine ric 99.9 5.6E-22 1.9E-26 149.7 15.3 181 2-201 134-335 (347)
62 4glp_A Monocyte differentiatio 99.9 8.7E-23 3E-27 152.0 10.3 191 1-202 92-297 (310)
63 3j0a_A TOLL-like receptor 5; m 99.9 6.3E-22 2.1E-26 165.0 16.1 191 1-197 25-226 (844)
64 3oja_A Leucine-rich immune mol 99.9 1E-22 3.4E-27 160.2 10.5 189 1-202 59-265 (487)
65 4fmz_A Internalin; leucine ric 99.9 2.4E-21 8.1E-26 146.2 17.4 183 1-202 111-314 (347)
66 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.2E-26 144.1 16.7 168 1-189 64-231 (308)
67 1h6t_A Internalin B; cell adhe 99.9 1.7E-21 5.9E-26 143.7 15.8 169 1-190 47-215 (291)
68 2o6s_A Variable lymphocyte rec 99.9 4.6E-22 1.6E-26 139.9 11.8 161 1-174 29-189 (208)
69 2z7x_B TOLL-like receptor 1, v 99.9 7.9E-22 2.7E-26 156.3 14.5 159 21-190 321-483 (520)
70 4glp_A Monocyte differentiatio 99.9 1.8E-22 6.2E-27 150.2 10.1 178 1-190 118-309 (310)
71 2z81_A CD282 antigen, TOLL-lik 99.9 3.9E-22 1.3E-26 159.0 10.7 189 1-195 27-243 (549)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-21 8.9E-26 154.8 14.9 160 21-192 350-514 (562)
73 2z81_A CD282 antigen, TOLL-lik 99.9 2E-21 6.9E-26 154.9 13.6 174 5-188 10-185 (549)
74 2xot_A Amphoterin-induced prot 99.9 2.9E-21 9.9E-26 146.6 13.7 179 3-188 21-202 (361)
75 1o6v_A Internalin A; bacterial 99.9 1.5E-20 5E-25 147.3 17.6 160 22-202 219-378 (466)
76 4g8a_A TOLL-like receptor 4; l 99.9 6.7E-21 2.3E-25 153.9 15.0 142 25-171 53-194 (635)
77 4g8a_A TOLL-like receptor 4; l 99.9 4.9E-21 1.7E-25 154.7 14.2 194 1-199 53-249 (635)
78 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 138.1 11.6 172 1-185 56-236 (239)
79 1m9s_A Internalin B; cell inva 99.9 1.1E-20 3.9E-25 151.7 15.6 170 1-191 44-213 (605)
80 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.8E-27 152.3 4.1 193 2-201 72-274 (336)
81 3cvr_A Invasion plasmid antige 99.9 2.9E-20 9.9E-25 148.1 16.8 173 2-200 82-255 (571)
82 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-22 2.2E-26 147.7 6.8 185 5-201 15-216 (317)
83 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.7E-27 152.3 3.1 193 1-201 94-298 (336)
84 4ezg_A Putative uncharacterize 99.9 1.2E-20 4.1E-25 131.6 12.4 154 21-189 41-195 (197)
85 2v9t_B SLIT homolog 2 protein 99.9 4.9E-20 1.7E-24 130.6 15.7 151 4-163 15-165 (220)
86 1o6v_A Internalin A; bacterial 99.8 2.7E-20 9.1E-25 145.8 15.5 168 1-189 222-389 (466)
87 4ezg_A Putative uncharacterize 99.8 3.5E-20 1.2E-24 129.2 13.6 150 1-164 45-195 (197)
88 3e6j_A Variable lymphocyte rec 99.8 9.4E-20 3.2E-24 130.0 16.0 151 4-164 23-173 (229)
89 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-19 4.1E-24 141.7 17.7 180 2-198 44-256 (457)
90 2v70_A SLIT-2, SLIT homolog 2 99.8 7.5E-20 2.6E-24 129.7 15.1 133 50-188 34-166 (220)
91 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.5E-24 129.0 15.7 154 26-189 13-166 (220)
92 2v70_A SLIT-2, SLIT homolog 2 99.8 7.7E-20 2.6E-24 129.6 14.7 154 3-165 14-168 (220)
93 1xeu_A Internalin C; cellular 99.8 1.8E-20 6E-25 136.4 11.0 166 3-190 22-187 (263)
94 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-19 7.8E-24 140.1 17.6 97 93-202 187-289 (457)
95 3goz_A Leucine-rich repeat-con 99.8 6.1E-22 2.1E-26 150.4 2.8 193 1-194 23-244 (362)
96 4ay9_X Follicle-stimulating ho 99.8 3.6E-20 1.2E-24 140.1 11.7 192 2-202 32-229 (350)
97 3e6j_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 126.6 16.1 158 24-192 19-176 (229)
98 2xot_A Amphoterin-induced prot 99.8 8.4E-20 2.9E-24 138.6 12.6 156 2-163 41-202 (361)
99 2ca6_A RAN GTPase-activating p 99.8 4E-22 1.4E-26 152.6 -0.3 115 73-189 159-288 (386)
100 2ca6_A RAN GTPase-activating p 99.8 4.8E-22 1.6E-26 152.2 -0.3 200 1-202 33-277 (386)
101 1h6t_A Internalin B; cell adhe 99.8 2.3E-19 8E-24 132.3 12.8 162 20-202 42-203 (291)
102 3cvr_A Invasion plasmid antige 99.8 1E-18 3.4E-23 139.2 17.3 167 1-202 60-233 (571)
103 3goz_A Leucine-rich repeat-con 99.8 7.5E-21 2.6E-25 144.4 3.4 187 4-191 2-212 (362)
104 1m9s_A Internalin B; cell inva 99.8 4.3E-19 1.5E-23 142.5 11.3 174 6-202 27-200 (605)
105 3g06_A SSPH2 (leucine-rich rep 99.8 6.8E-18 2.3E-22 135.9 17.7 50 149-200 260-309 (622)
106 3g06_A SSPH2 (leucine-rich rep 99.8 5.4E-18 1.8E-22 136.5 17.0 169 2-202 103-287 (622)
107 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-21 7.3E-26 151.6 -2.6 129 72-202 255-401 (461)
108 1jl5_A Outer protein YOPM; leu 99.8 3.8E-18 1.3E-22 133.1 15.4 172 2-198 217-421 (454)
109 1xeu_A Internalin C; cellular 99.8 3.2E-18 1.1E-22 124.5 13.3 146 1-165 42-187 (263)
110 4ay9_X Follicle-stimulating ho 99.8 1.6E-18 5.6E-23 131.0 11.6 190 3-202 12-205 (350)
111 1dce_A Protein (RAB geranylger 99.8 8.8E-21 3E-25 151.4 -1.9 188 2-202 351-563 (567)
112 1z7x_W Ribonuclease inhibitor; 99.8 9.7E-21 3.3E-25 147.9 -2.5 36 25-60 86-125 (461)
113 4b8c_D Glucose-repressible alc 99.8 8.1E-20 2.8E-24 149.8 2.0 146 41-196 217-362 (727)
114 1jl5_A Outer protein YOPM; leu 99.8 3.1E-17 1.1E-21 127.9 16.5 79 49-136 132-210 (454)
115 2ell_A Acidic leucine-rich nuc 99.8 2.3E-18 7.9E-23 117.0 8.4 135 24-163 24-160 (168)
116 2ell_A Acidic leucine-rich nuc 99.8 3.3E-18 1.1E-22 116.2 8.7 134 1-138 25-164 (168)
117 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.3E-22 115.3 11.5 130 27-165 11-141 (192)
118 3sb4_A Hypothetical leucine ri 99.7 9.2E-18 3.1E-22 125.8 10.9 193 1-203 50-325 (329)
119 2wfh_A SLIT homolog 2 protein 99.7 9.3E-17 3.2E-21 111.5 13.0 127 27-163 13-139 (193)
120 1w8a_A SLIT protein; signaling 99.7 9E-17 3.1E-21 111.5 12.6 130 3-136 11-141 (192)
121 2je0_A Acidic leucine-rich nuc 99.7 8.8E-18 3E-22 111.9 6.8 132 23-159 16-149 (149)
122 2je0_A Acidic leucine-rich nuc 99.7 1.7E-17 5.7E-22 110.5 8.1 129 47-183 16-148 (149)
123 2o6r_A Variable lymphocyte rec 99.7 2.6E-16 8.8E-21 107.7 13.2 130 26-164 9-138 (177)
124 4b8c_D Glucose-repressible alc 99.7 3.9E-17 1.3E-21 134.0 9.4 162 24-198 173-339 (727)
125 2o6r_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 106.2 13.0 131 3-137 10-140 (177)
126 2wfh_A SLIT homolog 2 protein 99.7 1.1E-15 3.8E-20 106.0 13.1 129 3-136 13-141 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.7 2.4E-16 8.1E-21 107.8 8.2 107 74-188 43-153 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-16 1.9E-20 106.0 8.1 136 19-163 14-153 (176)
129 3un9_A NLR family member X1; l 99.6 6.4E-18 2.2E-22 128.5 -5.6 171 24-196 72-260 (372)
130 1ds9_A Outer arm dynein; leuci 99.6 2.3E-18 8E-23 120.0 -8.0 156 20-188 14-185 (198)
131 3un9_A NLR family member X1; l 99.6 1.9E-17 6.5E-22 125.9 -5.9 189 1-190 73-285 (372)
132 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.8E-22 116.6 -6.8 147 44-202 14-177 (198)
133 3g39_A Variable lymphocyte rec 99.6 5.9E-14 2E-18 95.3 11.8 108 49-165 10-117 (170)
134 2r9u_A Variable lymphocyte rec 99.6 8.3E-14 2.8E-18 95.0 12.3 106 50-164 14-119 (174)
135 3sb4_A Hypothetical leucine ri 99.6 2.1E-14 7.1E-19 107.6 9.8 172 1-181 102-327 (329)
136 1dce_A Protein (RAB geranylger 99.5 3.5E-14 1.2E-18 113.5 11.0 160 12-182 397-567 (567)
137 3ogk_B Coronatine-insensitive 99.5 1.9E-15 6.5E-20 121.4 3.7 126 1-129 165-326 (592)
138 3g39_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 94.5 11.3 107 26-136 11-117 (170)
139 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 93.6 11.3 109 26-138 14-122 (174)
140 3ogk_B Coronatine-insensitive 99.5 2.1E-15 7.3E-20 121.1 2.1 131 1-134 139-306 (592)
141 4fdw_A Leucine rich hypothetic 99.5 1.3E-12 4.5E-17 100.2 14.4 170 17-198 173-368 (401)
142 2p1m_B Transport inhibitor res 99.5 9.9E-15 3.4E-19 117.3 2.4 37 148-185 287-324 (594)
143 2p1m_B Transport inhibitor res 99.5 2E-15 6.9E-20 121.3 -1.9 187 1-195 290-526 (594)
144 4fdw_A Leucine rich hypothetic 99.5 2.3E-12 7.7E-17 98.9 14.1 187 2-198 137-345 (401)
145 2ifg_A High affinity nerve gro 99.3 1.6E-11 5.4E-16 92.5 10.1 103 52-163 12-116 (347)
146 2ifg_A High affinity nerve gro 99.3 2.7E-11 9.3E-16 91.2 10.4 103 4-110 12-116 (347)
147 2ra8_A Uncharacterized protein 99.2 4.7E-12 1.6E-16 95.7 3.5 189 2-197 109-329 (362)
148 2ra8_A Uncharacterized protein 99.1 1.8E-11 6.3E-16 92.5 3.0 180 1-186 140-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.9 8.5E-11 2.9E-15 80.8 -0.3 118 71-190 34-166 (185)
150 1io0_A Tropomodulin; LRR prote 98.7 2.1E-09 7.1E-14 73.8 0.8 118 44-163 32-164 (185)
151 4gt6_A Cell surface protein; l 98.7 4.7E-07 1.6E-11 69.3 13.7 56 144-202 305-360 (394)
152 3e4g_A ATP synthase subunit S, 98.7 1E-08 3.4E-13 69.2 3.7 82 98-185 62-149 (176)
153 4fs7_A Uncharacterized protein 98.7 5.7E-07 2E-11 68.8 13.0 174 18-203 156-370 (394)
154 4fs7_A Uncharacterized protein 98.6 4.5E-07 1.5E-11 69.4 11.9 189 2-203 164-392 (394)
155 3e4g_A ATP synthase subunit S, 98.6 1.4E-08 4.8E-13 68.5 1.5 93 16-108 53-150 (176)
156 4gt6_A Cell surface protein; l 98.5 2.1E-06 7.3E-11 65.6 13.4 112 65-186 257-368 (394)
157 4h09_A Hypothetical leucine ri 98.4 4.6E-06 1.6E-10 63.4 12.1 141 47-199 216-356 (379)
158 4h09_A Hypothetical leucine ri 98.4 9.6E-06 3.3E-10 61.6 13.0 143 19-172 212-354 (379)
159 3rw6_A Nuclear RNA export fact 98.4 3.8E-07 1.3E-11 65.8 4.5 41 120-163 169-209 (267)
160 3rw6_A Nuclear RNA export fact 98.3 1.9E-07 6.5E-12 67.4 2.9 81 21-103 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 2E-06 6.7E-11 59.1 0.7 116 71-188 39-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 2.2E-05 7.5E-10 53.9 2.2 118 45-163 38-170 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00067 2.3E-08 43.4 5.5 57 27-86 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.0012 4.2E-08 42.1 5.9 56 101-163 12-68 (130)
165 2lz0_A Uncharacterized protein 84.5 3.7 0.00013 24.4 5.8 43 112-160 11-53 (100)
166 2lz0_A Uncharacterized protein 69.9 15 0.0005 21.8 6.3 14 42-55 14-27 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.7e-29 Score=185.57 Aligned_cols=191 Identities=26% Similarity=0.441 Sum_probs=120.7
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCC-CccEEEc
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLP-TVEHLNL 80 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l 80 (204)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .++ +|++|++
T Consensus 103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L 181 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTI 181 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEEC
T ss_pred CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEEC
Confidence 44555555555545555555555555555555555555555555555555555555555555555554 343 5555555
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+....+..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.+...+ ..+..+++|++|++++|
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG------GGCCCCTTCCEEECCSS
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec------CcccccCCCCEEECcCC
Confidence 55555544555555554 666666666666555666666777777777777665443 23566788888888888
Q ss_pred cCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.+++.+|..+..++ +|++|++++|.+++.+|.. ..++.|+
T Consensus 255 ~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L~ 294 (313)
T 1ogq_A 255 RIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRFD 294 (313)
T ss_dssp CCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGSC
T ss_pred cccCcCChHHhcCc-CCCEEECcCCcccccCCCC-ccccccC
Confidence 88878888888887 8888888888888887775 5555554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.1e-28 Score=183.65 Aligned_cols=191 Identities=24% Similarity=0.298 Sum_probs=135.4
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC--------CCCC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG--------LSLP 73 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------~~~~ 73 (204)
|++|++++|.+. .+|..++.+++|++|++++|.+. ..|..+..+++|++|++++|...+.+|..+. ..++
T Consensus 106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 566666666666 66666666677777777776666 4455566667777777776665556665543 1266
Q ss_pred CccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc
Q 047496 74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR 153 (204)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 153 (204)
+|++|++++|.++ .+|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.... +..+..+++|+
T Consensus 184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-----p~~~~~l~~L~ 256 (328)
T 4fcg_A 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-----PPIFGGRAPLK 256 (328)
T ss_dssp TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-----CCCTTCCCCCC
T ss_pred CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-----HHHhcCCCCCC
Confidence 7777777777776 666667777777777777777774 4556777777777777777665442 24677778888
Q ss_pred EEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 154 ~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|+.+++++.++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCce
Confidence 888888887778888888887 888888888888888888888887765
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.7e-28 Score=177.23 Aligned_cols=195 Identities=24% Similarity=0.232 Sum_probs=168.6
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCc-ceeecCCccCCCCCCccEEE
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-LFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~ 79 (204)
++++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +. .+++..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEE
Confidence 47899999999987666788999999999999999998888889999999999999997 65 56544445899999999
Q ss_pred cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
+.+|.+....+..+..+++|++|++++|.+....+..++.+++|+.|++++|.+..++. ..+..+++|++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-----RAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCS
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-----HHhcCccccCEEECCC
Confidence 99999986667778899999999999999987766778999999999999999887753 4578889999999999
Q ss_pred CcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 160 NPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 160 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|.+++..+..+..++ +|+.|++++|.+++..+..|..++.|+
T Consensus 187 n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp SCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccC
Confidence 999988888888888 999999999999987778888887765
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.1e-28 Score=184.00 Aligned_cols=198 Identities=27% Similarity=0.425 Sum_probs=131.9
Q ss_pred cceEEccCCcccc--ccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496 2 LKGIYLGYNKLHG--EIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL 78 (204)
Q Consensus 2 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 78 (204)
++.|+++++.+.+ .+|..++.+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCCEE
Confidence 4566777776665 5666666677777777764 666666666666666666676666666655555554 56666666
Q ss_pred EcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCC-CCcEEEccCccCCCC-cccc----------------
Q 047496 79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR-NLEWLGLAYNNLTSS-TSKL---------------- 140 (204)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~-~~~~---------------- 140 (204)
++++|.+....|..+..+++|++|++++|.+++..|..+..++ .|+.|++++|.+... +..+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence 6666666655566666666666666666666655555565555 566666666554421 1100
Q ss_pred -hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 141 -SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 141 -~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
..+..+..+++|++|++++|.+++..+. +..++ +|++|++++|.+++.+|..|..++.|+
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT-TCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC-CCCEEECcCCcccCcCChHHhcCcCCC
Confidence 1224567778888888888888755444 66666 899999999999999999999888775
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.7e-28 Score=181.25 Aligned_cols=190 Identities=22% Similarity=0.322 Sum_probs=172.6
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+++.|++++|.+. .+|+.+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+. .+++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEEEC
Confidence 3688999999998 88888999999999999999999 66778899999999999999998 8888877 8999999999
Q ss_pred CCCcCccCCCccccC---------CCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCC
Q 047496 81 ELNRFSGTIPSSITN---------ASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKK 151 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 151 (204)
++|.....+|..+.. +++|++|++++|.++ .+|..++.+++|+.|++++|.+..++ ..+..+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~------~~l~~l~~ 230 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG------PAIHHLPK 230 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCC------GGGGGCTT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCc------hhhccCCC
Confidence 998777677776654 999999999999998 67888999999999999999999876 46888999
Q ss_pred ccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 152 LRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 152 L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..++.++.|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred CCEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCC
Confidence 99999999999989999999998 999999999999999999999998876
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.6e-27 Score=196.68 Aligned_cols=129 Identities=36% Similarity=0.612 Sum_probs=59.8
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|+++
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~ 498 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLS 498 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECC
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEcc
Confidence 44555555555444454455555555555555554444444444444444444444444433443333 34444444444
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN 131 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 131 (204)
+|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 44444344444444444444444444444444444444444444444444
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.5e-27 Score=194.68 Aligned_cols=195 Identities=34% Similarity=0.557 Sum_probs=140.8
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L 521 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKL 521 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEEC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEEC
Confidence 366777777777777777777777777777777777777777777777777777777777666666655 6777777777
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccc-------------------------------------------
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI------------------------------------------- 117 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l------------------------------------------- 117 (204)
.+|.+.+..|..+..+++|++|++++|.+.+..|..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 7777776677777777777777777776654444322
Q ss_pred ---------------------------cCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc
Q 047496 118 ---------------------------GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI 170 (204)
Q Consensus 118 ---------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 170 (204)
+.++.|+.|++++|.++...+ ..++.++.|+.|++++|.+++.+|..+
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-----~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-----KEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-----GGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC-----HHHhccccCCEEeCcCCccCCCCChHH
Confidence 223556777777777764422 567777788888888888888888888
Q ss_pred cccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 171 GNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 171 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
..++ +|+.||+++|.+++.+|..|+.++.|+
T Consensus 677 ~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 677 GDLR-GLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp GGCT-TCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hCCC-CCCEEECCCCcccCcCChHHhCCCCCC
Confidence 8877 788888888888888888888777664
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-25 Score=164.56 Aligned_cols=181 Identities=24% Similarity=0.284 Sum_probs=117.0
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
+++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|++.
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECC
Confidence 566777777666444456666777777777777766655555666677777777777665 4555544466677777777
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..++. ..+..+++|++|++++|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-----GAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-----hHhccCCCcCEEECCCCc
Confidence 776664444556666777777777776665544556667777777777776666643 345666677777777777
Q ss_pred CCCCCCccccccccCccEEEeecccccc
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 189 (204)
+++..+..+..++ +|+.|++++|++..
T Consensus 193 l~~~~~~~~~~l~-~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 193 LKRVPEGAFDSLE-KLKMLQLQENPWDC 219 (270)
T ss_dssp CSCCCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred CCcCCHHHhcccc-CCCEEEecCCCeeC
Confidence 7644444455555 67777777776653
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.4e-26 Score=178.55 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=127.2
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEEC
Confidence 3678888888888777777888888888888888888777777888888888888888876 666665557888888888
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCc-ccccccccccCCCCCcEEEccCccCCCCcccc-----------------hh
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNT-FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-----------------SF 142 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------------~~ 142 (204)
++|.+....+..+..+++|++|+++++. +....+..+..+++|+.|++++|.+..++... ..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence 8887764444455666666666666532 22222234555555555555555554443100 00
Q ss_pred hhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
+..+.++++|++|++++|.+++..+..|..++ +|+.|++++|.+++..++.|..++.|
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCC
Confidence 13455555566666666665555555555555 66666666666665555555555544
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.9e-25 Score=163.26 Aligned_cols=191 Identities=24% Similarity=0.334 Sum_probs=166.6
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
.+.++++++.+. .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++|++.
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 467899998888 5666554 68999999999999888888999999999999999997 7888777689999999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..++. ..+..+++|++|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-----GVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-----hHccCCcccceeEecCCc
Confidence 999985555667899999999999999998877889999999999999999988864 457889999999999999
Q ss_pred CCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+++..+..|..++ +|++|++++|.+++..+..|..++.|+
T Consensus 169 l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 169 LKRVPEGAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp CSCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcEeChhHhccCC-CcCEEECCCCcCCcCCHHHhccccCCC
Confidence 9976666788888 999999999999987777788777765
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=176.92 Aligned_cols=198 Identities=20% Similarity=0.211 Sum_probs=118.6
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.++ .++...+..+++|++|++.
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCC
Confidence 567777777777666667777777777777777777766667777777777777777776 5555544467777777777
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCc-ccccccccccCCCCCcEEEccCccCCCCcccc-----------------hhh
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNT-FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-----------------SFL 143 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------------~~~ 143 (204)
+|.+....+..+..+++|++|+++++. +....+..+..+++|+.|++++|.+..++... ..+
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh
Confidence 777664444455566666666666532 22222234555555555555555555443100 001
Q ss_pred hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
..+.++++|++|++++|.+++..+..|..++ +|+.|++++|.+++..++.|..++.|
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCC
Confidence 3444555555555555555544455555555 56666666666665555555555544
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.2e-25 Score=164.83 Aligned_cols=136 Identities=22% Similarity=0.254 Sum_probs=114.9
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence 3789999999998666668899999999999999999887778889999999999999987 445444448999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCccccc-ccccccCCCCCcEEEccCccCCCCc
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSST 137 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 137 (204)
.+|.+....+..+..+++|++|++++|.+... .|..+..+++|+.|++++|.+...+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 99998855555688899999999999998764 4788999999999999999887764
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.6e-25 Score=163.68 Aligned_cols=183 Identities=22% Similarity=0.236 Sum_probs=159.4
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCcc-ccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-LVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
+|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+. .+++..+..+++|++|+
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEE
Confidence 47899999999997778899999999999999997 88777888999999999999999997 45444444899999999
Q ss_pred cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+ ..+..+++|++|++++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----HAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCS
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-----hHccCcccccEeeCCC
Confidence 99999985555668899999999999999997666679999999999999999987633 5788899999999999
Q ss_pred CcCCCCCCccccccccCccEEEeeccccccc
Q 047496 160 NPLDGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 160 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
|.+++..+..+..++ +|+.|++++|.+...
T Consensus 211 n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 211 NNLSALPTEALAPLR-ALQYLRLNDNPWVCD 240 (285)
T ss_dssp SCCSCCCHHHHTTCT-TCCEEECCSSCEECS
T ss_pred CcCCcCCHHHcccCc-ccCEEeccCCCccCC
Confidence 999976666688887 999999999998754
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8e-26 Score=176.44 Aligned_cols=84 Identities=26% Similarity=0.344 Sum_probs=36.7
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCc--cccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSA--PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
|++|++++|.+.+..|..++.+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..++..+++|++|+
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 44455555554444444444455555555555544432211 1444444444444444444222332222344444444
Q ss_pred cCCCcC
Q 047496 80 LELNRF 85 (204)
Q Consensus 80 l~~~~~ 85 (204)
+++|.+
T Consensus 161 L~~n~l 166 (455)
T 3v47_A 161 LTFNKV 166 (455)
T ss_dssp CTTCCB
T ss_pred CCCCcc
Confidence 444443
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.5e-25 Score=173.70 Aligned_cols=179 Identities=24% Similarity=0.258 Sum_probs=133.2
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCc-------------
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR------------- 67 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------- 67 (204)
+|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+. .++..
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeC
Confidence 3677777777777666666777777777777777777666666666777777777777665 44433
Q ss_pred ------------cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCC
Q 047496 68 ------------IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS 135 (204)
Q Consensus 68 ------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 135 (204)
.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 2334555666666666655 333 36667788888888888887777888889999999999998877
Q ss_pred CcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496 136 STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
.+. ..+.++++|++|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus 257 ~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 257 IER-----NAFDGLASLVELNLAHNNLSSLPHDLFTPLR-YLVELHLHHNPWN 303 (452)
T ss_dssp ECT-----TTTTTCTTCCEEECCSSCCSCCCTTSSTTCT-TCCEEECCSSCEE
T ss_pred ECH-----HHhcCCCCCCEEECCCCcCCccChHHhcccc-CCCEEEccCCCcC
Confidence 643 5788899999999999999976666777787 9999999999886
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=173.24 Aligned_cols=180 Identities=24% Similarity=0.269 Sum_probs=130.1
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcce-------------------
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF------------------- 61 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------- 61 (204)
+|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+.
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 3567777777776555566667777777777777776665555666666666666666654
Q ss_pred -----eecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496 62 -----GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 62 -----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
+.++...+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 2233333334555666666666555 333 356677788888888888777777888888899999988888776
Q ss_pred cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496 137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
+. ..+.++++|++|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus 247 ~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 247 ER-----NAFDNLQSLVEINLAHNNLTLLPHDLFTPLH-HLERIHLHHNPWN 292 (440)
T ss_dssp CT-----TSSTTCTTCCEEECTTSCCCCCCTTTTSSCT-TCCEEECCSSCEE
T ss_pred Ch-----hhhcCCCCCCEEECCCCCCCccChhHhcccc-CCCEEEcCCCCcc
Confidence 53 5788899999999999999977777777887 9999999999886
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.9e-25 Score=163.33 Aligned_cols=181 Identities=20% Similarity=0.250 Sum_probs=118.6
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCC-ccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS-APIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
|++|++++|.+. .++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus 80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEEC
T ss_pred cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEEC
Confidence 455566665555 344456666666777776666665543 456666777777777776653333333 36677777777
Q ss_pred CCCcCcc-CCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
++|.+.. ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...+. ..+..+++|++|++++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-----FPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-----GGGTTCTTCCEEECTT
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-----hhccCcccCCEeECCC
Confidence 7777653 356666777777777777777776656667777777777777777766543 3456677777777777
Q ss_pred CcCCCCCCccccccccCccEEEeecccccc
Q 047496 160 NPLDGFLPSSIGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 160 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 189 (204)
|.+++..+..+..++.+|++|++++|.++.
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 777766666666664467777777777764
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=166.86 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=120.4
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccC--Ccc-----------------------ccCCCccceeeec
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV--SAP-----------------------IFNMSTLKIIILI 56 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~-----------------------~~~l~~L~~L~l~ 56 (204)
+++|++++|.+....+..|..+++|++|++++|.+.... +.. +..+++|++|+++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECC
Confidence 566777777666333334566667777777666655321 222 3445555555555
Q ss_pred CCcceeecCC-ccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccc-cccccccCCCCCcEEEccCccCC
Q 047496 57 NNSLFGSLPS-RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLT 134 (204)
Q Consensus 57 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 134 (204)
+|.+. .++. ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.
T Consensus 110 ~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 110 HSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 55554 2222 223356666666666666654555556666777777777777664 45666777777777777777776
Q ss_pred CCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496 135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY 199 (204)
Q Consensus 135 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 199 (204)
..++ ..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|..+..++
T Consensus 189 ~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 189 QLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp EECT-----TTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBCSSSSCCCCC
T ss_pred CcCH-----HHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCcccCHHHHHhhh
Confidence 5532 4566777788888888887765555666666 788888888888877777776653
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.9e-25 Score=164.62 Aligned_cols=196 Identities=21% Similarity=0.296 Sum_probs=140.3
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++ ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEEC
Confidence 3678999999988666667889999999999999999888888889999999999999886 6776553 67888888
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccc--cccccccCCCCCcEEEccCccCCCCcccc----------------hh
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSG--LIPDTIGNLRNLEWLGLAYNNLTSSTSKL----------------SF 142 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------~~ 142 (204)
.+|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+..++... ..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 208 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence 8887774444556777778888887777643 44556666777777777776665554211 01
Q ss_pred hhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.++ .+|..+..++.|+
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~ 266 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQ 266 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCc-cCChhhccCCCcC
Confidence 13455666777777777777655555666666 6777777777776 5666666665554
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=6.2e-25 Score=172.47 Aligned_cols=196 Identities=23% Similarity=0.264 Sum_probs=145.8
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence 3678899999888777778888999999999999888887888888889999999988886 677666557888999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHL 186 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-----HHHTTCTTCCEEEEESC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-----hHhcccCCCcEEeCCCC
Confidence 8888876667778888888888888888877777778888888888888888777653 34555666666666666
Q ss_pred cCCCCCCccccccc-----------------------cCccEEEeeccccccccchhhhhhhhhc
Q 047496 161 PLDGFLPSSIGNLS-----------------------MSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 161 ~~~~~~~~~~~~~~-----------------------~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.+.+..+..+..++ .+|+.|++++|.+++..+..|..++.|+
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 55544333333332 1566666666777654445677666654
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=1.1e-25 Score=161.63 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=162.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCcc-ccccCCccccCCCccceeeecC-CcceeecCCccCCCCCCccEE
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-LVGVVSAPIFNMSTLKIIILIN-NSLFGSLPSRIGLSLPTVEHL 78 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L 78 (204)
++++|++++|++.+..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+. .+++..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 47899999999996666689999999999999997 8888777899999999999998 8887 6666555589999999
Q ss_pred EcCCCcCccCCCccccCCCCCC---EEeccCC-cccccccccccCCCCCc-EEEccCccCCCCcccchhhhccccCCCcc
Q 047496 79 NLELNRFSGTIPSSITNASKLT---LLKLGGN-TFSGLIPDTIGNLRNLE-WLGLAYNNLTSSTSKLSFLSSLANCKKLR 153 (204)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 153 (204)
++.+|.+. .+|. +..+++|+ ++++++| .++...+..+..+++|+ .+++++|.+..++. ..+.. ++|+
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-----~~~~~-~~L~ 182 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-----YAFNG-TKLD 182 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-----TTTTT-CEEE
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-----hhcCC-CCCC
Confidence 99999998 5665 88888888 9999999 88876667799999999 99999999987764 34444 7899
Q ss_pred EEEeeCCc-CCCCCCcccccc-ccCccEEEeeccccccccchhhhhhhhhc
Q 047496 154 SLNLIGNP-LDGFLPSSIGNL-SMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 154 ~l~l~~n~-~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+|++++|+ +++..+..|..+ + +|+.|++++|.+++..+..|..+..|+
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLEHLKELI 232 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred EEEcCCCCCcccCCHHHhhcccc-CCcEEECCCCccccCChhHhccCceee
Confidence 99999995 886666777777 7 999999999999976666677766553
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.5e-25 Score=172.81 Aligned_cols=122 Identities=21% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496 75 VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 154 (204)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 154 (204)
|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+. ..+..+++|++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~ 351 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS-----RMFENLDKLEV 351 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-----GGGTTCTTCCE
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh-----hHhcCcccCCE
Confidence 3333333333333334445555666666666666665555556666666666666666554422 34555666666
Q ss_pred EEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 155 LNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 155 l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|++++|.+++..+..+..++ +|++|++++|.+++..+..|..++.|+
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp EECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhccCCccc
Confidence 66666666655555565555 666666666666655555555555443
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=7.8e-25 Score=176.46 Aligned_cols=177 Identities=20% Similarity=0.218 Sum_probs=85.4
Q ss_pred hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496 19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK 98 (204)
Q Consensus 19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (204)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 33444444444444444443334444444444444444444433333332224444455555444444333444444555
Q ss_pred CCEEeccCCccccc---ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccccccc
Q 047496 99 LTLLKLGGNTFSGL---IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM 175 (204)
Q Consensus 99 L~~l~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 175 (204)
|++|++++|.+.+. .+..+..+++|+.|++++|.+...++ ..+..+++|++|++++|.+++..+..+..++
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~- 524 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-----HAFTSLKMMNHVDLSHNRLTSSSIEALSHLK- 524 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh-----hhhccccCCCEEECCCCccCcCChhHhCccc-
Confidence 55555555544431 11234445555555555555444321 3455555666666666666555555555555
Q ss_pred CccEEEeeccccccccchhhhhhhhhc
Q 047496 176 SLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+| +|++++|.+++..|+.|..++.|+
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred cc-EEECcCCcccccCHhhcccCCCCC
Confidence 55 666666666655555555555543
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=4e-24 Score=154.68 Aligned_cols=179 Identities=22% Similarity=0.273 Sum_probs=154.2
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
.++++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+. .+++..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECC
Confidence 357888888887 6666555 68999999999999888888999999999999999997 5555555589999999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++. ..+..+++|++|++++|.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----GAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-----HHcCcCcCCCEEECCCCc
Confidence 999985556678899999999999999997766778999999999999999988864 468889999999999999
Q ss_pred CCCCCCccccccccCccEEEeeccccccc
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
+++..+..+..++ +|++|++++|.++..
T Consensus 167 l~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDRLG-KLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTTTTCT-TCCEEECCSCCBCTT
T ss_pred CCccCHHHHhCCC-CCCEEEeeCCceeCC
Confidence 9977777788887 999999999999865
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.1e-25 Score=161.16 Aligned_cols=181 Identities=25% Similarity=0.353 Sum_probs=152.5
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|+.|++.++.+. .+ +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 42 SIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred ceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEEC
Confidence 4788999999876 33 4588899999999999998864 36788999999999999987 666665558999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
.+|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...+. ..+..+++|++|++++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-----GVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-----HHhcCCccCCEEECCCC
Confidence 9999985555667889999999999999987767778899999999999999988764 45788899999999999
Q ss_pred cCCCCCCccccccccCccEEEeeccccccccc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIP 192 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 192 (204)
.+++..+..+..++ +|++|++++|.+.+..|
T Consensus 192 ~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 192 QLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred cCCccCHHHHhCCc-CCCEEEccCCCccccCc
Confidence 99977777778887 99999999998876655
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=4.1e-24 Score=156.33 Aligned_cols=184 Identities=26% Similarity=0.272 Sum_probs=147.1
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+ .+.+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 64 ~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 64 NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEEC
Confidence 47888999988874 246788889999999999888877777888889999999999887 566655557888999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+....+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+...+. ..+..+++|+++++++|
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-----GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSS
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-----HHHhCCcCCCEEEccCC
Confidence 9988874445556788889999999998887766677888899999999998887754 45777888999999998
Q ss_pred cCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 200 (204)
.+.+..+ +++.+++..|.+++.+|.+++.++.
T Consensus 216 ~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 216 PWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccccCc--------HHHHHHHHHHhCCCcccCcccccCC
Confidence 8775433 6788888888888888888776653
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2e-24 Score=159.36 Aligned_cols=174 Identities=24% Similarity=0.286 Sum_probs=82.2
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
+++++++++++. .+|..+. +.++.|++++|.+++..+..|..+++|+.|++++|.++ .++.. ..+++|++|+++
T Consensus 12 l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECC
T ss_pred ccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECC
Confidence 344555555544 3333332 34555555555555444444555555555555555544 22222 144555555555
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+. .++..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...+. ..+..+++|++|++++|.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCc
Confidence 55554 444444445555555555555544433445555555555555555544432 233444455555555555
Q ss_pred CCCCCCccccccccCccEEEeeccccc
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
++...+..+..++ +|++|++++|.++
T Consensus 160 l~~l~~~~~~~l~-~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 160 LTELPAGLLNGLE-NLDTLLLQENSLY 185 (290)
T ss_dssp CSCCCTTTTTTCT-TCCEEECCSSCCC
T ss_pred CCccCHHHhcCcC-CCCEEECCCCcCC
Confidence 5432222333344 4555555555554
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=171.06 Aligned_cols=195 Identities=19% Similarity=0.158 Sum_probs=157.7
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l 135 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEV 135 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEE
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEEC
Confidence 47899999999998888899999999999999999998877778899999999999999984444444 48999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC----------
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK---------- 150 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---------- 150 (204)
.+|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...+. ..+..++
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----TCSCSCTTCCEEEEECC
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----hhcccCcccceeeCCCC
Confidence 9999886667788899999999999998887666678888888888888887765532 2233333
Q ss_pred --------------CccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 151 --------------KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 151 --------------~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+|++|++++|.+++..+..+..++ +|+.|++++|.+++..+..|..++.|+
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQ 275 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred ccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCC
Confidence 566666666666633334566777 999999999999988888888888775
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.4e-24 Score=163.06 Aligned_cols=106 Identities=17% Similarity=0.268 Sum_probs=74.6
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..++ ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEEC
Confidence 3678888888887666667888888888888888888777777888888888888888776 5665543 56666666
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCccc
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFS 110 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 110 (204)
.+|.+....+..+..+++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 666665333334555666666666665553
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-24 Score=164.81 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=71.9
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..++..+++|++|+++
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence 566777777666555556667777777777777776666666666777777777777665 5666554466777777777
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSG 111 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 111 (204)
+|.+....+..+..+++|++|++++|.+++
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 776664445556666667777666665543
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.9e-24 Score=157.27 Aligned_cols=177 Identities=24% Similarity=0.219 Sum_probs=157.3
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|++|++++|.+. .+|..+. .+++|++|++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l 107 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDV 107 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTT-TCTTCCEEEC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhc-cCCCCCEEEC
Confidence 478999999999977788899999999999999999876443 67899999999999997 7787665 8999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|++..++. ..+..+++|++|++++|
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-----TTTTTCTTCCEEECCSS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-----HHhcCcCCCCEEECCCC
Confidence 9999985555779999999999999999997777778999999999999999998874 45788999999999999
Q ss_pred cCCCCCCccccccccCccEEEeeccccc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
.++ .+|..+.... +|+++++++|++.
T Consensus 183 ~l~-~ip~~~~~~~-~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 183 SLY-TIPKGFFGSH-LLPFAFLHGNPWL 208 (290)
T ss_dssp CCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred cCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence 999 7888888887 9999999999886
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.6e-25 Score=181.33 Aligned_cols=194 Identities=23% Similarity=0.340 Sum_probs=153.2
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccc--------------------------------------------
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL-------------------------------------------- 36 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------------------------------- 36 (204)
+++.|+|+++++.+.+|+.++.+++|+.|++++|.+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 357899999999889999999999999999988843
Q ss_pred ----------------------------------cccCCccccCCCccceeeecCCcceee-----------------cC
Q 047496 37 ----------------------------------VGVVSAPIFNMSTLKIIILINNSLFGS-----------------LP 65 (204)
Q Consensus 37 ----------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~ 65 (204)
++ .|..+..+++|++|++++|.+++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 23 456677888999999999988754 77
Q ss_pred CccC-CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCc-ccc-cccccccCC------CCCcEEEccCccCCCC
Q 047496 66 SRIG-LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT-FSG-LIPDTIGNL------RNLEWLGLAYNNLTSS 136 (204)
Q Consensus 66 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~ 136 (204)
+.+. ..+++|++|++.+|.+...+|..+..+++|++|++++|. +++ ..|..++.+ ++|+.|++++|.+..+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 7653 258889999999988887888888889999999999987 877 677777665 8889999999888866
Q ss_pred cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh-hc
Q 047496 137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL-FQ 202 (204)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~-l~ 202 (204)
|.. ..++.+++|++|++++|.+.+.+| .+..++ +|++|++++|.++ .+|..++.++. |+
T Consensus 321 p~~----~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 321 PVE----TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp CCH----HHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred Cch----hhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCc
Confidence 520 157778888888888888887777 777776 7888888888777 66777776665 43
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=170.42 Aligned_cols=132 Identities=25% Similarity=0.303 Sum_probs=79.6
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECC
Confidence 566777777766544446667777777777777776666666666777777777777665 4555433356667777776
Q ss_pred CCcCccCCCc--cccCCCCCCEEeccCC-cccccccccccCCCCCcEEEccCccCCC
Q 047496 82 LNRFSGTIPS--SITNASKLTLLKLGGN-TFSGLIPDTIGNLRNLEWLGLAYNNLTS 135 (204)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 135 (204)
+|.+. .++. .+..+++|++|++++| .+....+..+..+++|+.|++++|.+..
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 66665 3333 4556666666666665 2443334445555555555555554433
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-24 Score=172.16 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=78.5
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+..+..|+.+++|+.|++++|.+++..+..|..+++|++|++++|.+. .+|+.++..+++|++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEe
Confidence 3677777777777666667777777777777777777776666777777777777777776 666665556777777777
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccc
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSG 111 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 111 (204)
++|.+....+..+..+++|++|++++|.+++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 7777765555566777777777777766553
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=3.6e-25 Score=165.02 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=148.4
Q ss_pred CcceEEccCCccccccChhc--cCCCCCcEEEccCccccccCCccccCC-----CccceeeecCCcceeecCCccCCCCC
Q 047496 1 MLKGIYLGYNKLHGEIPHEI--ANLRNLEALALGMNNLVGVVSAPIFNM-----STLKIIILINNSLFGSLPSRIGLSLP 73 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~ 73 (204)
+|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+. .++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~ 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFP 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCC
Confidence 47889999999988888876 8899999999999999877 6666665 8999999999998743334444 899
Q ss_pred CccEEEcCCCcCccC--CCccc--cCCCCCCEEeccCCccccc---ccccccCCCCCcEEEccCccCCCCcccchhhhcc
Q 047496 74 TVEHLNLELNRFSGT--IPSSI--TNASKLTLLKLGGNTFSGL---IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL 146 (204)
Q Consensus 74 ~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 146 (204)
+|++|++++|.+... .+..+ ..+++|++|++++|.+++. ....+..+++|+.|++++|.+...++. ..+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~ 249 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA----PSC 249 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----SCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch----hhh
Confidence 999999999986532 22333 7788999999999988732 223456789999999999998875421 345
Q ss_pred ccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 147 ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 147 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
..+++|++|++++|.++ .+|..+. + +|++|++++|++++. |. +..++.|+
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~-~L~~L~Ls~N~l~~~-p~-~~~l~~L~ 299 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--A-KLSVLDLSYNRLDRN-PS-PDELPQVG 299 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--S-EEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--C-CceEEECCCCCCCCC-hh-HhhCCCCC
Confidence 56789999999999998 7787776 4 899999999999866 66 77777765
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=5.2e-24 Score=171.65 Aligned_cols=199 Identities=23% Similarity=0.270 Sum_probs=110.0
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 280 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp CSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 566666666665 5566666666666666666666655555555566666666666655544554433355666666666
Q ss_pred CCcCccCC--CccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc-------------------
Q 047496 82 LNRFSGTI--PSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL------------------- 140 (204)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------------- 140 (204)
+|.+.... +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 65554222 334455555555555555554444444444455555555544443321100
Q ss_pred -hhhhccccCCCccEEEeeCCcCCCC---CCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 141 -SFLSSLANCKKLRSLNLIGNPLDGF---LPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 141 -~~~~~~~~~~~L~~l~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
..+..+..+++|++|++++|.+++. .+..+..++ +|++|++++|.+++..|.+|..++.|+
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhccccCCC
Confidence 0113455566666666666666541 223455555 677777777777766667776666654
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.4e-24 Score=155.58 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=155.3
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEEC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEEC
Confidence 4789999999998777778999999999999999999888888999999999999999987 555543448999999999
Q ss_pred CCCcCcc-CCCccccCCCCCCEEeccCCcccccccccccCCCCCc----EEEccCccCCCCcccchhhhccccCCCccEE
Q 047496 81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE----WLGLAYNNLTSSTSKLSFLSSLANCKKLRSL 155 (204)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l 155 (204)
++|.+.. .++..+..+++|++|++++|.+++..+..+..+.+++ .+++++|.+..++. ......+|++|
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~------~~~~~~~L~~L 205 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------GAFKEIRLKEL 205 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT------TSSCSCCEEEE
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc------cccCCCcccEE
Confidence 9999974 3588899999999999999999877666776666666 89999999987763 23334589999
Q ss_pred EeeCCcCCCCCCccccccccCccEEEeeccccccccc
Q 047496 156 NLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIP 192 (204)
Q Consensus 156 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 192 (204)
++++|.+++..+..+..++ +|++|++++|+++...|
T Consensus 206 ~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCC-SCCEEECCSSCBCCCTT
T ss_pred ECCCCceeecCHhHhcccc-cccEEEccCCcccccCC
Confidence 9999999966555667777 99999999999987654
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=6e-25 Score=166.41 Aligned_cols=173 Identities=22% Similarity=0.315 Sum_probs=112.5
Q ss_pred EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84 (204)
Q Consensus 5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 84 (204)
.+.+++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|++++|.
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCc
Confidence 445555555 4555443 47777777777777666666777777777777777776 3433333367777777777777
Q ss_pred CccCCCcc-ccCCCCCCEEeccCCccccccc-ccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 85 FSGTIPSS-ITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 85 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
++ .++.. +..+++|++|++++|.+....+ ..+..+++|+.|++++|. +...+. ..+..+++|++|++++|.
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----KDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETT
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-----HHccCCCCCCEEECCCCC
Confidence 76 44433 6677777777777777774333 357777777777777773 444332 356666777777777777
Q ss_pred CCCCCCccccccccCccEEEeeccccc
Q 047496 162 LDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
+.+..+..+..++ +|++|++++|.++
T Consensus 186 l~~~~~~~l~~l~-~L~~L~l~~n~l~ 211 (353)
T 2z80_A 186 LQSYEPKSLKSIQ-NVSHLILHMKQHI 211 (353)
T ss_dssp CCEECTTTTTTCS-EEEEEEEECSCST
T ss_pred cCccCHHHHhccc-cCCeecCCCCccc
Confidence 7666666666655 5666666666554
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2.8e-24 Score=173.25 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=134.8
Q ss_pred CcceEEccCCccccc--cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496 1 MLKGIYLGYNKLHGE--IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL 78 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 78 (204)
+|++|++++|.+.+. .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+...+..+++|++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 366777777776644 366677777777777777777653 35566777778888877777644442334467778888
Q ss_pred EcCCCcCccCCCccccCCCCCCEEeccCCcccc-cccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496 79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157 (204)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 157 (204)
++++|.+....+..+..+++|++|++++|.+.+ ..|..++.+++|+.|++++|.+...++ ..+..+++|++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-----GVFDTLHRLQLLNM 504 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEEC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-----hhhcccccCCEEEC
Confidence 888777776666677777778888888777775 356677777788888888877766532 45677777888888
Q ss_pred eCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496 158 IGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY 199 (204)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 199 (204)
++|.+++..|..+..++ +|++|++++|.++ .+|..+..++
T Consensus 505 s~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSC
T ss_pred CCCcCCCcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhc
Confidence 88877766677777776 7788888888777 4555566654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-23 Score=159.87 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=116.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEEC
Confidence 4688999999988544455789999999999999999888888999999999999999997 555555458999999999
Q ss_pred CCCcCccCCCcc-ccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496 81 ELNRFSGTIPSS-ITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
.+|.+. .++.. +..+++|++|++++|.+.+..+..++.+++|+.|++++|.+...
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 999998 55544 68899999999999999987778899999999999999988765
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=4.5e-23 Score=154.72 Aligned_cols=190 Identities=18% Similarity=0.251 Sum_probs=126.3
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccc--cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG--VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+. ++|++|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELH 198 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEE
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEE
Confidence 4556666665554444456667777777777776643 44555666777777777777765 4555432 6777777
Q ss_pred cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+| ..+..+++|++|++++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp------~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP------GGLADHKYIQVVYLHN 272 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC------TTTTTCSSCCEEECCS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC------hhhccCCCcCEEECCC
Confidence 7777776555666777778888888888777666666777778888888888777665 4566777788888888
Q ss_pred CcCCCCCCcccccc-----ccCccEEEeecccccc--ccchhhhhhhhh
Q 047496 160 NPLDGFLPSSIGNL-----SMSLETLLITNCSISG--NIPQAISTKYLF 201 (204)
Q Consensus 160 n~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~--~~~~~~~~l~~l 201 (204)
|.+++..+..|... ...++.+++++|.+.. ..|..|..++.+
T Consensus 273 N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 88775555555432 1267778888887653 445556555444
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.2e-24 Score=180.36 Aligned_cols=191 Identities=21% Similarity=0.272 Sum_probs=124.2
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEc-cCcccccc-----------------------------------------
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALAL-GMNNLVGV----------------------------------------- 39 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~----------------------------------------- 39 (204)
++.|+|+++++.+.+|+.++.+++|+.|++ ++|.+.+.
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 566778888887777877888888888888 55543222
Q ss_pred -----------------------------------CCccccCCCccceeeecCCccee-----------------ecCCc
Q 047496 40 -----------------------------------VSAPIFNMSTLKIIILINNSLFG-----------------SLPSR 67 (204)
Q Consensus 40 -----------------------------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~ 67 (204)
.|..+..+++|+.|++++|.+++ .+|+.
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 44556677778888888777775 26665
Q ss_pred c-CCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCc-ccc-cccccccCC-------CCCcEEEccCccCCCCc
Q 047496 68 I-GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT-FSG-LIPDTIGNL-------RNLEWLGLAYNNLTSST 137 (204)
Q Consensus 68 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~ 137 (204)
+ +..+++|+.|++.+|.+...+|..+..+++|++|++++|. +++ .+|..++.+ ++|+.|++++|.+..+|
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 5 2357777888887777666777777777777777777776 665 455544433 37777777777766554
Q ss_pred ccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496 138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200 (204)
Q Consensus 138 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 200 (204)
. ...+..+++|++|++++|.++ .+| .+..++ +|+.|++++|.++ .+|..+..++.
T Consensus 565 ~----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 565 A----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp C----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECT
T ss_pred C----hhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccc
Confidence 1 014555666666666666666 555 555555 5666666666665 55555555544
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3e-23 Score=155.84 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=122.4
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccc--cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG--VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+. .+|..+. ++|++|+
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~ 199 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELH 199 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCB
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEE
Confidence 3444444444443333334444555555555544432 233333333 4555555555443 3443332 5677777
Q ss_pred cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+| ..+..+++|++|++++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp------~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP------AGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC------TTGGGCTTCCEEECCS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC------hhhhcCccCCEEECCC
Confidence 7777777555567788888888888888888776667888888888888888887666 4577788888888888
Q ss_pred CcCCCCCCcccccc-----ccCccEEEeeccccc--cccchhhhhhhhhc
Q 047496 160 NPLDGFLPSSIGNL-----SMSLETLLITNCSIS--GNIPQAISTKYLFQ 202 (204)
Q Consensus 160 n~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~--~~~~~~~~~l~~l~ 202 (204)
|.+++..+..|... ...++.+++++|.+. +..|.+|..++.|+
T Consensus 274 N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 88886656555543 236888888888876 56777777776654
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=6.1e-23 Score=167.45 Aligned_cols=193 Identities=21% Similarity=0.203 Sum_probs=113.2
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCC-ccccCCCccceeeecCCcceeecCCccCC----------
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS-APIFNMSTLKIIILINNSLFGSLPSRIGL---------- 70 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------- 70 (204)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. .+++..+.
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchh
Confidence 5677777777776667777777777777777777765433 55666777777777777665 22222222
Q ss_pred ----------------CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccccc--------ccccCCCCCcEE
Q 047496 71 ----------------SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------DTIGNLRNLEWL 126 (204)
Q Consensus 71 ----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------~~l~~l~~L~~L 126 (204)
.+++|+.|++++|.+....+..+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 44455555555555543333344555555555555555543211 124455556666
Q ss_pred EccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhh-hhhhh
Q 047496 127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS-TKYLF 201 (204)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~l 201 (204)
++++|.+..++. ..+.++++|++|++++|.+++..+..|..++ +|+.|++++|.+++..|..|. .++.|
T Consensus 542 ~L~~N~l~~i~~-----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 542 NLESNGFDEIPV-----EVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp ECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred ECCCCCCCCCCH-----HHcccccCcceeECCCCCCCcCCHhHhCCCC-CCCEEECCCCcCCccChhHhccccccc
Confidence 666665555442 3456666777777777777644444455555 677777777777766666555 44443
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.7e-23 Score=166.52 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=117.8
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+++.++++++.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEe
Confidence 3678999999988555556789999999999999999888888999999999999999997 566655558999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCc
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 137 (204)
++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+...+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 999998433444689999999999999999888888999999999999999887653
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.8e-24 Score=175.21 Aligned_cols=191 Identities=17% Similarity=0.223 Sum_probs=149.8
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCcc-ccc-cCCccccCC------CccceeeecCCcceeecCC--ccCC
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-LVG-VVSAPIFNM------STLKIIILINNSLFGSLPS--RIGL 70 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~ 70 (204)
+|++|++++|.+.+.+|..++.+++|++|++++|. +++ ..|..+..+ ++|++|++++|.++ .+|. .+.
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~- 327 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ- 327 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-
Confidence 47899999999988999999999999999999998 887 667666655 89999999999987 7887 666
Q ss_pred CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCC-CcEEEccCccCCCCcccchhhhccccC
Q 047496 71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN-LEWLGLAYNNLTSSTSKLSFLSSLANC 149 (204)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~ 149 (204)
.+++|++|++.+|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.+..+|. .+...
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~------~~~~~ 399 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPN------IFDAK 399 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCS------CCCTT
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccch------hhhhc
Confidence 78899999999998886777 7888888999999998888 66777888888 9999999998886663 33333
Q ss_pred --CCccEEEeeCCcCCCCCCcccc-------ccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 150 --KKLRSLNLIGNPLDGFLPSSIG-------NLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 150 --~~L~~l~l~~n~~~~~~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
++|++|++++|.+.+..|..+. .+. +|++|++++|.+++..+..+..++.|+
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCEEECcCCccCcCCHHHHccCCCCC
Confidence 3788888888888777776666 555 777777777777744334444455443
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4.8e-24 Score=159.24 Aligned_cols=196 Identities=19% Similarity=0.166 Sum_probs=116.3
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCc-------------
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR------------- 67 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------- 67 (204)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++..
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNI 111 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCcc
Confidence 37889999998887666788889999999999998876543 6777888888888877652 2110
Q ss_pred ---cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccc-cCCCCCcEEEccCccCCCCcccc---
Q 047496 68 ---IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI-GNLRNLEWLGLAYNNLTSSTSKL--- 140 (204)
Q Consensus 68 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~--- 140 (204)
....+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+...+...
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~ 191 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT
T ss_pred CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccc
Confidence 01134556666666666654334455666667777777766665444444 24555555555555554432100
Q ss_pred -------------hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc-cccchhhhhhhhh
Q 047496 141 -------------SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS-GNIPQAISTKYLF 201 (204)
Q Consensus 141 -------------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~l 201 (204)
.++..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.++ +..|..+..++.+
T Consensus 192 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred cCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCC-CCCEEEccCCCccCcCHHHHHhccccc
Confidence 00022444555555555555555 3444454444 5555566555555 4455555544443
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.9e-24 Score=167.68 Aligned_cols=188 Identities=21% Similarity=0.173 Sum_probs=129.2
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCc-------------
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR------------- 67 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------- 67 (204)
+|++|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+. .++..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcC
Confidence 37899999999997777889999999999999999887654 778888888888888776 22211
Q ss_pred ---cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccccccccc-CCCCCcEEEccCccCCCCcccchhh
Q 047496 68 ---IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG-NLRNLEWLGLAYNNLTSSTSKLSFL 143 (204)
Q Consensus 68 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~ 143 (204)
....+++|+.|++++|.+....+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+...+.
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----- 186 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----- 186 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-----
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-----
Confidence 011356677777777777655566677777888888888877766666654 57777777777777665532
Q ss_pred hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
...+++|++|++++|.+++ +|..+..++ +|+.|++++|.+++ +|..+..++.|
T Consensus 187 --~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 187 --QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp --CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred --cccCCCCCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCcc-cchhhccCCCC
Confidence 2345666666666666663 333455555 66666666666663 45555544443
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.1e-23 Score=169.75 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=145.8
Q ss_pred ccCCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCC-ccccCC
Q 047496 20 IANLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIP-SSITNA 96 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 96 (204)
+..+++|++|++++|.+++. .+..+..+++|++|++++|.+. .+|..+. .+++|++|++.+|.+....+ ..+..+
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhcc
Confidence 45667777777777777655 2566777888888888888876 5665555 78999999999998875555 578889
Q ss_pred CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccC
Q 047496 97 SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176 (204)
Q Consensus 97 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 176 (204)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.... .+..+..+++|++|++++|.+++..+..+..++ +
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~ 498 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-R 498 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----hHHhhccCCCCCEEECCCCcCCccChhhhcccc-c
Confidence 99999999999998888888999999999999999887621 125688899999999999999988888898988 9
Q ss_pred ccEEEeeccccccccchhhhhhhhhc
Q 047496 177 LETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 177 L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|++|++++|.+++..|..|+.++.|+
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCC
Confidence 99999999999999999999888775
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=7.1e-23 Score=167.06 Aligned_cols=201 Identities=20% Similarity=0.195 Sum_probs=143.3
Q ss_pred CcceEEccCCccccc-cC-hhccC--CCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCcc
Q 047496 1 MLKGIYLGYNKLHGE-IP-HEIAN--LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVE 76 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~-~~-~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 76 (204)
+|++|++++|.+... ++ ..+.. .+.|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|+
T Consensus 354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence 478999999975422 22 23332 368999999999999988888999999999999999998778866666899999
Q ss_pred EEEcCCCcCccCC--------------------------CccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccC
Q 047496 77 HLNLELNRFSGTI--------------------------PSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY 130 (204)
Q Consensus 77 ~L~l~~~~~~~~~--------------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 130 (204)
+|++++|.+.... |..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence 9999999865332 33445556666666666666655555566666677777777
Q ss_pred ccCCCCcccc---hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 131 NNLTSSTSKL---SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|.+..++... .....+.++++|++|++++|.++...+..|..++ +|+.|++++|.+++..+..|..++.|+
T Consensus 514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc-CcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 6665432110 0002356777888888888888743334567777 888888888888877677777776665
No 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.8e-23 Score=146.14 Aligned_cols=181 Identities=21% Similarity=0.186 Sum_probs=150.7
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (204)
+.++.+++.+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 35666666665 455443 468999999999999887777889999999999999997 67777666899999999999
Q ss_pred CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496 83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 162 (204)
|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++. ..+..+++|+++++++|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-----GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-----HHhccCCCccEEEecCCCe
Confidence 99984445557899999999999999997766778999999999999999988764 4578899999999999987
Q ss_pred CCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496 163 DGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200 (204)
Q Consensus 163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 200 (204)
.+.. + +++.|++..|.+++.+|..++.++.
T Consensus 161 ~~~~-------~-~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 DCTC-------P-GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCCT-------T-TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ecCC-------C-CHHHHHHHHHhCCceeeccCccccC
Confidence 7543 3 7899999999999999998887653
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.7e-22 Score=146.12 Aligned_cols=159 Identities=25% Similarity=0.276 Sum_probs=142.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEc
Confidence 3789999999999878888999999999999999999988888999999999999999997 677666668999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...+. ..+..+++|+++++++|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-----GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-----HHHhCCCCCCEEEeeCC
Confidence 9999985445557889999999999999997767789999999999999999998864 46888999999999999
Q ss_pred cCCCC
Q 047496 161 PLDGF 165 (204)
Q Consensus 161 ~~~~~ 165 (204)
.+...
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 99765
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.4e-23 Score=165.68 Aligned_cols=186 Identities=22% Similarity=0.292 Sum_probs=147.2
Q ss_pred CcceEEccCCcccccc--ChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496 1 MLKGIYLGYNKLHGEI--PHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL 78 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 78 (204)
+|++|++++|.+.... +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+...+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 3677788887776432 56677888888888888888766554 77888888888888888754454445578889999
Q ss_pred EcCCCcCccCCCccccCCCCCCEEeccCCccc-ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496 79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157 (204)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 157 (204)
++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+...++ ..+..+++|++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l 501 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNM 501 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEEC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-----hhhhcccCCCEEeC
Confidence 99988887667777888889999999998886 4677888888999999999998876632 56778889999999
Q ss_pred eCCcCCCCCCccccccccCccEEEeeccccccccch
Q 047496 158 IGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQ 193 (204)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 193 (204)
++|.+++..+..+..++ +|+.|++++|++++..|.
T Consensus 502 ~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTTT
T ss_pred CCCcCCCCCHHHhhccc-CCcEEEecCCcccCCCcc
Confidence 99998877777777777 899999999988877663
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.5e-22 Score=150.62 Aligned_cols=179 Identities=22% Similarity=0.339 Sum_probs=115.9
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+. .+++|++|++
T Consensus 42 ~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEEC
T ss_pred CcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCEEEC
Confidence 3677788877776 333 46777788888888887776544 667777778888777765 333 333 6777777777
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+. ..+ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+...+ .+..+++|++|++++|
T Consensus 115 ~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 115 TSTQIT-DVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-------PLANLSKLTTLKADDN 183 (308)
T ss_dssp TTSCCC-CCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred CCCCCC-Cch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-------hhcCCCCCCEEECCCC
Confidence 777776 333 36677777777777777764422 666777777777777766553 2556666777777777
Q ss_pred cCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.+++..+ +..++ +|++|++++|.+++..+ +..++.|+
T Consensus 184 ~l~~~~~--l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~ 220 (308)
T 1h6u_A 184 KISDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLF 220 (308)
T ss_dssp CCCCCGG--GGGCT-TCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred ccCcChh--hcCCC-CCCEEEccCCccCcccc--ccCCCCCC
Confidence 6663222 55555 66777777776664432 55555443
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.3e-23 Score=156.61 Aligned_cols=178 Identities=21% Similarity=0.226 Sum_probs=147.1
Q ss_pred CcceEEccCCccccccChhccCC-----CCCcEEEccCccccccCCccccCCCccceeeecCCcceee--cCCcc-CCCC
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANL-----RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGS--LPSRI-GLSL 72 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~-~~~~ 72 (204)
+|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++..+ +..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 478999999999866 7777776 9999999999999998888899999999999999997644 23333 2478
Q ss_pred CCccEEEcCCCcCcc--CCC-ccccCCCCCCEEeccCCccccccc-ccccCCCCCcEEEccCccCCCCcccchhhhcccc
Q 047496 73 PTVEHLNLELNRFSG--TIP-SSITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLAN 148 (204)
Q Consensus 73 ~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 148 (204)
++|++|++++|.+.. ..+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++.+|. .+.
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~------~~~- 273 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK------GLP- 273 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS------SCC-
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh------hcc-
Confidence 999999999999872 111 233567899999999999987664 456678999999999999997764 333
Q ss_pred CCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccc
Q 047496 149 CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 149 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
++|++|++++|.+++. |. +..++ +|++|++++|++++.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCCC
Confidence 7899999999999955 55 78887 999999999999853
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=9.8e-23 Score=161.54 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=89.9
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+. .+|.. .+++|++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEEC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEec
Confidence 4788999999988666678999999999999999999888888999999999999999987 67766 5889999999
Q ss_pred CCCcCcc-CCCccccCCCCCCEEeccCCccc
Q 047496 81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFS 110 (204)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~ 110 (204)
++|.+.. ..|..+..+++|++|++++|.+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc
Confidence 9998874 35678888888888888877664
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=7.9e-23 Score=170.38 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=27.2
Q ss_pred ccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 145 SLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 145 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
.+..+++|++|++++|.+.+..+..|..++ +|++|++++|.+++..|..|..++.|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCC
Confidence 344445555555555555444444444444 45555555555544444444444433
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=4e-23 Score=165.28 Aligned_cols=190 Identities=22% Similarity=0.243 Sum_probs=153.2
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccC--CccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV--SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
|++|++.+|.+....+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+. .++..+. .+++|++|+
T Consensus 327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~ 402 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLD 402 (570)
T ss_dssp CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEE
T ss_pred cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccccc-ccCCCCEEE
Confidence 34444444444322222 56788888888888877553 556778889999999999887 4555554 789999999
Q ss_pred cCCCcCccCCC-ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCC--CcccchhhhccccCCCccEEE
Q 047496 80 LELNRFSGTIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLN 156 (204)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~L~~l~ 156 (204)
+.+|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .| ..+..+++|++|+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------~~~~~l~~L~~L~ 476 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------DIFTELRNLTFLD 476 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------SCCTTCTTCCEEE
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch------hhhhcccCCCEEE
Confidence 99999875444 467889999999999999988888889999999999999998863 33 5788899999999
Q ss_pred eeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 157 LIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 157 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+++|.+++..|..+..++ +|++|++++|.+++..|..|..++.|+
T Consensus 477 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 999999988888999888 999999999999988888898888775
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.9e-22 Score=161.32 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=89.8
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|.. .+++|++|++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEEC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEEC
Confidence 4788999999988666678889999999999999998888888888999999999999987 77776 5889999999
Q ss_pred CCCcCcc-CCCccccCCCCCCEEeccCCcccc
Q 047496 81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSG 111 (204)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~ 111 (204)
++|.+.. ..|..+..+++|++|++++|.+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9998874 235678888889999888887753
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2e-23 Score=173.07 Aligned_cols=181 Identities=18% Similarity=0.253 Sum_probs=129.5
Q ss_pred CcceEEccCCcccc-----------------ccChhcc--CCCCCcEEEccCccccccCCccccCCCccceeeecCCc-c
Q 047496 1 MLKGIYLGYNKLHG-----------------EIPHEIA--NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-L 60 (204)
Q Consensus 1 ~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~ 60 (204)
+|++|+|++|.+.+ .+|+.++ .+++|+.|++++|.+.+..|..+..+++|+.|++++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 47788888888886 3777776 88888888888888888888888888888888888887 7
Q ss_pred ee-ecCCccC------CCCCCccEEEcCCCcCccCCCc--cccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCc
Q 047496 61 FG-SLPSRIG------LSLPTVEHLNLELNRFSGTIPS--SITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN 131 (204)
Q Consensus 61 ~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 131 (204)
++ .+|..+. ..+++|++|++++|.+. .+|. .+..+++|++|++++|.+. .+| .++.+++|+.|++++|
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 65 5665332 24558888888888887 7777 7778888888888888777 556 6777778888888888
Q ss_pred cCCCCcccchhhhccccCCC-ccEEEeeCCcCCCCCCccccccc-cCccEEEeecccccccc
Q 047496 132 NLTSSTSKLSFLSSLANCKK-LRSLNLIGNPLDGFLPSSIGNLS-MSLETLLITNCSISGNI 191 (204)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~ 191 (204)
.+..+| ..+..+++ |++|++++|.++ .+|..+.... ++|+.|++++|.+++.+
T Consensus 606 ~l~~lp------~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 606 QIEEIP------EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCSCCC------TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred ccccch------HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 777555 34666666 777777777766 5555554433 12555555555554433
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=5.6e-22 Score=149.68 Aligned_cols=181 Identities=23% Similarity=0.375 Sum_probs=98.2
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC------------
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG------------ 69 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------ 69 (204)
|++|++++|...... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +.
T Consensus 134 L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCS
T ss_pred eeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeeccc
Confidence 566777776444222 335666666666666666554332 445556666666666554 2222 11
Q ss_pred ---------CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc
Q 047496 70 ---------LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL 140 (204)
Q Consensus 70 ---------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 140 (204)
..+++|++|++++|.+. ..+. +..+++|++|++++|.++.. ..+..+++|+.|++++|.+...+
T Consensus 209 n~l~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--- 281 (347)
T 4fmz_A 209 NQITDITPVANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--- 281 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---
T ss_pred CCCCCCchhhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh---
Confidence 13455555555555554 2222 45555555555555555532 33555556666666666555442
Q ss_pred hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 141 SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 141 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
.+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..| +..++.|
T Consensus 282 ----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 282 ----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp ----GGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred ----hhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccC--hhhhhcc
Confidence 355566666666666666655555555555 66666666666665444 4444444
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.7e-23 Score=151.98 Aligned_cols=191 Identities=18% Similarity=0.136 Sum_probs=143.9
Q ss_pred CcceEEccCCccccccChhc--cCCCCCcEEEccCccccccCC----ccccCCCccceeeecCCcceeecCCccCCCCCC
Q 047496 1 MLKGIYLGYNKLHGEIPHEI--ANLRNLEALALGMNNLVGVVS----APIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 74 (204)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence 37899999999988888877 889999999999999886544 33456889999999999997 455444448999
Q ss_pred ccEEEcCCCcCccC--C--CccccCCCCCCEEeccCCcccccccc----cccCCCCCcEEEccCccCCCC-cccchhhhc
Q 047496 75 VEHLNLELNRFSGT--I--PSSITNASKLTLLKLGGNTFSGLIPD----TIGNLRNLEWLGLAYNNLTSS-TSKLSFLSS 145 (204)
Q Consensus 75 L~~L~l~~~~~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~ 145 (204)
|++|++++|.+... . +..+..+++|++|++++|.++.. +. .++.+++|+.|++++|.+... |..+ ..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~---~~ 246 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSA---PR 246 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC---SS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhH---Hh
Confidence 99999999986521 1 23346788999999999988732 22 356789999999999999877 4211 22
Q ss_pred cccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 146 LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 146 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+..+++|++|++++|.++ .+|..+. + +|++|++++|.+++. |. +..++.|+
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--A-KLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--S-CCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--C-CCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 222379999999999998 6777764 4 899999999999863 32 44444443
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.3e-22 Score=164.98 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=146.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccc-cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG-VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
++++|++++|.+.+..+..|..+++|+.|++++|...+ ..+..|..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ 103 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELR 103 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CCcccCEee
Confidence 46788899888887778888888999999998885543 3467788888899999998888754455554 888899999
Q ss_pred cCCCcCccCCCcc--ccCCCCCCEEeccCCccccccc-ccccCCCCCcEEEccCccCCCCcccchhhhccccC--CCccE
Q 047496 80 LELNRFSGTIPSS--ITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANC--KKLRS 154 (204)
Q Consensus 80 l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~ 154 (204)
+++|.+....+.. +..+++|++|++++|.+.+..+ ..++.+++|+.|++++|.+..... ..+..+ ++|+.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-----~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-----HELEPLQGKTLSF 178 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-----GGGHHHHHCSSCC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-----HHcccccCCccce
Confidence 9888887545544 7888889999998888876544 468888899999998888876633 344444 78888
Q ss_pred EEeeCCcCCCCCCccccccc-----cCccEEEeeccccccccchhhhh
Q 047496 155 LNLIGNPLDGFLPSSIGNLS-----MSLETLLITNCSISGNIPQAIST 197 (204)
Q Consensus 155 l~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~ 197 (204)
|++++|.+.+..+..+.... .+|+.|++++|.+++..|..+..
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 88888888877776655443 13899999999888777776664
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=160.22 Aligned_cols=189 Identities=20% Similarity=0.178 Sum_probs=150.5
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCc----------------cccCCCccceeeecCCcceeec
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSA----------------PIFNMSTLKIIILINNSLFGSL 64 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~l~~L~~L~l~~~~~~~~~ 64 (204)
+|++|++++|.+.+..+ +..+++|++|++++|.+++..+. ....+++|+.|++++|.+.+..
T Consensus 59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~ 136 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136 (487)
T ss_dssp TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGG
T ss_pred CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCC
Confidence 47888999888875554 77888888888888877653211 0123577888999999887544
Q ss_pred CCccCCCCCCccEEEcCCCcCccCCCcccc-CCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhh
Q 047496 65 PSRIGLSLPTVEHLNLELNRFSGTIPSSIT-NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL 143 (204)
Q Consensus 65 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 143 (204)
|..+. .+++|+.|++++|.+....+..+. .+++|++|++++|.+++. .....+++|+.|++++|.+..++
T Consensus 137 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~------ 207 (487)
T 3oja_A 137 DLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG------ 207 (487)
T ss_dssp GBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC------
T ss_pred chhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCC------
Confidence 55554 789999999999999866676665 789999999999999865 33446999999999999998876
Q ss_pred hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc-cccchhhhhhhhhc
Q 047496 144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS-GNIPQAISTKYLFQ 202 (204)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~l~ 202 (204)
..+..+++|+.|++++|.++ .+|..+..++ +|+.|++++|.+. +.+|..+..++.++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred HhHcCCCCccEEEecCCcCc-ccchhhccCC-CCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 35778899999999999999 4777888887 9999999999998 67778887776654
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2.4e-21 Score=146.25 Aligned_cols=183 Identities=26% Similarity=0.463 Sum_probs=137.2
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.. ++. +..+++|+.|++++|......+. +..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~-~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IA-NLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCSEEEC
T ss_pred cCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hc-cCCCCCEEEc
Confidence 48999999999884 333 88999999999999976544443 888999999999999986 4443 33 7899999999
Q ss_pred CCCcCccCCCc---------------------cccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCccc
Q 047496 81 ELNRFSGTIPS---------------------SITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSK 139 (204)
Q Consensus 81 ~~~~~~~~~~~---------------------~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 139 (204)
.+|.+. ..+. .+..+++|++|++++|.++...+ +..+++|+.|++++|.+...
T Consensus 185 ~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--- 258 (347)
T 4fmz_A 185 NYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--- 258 (347)
T ss_dssp TTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---
T ss_pred cCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---
Confidence 999876 2222 13344556666666666553322 66667777777777766654
Q ss_pred chhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 140 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+.+..+++|++|++++|.+++. ..+..++ +|+.|++++|.+++..|..|+.++.|+
T Consensus 259 ----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 259 ----NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp ----GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred ----hhHhcCCCcCEEEccCCccCCC--hhhcCCC-CCCEEECcCCcCCCcChhHhhccccCC
Confidence 3567788899999999888753 4566776 899999999999988888898888775
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.4e-21 Score=144.06 Aligned_cols=168 Identities=24% Similarity=0.379 Sum_probs=143.8
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+ ++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus 64 ~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l 136 (308)
T 1h6u_A 64 NLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYL 136 (308)
T ss_dssp TCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEEC
T ss_pred CCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEEC
Confidence 47899999999884 444 89999999999999999865 35888999999999999997 4554 44 8999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+. ..+. +..+++|++|++++|.+++.. . +..+++|+.|++++|.+...+ .+..+++|++|++++|
T Consensus 137 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 137 DLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISDIS-------PLASLPNLIEVHLKNN 205 (308)
T ss_dssp CSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCG-------GGGGCTTCCEEECTTS
T ss_pred CCCccC-cCcc-ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCcCh-------hhcCCCCCCEEEccCC
Confidence 999997 4443 889999999999999998643 3 889999999999999998875 3778999999999999
Q ss_pred cCCCCCCccccccccCccEEEeecccccc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 189 (204)
.+++.. .+..++ +|+.|++++|.+++
T Consensus 206 ~l~~~~--~l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 206 QISDVS--PLANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp CCCBCG--GGTTCT-TCCEEEEEEEEEEC
T ss_pred ccCccc--cccCCC-CCCEEEccCCeeec
Confidence 998544 377777 99999999999985
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=1.7e-21 Score=143.73 Aligned_cols=169 Identities=25% Similarity=0.362 Sum_probs=144.7
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus 47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~L 119 (291)
T 1h6t_A 47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LK-DLKKLKSLSL 119 (291)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCCEEEC
T ss_pred cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hc-cCCCCCEEEC
Confidence 47899999998873 33 48899999999999999997655 889999999999999987 4443 54 8999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+. .. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+...+ .+..+++|++|++++|
T Consensus 120 ~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-------~l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 120 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKN 188 (291)
T ss_dssp TTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred CCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-------hhcCCCccCEEECCCC
Confidence 999997 33 5688999999999999999865 67889999999999999998875 2788999999999999
Q ss_pred cCCCCCCccccccccCccEEEeeccccccc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
.+++ ++ .+..++ +|+.|++++|.++..
T Consensus 189 ~i~~-l~-~l~~l~-~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISD-LR-ALAGLK-NLDVLELFSQECLNK 215 (291)
T ss_dssp CCCB-CG-GGTTCT-TCSEEEEEEEEEECC
T ss_pred cCCC-Ch-hhccCC-CCCEEECcCCcccCC
Confidence 9985 33 477887 999999999998754
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.6e-22 Score=139.89 Aligned_cols=161 Identities=22% Similarity=0.266 Sum_probs=140.1
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence 4789999999998666667889999999999999999887777889999999999999997 677666558999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. ..+++|++++++.|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------CTCPGIRYLSEWIN 175 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------------CCTTTTHHHHHHHH
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------------cCCCCHHHHHHHHH
Confidence 999998555556789999999999999999776667899999999999999654 34578999999999
Q ss_pred cCCCCCCccccccc
Q 047496 161 PLDGFLPSSIGNLS 174 (204)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (204)
.+++.+|.+++.+.
T Consensus 176 ~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 176 KHSGVVRNSAGSVA 189 (208)
T ss_dssp HCTTTBBCTTSSBC
T ss_pred hCCceeeccCcccc
Confidence 99999999888776
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=7.9e-22 Score=156.34 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=101.4
Q ss_pred cCCCCCcEEEccCccccccCCccccCCCccceeeecCCccee--ecCCccCCCCCCccEEEcCCCcCccCCCcc-ccCCC
Q 047496 21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFG--SLPSRIGLSLPTVEHLNLELNRFSGTIPSS-ITNAS 97 (204)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 97 (204)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+...++.. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCc
Confidence 456667777777777666566666667777777777776653 2333333 5677777777777766434433 55666
Q ss_pred CCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc-ccccccC
Q 047496 98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS-IGNLSMS 176 (204)
Q Consensus 98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~ 176 (204)
+|++|++++|.+++..+..+. ++|+.|++++|.+..+| ..+..+++|++|++++|.++ .+|.. +..++ +
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~-~ 469 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP------KQVVKLEALQELNVASNQLK-SVPDGIFDRLT-S 469 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC------GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT-T
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc------hhhhcCCCCCEEECCCCcCC-ccCHHHhccCC-c
Confidence 777777777766655544443 56777777777776655 33446777777777777777 34444 55665 7
Q ss_pred ccEEEeeccccccc
Q 047496 177 LETLLITNCSISGN 190 (204)
Q Consensus 177 L~~L~l~~n~~~~~ 190 (204)
|++|++++|+++..
T Consensus 470 L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 470 LQKIWLHTNPWDCS 483 (520)
T ss_dssp CCEEECCSSCBCCC
T ss_pred ccEEECcCCCCccc
Confidence 77777777777654
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=150.24 Aligned_cols=178 Identities=17% Similarity=0.195 Sum_probs=144.5
Q ss_pred CcceEEccCCccccccC----hhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceee--cC-CccCCCCC
Q 047496 1 MLKGIYLGYNKLHGEIP----HEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGS--LP-SRIGLSLP 73 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~~~~~ 73 (204)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ......++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 47899999999986544 3445799999999999999988888899999999999999987632 32 22224789
Q ss_pred CccEEEcCCCcCccCCCc----cccCCCCCCEEeccCCcccccccccccCC---CCCcEEEccCccCCCCcccchhhhcc
Q 047496 74 TVEHLNLELNRFSGTIPS----SITNASKLTLLKLGGNTFSGLIPDTIGNL---RNLEWLGLAYNNLTSSTSKLSFLSSL 146 (204)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~ 146 (204)
+|++|++++|.++ ..+. .+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+..+|. .+
T Consensus 198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~ 270 (310)
T 4glp_A 198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK------GL 270 (310)
T ss_dssp CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS------CC
T ss_pred CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh------hh
Confidence 9999999999986 3333 24677999999999999998777777766 699999999999998764 23
Q ss_pred ccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccc
Q 047496 147 ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 147 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
. ++|++|++++|.+++. |. +..++ +|+.|++++|++++.
T Consensus 271 ~--~~L~~L~Ls~N~l~~~-~~-~~~l~-~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRA-PQ-PDELP-EVDNLTLDGNPFLVP 309 (310)
T ss_dssp C--SCCSCEECCSCCCCSC-CC-TTSCC-CCSCEECSSTTTSCC
T ss_pred c--CCCCEEECCCCcCCCC-ch-hhhCC-CccEEECcCCCCCCC
Confidence 2 7999999999999953 33 55666 999999999999753
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.9e-22 Score=158.99 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=132.0
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEEC
Confidence 3788999999888777778888999999999999888887788888899999999999887 455543337888999999
Q ss_pred CCCcCcc-CCCccccCCCCCCEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccc-----------
Q 047496 81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLA----------- 147 (204)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----------- 147 (204)
++|.+.. ..+..+..+++|++|++++|...+.. +..+..+++|+.|++++|.+....+ ..+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-----QSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-----TTTTTCSEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-----hhhhccccCceEecc
Confidence 9888874 34567788888888888888743333 3567888888888888887765321 2233
Q ss_pred -------------cCCCccEEEeeCCcCCCCC--CccccccccCccEEEeeccccccccchhh
Q 047496 148 -------------NCKKLRSLNLIGNPLDGFL--PSSIGNLSMSLETLLITNCSISGNIPQAI 195 (204)
Q Consensus 148 -------------~~~~L~~l~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 195 (204)
.+++|+++++++|.+++.. +..+.....+|+.|++++|.+++..+..+
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 3456666666666655421 22222222366666666666665544433
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.6e-21 Score=154.75 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=122.0
Q ss_pred cCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecC---CccCCCCCCccEEEcCCCcCccCCCc-cccCC
Q 047496 21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP---SRIGLSLPTVEHLNLELNRFSGTIPS-SITNA 96 (204)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 96 (204)
..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++ ..+. .+++|++|++++|.+...++. .+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-Ccccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCc
Confidence 56788888888888888877777888888888888888876 333 3333 788888888888888753554 46777
Q ss_pred CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc-cccccc
Q 047496 97 SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS-IGNLSM 175 (204)
Q Consensus 97 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~ 175 (204)
++|++|++++|.+++..+..+. ++|+.|++++|.+..+|. .+..+++|++|++++|.++ .+|.. +..++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~------~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~- 497 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK------DVTHLQALQELNVASNQLK-SVPDGVFDRLT- 497 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT------TTTSSCCCSEEECCSSCCC-CCCTTSTTTCT-
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh------hhcCCCCCCEEECCCCCCC-CCCHHHHhcCC-
Confidence 8888888888888765555443 688889998888887763 4457888899999999888 45555 67777
Q ss_pred CccEEEeeccccccccc
Q 047496 176 SLETLLITNCSISGNIP 192 (204)
Q Consensus 176 ~L~~L~l~~n~~~~~~~ 192 (204)
+|+.|++++|++....+
T Consensus 498 ~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCCCEECCSCCBCCCHH
T ss_pred CCCEEEecCCCcCCCcc
Confidence 88899999988876443
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2e-21 Score=154.87 Aligned_cols=174 Identities=20% Similarity=0.267 Sum_probs=143.6
Q ss_pred EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84 (204)
Q Consensus 5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 84 (204)
.+.+++.+. .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCc
Confidence 456666666 6676554 7999999999999988888899999999999999999844444454 89999999999999
Q ss_pred CccCCCccccCCCCCCEEeccCCccccc-ccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496 85 FSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162 (204)
Q Consensus 85 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 162 (204)
+....+..+..+++|++|++++|.+++. .+..++.+++|+.|++++|. +..++. ..+.++++|++|++++|.+
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-----IDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETTC
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH-----hhhhcccccCeeeccCCcc
Confidence 9855555689999999999999999853 46779999999999999998 444432 4688899999999999999
Q ss_pred CCCCCccccccccCccEEEeeccccc
Q 047496 163 DGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 163 ~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
++..|..+..++ +|++|++++|.+.
T Consensus 161 ~~~~~~~l~~l~-~L~~L~l~~n~~~ 185 (549)
T 2z81_A 161 RNYQSQSLKSIR-DIHHLTLHLSESA 185 (549)
T ss_dssp CEECTTTTTTCS-EEEEEEEECSBST
T ss_pred cccChhhhhccc-cCceEecccCccc
Confidence 988888887776 7777777777665
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=2.9e-21 Score=146.62 Aligned_cols=179 Identities=19% Similarity=0.222 Sum_probs=143.3
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCcccc-CCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
+.++++++++. .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.+. .+++..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 46778888777 5666544 4689999999999988887777 8999999999999997 5665555589999999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..++... ...+..+++|++|++++|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG--TC----CTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH--hcCcccCCcCCEEECCCCC
Confidence 99998555667889999999999999999777888999999999999999999887421 1112568899999999999
Q ss_pred CCCCCCccccccccC--ccEEEeeccccc
Q 047496 162 LDGFLPSSIGNLSMS--LETLLITNCSIS 188 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~--L~~L~l~~n~~~ 188 (204)
+++..+..+..++ . ++.|++++|.+.
T Consensus 175 l~~l~~~~~~~l~-~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLP-AWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSC-HHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhcc-HhhcceEEecCCCcc
Confidence 9855545666665 4 588999999886
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.5e-20 Score=147.28 Aligned_cols=160 Identities=28% Similarity=0.431 Sum_probs=81.6
Q ss_pred CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496 22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101 (204)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 101 (204)
.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+ .++ +. .+++|++|++++|.+. ..+. +..+++|++
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-LS-GLTKLTELKLGANQIS-NISP-LAGLTALTN 291 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCC-CCGG-GTTCTTCSE
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh-hh-cCCCCCEEECCCCccC-cccc-ccCCCccCe
Confidence 334444444444443322 123344555555555555442 222 22 4555555555555554 2222 455555666
Q ss_pred EeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEE
Q 047496 102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181 (204)
Q Consensus 102 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~ 181 (204)
|++++|.+.+..+ +..+++|+.|++++|.+.+.+ .+..+++|++|++++|.+++. ..+..++ +|+.|+
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~ 359 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS-------PVSSLTKLQRLFFYNNKVSDV--SSLANLT-NINWLS 359 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG-------GGGGCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEE
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch-------hhccCccCCEeECCCCccCCc--hhhccCC-CCCEEe
Confidence 6666655554322 555566666666666555543 144556666666666666532 3455555 666666
Q ss_pred eeccccccccchhhhhhhhhc
Q 047496 182 ITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 182 l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+++|++++..| +..++.|+
T Consensus 360 l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCC
T ss_pred CCCCccCccch--hhcCCCCC
Confidence 66666665554 55555443
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=6.7e-21 Score=153.92 Aligned_cols=142 Identities=21% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEec
Q 047496 25 NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKL 104 (204)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 104 (204)
++++|++++|.++...+..|.++++|++|++++|.+. .++++.+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4556666666665555555555666666666666554 444444445566666666666555322334555566666666
Q ss_pred cCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccc
Q 047496 105 GGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG 171 (204)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 171 (204)
++|.+++..+..++.+++|+.|++++|.+...+ .+..+..+++|++|++++|.+++..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCcccccccccccc
Confidence 666555444445555666666666666554432 113445555566666666655544444443
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.9e-21 Score=154.69 Aligned_cols=194 Identities=22% Similarity=0.207 Sum_probs=152.1
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++++|+|++|.+....+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+. .+|+..+..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 3689999999999666778999999999999999999988889999999999999999997 778777668999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCccccc-ccccccCCCCCcEEEccCccCCCCcccchhhhccccCC-CccEEEee
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK-KLRSLNLI 158 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~ 158 (204)
.+|.++...+..+..+++|++|++++|.+... .|..++.+++|+.|++++|.+..++.. ....+...+ ....++++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHHTCTTCCCEEECT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc--cccchhhhhhhhhhhhcc
Confidence 99999855556789999999999999998753 567889999999999999999876432 112222222 34578899
Q ss_pred CCcCCCCCCccccccccCccEEEeecccccc-ccchhhhhhh
Q 047496 159 GNPLDGFLPSSIGNLSMSLETLLITNCSISG-NIPQAISTKY 199 (204)
Q Consensus 159 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~ 199 (204)
.|.+....+..+. .. .++.+++.+|.... ..+..+..+.
T Consensus 210 ~n~l~~i~~~~~~-~~-~~~~l~l~~n~~~~~~~~~~~~~l~ 249 (635)
T 4g8a_A 210 LNPMNFIQPGAFK-EI-RLHKLTLRNNFDSLNVMKTCIQGLA 249 (635)
T ss_dssp TCCCCEECTTTTT-TC-EEEEEEEESCCSSHHHHHHHHHTTT
T ss_pred cCcccccCccccc-ch-hhhhhhhhcccccccccchhhcCCc
Confidence 9998854444433 33 56788888875442 3334444443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.6e-21 Score=138.14 Aligned_cols=172 Identities=20% Similarity=0.268 Sum_probs=142.5
Q ss_pred CcceEEccCCc-cccccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCcc--
Q 047496 1 MLKGIYLGYNK-LHGEIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVE-- 76 (204)
Q Consensus 1 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-- 76 (204)
+|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++++|.+. .+|. +. .+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L 132 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LT-KVYSTDIF 132 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CT-TCCBCCSE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cc-cccccccc
Confidence 47899999997 7755666899999999999999 9999888888999999999999999987 5776 43 788888
Q ss_pred -EEEcCCC-cCccCCCccccCCCCCC-EEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchhhhccccC-CC
Q 047496 77 -HLNLELN-RFSGTIPSSITNASKLT-LLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANC-KK 151 (204)
Q Consensus 77 -~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~-~~ 151 (204)
+|++++| .+....+..+..+++|+ ++++++|.++...+..+.. ++|+.|++++|. +..++. ..+.++ ++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-----~~~~~l~~~ 206 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-----DAFGGVYSG 206 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-----TTTTTCSBC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-----HHhhccccC
Confidence 9999999 88755556688999999 9999999998443344544 899999999995 887754 567888 99
Q ss_pred ccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496 152 LRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185 (204)
Q Consensus 152 L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 185 (204)
|+++++++|.+++ +|.. .+. +|+.|+++++
T Consensus 207 L~~L~l~~N~l~~-l~~~--~~~-~L~~L~l~~~ 236 (239)
T 2xwt_C 207 PSLLDVSQTSVTA-LPSK--GLE-HLKELIARNT 236 (239)
T ss_dssp CSEEECTTCCCCC-CCCT--TCT-TCSEEECTTC
T ss_pred CcEEECCCCcccc-CChh--Hhc-cCceeeccCc
Confidence 9999999999984 4544 445 8999998876
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.86 E-value=1.1e-20 Score=151.65 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=145.6
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. .++ .+. .+++|+.|++
T Consensus 44 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~L 116 (605)
T 1m9s_A 44 SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK-DLKKLKSLSL 116 (605)
T ss_dssp TCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TST-TCTTCCEEEC
T ss_pred CCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhc-cCCCCCEEEe
Confidence 4788999999887 343 58899999999999999987655 889999999999999987 444 454 7999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+. .+ ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...+ .+..+++|++|++++|
T Consensus 117 s~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTSCCC-CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred cCCCCC-CC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch-------hhccCCCCCEEECcCC
Confidence 999997 33 5688999999999999999865 67899999999999999998775 2788999999999999
Q ss_pred cCCCCCCccccccccCccEEEeecccccccc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNI 191 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 191 (204)
.+++ + ..+..++ +|+.|++++|.+++..
T Consensus 186 ~i~~-l-~~l~~l~-~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 HISD-L-RALAGLK-NLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCB-C-GGGTTCT-TCSEEECCSEEEECCC
T ss_pred CCCC-C-hHHccCC-CCCEEEccCCcCcCCc
Confidence 9985 3 4678887 9999999999998653
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.4e-22 Score=152.31 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=100.7
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCcccccc-CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++.|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEEC
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEEC
Confidence 45556666655533333 34556666666666665543 444455566666666666665544444444 4666666666
Q ss_pred CCC-cCccC-CCccccCCCCCCEEeccCC-ccccc-ccccccCCC-CCcEEEccCcc--CCCCcccchhhhccccCCCcc
Q 047496 81 ELN-RFSGT-IPSSITNASKLTLLKLGGN-TFSGL-IPDTIGNLR-NLEWLGLAYNN--LTSSTSKLSFLSSLANCKKLR 153 (204)
Q Consensus 81 ~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~ 153 (204)
.+| .++.. .+..+..+++|++|++++| .+++. .+..+..++ +|+.|++++|. +++. .++..+..+++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~----~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----DLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----HHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH----HHHHHHhhCCCCC
Confidence 666 34321 3333455566666666666 55432 344455555 66666666653 2211 1123444556666
Q ss_pred EEEeeCCc-CCCCCCccccccccCccEEEeecc-ccccccchhhhhhhhh
Q 047496 154 SLNLIGNP-LDGFLPSSIGNLSMSLETLLITNC-SISGNIPQAISTKYLF 201 (204)
Q Consensus 154 ~l~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~l 201 (204)
+|++++|. +++..+..+..++ +|++|++++| .++......++.++.|
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred EEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 66666665 4444455555554 5666666666 3332222234444444
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.9e-20 Score=148.07 Aligned_cols=173 Identities=21% Similarity=0.264 Sum_probs=108.3
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+. .+| ..+++|+.|++++|.+++ .|. +.. +|++|++++|.++ .+|. .+++|+.|+++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls 148 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINAD 148 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECC
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCC
Confidence 344444444444 333 234555555555555554 222 322 5566666666554 2444 35666666666
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhcc-ccCCCccEEEeeCC
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL-ANCKKLRSLNLIGN 160 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~n 160 (204)
+|.++ .+|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++.+|. + ...+ ...+.|+.|++++|
T Consensus 149 ~N~l~-~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~--~~~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 149 NNQLT-MLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-V--PVRNHHSEETEIFFRCREN 217 (571)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-C--C--------CCEEEECCSS
T ss_pred CCccC-cCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-H--HHhhhcccccceEEecCCC
Confidence 66665 3443 45677777777777775 444 44 778888888888877663 1 1100 11122399999999
Q ss_pred cCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 200 (204)
.++ .+|..+..++ +|+.|++++|.+++.+|..|+.+..
T Consensus 218 ~l~-~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 218 RIT-HIPENILSLD-PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CCCGGGGGSC-TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cce-ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 998 6888888887 8999999999999999999888765
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=6.4e-22 Score=147.75 Aligned_cols=185 Identities=19% Similarity=0.197 Sum_probs=123.8
Q ss_pred EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496 5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84 (204)
Q Consensus 5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 84 (204)
.+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +. .+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-TCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-hcCCCCEEECcCCc
Confidence 3444444443333445567899999999999998888889999999999999999974443 43 78999999999987
Q ss_pred CccCCC----------------ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhcc-c
Q 047496 85 FSGTIP----------------SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL-A 147 (204)
Q Consensus 85 ~~~~~~----------------~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~ 147 (204)
+....+ .....+++|++|++++|.+++..+..+..+++|+.|++++|.+...+. ..+ .
T Consensus 92 l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~ 166 (317)
T 3o53_A 92 VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----AELAA 166 (317)
T ss_dssp EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-----GGGGG
T ss_pred cccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-----HHHhh
Confidence 652100 001235678888888888887777788899999999999999887642 222 3
Q ss_pred cCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 148 NCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 148 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
.+++|++|++++|.+++. +.. ..++ +|++|++++|.+++. |..|..++.|
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~~-~~l~-~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KGQ-VVFA-KLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-ECC-CCCT-TCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred ccCcCCEEECCCCcCccc-ccc-cccc-cCCEEECCCCcCCcc-hhhhcccCcc
Confidence 455666666666665532 111 1233 555555555555532 2234444443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.4e-22 Score=152.33 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=137.3
Q ss_pred CcceEEccCCccccc-cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCC-cceee-cCCccCCCCCCccE
Q 047496 1 MLKGIYLGYNKLHGE-IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINN-SLFGS-LPSRIGLSLPTVEH 77 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~~L~~ 77 (204)
+|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~ 172 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDE 172 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCE
Confidence 478899999988755 6777888899999999999888777777788899999999988 56532 333333 6888999
Q ss_pred EEcCCC-cCccC-CCccccCCC-CCCEEeccCCc--cc-ccccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCC
Q 047496 78 LNLELN-RFSGT-IPSSITNAS-KLTLLKLGGNT--FS-GLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCK 150 (204)
Q Consensus 78 L~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~ 150 (204)
|++.+| .++.. .+..+..++ +|++|++++|. ++ ...+..+..+++|+.|++++|. +++.. +..+..++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~l~~l~ 247 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-----FQEFFQLN 247 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-----GGGGGGCT
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-----HHHHhCCC
Confidence 999988 77632 355567778 88888888884 44 3445667778888888888887 44331 24667778
Q ss_pred CccEEEeeCCc-CCCCCCccccccccCccEEEeeccccccccchhhh-hhhhh
Q 047496 151 KLRSLNLIGNP-LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS-TKYLF 201 (204)
Q Consensus 151 ~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~l 201 (204)
+|++|++++|. +.......+..++ +|+.|++++| ++......+. .++.|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~~~~~~l~~~l~~L 298 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPDGTLQLLKEALPHL 298 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCTTCHHHHHHHSTTS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCHHHHHHHHhhCcce
Confidence 88888888884 4433333566666 8888888888 5544434443 24443
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=1.2e-20 Score=131.60 Aligned_cols=154 Identities=21% Similarity=0.285 Sum_probs=129.1
Q ss_pred cCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCC
Q 047496 21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLT 100 (204)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 100 (204)
+.+++|+.|++++|.+... + .+..+++|++|++++|.+. . ++.+. .+++|++|++++|.+....+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-~-~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-N-YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-C-CGGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-c-chhhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 5678999999999999854 3 4788999999999999764 3 33454 799999999999999866788899999999
Q ss_pred EEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccE
Q 047496 101 LLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179 (204)
Q Consensus 101 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~ 179 (204)
+|++++|.+++..+..+..+++|+.|++++|. +..++ .+..+++|++|++++|.+++ ++ .+..++ +|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-~L~~ 185 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-------PLKTLPELKSLNIQFDGVHD-YR-GIEDFP-KLNQ 185 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-------GGGGCSSCCEEECTTBCCCC-CT-TGGGCS-SCCE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-------hhcCCCCCCEEECCCCCCcC-hH-HhccCC-CCCE
Confidence 99999999998778889999999999999998 76663 57889999999999999985 34 677887 9999
Q ss_pred EEeecccccc
Q 047496 180 LLITNCSISG 189 (204)
Q Consensus 180 L~l~~n~~~~ 189 (204)
|++++|+|.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999999864
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=4.9e-20 Score=130.63 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=89.6
Q ss_pred eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496 4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN 83 (204)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 83 (204)
.++++++.+. .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCC
Confidence 4555555554 4444333 4666666666666665555666666666666666666533333333 5666666666666
Q ss_pred cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. ..+..+++|+++++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-----HHHhCCCCCCEEEeCCCCcC
Confidence 6663223334566666666666666665555666666666666666666666543 34555666666666666653
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=2.7e-20 Score=145.80 Aligned_cols=168 Identities=26% Similarity=0.371 Sum_probs=142.5
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+.+ + +.+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++. +. .+++|+.|++
T Consensus 222 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~L 294 (466)
T 1o6v_A 222 NLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LA-GLTALTNLEL 294 (466)
T ss_dssp TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GT-TCTTCSEEEC
T ss_pred CCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-cc-CCCccCeEEc
Confidence 36778888887763 2 468889999999999999987654 788999999999999987 4444 44 7999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+. ..+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.+ .+..+++|++|++++|
T Consensus 295 ~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 295 NENQLE-DISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-------SLANLTNINWLSAGHN 363 (466)
T ss_dssp CSSCCS-CCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred CCCccc-Cchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-------hhccCCCCCEEeCCCC
Confidence 999987 3333 7889999999999999987654 789999999999999998763 5788999999999999
Q ss_pred cCCCCCCccccccccCccEEEeecccccc
Q 047496 161 PLDGFLPSSIGNLSMSLETLLITNCSISG 189 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 189 (204)
.+++..| +..++ +|+.|++++|.+++
T Consensus 364 ~l~~~~~--~~~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 364 QISDLTP--LANLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp CCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred ccCccch--hhcCC-CCCEEeccCCcccC
Confidence 9987665 77777 99999999999986
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=3.5e-20 Score=129.23 Aligned_cols=150 Identities=17% Similarity=0.278 Sum_probs=126.9
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+. .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEEC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEEEe
Confidence 4789999999988 556 688999999999999976543 4678899999999999999865677766 8999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCc-ccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNT-FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
++|.+....+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|.+.+++ .+..+++|++|++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-------~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-------GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-------TGGGCSSCCEEEECB
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-------HhccCCCCCEEEeeC
Confidence 9999986677888999999999999998 66 444 6899999999999999998764 577889999999999
Q ss_pred CcCCC
Q 047496 160 NPLDG 164 (204)
Q Consensus 160 n~~~~ 164 (204)
|.+.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 99864
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=9.4e-20 Score=129.96 Aligned_cols=151 Identities=24% Similarity=0.262 Sum_probs=98.3
Q ss_pred eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496 4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN 83 (204)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 83 (204)
.++.+++++. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCC
Confidence 4555555554 4444333 66777777777777666666667777777777777764 556555546777777777777
Q ss_pred cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
.++...+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+..++. ..+..+++|+++++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-----GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-----HHHhCCCCCCEEEeeCCCcc
Confidence 776433444566777777777777766 456666667777777777777766643 34566667777777777665
Q ss_pred C
Q 047496 164 G 164 (204)
Q Consensus 164 ~ 164 (204)
.
T Consensus 173 c 173 (229)
T 3e6j_A 173 C 173 (229)
T ss_dssp T
T ss_pred C
Confidence 4
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.2e-19 Score=141.68 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=92.5
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+.+ +| .++.+++|++|++++|.+++. + +..+++|++|++++|.+.+ ++ +. .+++|++|+++
T Consensus 44 L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~-~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VT-PLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CT-TCTTCCEEECC
T ss_pred CCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cC-CCCcCCEEECC
Confidence 5667777776663 23 466666677777776666654 1 5556666666666666542 22 22 45555555555
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccc-------------------cccccCCCCCcEEEccCccCCCCcccc--
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLI-------------------PDTIGNLRNLEWLGLAYNNLTSSTSKL-- 140 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~-- 140 (204)
+|.+.. ++ +..+++|++|++++|.+++.. ...+..+++|+.|++++|.+..++...
T Consensus 115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~ 191 (457)
T 3bz5_A 115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK 191 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCT
T ss_pred CCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCC
Confidence 555542 22 444445555555544443210 002333444555555555444432000
Q ss_pred ------------hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496 141 ------------SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK 198 (204)
Q Consensus 141 ------------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 198 (204)
.. ..+..+++|++|++++|.+++ +| +..++ +|+.|++++|.+++..+..+..+
T Consensus 192 ~L~~L~l~~N~l~~-~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 192 LLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp TCCEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCCCTTCTTC
T ss_pred CCCEEECcCCcCCe-eccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcCHHHCCCC
Confidence 00 014445566666666666664 33 44555 66666666666665544444443
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=7.5e-20 Score=129.68 Aligned_cols=133 Identities=22% Similarity=0.247 Sum_probs=61.7
Q ss_pred cceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEcc
Q 047496 50 LKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA 129 (204)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~ 129 (204)
+++|++++|.+.+..+...+..+++|+.|++.+|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 34445555444422232322244445555555554443333344444555555555555544444444455555555555
Q ss_pred CccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496 130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
+|.+..+++ ..+..+++|++|++++|.+++..|..|..++ +|+.|++++|.++
T Consensus 114 ~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 166 (220)
T 2v70_A 114 SNRITCVGN-----DSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPFN 166 (220)
T ss_dssp TSCCCCBCT-----TSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCEE
T ss_pred CCcCCeECH-----hHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCCc
Confidence 555444422 2344445555555555555444444444444 4555555555444
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1e-19 Score=128.98 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=132.6
Q ss_pred CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105 (204)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (204)
-+.++++++.++.. |..+. ++++.|++++|.+. .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 36889999988865 33332 68999999999998 6666555589999999999999986778899999999999999
Q ss_pred CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496 106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185 (204)
Q Consensus 106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 185 (204)
+|.++...+..+..+++|+.|++++|.+..++. ..+..+++|++|++++|.+++..+..+..++ +|++|++++|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N 162 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRV-----DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQN 162 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSS
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCH-----HHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCC
Confidence 999997666678999999999999999988854 5788999999999999999977777788888 9999999999
Q ss_pred cccc
Q 047496 186 SISG 189 (204)
Q Consensus 186 ~~~~ 189 (204)
.+.-
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 9864
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=7.7e-20 Score=129.61 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=131.4
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCC-ccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS-APIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++++++++.+. .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.++ .+++..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 57889999887 5676554 467899999999998744 55789999999999999998 5665555589999999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 161 (204)
+|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...++ ..+..+++|++|++++|.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-----GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-----TTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-----HHhcCCCCCCEEEecCcC
Confidence 999985556678999999999999999998888899999999999999999988843 578889999999999999
Q ss_pred CCCC
Q 047496 162 LDGF 165 (204)
Q Consensus 162 ~~~~ 165 (204)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 8643
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=1.8e-20 Score=136.37 Aligned_cols=166 Identities=22% Similarity=0.286 Sum_probs=131.0
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (204)
+.++++++.+.+ ++ .+..+++|+.|++++|.++... .+..+++|+.|++++|.+. .+++ +. .+++|++|++++
T Consensus 22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~L~L~~ 94 (263)
T 1xeu_A 22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEELSVNR 94 (263)
T ss_dssp HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCS
T ss_pred HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCEEECCC
Confidence 345677777663 33 4678899999999999888543 5778899999999999887 5555 44 789999999999
Q ss_pred CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496 83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 162 (204)
|.+. .++.. .. ++|++|++++|.+++. ..+..+++|+.|++++|.+.+.+ .+..+++|++|++++|.+
T Consensus 95 N~l~-~l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-------~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 95 NRLK-NLNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-------MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SCCS-CCTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-------GGGGCTTCCEEECTTSCC
T ss_pred CccC-CcCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-------HHccCCCCCEEECCCCcC
Confidence 9887 44442 33 8899999999988854 45888999999999999888763 577788999999999999
Q ss_pred CCCCCccccccccCccEEEeeccccccc
Q 047496 163 DGFLPSSIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
++. ..+..++ +|+.|++++|.++..
T Consensus 163 ~~~--~~l~~l~-~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLK-KVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCC-CCCEEEEEEEEEECC
T ss_pred cch--HHhccCC-CCCEEeCCCCcccCC
Confidence 855 6677777 899999999988755
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.3e-19 Score=140.09 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=62.2
Q ss_pred ccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccc
Q 047496 93 ITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN 172 (204)
Q Consensus 93 ~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 172 (204)
+..+++|++|++++|.+++. .++.+++|+.|++++|.+..+| +..+++|++|++++|.+++..+..+..
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--------~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--------VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--------ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 34445555555555555533 2566777888888888777653 667899999999999999765444433
Q ss_pred cc------cCccEEEeeccccccccchhhhhhhhhc
Q 047496 173 LS------MSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 173 ~~------~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
+. .+|+.|++++|.+.+.+| ++.++.|+
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred CCEEeccCCCCCEEECCCCccCCccc--ccccccCC
Confidence 32 145667777777666666 34444443
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=6.1e-22 Score=150.39 Aligned_cols=193 Identities=22% Similarity=0.215 Sum_probs=120.4
Q ss_pred CcceEEccCCccccccC----hhccCCC-CCcEEEccCccccccCCccccCC-----CccceeeecCCcceeecCCccC-
Q 047496 1 MLKGIYLGYNKLHGEIP----HEIANLR-NLEALALGMNNLVGVVSAPIFNM-----STLKIIILINNSLFGSLPSRIG- 69 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~- 69 (204)
+|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 37788888888875555 5667777 78888888888887666555543 7888888888887643333221
Q ss_pred --CCC-CCccEEEcCCCcCccCCCcccc----C-CCCCCEEeccCCccccccc----ccccCCC-CCcEEEccCccCCCC
Q 047496 70 --LSL-PTVEHLNLELNRFSGTIPSSIT----N-ASKLTLLKLGGNTFSGLIP----DTIGNLR-NLEWLGLAYNNLTSS 136 (204)
Q Consensus 70 --~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~ 136 (204)
..+ ++|++|++++|.++...+..+. . .++|++|++++|.+.+... ..+..++ +|+.|++++|.+...
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 133 6788888888887644333332 2 2577888888777764332 3344444 777777777777655
Q ss_pred cccchhhhccccC-CCccEEEeeCCcCCCC----CCccccccccCccEEEeeccccccccchh
Q 047496 137 TSKLSFLSSLANC-KKLRSLNLIGNPLDGF----LPSSIGNLSMSLETLLITNCSISGNIPQA 194 (204)
Q Consensus 137 ~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 194 (204)
+.. .+...+..+ ++|++|++++|.+.+. ++..+....++|++|++++|.+++..+..
T Consensus 183 ~~~-~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 183 NCA-ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp CHH-HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred hHH-HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 321 122344445 3777777777776643 22333333236777777777776654433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=3.6e-20 Score=140.08 Aligned_cols=192 Identities=18% Similarity=0.152 Sum_probs=126.3
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCcccccc-CCccccCCCccce-eeecCCcceeecCCccCCCCCCccEEE
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKI-IILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
+++|+|++|++....+..|..+++|++|++++|.+.+. .+..|.+++++++ +.+.++.+. .+++..+..+++|++|+
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL 110 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccccccc
Confidence 56777777777744444677777788888877776543 3455667776654 444556665 55555555777788888
Q ss_pred cCCCcCccCCCccccCCCCCCEEeccCC-cccccccccccCC-CCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496 80 LELNRFSGTIPSSITNASKLTLLKLGGN-TFSGLIPDTIGNL-RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157 (204)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 157 (204)
+.+|.+....+..+....++..+++.++ .+....+..+..+ ..++.|++++|.+..++. ......+++++++
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~------~~f~~~~L~~l~l 184 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN------SAFNGTQLDELNL 184 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT------TSSTTEEEEEEEC
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh------hhccccchhHHhh
Confidence 8777776333344445556666766543 4443333445554 357888999998887753 2334467888998
Q ss_pred eC-CcCCCCCC-ccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 158 IG-NPLDGFLP-SSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 158 ~~-n~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.+ |.+. .+| ..|..++ +|+.|++++|+++...+..|.++++|+
T Consensus 185 ~~~n~l~-~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 185 SDNNNLE-ELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp TTCTTCC-CCCTTTTTTEE-CCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred ccCCccc-CCCHHHhccCc-ccchhhcCCCCcCccChhhhccchHhh
Confidence 76 4555 455 4567777 899999999999866666777777665
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=4.1e-19 Score=126.63 Aligned_cols=158 Identities=21% Similarity=0.201 Sum_probs=131.3
Q ss_pred CCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEe
Q 047496 24 RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLK 103 (204)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 103 (204)
..-+.++.+++.++..... + .++|++|++++|.+.+ +++..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 19 Cs~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EETTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EeCCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 3467899999888755432 3 3789999999999984 4444444899999999999999844445678999999999
Q ss_pred ccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEee
Q 047496 104 LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLIT 183 (204)
Q Consensus 104 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 183 (204)
+++|.++...+..+..+++|+.|++++|.+..+| ..+..+++|++|++++|.+.+..+..+..++ +|+.|+++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~ 167 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP------RGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLF 167 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC------TTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccC------cccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEee
Confidence 9999999777777899999999999999999876 4678899999999999999966666788887 99999999
Q ss_pred ccccccccc
Q 047496 184 NCSISGNIP 192 (204)
Q Consensus 184 ~n~~~~~~~ 192 (204)
+|.+....+
T Consensus 168 ~N~~~c~c~ 176 (229)
T 3e6j_A 168 GNPWDCECR 176 (229)
T ss_dssp TSCBCTTBG
T ss_pred CCCccCCcc
Confidence 999986543
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=8.4e-20 Score=138.60 Aligned_cols=156 Identities=25% Similarity=0.230 Sum_probs=134.2
Q ss_pred cceEEccCCccccccChhcc-CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 2 LKGIYLGYNKLHGEIPHEIA-NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
++.|+|++|.+....+..+. .+++|+.|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEEC
Confidence 68999999999977777777 8999999999999999888888999999999999999997 677766668999999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccc---cCCCCCcEEEccCccCCCCcccchhhhccccCCC--ccEE
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI---GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKK--LRSL 155 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--L~~l 155 (204)
.+|.+....+..+..+++|++|++++|.++...+..+ ..+++|+.|++++|.+..++. ..+..++. ++.+
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~l~~~~l~~l 194 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-----TDLQKLPAWVKNGL 194 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-----HHHHHSCHHHHTTE
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-----HHhhhccHhhcceE
Confidence 9999986667889999999999999999996544455 679999999999999998864 45666665 4889
Q ss_pred EeeCCcCC
Q 047496 156 NLIGNPLD 163 (204)
Q Consensus 156 ~l~~n~~~ 163 (204)
++++|.+.
T Consensus 195 ~l~~N~~~ 202 (361)
T 2xot_A 195 YLHNNPLE 202 (361)
T ss_dssp ECCSSCEE
T ss_pred EecCCCcc
Confidence 99999875
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=4e-22 Score=152.60 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCccEEEcCCCcCcc-CCC---ccccCCCCCCEEeccCCcccc-----cccccccCCCCCcEEEccCccCCCCcccchhh
Q 047496 73 PTVEHLNLELNRFSG-TIP---SSITNASKLTLLKLGGNTFSG-----LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL 143 (204)
Q Consensus 73 ~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 143 (204)
++|++|++++|.++. ..+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++... ...++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHH
Confidence 445555555544431 111 123344455555555555441 11224445555555555555543210 00122
Q ss_pred hccccCCCccEEEeeCCcCCCC----CCccccc--cccCccEEEeecccccc
Q 047496 144 SSLANCKKLRSLNLIGNPLDGF----LPSSIGN--LSMSLETLLITNCSISG 189 (204)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~--~~~~L~~L~l~~n~~~~ 189 (204)
..+..+++|++|++++|.+++. ++..+.. ++ +|++|++++|.+++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~-~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIEL 288 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC-CCCEEECCSSCCBH
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC-CeEEEECcCCcCCH
Confidence 3455555666666666655533 2233321 33 56666666666655
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=4.8e-22 Score=152.19 Aligned_cols=200 Identities=21% Similarity=0.270 Sum_probs=141.6
Q ss_pred CcceEEccCCccccccC----hhccCCCCCcEEEccCcccc---ccCCcc-------ccCCCccceeeecCCccee----
Q 047496 1 MLKGIYLGYNKLHGEIP----HEIANLRNLEALALGMNNLV---GVVSAP-------IFNMSTLKIIILINNSLFG---- 62 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~~~~~~~---- 62 (204)
+|++|++++|.+....+ ..+..+++|++|++++|.+. +..|.. +..+++|++|++++|.+.+
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 47889999998876543 34668899999999986443 333333 3578899999999998874
Q ss_pred ecCCccCCCCCCccEEEcCCCcCccCCCcc----ccCC---------CCCCEEeccCCcccc-ccc---ccccCCCCCcE
Q 047496 63 SLPSRIGLSLPTVEHLNLELNRFSGTIPSS----ITNA---------SKLTLLKLGGNTFSG-LIP---DTIGNLRNLEW 125 (204)
Q Consensus 63 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~l~l~~~~~~~-~~~---~~l~~l~~L~~ 125 (204)
.++..+. .+++|++|++++|.++...+.. +..+ ++|++|++++|.+.. ..+ ..+..+++|+.
T Consensus 113 ~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 113 PLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 2455554 6889999999999886333322 3333 889999999998863 333 35677889999
Q ss_pred EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC----CCCCccccccccCccEEEeeccccccc----cchhhhh
Q 047496 126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD----GFLPSSIGNLSMSLETLLITNCSISGN----IPQAIST 197 (204)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~ 197 (204)
|++++|.+............+..+++|++|++++|.++ ..++..+..++ +|++|++++|.+++. +|.++..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999987632111011126778899999999999985 45677777777 899999999999876 4455432
Q ss_pred --hhhhc
Q 047496 198 --KYLFQ 202 (204)
Q Consensus 198 --l~~l~ 202 (204)
++.|+
T Consensus 271 ~~~~~L~ 277 (386)
T 2ca6_A 271 LENIGLQ 277 (386)
T ss_dssp CSSCCCC
T ss_pred ccCCCeE
Confidence 45443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.3e-19 Score=132.30 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=136.2
Q ss_pred ccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496 20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL 99 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 99 (204)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.+. .+++ +. .+++|++|++++|.+. .. ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~-~~-~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVK-DL-SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CG-GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCC-CC-hhhccCCCC
Confidence 34678999999999998865 2 3778999999999999997 4554 44 8999999999999987 33 448899999
Q ss_pred CEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccE
Q 047496 100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179 (204)
Q Consensus 100 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~ 179 (204)
++|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +..++ +|+.
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-KLQN 182 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-TCCE
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-------hhhccCCCCCEEEccCCccccchh--hcCCC-ccCE
Confidence 9999999999864 5688999999999999999877 357889999999999999986443 77887 9999
Q ss_pred EEeeccccccccchhhhhhhhhc
Q 047496 180 LLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 180 L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
|++++|.+++. | .+..++.|+
T Consensus 183 L~L~~N~i~~l-~-~l~~l~~L~ 203 (291)
T 1h6t_A 183 LYLSKNHISDL-R-ALAGLKNLD 203 (291)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCS
T ss_pred EECCCCcCCCC-h-hhccCCCCC
Confidence 99999999854 4 377777665
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1e-18 Score=139.25 Aligned_cols=167 Identities=21% Similarity=0.322 Sum_probs=137.5
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+++.|++++|.+.+ +|..+. ++|+.|++++|.++.. | ..+++|++|++++|.++ .+|. +. . +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~-~ip~-l~-~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISL-P---ELPASLEYLDACDNRLS-TLPE-LP-A--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC-CC-T--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCC-Ccch-hh-c--CCCEEEC
Confidence 47899999999985 776553 8899999999999954 4 34789999999999998 4777 54 2 9999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+..+|. +. ++|++|++++|
T Consensus 128 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-------l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 128 DNNQLT-MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-------LP--ESLEALDVSTN 190 (571)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-------CC--TTCCEEECCSS
T ss_pred CCCcCC-CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-------hh--CCCCEEECcCC
Confidence 999998 4666 67899999999999986 454 57899999999999998763 33 89999999999
Q ss_pred cCCCCCCccccccccCc-------cEEEeeccccccccchhhhhhhhhc
Q 047496 161 PLDGFLPSSIGNLSMSL-------ETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.++ .+|. +.. +| +.|++++|.|+ .+|..+..++.|+
T Consensus 191 ~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 191 LLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred CCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence 999 6666 543 56 99999999999 6788888887765
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=7.5e-21 Score=144.40 Aligned_cols=187 Identities=22% Similarity=0.208 Sum_probs=143.6
Q ss_pred eEEccCCccccccChhccCCCCCcEEEccCccccccCC----ccccCCC-ccceeeecCCcceeecCCccCC---C-CCC
Q 047496 4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS----APIFNMS-TLKIIILINNSLFGSLPSRIGL---S-LPT 74 (204)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~---~-~~~ 74 (204)
.+.++++.+.+.+|..+....+|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.. . .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999987777777777779999999999998776 6677888 8999999999987544443331 1 389
Q ss_pred ccEEEcCCCcCccCCCccc----cCC-CCCCEEeccCCcccccccccc----cC-CCCCcEEEccCccCCCCcccchhhh
Q 047496 75 VEHLNLELNRFSGTIPSSI----TNA-SKLTLLKLGGNTFSGLIPDTI----GN-LRNLEWLGLAYNNLTSSTSKLSFLS 144 (204)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~~~~ 144 (204)
|++|++++|.++...+..+ ... ++|++|++++|.+++..+..+ .. ..+|+.|++++|.+.+.... .+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD-ELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH-HHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH-HHHH
Confidence 9999999999985555433 344 899999999999987655443 34 36999999999999765321 2334
Q ss_pred ccccCC-CccEEEeeCCcCCCCCCcccccc----ccCccEEEeecccccccc
Q 047496 145 SLANCK-KLRSLNLIGNPLDGFLPSSIGNL----SMSLETLLITNCSISGNI 191 (204)
Q Consensus 145 ~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~~~~~~ 191 (204)
.+...+ +|++|++++|.+++..+..+... +++|++|++++|.+++..
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 556665 99999999999987766655433 238999999999999743
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.3e-19 Score=142.52 Aligned_cols=174 Identities=22% Similarity=0.329 Sum_probs=142.2
Q ss_pred EccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcC
Q 047496 6 YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRF 85 (204)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 85 (204)
.+..+.+....+ +..+++|+.|++++|.+.... .+..+++|+.|++++|.+. .+++ +. .+++|+.|++++|.+
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKI 99 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCC
Confidence 344444443222 457889999999999988653 4788999999999999997 4554 44 899999999999999
Q ss_pred ccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC
Q 047496 86 SGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF 165 (204)
Q Consensus 86 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 165 (204)
. .++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 100 ~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 100 K-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp C-CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-------GGGGSCTTCSEEECCSSCCCCC
T ss_pred C-CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-------hhhcccCCCCEEECcCCcCCCc
Confidence 7 444 688999999999999999853 5588999999999999999876 3678899999999999999865
Q ss_pred CCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 166 LPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 166 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.+ +..++ +|+.|++++|.+++. ..+..++.|+
T Consensus 169 ~~--l~~l~-~L~~L~Ls~N~i~~l--~~l~~l~~L~ 200 (605)
T 1m9s_A 169 VP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLD 200 (605)
T ss_dssp GG--GTTCT-TCCEEECCSSCCCBC--GGGTTCTTCS
T ss_pred hh--hccCC-CCCEEECcCCCCCCC--hHHccCCCCC
Confidence 55 77887 999999999999864 3577777765
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=6.8e-18 Score=135.87 Aligned_cols=50 Identities=30% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496 149 CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200 (204)
Q Consensus 149 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 200 (204)
+++|++|++++|.++ .+|..+..++ +|+.|++++|.+++..|..|..++.
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~~l~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGSC-TTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cccCcEEeCCCCCCC-cCCHHHhhcc-ccCEEEecCCCCCCcCHHHHHhccc
Confidence 456667777777666 5666666666 7777777777777777776666554
No 106
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=5.4e-18 Score=136.46 Aligned_cols=169 Identities=23% Similarity=0.213 Sum_probs=114.7
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC------------
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG------------ 69 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------ 69 (204)
|++|++++|.+.. +|. .+++|+.|++++|.++.... .+++|++|++++|.+. .+|....
T Consensus 103 L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 103 LLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQL 173 (622)
T ss_dssp CCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCC
T ss_pred CCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCC
Confidence 4555555555542 222 34556666666666654322 1255666666666554 2222110
Q ss_pred ----CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhc
Q 047496 70 ----LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSS 145 (204)
Q Consensus 70 ----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 145 (204)
..+++|+.|++++|.+. .++. ..++|+.|++++|.++. ++. .+++|+.|++++|.+..++
T Consensus 174 ~~l~~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp-------- 237 (622)
T 3g06_A 174 TSLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP-------- 237 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC--------
T ss_pred CCCcccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC--------
Confidence 13477888888888877 4444 24688999999998873 343 3478999999999998775
Q ss_pred cccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 146 LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 146 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
..+++|++|++++|.++ .+|. ..+ +|+.|++++|.++ .+|..|..++.|+
T Consensus 238 -~~l~~L~~L~Ls~N~L~-~lp~---~~~-~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLT-SLPM---LPS-GLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp -CCCTTCCEEECCSSCCS-CCCC---CCT-TCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred -CCCCcCcEEECCCCCCC-cCCc---ccc-cCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 23578999999999998 5565 344 8999999999999 7799999988775
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2.1e-21 Score=151.63 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCccccccccccc-----CCCCCcEEEccCccCCCCcccchh
Q 047496 72 LPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLIPDTIG-----NLRNLEWLGLAYNNLTSSTSKLSF 142 (204)
Q Consensus 72 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~ 142 (204)
+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.++.... ..+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-SHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-HHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH-HHH
Confidence 44555555555554421 233334455555555555554432222221 12355555555555443211 112
Q ss_pred hhccccCCCccEEEeeCCcCCCCCCccccc-----cccCccEEEeecccccc----ccchhhhhhhhhc
Q 047496 143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGN-----LSMSLETLLITNCSISG----NIPQAISTKYLFQ 202 (204)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~l~~l~ 202 (204)
+..+..+++|++|++++|.+++..+..+.. .+ +|++|++++|.+++ .+|..+..++.|+
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC-ceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 334445566666666666655433333322 22 56666666666654 4455555554443
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=3.8e-18 Score=133.10 Aligned_cols=172 Identities=26% Similarity=0.395 Sum_probs=80.1
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|++|++++|.+. .+| .++.+++|++|++++|.+++.. . ..++|+.|++++|.+. .+|. ..++|++|+++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~-~l~~----~~~~L~~L~ls 285 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVS 285 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECC
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCccc-ccCc----ccCcCCEEECc
Confidence 455555555554 444 2556666666666666655422 1 1245555555555554 2332 12455555655
Q ss_pred CCcCcc--CCCcc-------------ccCC-CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhc
Q 047496 82 LNRFSG--TIPSS-------------ITNA-SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSS 145 (204)
Q Consensus 82 ~~~~~~--~~~~~-------------~~~~-~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 145 (204)
+|.+.. ..+.. +..+ ++|++|++++|.+++ .|.. +++|+.|++++|.+..+|.
T Consensus 286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~------- 354 (454)
T 1jl5_A 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE------- 354 (454)
T ss_dssp SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC-------
T ss_pred CCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc-------
Confidence 555542 11111 1111 355555665555553 2322 4667777777776665541
Q ss_pred cccCCCccEEEeeCCcCCC--CCCcccccc-------------ccCccEEEeecccccc--ccchhhhhh
Q 047496 146 LANCKKLRSLNLIGNPLDG--FLPSSIGNL-------------SMSLETLLITNCSISG--NIPQAISTK 198 (204)
Q Consensus 146 ~~~~~~L~~l~l~~n~~~~--~~~~~~~~~-------------~~~L~~L~l~~n~~~~--~~~~~~~~l 198 (204)
.+++|++|++++|.+++ .+|.++..+ + +|+.|++++|.+++ .+|.++..+
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ-NLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC-cCCEEECCCCcCCccccchhhHhhe
Confidence 25678888888888876 667776665 4 78888888888876 677776655
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=3.2e-18 Score=124.48 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=125.7
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL 80 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 80 (204)
+|++|++++|.+. .++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+. .++.. . . ++|++|++
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~-~-~-~~L~~L~L 113 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI-P-S-ACLSRLFL 113 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTC-C-C-SSCCEEEC
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcc-c-c-CcccEEEc
Confidence 4789999999987 455 68899999999999999997655 889999999999999997 55543 2 3 89999999
Q ss_pred CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
++|.+. .. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|
T Consensus 114 ~~N~l~-~~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNNELR-DT-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSSCCS-BS-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-------TTSTTCCCCCEEEEEEE
T ss_pred cCCccC-CC-hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-------HHhccCCCCCEEeCCCC
Confidence 999998 44 4588999999999999999865 3688999999999999999877 35788999999999999
Q ss_pred cCCCC
Q 047496 161 PLDGF 165 (204)
Q Consensus 161 ~~~~~ 165 (204)
.++..
T Consensus 183 ~~~~~ 187 (263)
T 1xeu_A 183 KCVNE 187 (263)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 98754
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.6e-18 Score=130.96 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=147.9
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE-EcC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL-NLE 81 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~ 81 (204)
++++.++++++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+.+.++...+..++++.++ .+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34566666776 6776653 6899999999999988888899999999999999998767888877788887764 566
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccC-ccCCCCcccchhhhccccCC-CccEEEeeC
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY-NNLTSSTSKLSFLSSLANCK-KLRSLNLIG 159 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~ 159 (204)
.|.+....+..+..+++|+++++++|.+....+..+....++..+++.+ +.+..++. ..+..+. .++.|++++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-----~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-----NSFVGLSFESVILWLNK 163 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-----TSSTTSBSSCEEEECCS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-----cchhhcchhhhhhcccc
Confidence 6888856677889999999999999999866555666677788888866 45655543 3455554 689999999
Q ss_pred CcCCCCCCccccccccCccEEEeec-cccccccchhhhhhhhhc
Q 047496 160 NPLDGFLPSSIGNLSMSLETLLITN-CSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 160 n~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~l~ 202 (204)
|.++ .++..++... +++.+++.+ |.++...+++|..++.|+
T Consensus 164 N~i~-~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp SCCC-EECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred cccc-CCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccc
Confidence 9998 5565655666 799999985 577755557788887765
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=8.8e-21 Score=151.38 Aligned_cols=188 Identities=20% Similarity=0.160 Sum_probs=144.3
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCcc-------------ccccCCccccCCCccceee-ecCCcceeecCC-
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-------------LVGVVSAPIFNMSTLKIII-LINNSLFGSLPS- 66 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~~- 66 (204)
|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+. .++.
T Consensus 351 L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l 428 (567)
T 1dce_A 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRSK 428 (567)
T ss_dssp SSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHH
T ss_pred ceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhhh
Confidence 567888888876 778888888888888886654 3344455566677777777 4444321 1110
Q ss_pred -----ccC-CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc
Q 047496 67 -----RIG-LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL 140 (204)
Q Consensus 67 -----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 140 (204)
.+. -....|+.|++++|.++ .+|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.++.+|
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--- 502 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--- 502 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred hhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc---
Confidence 000 01135899999999998 5676 999999999999999999 67889999999999999999998864
Q ss_pred hhhhccccCCCccEEEeeCCcCCCCC-CccccccccCccEEEeeccccccccch---hhhhhhhhc
Q 047496 141 SFLSSLANCKKLRSLNLIGNPLDGFL-PSSIGNLSMSLETLLITNCSISGNIPQ---AISTKYLFQ 202 (204)
Q Consensus 141 ~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~ 202 (204)
.+..+++|++|++++|.+++.. |..+..++ +|+.|++++|.+++..|. .+..++.|+
T Consensus 503 ----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 503 ----GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp ----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred ----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 5788999999999999999766 89999998 999999999999976542 233455554
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=9.7e-21 Score=147.91 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=15.9
Q ss_pred CCcEEEccCcccccc----CCccccCCCccceeeecCCcc
Q 047496 25 NLEALALGMNNLVGV----VSAPIFNMSTLKIIILINNSL 60 (204)
Q Consensus 25 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 60 (204)
+|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 345555555444421 233344444444444444444
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=8.1e-20 Score=149.79 Aligned_cols=146 Identities=20% Similarity=0.277 Sum_probs=83.1
Q ss_pred CccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCC
Q 047496 41 SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120 (204)
Q Consensus 41 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l 120 (204)
+..+..+..|+.|++++|.+. .+|..++ .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 444556666666666666665 5666665 5666666666666666 56666666666666666666666 446666666
Q ss_pred CCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhh
Q 047496 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196 (204)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 196 (204)
++|+.|++++|.+..+| ..+..+++|++|++++|.+++.+|..+.........+++++|.+++.+|..+.
T Consensus 293 ~~L~~L~L~~N~l~~lp------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLP------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp TTCSEEECCSSCCCCCC------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCCCEEECCCCCCCccC------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 66666666666666554 34566666666666666666555555433221222344444444444444433
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=3.1e-17 Score=127.93 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=37.2
Q ss_pred ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEc
Q 047496 49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128 (204)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l 128 (204)
+|++|++++|.+. .+| .+. .+++|++|++++|.+. .+|..+ .+|++|++++|.+++ .| .++.+++|+.|++
T Consensus 132 ~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 4555555555554 244 222 4555555555555544 233221 245555555555443 23 3445555555555
Q ss_pred cCccCCCC
Q 047496 129 AYNNLTSS 136 (204)
Q Consensus 129 ~~~~~~~~ 136 (204)
++|.+..+
T Consensus 203 ~~N~l~~l 210 (454)
T 1jl5_A 203 DNNSLKKL 210 (454)
T ss_dssp CSSCCSSC
T ss_pred CCCcCCcC
Confidence 55544443
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=2.3e-18 Score=116.98 Aligned_cols=135 Identities=23% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCCcEEEccCcccc-ccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEE
Q 047496 24 RNLEALALGMNNLV-GVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLL 102 (204)
Q Consensus 24 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 102 (204)
+++++|++++|.++ +..|..+..+++|++|++++|.+. .+ ..+. .+++|++|++++|.+....+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLP-KLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCC-CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhc-cCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 55666666666665 334444555566666666666554 22 2222 45555555555555543334433445555555
Q ss_pred eccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 103 KLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 103 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
++++|.+++.. +..+..+++|+.|++++|.+...+.. ....+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~--~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY--RESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH--HHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH--HHHHHHhCccCcEecCCCCChh
Confidence 55555544321 13444445555555555544444310 0013344444444444444443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=3.3e-18 Score=116.20 Aligned_cols=134 Identities=25% Similarity=0.297 Sum_probs=115.1
Q ss_pred CcceEEccCCccc-cccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496 1 MLKGIYLGYNKLH-GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79 (204)
Q Consensus 1 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (204)
++++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. .+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCEEe
Confidence 4789999999997 67888889999999999999999876 6688899999999999999854554433 699999999
Q ss_pred cCCCcCccCCC--ccccCCCCCCEEeccCCccccccc---ccccCCCCCcEEEccCccCCCCcc
Q 047496 80 LELNRFSGTIP--SSITNASKLTLLKLGGNTFSGLIP---DTIGNLRNLEWLGLAYNNLTSSTS 138 (204)
Q Consensus 80 l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~ 138 (204)
+++|.+. ..+ ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+...+.
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999998 443 678899999999999999986644 478899999999999998877763
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.6e-17 Score=115.32 Aligned_cols=130 Identities=25% Similarity=0.306 Sum_probs=80.8
Q ss_pred cEEEccCccccccCCccccCCCccceeeecCCcceeecCC-ccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496 27 EALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS-RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105 (204)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (204)
+.++++++.++.. |..+. .++++|++++|.+. .++. ..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 5677777766543 33222 26677777777665 3333 333366777777777777665556666667777777777
Q ss_pred CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC
Q 047496 106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF 165 (204)
Q Consensus 106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 165 (204)
+|.+++..+..+..+++|+.|++++|.+...++ ..+..+++|+++++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-----TSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-----HHhhcCCCCCEEEeCCCCccCc
Confidence 777766555566666777777777776665532 3556666677777777766543
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=9.2e-18 Score=125.85 Aligned_cols=193 Identities=15% Similarity=0.088 Sum_probs=151.5
Q ss_pred CcceEEccCCccc--------------------cccChhccC--------CCCCcEEEccCccccccCCccccCCCccce
Q 047496 1 MLKGIYLGYNKLH--------------------GEIPHEIAN--------LRNLEALALGMNNLVGVVSAPIFNMSTLKI 52 (204)
Q Consensus 1 ~L~~L~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 52 (204)
+|++|+|++|++. ......|.. +++|+.+++.+ .++.+...+|.++++|+.
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 4788999998876 112335667 89999999998 888888888999999999
Q ss_pred eeecCCcceeecCCccCCCCCCccEEEcCCCcC----ccCCCccc-----------------------------------
Q 047496 53 IILINNSLFGSLPSRIGLSLPTVEHLNLELNRF----SGTIPSSI----------------------------------- 93 (204)
Q Consensus 53 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~----------------------------------- 93 (204)
+++.++.+. .+++..+..+.++..+....... .......+
T Consensus 129 l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 129 CQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred EEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999999887 77777776777777776655221 00000000
Q ss_pred ---------------cCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc-EEEe
Q 047496 94 ---------------TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR-SLNL 157 (204)
Q Consensus 94 ---------------~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~l~l 157 (204)
..+++|+++++.+|.++.....+|..+.+|+.++++.| +..++. .+|.++++|+ .+++
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLEL 281 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEE
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEE
Confidence 02689999999999898777778999999999999997 766654 6899999999 9999
Q ss_pred eCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhcc
Q 047496 158 IGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQN 203 (204)
Q Consensus 158 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~ 203 (204)
.. .++...+.+|.... +|+.++++.|.++...+.+|.+++.|+.
T Consensus 282 ~~-~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCD-NLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CT-TCCEECTTTTTTCT-TEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred cc-cceEEchhhhhCCc-cCCEEEeCCCccCccchhhhcCCcchhh
Confidence 98 67656667888888 9999999999999898999999988863
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=9.3e-17 Score=111.45 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=73.1
Q ss_pred cEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccC
Q 047496 27 EALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGG 106 (204)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 106 (204)
+.++++++.++... ..+ .+++++|++++|.+. .+|..+. .+++|+.|++++|.++...+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KGI--PRDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCC-CCC--CCCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665332 222 135666666666665 5554433 566666666666666644444566666666666666
Q ss_pred CcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 107 NTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 107 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
|.++...+..+..+++|+.|++++|.+..++. ..+..+++|+.+++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-----GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-----TTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-----hhhhcCccccEEEeCCCCee
Confidence 66665555556666666666666666655543 24555566666666666553
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=9e-17 Score=111.47 Aligned_cols=130 Identities=24% Similarity=0.272 Sum_probs=112.6
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCc-cccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSA-PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
++++++++++. .+|..+. .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECC
Confidence 57899999886 6776554 3899999999999987664 588999999999999999854455554 89999999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
+|.+....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999966677789999999999999999988889999999999999999998754
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=8.8e-18 Score=111.86 Aligned_cols=132 Identities=23% Similarity=0.256 Sum_probs=105.3
Q ss_pred CCCCcEEEccCcccc-ccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496 23 LRNLEALALGMNNLV-GVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101 (204)
Q Consensus 23 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 101 (204)
.++++.|++++|.++ +..+..+..+++|++|++++|.+. .+ ..+. .+++|++|++++|.+....+..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCC-CCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhh-cCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467899999999988 566777788999999999999887 34 4444 7899999999999998556776777899999
Q ss_pred EeccCCccccc-ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496 102 LKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159 (204)
Q Consensus 102 l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (204)
|++++|.+++. .+..+..+++|+.|++++|.+...+.. ....+..+++|++||+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY--RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH--HHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH--HHHHHHHCCCcccccCCC
Confidence 99999998864 347788999999999999998877530 013577889999998763
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.7e-17 Score=110.52 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=90.3
Q ss_pred CCccceeeecCCcce-eecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496 47 MSTLKIIILINNSLF-GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW 125 (204)
Q Consensus 47 l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 125 (204)
.++++.|++++|.+. +.+|..+. .+++|++|++++|.+... ..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 457788888888776 45665444 678888888888877633 56777778888888888777656666667777888
Q ss_pred EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCC---ccccccccCccEEEee
Q 047496 126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLP---SSIGNLSMSLETLLIT 183 (204)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~L~l~ 183 (204)
|++++|.+...+ .+..+..+++|++|++++|.+++..+ ..+..++ +|+.|+++
T Consensus 93 L~ls~N~i~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLS----TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHH----HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred EECCCCcCCChH----HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 888888776643 12456777778888888887775443 3556666 77777665
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.6e-16 Score=107.72 Aligned_cols=130 Identities=25% Similarity=0.267 Sum_probs=70.0
Q ss_pred CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105 (204)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (204)
.+.+++++++++..... + .++|+.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-I--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTT-C--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCC-C--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35566666665543221 1 245666666666655 4444443355666666666666653333334555666666666
Q ss_pred CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496 106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG 164 (204)
Q Consensus 106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 164 (204)
+|.+++..+..+..+++|+.|++++|.+..++. ..+..+++|+++++++|.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-----GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCH-----HHhcCCcccCEEEecCCCeec
Confidence 666554444445555666666666665555542 234455556666666665553
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.9e-17 Score=133.97 Aligned_cols=162 Identities=25% Similarity=0.290 Sum_probs=108.9
Q ss_pred CCCcEEEccCccccccCCccccCCCccce-----eeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496 24 RNLEALALGMNNLVGVVSAPIFNMSTLKI-----IILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK 98 (204)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (204)
+.++.+++.++.+...... +.....|+. +++..+.+. +++..+..++.|+.|++++|.+. .++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 5678888888887754222 222222222 333333332 34444448999999999999998 88888889999
Q ss_pred CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCcc
Q 047496 99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE 178 (204)
Q Consensus 99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 178 (204)
|++|++++|.++ .+|..++.+++|+.|++++|.+..+| ..+..+++|++|++++|.++ .+|..|..++ +|+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~ 319 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLP------AELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQ 319 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCC------SSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCC
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccC------hhhcCCCCCCEEECCCCCCC-ccChhhhcCC-Ccc
Confidence 999999999999 77888999999999999999999776 56888999999999999998 7888899998 999
Q ss_pred EEEeeccccccccchhhhhh
Q 047496 179 TLLITNCSISGNIPQAISTK 198 (204)
Q Consensus 179 ~L~l~~n~~~~~~~~~~~~l 198 (204)
+|++++|.+++.+|..+..+
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHH
T ss_pred EEeCCCCccCCCChHHHhhc
Confidence 99999999999999988764
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=5.2e-16 Score=106.19 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=111.0
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (204)
+.++++++++. .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence 56888888877 5554443 78999999999999887777889999999999999997 67776655899999999999
Q ss_pred CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCc
Q 047496 83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 137 (204)
|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9998555556789999999999999999766666788999999999999987654
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-15 Score=105.99 Aligned_cols=129 Identities=25% Similarity=0.301 Sum_probs=110.3
Q ss_pred ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496 3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82 (204)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (204)
++++++++++. .+|..+. ++++.|++++|.++. .|..|..+++|++|++++|.++ .+++..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 46888888887 6676553 689999999999984 4577899999999999999998 66666555899999999999
Q ss_pred CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496 83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.-.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999966667899999999999999999976666799999999999999987543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=2.4e-16 Score=107.83 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=49.3
Q ss_pred CccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc
Q 047496 74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR 153 (204)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 153 (204)
+|+.|++++|.+.. + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++. ...+..+++|+
T Consensus 43 ~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD----LDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG----GGGGGGCTTCC
T ss_pred CCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh----hHhhhcCCCCC
Confidence 44444444444432 1 334444445555555554443322333455555555555555544331 02344455555
Q ss_pred EEEeeCCcCCCCCCcc----ccccccCccEEEeeccccc
Q 047496 154 SLNLIGNPLDGFLPSS----IGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 154 ~l~l~~n~~~~~~~~~----~~~~~~~L~~L~l~~n~~~ 188 (204)
++++++|.++ .++.. +..++ +|+.|++++|...
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~-~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVP-QVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCT-TCSEETTEECCHH
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCC-ccceeCCCcCCHH
Confidence 5555555554 23332 44444 5555555555443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=5.5e-16 Score=106.00 Aligned_cols=136 Identities=19% Similarity=0.203 Sum_probs=108.1
Q ss_pred hccCCCCCcEEEccCccccccCCccccCC-CccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCcc-ccCC
Q 047496 19 EIANLRNLEALALGMNNLVGVVSAPIFNM-STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSS-ITNA 96 (204)
Q Consensus 19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 96 (204)
.+..+.+|+.|++++|.++.. +. +..+ ++|+.|++++|.+.+ + +.+. .+++|++|++++|.+. .++.. +..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~-~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRK-L-DGFP-LLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCE-E-CCCC-CCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCc-c-cccc-cCCCCCEEECCCCccc-ccCcchhhcC
Confidence 456788999999999999855 44 4444 499999999999974 4 4444 7899999999999998 44444 4889
Q ss_pred CCCCEEeccCCcccccccc--cccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 97 SKLTLLKLGGNTFSGLIPD--TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 97 ~~L~~l~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
++|++|++++|.+.. .+. .+..+++|+.|++++|.+...+.. ....+..+++|+.+|+++|...
T Consensus 88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~--~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHY--RLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTH--HHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhH--HHHHHHHCCccceeCCCcCCHH
Confidence 999999999999974 454 788999999999999999877531 0124778999999999999864
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.60 E-value=6.4e-18 Score=128.50 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=72.4
Q ss_pred CCCcEEEccCccccccCCcccc-----CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc-----
Q 047496 24 RNLEALALGMNNLVGVVSAPIF-----NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI----- 93 (204)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----- 93 (204)
+.++.|++++|.++......+. ..++|++|++++|.+.+.....+...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555554432222211 113555555555554322222222223445555555555442221211
Q ss_pred cCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc
Q 047496 94 TNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS 169 (204)
Q Consensus 94 ~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 169 (204)
...++|++|++++|.++.. ++..+...++|+.|++++|.+.+... ..+...+..+++|++|++++|.+++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-ELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-HHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-HHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1234455555555554322 12223445555555555555443211 112233444455555555555554322212
Q ss_pred ----ccccccCccEEEeeccccccccchhhh
Q 047496 170 ----IGNLSMSLETLLITNCSISGNIPQAIS 196 (204)
Q Consensus 170 ----~~~~~~~L~~L~l~~n~~~~~~~~~~~ 196 (204)
+...+ +|++|++++|.|++.....++
T Consensus 231 l~~~L~~~~-~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 231 LARAAREHP-SLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHCS-SCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHhCC-CCCEEeccCCCCCHHHHHHHH
Confidence 22223 455555555555544444443
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=2.3e-18 Score=120.04 Aligned_cols=156 Identities=22% Similarity=0.267 Sum_probs=99.6
Q ss_pred ccCCCCCcEEEccCccccccCCc------cccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc
Q 047496 20 IANLRNLEALALGMNNLVGVVSA------PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI 93 (204)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 93 (204)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+. .+| .+. .+++|+.|++++|.+. .++..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchh
Confidence 34445555566666655554443 5666777777777777765 355 343 5677777777777776 556555
Q ss_pred cCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCc-----
Q 047496 94 TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS----- 168 (204)
Q Consensus 94 ~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----- 168 (204)
..+++|++|++++|.+++ .+ .+..+++|+.|++++|.+...+. ...+..+++|+++++++|.+.+..|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~----~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGE----IDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHH----HHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhH----HHHHhcCCCCCEEEecCCccccccccccchH
Confidence 666777777777777764 33 46677777788887777766541 13566777788888888877654333
Q ss_pred -----cccccccCccEEEeeccccc
Q 047496 169 -----SIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 169 -----~~~~~~~~L~~L~l~~n~~~ 188 (204)
.+..++ +|+.|| ++.++
T Consensus 164 ~~~~~~~~~l~-~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 164 EYRIEVVKRLP-NLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHCS-SCSEEC--CGGGT
T ss_pred HHHHHHHHhCC-CcEEEC--CcccC
Confidence 145555 777765 55555
No 131
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=1.9e-17 Score=125.91 Aligned_cols=189 Identities=16% Similarity=0.117 Sum_probs=132.7
Q ss_pred CcceEEccCCccccccChhccC-----CCCCcEEEccCccccccCCcccc-CCCccceeeecCCcceeecCCcc----CC
Q 047496 1 MLKGIYLGYNKLHGEIPHEIAN-----LRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRI----GL 70 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~----~~ 70 (204)
+|+.|++++|.+.......+.. .++|+.|++++|.+.......+. .+++|+.|++++|.+.+.....+ ..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4789999999988544444332 37999999999998765433333 46789999999999864322222 12
Q ss_pred CCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccchh
Q 047496 71 SLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLSF 142 (204)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 142 (204)
..+.|++|++++|.++.. ++..+...++|++|++++|.+.+.. ...+...++|+.|++++|.+++... ..+
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-~~l 231 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-LAL 231 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-HHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-HHH
Confidence 468899999999998742 3344567889999999999987543 4567778899999999999876532 124
Q ss_pred hhccccCCCccEEEeeCCcCCCCCCccccccc----cCccEEE--eeccccccc
Q 047496 143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS----MSLETLL--ITNCSISGN 190 (204)
Q Consensus 143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~----~~L~~L~--l~~n~~~~~ 190 (204)
..++..+++|++|++++|.+++.....+..+. ..++.+. +..+.+...
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 45677789999999999999866555554432 1266666 666666543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.1e-17 Score=116.62 Aligned_cols=147 Identities=21% Similarity=0.317 Sum_probs=117.2
Q ss_pred ccCCCccceeeecCCcceeecCC------ccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccc
Q 047496 44 IFNMSTLKIIILINNSLFGSLPS------RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI 117 (204)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l 117 (204)
+.....++.++++.+.+.+..|. .+. .+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 34455667777777776665554 555 7899999999999998 466 7889999999999999998 567777
Q ss_pred cCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCC-ccccccccCccEEEeeccccccccch---
Q 047496 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLP-SSIGNLSMSLETLLITNCSISGNIPQ--- 193 (204)
Q Consensus 118 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~--- 193 (204)
..+++|+.|++++|.+..++ .+..+++|++|++++|.+++... ..+..++ +|++|++++|.+++..|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~-------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS-------GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH-------HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHHHHHHTTTT
T ss_pred hcCCcCCEEECcCCcCCcCC-------ccccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccccccccccc
Confidence 77899999999999998753 47778999999999999984322 4677777 999999999999877654
Q ss_pred -------hhhhhhhhc
Q 047496 194 -------AISTKYLFQ 202 (204)
Q Consensus 194 -------~~~~l~~l~ 202 (204)
.+..++.|+
T Consensus 162 ~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLK 177 (198)
T ss_dssp HHHHHHHHHHHCSSCS
T ss_pred hHHHHHHHHHhCCCcE
Confidence 366666665
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=5.9e-14 Score=95.33 Aligned_cols=108 Identities=28% Similarity=0.304 Sum_probs=81.0
Q ss_pred ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEc
Q 047496 49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128 (204)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l 128 (204)
..+.++++++.+. .+|..+. +.+++|++.+|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4567888888876 6776553 67888888888887555667778888888888888887666666778888888888
Q ss_pred cCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC
Q 047496 129 AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF 165 (204)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 165 (204)
++|.+..++. ..+..+++|++|++++|.+...
T Consensus 86 ~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPR-----GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCT-----TTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCH-----HHhcCCCCCCEEEeCCCCCCCC
Confidence 8888877753 3567778888888888877643
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=8.3e-14 Score=94.95 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=84.3
Q ss_pred cceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEcc
Q 047496 50 LKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA 129 (204)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~ 129 (204)
-+.++++++.+. .+|..+. +.|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888885 7777653 778889999988885557778888889999998888886655567888888899998
Q ss_pred CccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496 130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG 164 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 164 (204)
+|.+..++. ..+..+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~-----~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPR-----GAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCT-----TTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCH-----HHhccccCCCEEEeCCCCccc
Confidence 888887764 357778888888888888873
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.1e-14 Score=107.58 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=133.2
Q ss_pred CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcc------------------e-
Q 047496 1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL------------------F- 61 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------------~- 61 (204)
+|+.++|.+ .+......+|..+++|+.+++.+|.+....+.+|..+.++..+....... .
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 467888888 77756667799999999999999998878788888877777666544211 0
Q ss_pred -------eecCCc---------------------------cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCC
Q 047496 62 -------GSLPSR---------------------------IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN 107 (204)
Q Consensus 62 -------~~~~~~---------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 107 (204)
+.++.. +...+++|+.+++.+|.+.......|..+.+|+++++.++
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 000000 0002689999999999888566678999999999999987
Q ss_pred cccccccccccCCCCCc-EEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEE
Q 047496 108 TFSGLIPDTIGNLRNLE-WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181 (204)
Q Consensus 108 ~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~ 181 (204)
+....+.+|..+.+|+ .++++. .+..++. .+|.+|++|+++++.+|.+......+|...+ +|+.++
T Consensus 261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-----~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-~L~~ly 327 (329)
T 3sb4_A 261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-----GAFMGCDNLRYVLATGDKITTLGDELFGNGV-PSKLIY 327 (329)
T ss_dssp -CCEECTTTTTTCTTCCEEEEECT-TCCEECT-----TTTTTCTTEEEEEECSSCCCEECTTTTCTTC-CCCEEE
T ss_pred -cceehHHHhhCChhccEEEEEcc-cceEEch-----hhhhCCccCCEEEeCCCccCccchhhhcCCc-chhhhc
Confidence 7767778899999999 999998 6766654 6899999999999999999866677888877 899876
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=3.5e-14 Score=113.47 Aligned_cols=160 Identities=24% Similarity=0.320 Sum_probs=121.3
Q ss_pred cccccChhccCCCCCcEEE-ccCccccccCCc-----ccc--CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496 12 LHGEIPHEIANLRNLEALA-LGMNNLVGVVSA-----PIF--NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN 83 (204)
Q Consensus 12 ~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~-----~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 83 (204)
..+..|..++.+++|+.|+ ++.+.+...... .+. ....|+.|++++|.++ .+|. +. .+++|+.|++++|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N 473 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHN 473 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSS
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-cc-ccccCcEeecCcc
Confidence 3445666777888888888 555543221100 011 1125889999999997 5776 55 8999999999999
Q ss_pred cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
.++ .+|..+..+++|++|++++|.+++ +| .++.+++|+.|++++|.+...+ .+..+..+++|+.|++++|.++
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~----~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA----AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS----TTGGGGGCTTCCEEECTTSGGG
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC----CcHHHhcCCCCCEEEecCCcCC
Confidence 998 889999999999999999999996 56 7999999999999999998873 0167889999999999999998
Q ss_pred CCCCcc---ccccccCccEEEe
Q 047496 164 GFLPSS---IGNLSMSLETLLI 182 (204)
Q Consensus 164 ~~~~~~---~~~~~~~L~~L~l 182 (204)
+..+.. +..++ +|+.|++
T Consensus 547 ~~~~~~~~l~~~lp-~L~~L~l 567 (567)
T 1dce_A 547 QEEGIQERLAEMLP-SVSSILT 567 (567)
T ss_dssp GSSSCTTHHHHHCT-TCSEEEC
T ss_pred CCccHHHHHHHHCc-ccCccCC
Confidence 654422 22355 8888864
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.54 E-value=1.9e-15 Score=121.44 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=68.1
Q ss_pred CcceEEccCCccccc----cChhccCCCCCcEEEccCcccccc----CCccccCCCccceeeecCCcceeecCCccCCCC
Q 047496 1 MLKGIYLGYNKLHGE----IPHEIANLRNLEALALGMNNLVGV----VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSL 72 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 72 (204)
+|++|++++|.+.+. ++..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+. .++..+. .+
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~-~~ 242 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK-AA 242 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH-HC
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh-hh
Confidence 477888888877644 223344677788888887777632 2233445677777777777654 2332222 33
Q ss_pred CCccEEE---------------------------cCCCcCccCCCccccCCCCCCEEeccCCccccccc-ccccCCCCCc
Q 047496 73 PTVEHLN---------------------------LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLE 124 (204)
Q Consensus 73 ~~L~~L~---------------------------l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~ 124 (204)
++|++|+ +.++... .++..+..+++|++|++++|.+++... ..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 3444444 3332221 333444455666666666666443222 2244555555
Q ss_pred EEEcc
Q 047496 125 WLGLA 129 (204)
Q Consensus 125 ~L~l~ 129 (204)
.|+++
T Consensus 322 ~L~L~ 326 (592)
T 3ogk_B 322 VLETR 326 (592)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 55555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=8.8e-14 Score=94.47 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=63.6
Q ss_pred CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105 (204)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (204)
.+.++++++.++.. |..+ .+++++|++++|.+. .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45666666666543 2222 256666666666665 3433333356666666666666663333445666667777777
Q ss_pred CCcccccccccccCCCCCcEEEccCccCCCC
Q 047496 106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
+|.+++..+..+..+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7766655455566677777777777766544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=1.5e-13 Score=93.61 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=73.6
Q ss_pred CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496 26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG 105 (204)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 105 (204)
-+.++++++.++.. |..+. ++|++|++++|.+. .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 36777777777643 33232 67777888877776 4444333477778888888887773333345677788888888
Q ss_pred CCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496 106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138 (204)
Q Consensus 106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 138 (204)
+|.+....+..+..+++|+.|++++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 887775555557778888888888887766543
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=2.1e-15 Score=121.13 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=88.4
Q ss_pred CcceEEccCCc-ccc-ccChhccCCCCCcEEEccCccccccCC----ccccCCCccceeeecCCcce----eecCCccCC
Q 047496 1 MLKGIYLGYNK-LHG-EIPHEIANLRNLEALALGMNNLVGVVS----APIFNMSTLKIIILINNSLF----GSLPSRIGL 70 (204)
Q Consensus 1 ~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~ 70 (204)
+|++|++++|. +.. .++..+..+++|++|++++|.+++... ..+..+++|+.|+++++.+. +.++..+ .
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-R 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-H
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-h
Confidence 38999999986 332 233334588999999999999876532 33456899999999999875 1222222 3
Q ss_pred CCCCccEEEcCCCcCccCCCccccCCCCCCEEecc---------------------------CCcccccccccccCCCCC
Q 047496 71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG---------------------------GNTFSGLIPDTIGNLRNL 123 (204)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~---------------------------~~~~~~~~~~~l~~l~~L 123 (204)
.+++|+.|++.+|.+. ..+..+..+++|++++++ ++.. ...+..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence 6899999999998875 344445555555555554 3211 2344556667788
Q ss_pred cEEEccCccCC
Q 047496 124 EWLGLAYNNLT 134 (204)
Q Consensus 124 ~~L~l~~~~~~ 134 (204)
+.|++++|.+.
T Consensus 296 ~~L~Ls~~~l~ 306 (592)
T 3ogk_B 296 RKLDLLYALLE 306 (592)
T ss_dssp CEEEETTCCCC
T ss_pred cEEecCCCcCC
Confidence 88888887743
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=1.3e-12 Score=100.25 Aligned_cols=170 Identities=12% Similarity=0.130 Sum_probs=81.2
Q ss_pred ChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc------------
Q 047496 17 PHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR------------ 84 (204)
Q Consensus 17 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------ 84 (204)
...|..|.+|+.+++.+|.++......|. ..+|+.+.+..+ +. .++...+..+++|+.+.+..+-
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~ 249 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESG 249 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCC
T ss_pred HHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCC
Confidence 34455566666666665555544444343 344444444422 22 3444444445555555554321
Q ss_pred ---------CccCCCccccCCCCCCEEeccCCccc-----ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC
Q 047496 85 ---------FSGTIPSSITNASKLTLLKLGGNTFS-----GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK 150 (204)
Q Consensus 85 ---------~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 150 (204)
+.......|..+++|+.+.+.++... .....+|..+++|+.+.+.. .+..++. .++.+|+
T Consensus 250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-----~aF~~c~ 323 (401)
T 4fdw_A 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-----GLLGGNR 323 (401)
T ss_dssp CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-----TTTTTCC
T ss_pred ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-----hhhcCCC
Confidence 11112334444555555555444332 22334455555555555552 2333332 4566666
Q ss_pred CccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496 151 KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK 198 (204)
Q Consensus 151 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 198 (204)
+|+.+++..+ ++.....+|... +|+.+++.+|.+....+..|..+
T Consensus 324 ~L~~l~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp SCCEEEECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CccEEEECcc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCC
Confidence 6666666433 332333344333 56777777666655545555444
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=9.9e-15 Score=117.27 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=19.7
Q ss_pred cCCCccEEEeeCCcCCCCCCcc-ccccccCccEEEeecc
Q 047496 148 NCKKLRSLNLIGNPLDGFLPSS-IGNLSMSLETLLITNC 185 (204)
Q Consensus 148 ~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n 185 (204)
.+++|++|++++|.+++..... +..++ +|++|++++|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~-~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCP-KLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCT-TCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCC-CcCEEeCcCc
Confidence 4566667777666654332222 22333 6666666665
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=2e-15 Score=121.26 Aligned_cols=187 Identities=16% Similarity=0.226 Sum_probs=104.7
Q ss_pred CcceEEccCCccccccCh-hccCCCCCcEEEccCccccccC-CccccCCCccceeee-----------------------
Q 047496 1 MLKGIYLGYNKLHGEIPH-EIANLRNLEALALGMNNLVGVV-SAPIFNMSTLKIIIL----------------------- 55 (204)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l----------------------- 55 (204)
+|++|++++|.+.+.... .+..+++|++|++++| +.... +.....+++|++|++
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 478888888886643322 3457778888888776 33211 111123455555555
Q ss_pred -----------cCCcceeecCCccCCCCCCccEEEcC--C----CcCccCCC------ccccCCCCCCEEeccCCccccc
Q 047496 56 -----------INNSLFGSLPSRIGLSLPTVEHLNLE--L----NRFSGTIP------SSITNASKLTLLKLGGNTFSGL 112 (204)
Q Consensus 56 -----------~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~ 112 (204)
..+.+++.....+...+++|+.|++. + +.++ ..+ ..+..+++|++|++++ .+++.
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 33333222222222235666666665 2 2222 111 1134556777777765 44444
Q ss_pred ccccccC-CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccc-ccccCccEEEeeccccccc
Q 047496 113 IPDTIGN-LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG-NLSMSLETLLITNCSISGN 190 (204)
Q Consensus 113 ~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~ 190 (204)
....+.. +++|+.|++++|.+++... ......+++|++|++++|.+++.....+. .++ +|+.|++++|.++..
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGM----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHH----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-GSSEEEEESSCCBHH
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHH----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCCHH
Confidence 3444444 7778888888887644321 11225678888899988888654443333 355 889999999888655
Q ss_pred cchhh
Q 047496 191 IPQAI 195 (204)
Q Consensus 191 ~~~~~ 195 (204)
....+
T Consensus 522 ~~~~l 526 (594)
T 2p1m_B 522 ACKLL 526 (594)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=2.3e-12 Score=98.93 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=102.6
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
|+.+.+..+ +......+|.. .+|+.+.+.. .+......+|.++.+|+.+++.++.+. .++...+ ...+|+.+.+.
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF-VYAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT-TTCCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE-eecccCEEEeC
Confidence 444555443 33233344545 3577777775 556566677888888888888888776 7777777 46788888887
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCcccccc----------------------cccccCCCCCcEEEccCccCCCCccc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLI----------------------PDTIGNLRNLEWLGLAYNNLTSSTSK 139 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------------~~~l~~l~~L~~L~l~~~~~~~~~~~ 139 (204)
.+ +.......|..+++|+.+.+..+ ++... ..+|..+++|+.+.+.++.+...+..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 54 44345566777777888777653 22222 23344445555555544433211000
Q ss_pred chhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496 140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK 198 (204)
Q Consensus 140 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 198 (204)
.....++.+|++|+.+++.. .+......+|.... +|+.+.+..+ ++...+.+|.++
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR-KVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC-SCCEEEECTT-CCEECTTSSSSS
T ss_pred EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC-CccEEEECcc-ccEEcHHhCCCC
Confidence 00113455555555555552 23323333444444 5666666443 444445555555
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=1.6e-11 Score=92.50 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=69.6
Q ss_pred eeeecCC-cceeecCCccCCCCCCccEEEcCC-CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEcc
Q 047496 52 IIILINN-SLFGSLPSRIGLSLPTVEHLNLEL-NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA 129 (204)
Q Consensus 52 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~ 129 (204)
.++.+++ .++ .+|. +. .+++|++|++++ |.+....+..|..+++|++|++++|.+++..+..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 565 5666 44 677777777775 77764444567777777777777777776666677777777777777
Q ss_pred CccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
+|.+..++. ..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~-----~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSW-----KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCS-----TTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCH-----HHcccCC-ceEEEeeCCCcc
Confidence 777776653 2333333 777777777765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=2.7e-11 Score=91.21 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=80.1
Q ss_pred eEEccCC-ccccccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496 4 GIYLGYN-KLHGEIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81 (204)
Q Consensus 4 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 81 (204)
.++.+++ ++. .+|. +..+.+|++|+|++ |.+++..+..|..+++|+.|++++|.+. .+++..+..+++|+.|+++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCC
Confidence 4677776 666 5777 88888999999986 8888888788889999999999999987 4555444488999999999
Q ss_pred CCcCccCCCccccCCCCCCEEeccCCccc
Q 047496 82 LNRFSGTIPSSITNASKLTLLKLGGNTFS 110 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 110 (204)
+|.+. .++........|++|++.+|.+.
T Consensus 89 ~N~l~-~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccc-eeCHHHcccCCceEEEeeCCCcc
Confidence 99988 45544333334999999888775
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.22 E-value=4.7e-12 Score=95.73 Aligned_cols=189 Identities=15% Similarity=0.209 Sum_probs=119.4
Q ss_pred cceEEccCCcccc-c-------cChhccCCCCCcEEEccCccccc---------cCCccccCCCccceeeecCCcceeec
Q 047496 2 LKGIYLGYNKLHG-E-------IPHEIANLRNLEALALGMNNLVG---------VVSAPIFNMSTLKIIILINNSLFGSL 64 (204)
Q Consensus 2 L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~L~l~~~~~~~~~ 64 (204)
++.|.+..+.+.+ . +..++..+++|+.|.+....... .....+..+|+|+.|.++++.-. .+
T Consensus 109 v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l 187 (362)
T 2ra8_A 109 LKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SI 187 (362)
T ss_dssp CSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BC
T ss_pred cceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-ee
Confidence 4567777665442 1 12234467899999987643211 12233456789999999887422 34
Q ss_pred CCccCCCCCCccEEEcCCCcCccCCCcccc--CCCCCCEEeccCC--ccccc-----ccccc--cCCCCCcEEEccCccC
Q 047496 65 PSRIGLSLPTVEHLNLELNRFSGTIPSSIT--NASKLTLLKLGGN--TFSGL-----IPDTI--GNLRNLEWLGLAYNNL 133 (204)
Q Consensus 65 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~--~~~~~-----~~~~l--~~l~~L~~L~l~~~~~ 133 (204)
+. + .+++|++|++..+.+.......+. .+++|++|+++.+ ...+. +...+ ..+++|+.|++.+|.+
T Consensus 188 ~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 188 GK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred cc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 43 2 478999999998887643333343 6789999988532 11111 11122 3578999999999887
Q ss_pred CCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc----cccccCccEEEeeccccccccchhhhh
Q 047496 134 TSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI----GNLSMSLETLLITNCSISGNIPQAIST 197 (204)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~ 197 (204)
.+.... .+ .....+++|++|+++.|.+.+.....+ ..++ +|+.|++++|.++...-..+..
T Consensus 265 ~~~~~~-~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 265 QNVVVE-MF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp HHHHHH-HH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHHHHHHHHH
T ss_pred chHHHH-HH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCcCCHHHHHHHHH
Confidence 643211 11 112357899999999999876433333 3445 8999999999988765555543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=1.8e-11 Score=92.50 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=116.6
Q ss_pred CcceEEccCCccc---------cccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC-C
Q 047496 1 MLKGIYLGYNKLH---------GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG-L 70 (204)
Q Consensus 1 ~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~ 70 (204)
+|+.|.+.+.... ..+...+..+|+|+.|.++++.-.. .+. + .+++|+.|++..+.+.......+. .
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 4778888654321 1244556788999999999873111 222 3 378999999998877533322222 2
Q ss_pred CCCCccEEEcCCC--cCcc-----CCCccc--cCCCCCCEEeccCCcccccccccc---cCCCCCcEEEccCccCCCCcc
Q 047496 71 SLPTVEHLNLELN--RFSG-----TIPSSI--TNASKLTLLKLGGNTFSGLIPDTI---GNLRNLEWLGLAYNNLTSSTS 138 (204)
Q Consensus 71 ~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~ 138 (204)
.+|+|+.|++..+ .... .+...+ ..+++|++|++.+|.+....+..+ ..+++|+.|+++.|.+.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 5899999998532 1110 111222 247899999999998875433333 357899999999998866421
Q ss_pred cchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccc
Q 047496 139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186 (204)
Q Consensus 139 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 186 (204)
. .+...+..+++|+.|+++.|.+++.....+...- ...++++.++
T Consensus 297 ~-~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 297 R-LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp H-HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred H-HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 1 1234456789999999999998866555554421 2557887775
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=8.5e-11 Score=80.76 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=79.9
Q ss_pred CCCCccEEEcCCC-cCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccch
Q 047496 71 SLPTVEHLNLELN-RFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLS 141 (204)
Q Consensus 71 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 141 (204)
..+.|++|++++| .+... +...+...++|++|++++|.+.... ...+...++|+.|++++|.+.+.. ...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-HHH
Confidence 5667777777777 66532 2334455677888888888776432 344556678889999988886542 223
Q ss_pred hhhccccCCCccEEEe--eCCcCCCCCCc----cccccccCccEEEeeccccccc
Q 047496 142 FLSSLANCKKLRSLNL--IGNPLDGFLPS----SIGNLSMSLETLLITNCSISGN 190 (204)
Q Consensus 142 ~~~~~~~~~~L~~l~l--~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~ 190 (204)
+..++...+.|++|++ ++|.+.++... .+...+ +|++|++++|.+...
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSHHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CcCEEeccCCCCChH
Confidence 4567777888999999 88888754333 334445 899999999988643
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=2.1e-09 Score=73.78 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=74.9
Q ss_pred ccCCCccceeeecCC-cceee----cCCccCCCCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCccccc--
Q 047496 44 IFNMSTLKIIILINN-SLFGS----LPSRIGLSLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGL-- 112 (204)
Q Consensus 44 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~-- 112 (204)
+...+.|++|++++| .+... +...+. ..+.|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344556666666666 54321 222222 456677777777776532 223344556788888888877643
Q ss_pred --ccccccCCCCCcEEEc--cCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 113 --IPDTIGNLRNLEWLGL--AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 113 --~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
+...+...+.|+.|++ ++|.+.... ...+...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g-~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHH-HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2455667788889998 778776542 1234466777788999999988875
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.71 E-value=4.7e-07 Score=69.26 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=35.8
Q ss_pred hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496 144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ 202 (204)
Q Consensus 144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~ 202 (204)
.++.+|.+|+.+++..+ ++.....+|.... +|+.+.+..+ ++.....+|.+|..|+
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 45667777777777654 3323344555555 7777777654 5556667777777665
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=1e-08 Score=69.21 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=42.7
Q ss_pred CCCEEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchhhhcccc----CCCccEEEeeCCc-CCCCCCcccc
Q 047496 98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLAN----CKKLRSLNLIGNP-LDGFLPSSIG 171 (204)
Q Consensus 98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~----~~~L~~l~l~~n~-~~~~~~~~~~ 171 (204)
+|++|++++|.++......+..+++|+.|++++|. +++. .+..++. +++|++|++++|. +++.....+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 45555665555554444445556666666666653 3222 1122332 2346666666653 5554444455
Q ss_pred ccccCccEEEeecc
Q 047496 172 NLSMSLETLLITNC 185 (204)
Q Consensus 172 ~~~~~L~~L~l~~n 185 (204)
.++ +|++|++++|
T Consensus 137 ~~~-~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFR-NLKYLFLSDL 149 (176)
T ss_dssp GCT-TCCEEEEESC
T ss_pred cCC-CCCEEECCCC
Confidence 554 6666666666
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=5.7e-07 Score=68.81 Aligned_cols=174 Identities=14% Similarity=0.077 Sum_probs=98.1
Q ss_pred hhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcC------------
Q 047496 18 HEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRF------------ 85 (204)
Q Consensus 18 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------ 85 (204)
.+|..+.+|+.+.+..+ +.......|.++.+|+.+++..+- . .+.+..+..+..|+.+.+..+..
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~-~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNL-K-IIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTC-C-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCc-e-EeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 34666777777777643 233445556666666666665442 1 33333333444444333322110
Q ss_pred ---------ccCCCccccCCCCCCEEeccCCccc--------------------ccccccccCCCCCcEEEccCccCCCC
Q 047496 86 ---------SGTIPSSITNASKLTLLKLGGNTFS--------------------GLIPDTIGNLRNLEWLGLAYNNLTSS 136 (204)
Q Consensus 86 ---------~~~~~~~~~~~~~L~~l~l~~~~~~--------------------~~~~~~l~~l~~L~~L~l~~~~~~~~ 136 (204)
.......+..+..++.+.+..+... ......+..+.+|+.+.+..+ +..+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEE
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-ccee
Confidence 1011223344455555554432111 011234556677777777654 4444
Q ss_pred cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhcc
Q 047496 137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQN 203 (204)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~ 203 (204)
+. .++.+|.+|+.+++..+ +......+|.... +|+.+.+..+ ++.....+|.+|..|+.
T Consensus 312 ~~-----~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 312 GE-----EAFESCTSLVSIDLPYL-VEEIGKRSFRGCT-SLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp CT-----TTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ch-----hhhcCCCCCCEEEeCCc-ccEEhHHhccCCC-CCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 32 57888899999998654 5534456677777 8999999876 77777889998887763
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=4.5e-07 Score=69.40 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=115.1
Q ss_pred cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcce--------------------
Q 047496 2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF-------------------- 61 (204)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------------- 61 (204)
|+.+.+.++. .......|..+.+|+.+.+..+ ++......|..+..|+.+.+..+...
T Consensus 164 L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~ 241 (394)
T 4fs7_A 164 LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF 241 (394)
T ss_dssp CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC
T ss_pred CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCc
Confidence 5556665432 2233345667777777777654 33333334444444444433222100
Q ss_pred eecCCccCCCCCCccEEEcCCCcCc--------------------cCCCccccCCCCCCEEeccCCcccccccccccCCC
Q 047496 62 GSLPSRIGLSLPTVEHLNLELNRFS--------------------GTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121 (204)
Q Consensus 62 ~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~ 121 (204)
..+....+..+..++.+.+..+... ......+..+.+|+.+.+..+ +......+|..+.
T Consensus 242 ~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 242 TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCC
Confidence 1233344445666666666544321 011234556778888887654 5545567899999
Q ss_pred CCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF 201 (204)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 201 (204)
+|+.+++..+ +..++. .++.+|.+|+.+++..+ +......+|.... +|+.+++..+ ++ .+..+|.++..|
T Consensus 321 ~L~~i~lp~~-v~~I~~-----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGK-----RSFRGCTSLSNINFPLS-LRKIGANAFQGCI-NLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp TCCEECCCTT-CCEECT-----TTTTTCTTCCEECCCTT-CCEECTTTBTTCT-TCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred CCCEEEeCCc-ccEEhH-----HhccCCCCCCEEEECcc-ccEehHHHhhCCC-CCCEEEECCC-CE-EhhheecCCCCC
Confidence 9999999754 555543 68999999999999877 5545566777777 9999999876 33 335678888887
Q ss_pred cc
Q 047496 202 QN 203 (204)
Q Consensus 202 ~~ 203 (204)
++
T Consensus 391 ~~ 392 (394)
T 4fs7_A 391 KW 392 (394)
T ss_dssp EE
T ss_pred cE
Confidence 64
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=1.4e-08 Score=68.50 Aligned_cols=93 Identities=9% Similarity=0.046 Sum_probs=68.8
Q ss_pred cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCc-ceeecCCccCCC---CCCccEEEcCCCc-CccCCC
Q 047496 16 IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-LFGSLPSRIGLS---LPTVEHLNLELNR-FSGTIP 90 (204)
Q Consensus 16 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~ 90 (204)
+|.....-..|+.|++++|.++......+..+++|+.|++++|. +++..-..+... .++|++|++++|. ++....
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 44333234579999999999887766777889999999999996 554333334311 2479999999985 775555
Q ss_pred ccccCCCCCCEEeccCCc
Q 047496 91 SSITNASKLTLLKLGGNT 108 (204)
Q Consensus 91 ~~~~~~~~L~~l~l~~~~ 108 (204)
..+..+++|++|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 567788999999999985
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=2.1e-06 Score=65.61 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=65.6
Q ss_pred CCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhh
Q 047496 65 PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLS 144 (204)
Q Consensus 65 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 144 (204)
....+..+..|+.+.+...... .....+..+.+|+.+.+.. .+......+|..+.+|+.+.+..+ +..++. .
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-----~ 328 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD-----D 328 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT-----T
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH-----h
Confidence 3444556677777776654433 4445566677777777653 333344456777777777777653 433332 4
Q ss_pred ccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccc
Q 047496 145 SLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186 (204)
Q Consensus 145 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 186 (204)
+|.+|.+|+++.+..+ ++.....+|.... +|+.+++.++.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~-~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCT-ALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCT-TCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCC-CCCEEEECCce
Confidence 6777777777777543 4423344555555 67777776653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.42 E-value=4.6e-06 Score=63.37 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEE
Q 047496 47 MSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126 (204)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L 126 (204)
...++.+.+...- . .+....+..+..|+.+.+..+ +.......+..+.+++.+.+... +......+|..+.+|+.+
T Consensus 216 ~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 216 GKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp CSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3444444443321 1 333444445566666665543 22233445555666666666433 332334456666667777
Q ss_pred EccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496 127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY 199 (204)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 199 (204)
.+.++.+..++. .++.+|.+|+.+++..+ +......+|.... +|+.+.+..+ ++.....+|.++.
T Consensus 292 ~l~~~~i~~I~~-----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 292 VMDNSAIETLEP-----RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTTCCEECT-----TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccceehh-----hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-CCCEEEECCc-cCEEchhHhhCCC
Confidence 666665555543 45666667777766543 3323334454444 6666666543 4444455555543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=9.6e-06 Score=61.58 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=104.9
Q ss_pred hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496 19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK 98 (204)
Q Consensus 19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 98 (204)
.+..+..++.+.+..+ +.......|..+..|+.+.+..+ ++ .+....+..+..|+.+.+..+ +.......|..+.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3445677888877644 44455667788899999999776 33 677777778899999998764 33245567889999
Q ss_pred CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccc
Q 047496 99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN 172 (204)
Q Consensus 99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 172 (204)
|+.+.+.++.++.....+|..+.+|+.+.+..+ +..++. .++.+|.+|+++.+..+ ++.....+|..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-----~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-----YAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-----HHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 999999888887666788999999999999764 555543 58999999999988654 44233344443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=3.8e-07 Score=65.83 Aligned_cols=41 Identities=32% Similarity=0.371 Sum_probs=18.2
Q ss_pred CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 120 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
+++|+.|++++|.+..++. ++..+..+++|+.|++++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCCCccC
Confidence 4445555555554444321 1122334445555555555544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.9e-07 Score=67.43 Aligned_cols=81 Identities=28% Similarity=0.297 Sum_probs=60.1
Q ss_pred cCCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeec-CCccCCCCCCccEEEcCCCcCccCCC-------
Q 047496 21 ANLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSL-PSRIGLSLPTVEHLNLELNRFSGTIP------- 90 (204)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~------- 90 (204)
..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+.- ...+. .+ +|++|++.+|.+....+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHH
Confidence 4689999999999999874 3455668999999999999987321 11222 33 89999999999875444
Q ss_pred ccccCCCCCCEEe
Q 047496 91 SSITNASKLTLLK 103 (204)
Q Consensus 91 ~~~~~~~~L~~l~ 103 (204)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356778888876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.91 E-value=2e-06 Score=59.11 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCCccEEEcCCC-cCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccch
Q 047496 71 SLPTVEHLNLELN-RFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLS 141 (204)
Q Consensus 71 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 141 (204)
.-+.|++|+++++ .+... +.+.+..-+.|++|++++|.+.+.. ...+..-+.|+.|+++.|.+.... ...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence 4456777777764 55422 2344455567778888777776433 334455677888888888776543 234
Q ss_pred hhhccccCCCccEEEeeCC---cCCCC----CCccccccccCccEEEeeccccc
Q 047496 142 FLSSLANCKKLRSLNLIGN---PLDGF----LPSSIGNLSMSLETLLITNCSIS 188 (204)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~n---~~~~~----~~~~~~~~~~~L~~L~l~~n~~~ 188 (204)
+.+++...+.|++|++++| .+.+. +...+...+ +|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-CcCeEeccCCCcc
Confidence 5566777777888888755 33322 223344455 7888888777554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=2.2e-05 Score=53.91 Aligned_cols=118 Identities=10% Similarity=0.088 Sum_probs=77.2
Q ss_pred cCCCccceeeecCC-cceee----cCCccCCCCCCccEEEcCCCcCccCCC----ccccCCCCCCEEeccCCcccccc--
Q 047496 45 FNMSTLKIIILINN-SLFGS----LPSRIGLSLPTVEHLNLELNRFSGTIP----SSITNASKLTLLKLGGNTFSGLI-- 113 (204)
Q Consensus 45 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~-- 113 (204)
..-+.|+.|+++++ .+.+. +.+.+. .-..|+.|++.+|.+..... ..+..-+.|++|++++|.+....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34567788888774 55321 223333 45678888888888874333 33445678999999999887543
Q ss_pred --cccccCCCCCcEEEccCccCCCCc--ccchhhhccccCCCccEEEeeCCcCC
Q 047496 114 --PDTIGNLRNLEWLGLAYNNLTSST--SKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 114 --~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
..++..-..|+.|+++++....+. ....+..++...+.|++|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 345666778999999865331221 12245567788889999999877543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00067 Score=43.36 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=35.7
Q ss_pred cEEEccCcccc-ccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCc
Q 047496 27 EALALGMNNLV-GVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFS 86 (204)
Q Consensus 27 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 86 (204)
..++.+++.++ ...|..+ -.++++|++++|.++ .++.+.+..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 35666666665 1223222 125777777777776 677666666777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0012 Score=42.13 Aligned_cols=56 Identities=27% Similarity=0.302 Sum_probs=38.6
Q ss_pred EEeccCCccc-ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496 101 LLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163 (204)
Q Consensus 101 ~l~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 163 (204)
.++.++..++ ..+|..+ ..+++.|+|++|.++.++. ..+..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~-----~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPP-----GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCT-----TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccCh-----hhhhhccccCEEEecCCCee
Confidence 5666666665 2334322 2458888888888888865 46777888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.51 E-value=3.7 Score=24.43 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=23.5
Q ss_pred cccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496 112 LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160 (204)
Q Consensus 112 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 160 (204)
....+|..+..|+.+.+..+ ++.+.. .+|.+|.+|+.+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~-----~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYD-----GMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCT-----TSSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcH-----HHHhccCCccEEEEcCC
Confidence 34455666666666666553 333332 45666666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.89 E-value=15 Score=21.78 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=6.0
Q ss_pred ccccCCCccceeee
Q 047496 42 APIFNMSTLKIIIL 55 (204)
Q Consensus 42 ~~~~~l~~L~~L~l 55 (204)
.+|.++.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~i 27 (100)
T 2lz0_A 14 SLFAGNTVIREITV 27 (100)
T ss_dssp CTTTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEc
Confidence 33444444444444
Done!