Query 047497
Match_columns 580
No_of_seqs 229 out of 1727
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1E-108 3E-113 893.3 62.7 538 30-580 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 9E-107 2E-111 870.1 59.8 536 11-580 4-554 (596)
3 PLN02991 oxidoreductase 100.0 2E-104 4E-109 847.8 59.6 494 29-580 25-530 (543)
4 PLN02354 copper ion binding / 100.0 2E-104 5E-109 853.1 59.8 524 12-580 7-538 (552)
5 PLN02792 oxidoreductase 100.0 5E-104 1E-108 845.9 57.9 507 29-580 13-523 (536)
6 PLN02835 oxidoreductase 100.0 2E-103 5E-108 844.0 61.2 497 29-580 26-531 (539)
7 PLN02168 copper ion binding / 100.0 1E-102 3E-107 835.2 59.3 501 29-580 23-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 5E-102 1E-106 823.8 59.3 528 26-580 22-555 (563)
9 PLN02604 oxidoreductase 100.0 2.9E-97 6E-102 805.9 60.5 519 24-580 16-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 5.4E-97 1E-101 801.7 59.2 514 29-580 20-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.9E-96 4E-101 797.6 58.2 512 32-580 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 6.6E-94 1.4E-98 775.2 54.4 492 33-563 9-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 6.2E-79 1.4E-83 657.1 50.8 420 32-561 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 2.4E-75 5.1E-80 625.3 47.5 428 32-561 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 4.7E-74 1E-78 610.3 46.4 402 34-562 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.6E-59 3.5E-64 501.9 43.3 403 44-561 45-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 9.4E-48 2E-52 388.1 25.3 263 30-318 25-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.6E-36 3.5E-41 261.6 12.5 116 38-153 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.3E-29 5E-34 226.2 11.5 107 452-562 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 7.8E-27 1.7E-31 214.2 12.1 149 164-316 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 4.8E-18 1E-22 152.1 12.2 102 47-150 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.6 2.5E-13 5.3E-18 137.8 25.0 247 195-562 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.6 1.2E-13 2.7E-18 150.3 20.8 227 54-296 249-573 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 4.2E-13 9.1E-18 115.9 12.4 109 16-140 8-124 (135)
25 PRK10965 multicopper oxidase; 99.4 4.5E-11 9.8E-16 129.3 21.8 235 50-298 211-511 (523)
26 PRK10883 FtsI repressor; Provi 99.3 2.9E-10 6.3E-15 121.9 19.8 223 49-299 207-457 (471)
27 PLN02835 oxidoreductase 99.2 1.8E-09 4E-14 117.3 23.9 255 51-316 191-513 (539)
28 TIGR03389 laccase laccase, pla 99.2 3.7E-09 8E-14 115.8 25.7 240 52-295 167-505 (539)
29 COG2132 SufI Putative multicop 99.1 1.6E-09 3.5E-14 116.5 18.0 233 48-297 186-436 (451)
30 PLN02168 copper ion binding / 98.9 2E-07 4.3E-12 101.4 22.8 240 51-295 188-501 (545)
31 TIGR03388 ascorbase L-ascorbat 98.9 2E-07 4.4E-12 102.2 22.1 229 63-295 203-509 (541)
32 TIGR03390 ascorbOXfungal L-asc 98.9 1.3E-07 2.8E-12 103.4 20.5 240 52-295 172-517 (538)
33 PLN02604 oxidoreductase 98.9 9.8E-09 2.1E-13 112.8 10.6 92 456-564 55-146 (566)
34 PLN02792 oxidoreductase 98.8 1.3E-06 2.8E-11 95.0 26.3 241 50-295 178-489 (536)
35 PLN02354 copper ion binding / 98.8 1.9E-07 4.2E-12 101.8 19.8 239 52-295 190-504 (552)
36 PLN02991 oxidoreductase 98.8 4E-07 8.7E-12 98.8 22.1 240 51-295 190-496 (543)
37 PF07731 Cu-oxidase_2: Multico 98.7 1.3E-07 2.8E-12 84.6 11.0 79 214-296 32-121 (138)
38 PF07732 Cu-oxidase_3: Multico 98.7 9E-08 2E-12 82.7 8.2 91 455-563 25-116 (117)
39 PLN02191 L-ascorbate oxidase 98.6 3.2E-06 6.9E-11 93.1 20.7 234 56-295 219-532 (574)
40 PRK02710 plastocyanin; Provisi 98.4 3.4E-06 7.3E-11 73.2 12.1 74 62-150 46-119 (119)
41 PLN00044 multi-copper oxidase- 98.4 2.7E-05 5.7E-10 85.5 21.2 228 63-295 217-519 (596)
42 PF13473 Cupredoxin_1: Cupredo 98.3 2.1E-06 4.6E-11 72.7 7.2 74 59-149 31-104 (104)
43 TIGR02656 cyanin_plasto plasto 98.2 5.6E-06 1.2E-10 69.4 8.6 84 60-150 14-99 (99)
44 TIGR02657 amicyanin amicyanin. 98.1 2.2E-05 4.8E-10 63.4 8.8 74 62-150 10-83 (83)
45 PF00127 Copper-bind: Copper b 98.1 1.4E-05 3.1E-10 66.9 7.3 83 62-150 16-99 (99)
46 TIGR03095 rusti_cyanin rusticy 98.0 3.1E-05 6.8E-10 69.6 9.0 90 456-561 52-148 (148)
47 KOG1263 Multicopper oxidases [ 97.9 0.00089 1.9E-08 72.9 20.1 241 51-295 192-521 (563)
48 PF00394 Cu-oxidase: Multicopp 97.9 3.7E-05 8E-10 70.5 8.2 94 455-562 59-157 (159)
49 PRK02888 nitrous-oxide reducta 97.9 5.1E-05 1.1E-09 82.0 10.0 98 44-152 534-635 (635)
50 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00059 1.3E-08 61.5 13.0 102 52-154 73-189 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.6 0.00066 1.4E-08 62.6 10.9 104 52-156 74-192 (196)
52 TIGR02656 cyanin_plasto plasto 97.5 0.00042 9E-09 58.0 7.4 82 457-561 18-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.4 0.0013 2.8E-08 56.4 9.2 76 62-153 14-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.3 0.0012 2.6E-08 57.1 8.7 75 63-151 54-128 (128)
55 TIGR03096 nitroso_cyanin nitro 97.1 0.0023 5E-08 55.8 7.7 59 457-546 62-120 (135)
56 TIGR03102 halo_cynanin halocya 97.0 0.0045 9.7E-08 52.9 8.6 76 60-150 39-115 (115)
57 PF00127 Copper-bind: Copper b 96.8 0.0051 1.1E-07 51.4 7.5 83 456-561 17-99 (99)
58 PRK02888 nitrous-oxide reducta 96.5 0.0097 2.1E-07 64.8 9.1 78 457-562 556-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.1 0.021 4.6E-07 48.1 6.9 61 457-548 36-96 (104)
60 PRK02710 plastocyanin; Provisi 95.9 0.03 6.4E-07 48.5 7.0 72 457-561 48-119 (119)
61 TIGR02375 pseudoazurin pseudoa 95.2 0.13 2.9E-06 44.0 8.7 36 524-563 54-89 (116)
62 COG4454 Uncharacterized copper 94.0 0.097 2.1E-06 46.5 5.0 93 458-561 65-157 (158)
63 COG4454 Uncharacterized copper 93.8 0.77 1.7E-05 40.9 10.3 88 59-151 59-158 (158)
64 PF00116 COX2: Cytochrome C ox 93.6 0.5 1.1E-05 40.9 8.7 73 62-149 45-119 (120)
65 TIGR02695 azurin azurin. Azuri 92.9 0.52 1.1E-05 40.5 7.5 87 62-148 15-124 (125)
66 TIGR03102 halo_cynanin halocya 92.9 0.61 1.3E-05 39.9 8.1 73 457-561 43-115 (115)
67 TIGR02657 amicyanin amicyanin. 91.8 1 2.3E-05 36.0 7.8 72 457-561 12-83 (83)
68 PRK10378 inactive ferrous ion 91.4 1.4 3.1E-05 45.7 10.1 79 59-153 40-119 (375)
69 PF06525 SoxE: Sulfocyanin (So 91.0 2.9 6.3E-05 39.0 10.6 101 453-563 83-188 (196)
70 PF00116 COX2: Cytochrome C ox 89.5 3.7 8E-05 35.5 9.6 74 455-560 45-119 (120)
71 PF12690 BsuPI: Intracellular 88.2 1 2.2E-05 36.0 4.9 58 64-132 17-80 (82)
72 PF12690 BsuPI: Intracellular 86.7 7.1 0.00015 31.2 8.9 68 225-293 3-82 (82)
73 TIGR02866 CoxB cytochrome c ox 86.5 3 6.6E-05 39.6 8.0 76 456-563 117-193 (201)
74 COG1470 Predicted membrane pro 85.6 49 0.0011 35.2 16.4 178 65-298 278-470 (513)
75 TIGR03094 sulfo_cyanin sulfocy 85.0 12 0.00027 34.3 10.4 100 454-563 83-187 (195)
76 TIGR02695 azurin azurin. Azuri 84.8 3.1 6.7E-05 35.9 6.2 80 215-294 15-111 (125)
77 COG3794 PetE Plastocyanin [Ene 84.7 4.5 9.9E-05 35.2 7.3 74 457-562 55-128 (128)
78 TIGR02866 CoxB cytochrome c ox 84.6 3.7 8E-05 39.0 7.5 76 63-153 117-194 (201)
79 COG1622 CyoA Heme/copper-type 79.1 7.6 0.00016 38.1 7.5 77 63-154 137-215 (247)
80 COG4263 NosZ Nitrous oxide red 69.9 6.3 0.00014 41.3 4.5 77 63-150 558-636 (637)
81 PF01835 A2M_N: MG2 domain; I 67.1 16 0.00034 30.0 5.8 72 220-295 11-85 (99)
82 PF05506 DUF756: Domain of unk 66.6 48 0.001 26.7 8.4 63 62-133 8-73 (89)
83 COG1622 CyoA Heme/copper-type 66.1 21 0.00045 35.0 7.1 77 455-563 136-213 (247)
84 PF05938 Self-incomp_S1: Plant 59.7 30 0.00065 29.1 6.2 69 74-152 2-71 (110)
85 PF07705 CARDB: CARDB; InterP 57.3 97 0.0021 24.9 8.9 67 219-295 14-83 (101)
86 COG2967 ApaG Uncharacterized p 55.4 14 0.00029 31.4 3.2 67 74-154 33-107 (126)
87 MTH00047 COX2 cytochrome c oxi 55.0 1E+02 0.0023 29.0 9.5 76 456-563 116-192 (194)
88 PF10633 NPCBM_assoc: NPCBM-as 54.9 99 0.0021 24.0 8.1 65 221-294 2-74 (78)
89 MTH00140 COX2 cytochrome c oxi 51.3 62 0.0013 31.4 7.6 77 455-563 139-216 (228)
90 PF04151 PPC: Bacterial pre-pe 51.1 67 0.0015 24.3 6.4 65 216-294 5-69 (70)
91 MTH00047 COX2 cytochrome c oxi 48.3 72 0.0016 30.1 7.2 62 217-299 117-178 (194)
92 TIGR01433 CyoA cytochrome o ub 46.8 55 0.0012 31.7 6.4 63 216-299 139-201 (226)
93 MTH00140 COX2 cytochrome c oxi 45.3 66 0.0014 31.2 6.8 63 216-299 140-202 (228)
94 PF07691 PA14: PA14 domain; I 44.1 1.6E+02 0.0035 25.5 8.8 61 218-283 54-121 (145)
95 COG1188 Ribosome-associated he 41.3 19 0.00042 29.7 2.0 35 53-87 35-69 (100)
96 TIGR03079 CH4_NH3mon_ox_B meth 40.8 1.7E+02 0.0037 30.2 8.9 16 108-123 337-352 (399)
97 TIGR01432 QOXA cytochrome aa3 40.0 73 0.0016 30.6 6.1 62 217-299 131-192 (217)
98 PF11142 DUF2917: Protein of u 39.8 88 0.0019 23.5 5.2 46 218-275 2-47 (63)
99 MTH00008 COX2 cytochrome c oxi 39.7 97 0.0021 30.0 6.9 63 216-299 140-202 (228)
100 PF04379 DUF525: Protein of un 39.6 49 0.0011 26.9 4.1 49 225-276 15-67 (90)
101 PF14344 DUF4397: Domain of un 38.7 1.7E+02 0.0037 24.8 7.7 21 227-247 3-24 (122)
102 PTZ00047 cytochrome c oxidase 37.2 2.1E+02 0.0046 26.0 8.1 75 456-562 73-148 (162)
103 PRK13254 cytochrome c-type bio 37.1 53 0.0011 29.5 4.3 82 18-104 19-101 (148)
104 PRK10378 inactive ferrous ion 36.7 1.5E+02 0.0032 31.1 8.0 64 214-295 42-105 (375)
105 MTH00098 COX2 cytochrome c oxi 35.3 1.2E+02 0.0027 29.3 6.9 62 217-299 141-202 (227)
106 PF06030 DUF916: Bacterial pro 35.1 1.7E+02 0.0036 25.2 7.0 15 109-123 87-101 (121)
107 MTH00129 COX2 cytochrome c oxi 34.6 1.1E+02 0.0024 29.7 6.4 62 217-299 141-202 (230)
108 PRK05461 apaG CO2+/MG2+ efflux 33.7 90 0.002 27.2 5.1 49 225-276 32-84 (127)
109 PTZ00047 cytochrome c oxidase 33.5 1.9E+02 0.0042 26.3 7.2 62 217-299 74-135 (162)
110 PF10989 DUF2808: Protein of u 32.2 1.2E+02 0.0025 27.1 5.8 34 267-300 98-132 (146)
111 smart00758 PA14 domain in bact 32.2 2.9E+02 0.0063 23.7 8.4 61 218-283 52-113 (136)
112 PRK10525 cytochrome o ubiquino 32.1 98 0.0021 31.6 5.8 62 217-299 152-213 (315)
113 PF11322 DUF3124: Protein of u 31.5 2.3E+02 0.005 24.6 7.0 53 227-283 28-80 (125)
114 PRK05461 apaG CO2+/MG2+ efflux 31.5 69 0.0015 27.9 4.0 20 100-120 66-85 (127)
115 COG3354 FlaG Putative archaeal 31.3 3.8E+02 0.0082 23.9 9.5 64 224-294 70-141 (154)
116 PF10989 DUF2808: Protein of u 31.0 54 0.0012 29.3 3.4 27 521-547 98-128 (146)
117 cd00918 Der-p2_like Several gr 30.8 1.9E+02 0.0042 24.8 6.6 67 55-123 13-87 (120)
118 MTH00185 COX2 cytochrome c oxi 30.3 1.8E+02 0.0039 28.2 7.1 61 217-298 141-201 (230)
119 TIGR01433 CyoA cytochrome o ub 29.9 1.7E+02 0.0038 28.2 6.9 75 457-563 140-215 (226)
120 COG4633 Plastocyanin domain co 29.4 2.5E+02 0.0054 27.0 7.4 91 44-155 78-173 (272)
121 cd00916 Npc2_like Niemann-Pick 29.0 2.1E+02 0.0046 24.6 6.6 62 63-124 22-92 (123)
122 PF04744 Monooxygenase_B: Mono 28.8 48 0.001 34.1 2.9 53 100-152 72-129 (381)
123 PRK13202 ureB urease subunit b 28.4 1.5E+02 0.0033 24.6 5.2 59 64-122 12-83 (104)
124 MTH00129 COX2 cytochrome c oxi 27.6 2.9E+02 0.0063 26.8 8.0 76 455-562 139-215 (230)
125 MTH00008 COX2 cytochrome c oxi 25.0 3.1E+02 0.0067 26.6 7.6 76 455-562 139-215 (228)
126 MTH00117 COX2 cytochrome c oxi 24.9 2.7E+02 0.0059 26.9 7.3 62 217-299 141-202 (227)
127 PF14451 Ub-Mut7C: Mut7-C ubiq 24.8 59 0.0013 25.9 2.2 28 49-76 47-74 (81)
128 PF11614 FixG_C: IG-like fold 24.2 1.9E+02 0.0041 24.4 5.5 50 225-283 34-85 (118)
129 COG3241 Azurin [Energy product 23.8 1.1E+02 0.0023 26.3 3.5 41 254-294 91-135 (151)
130 MTH00051 COX2 cytochrome c oxi 23.3 2.5E+02 0.0054 27.3 6.7 63 216-299 144-206 (234)
131 PF14392 zf-CCHC_4: Zinc knuck 23.3 99 0.0022 21.8 2.9 32 521-552 14-45 (49)
132 MTH00154 COX2 cytochrome c oxi 23.0 3E+02 0.0065 26.6 7.1 63 216-299 140-202 (227)
133 MTH00076 COX2 cytochrome c oxi 22.6 2.8E+02 0.0061 26.8 6.9 61 217-298 141-201 (228)
134 TIGR03396 PC_PLC phospholipase 22.1 3.8E+02 0.0082 30.7 8.6 67 61-136 592-661 (690)
135 MTH00023 COX2 cytochrome c oxi 21.9 3.7E+02 0.0081 26.2 7.6 76 455-562 150-226 (240)
136 PRK07440 hypothetical protein; 21.4 82 0.0018 24.2 2.3 25 51-75 35-63 (70)
137 PF11611 DUF4352: Domain of un 21.3 4.4E+02 0.0096 22.0 7.3 66 225-293 39-112 (123)
138 TIGR03711 acc_sec_asp3 accesso 21.0 5E+02 0.011 22.9 7.3 55 62-123 16-73 (135)
139 cd07884 RHD-n_Relish N-termina 21.0 3.6E+02 0.0077 24.5 6.5 59 63-123 41-102 (159)
140 PRK13159 cytochrome c-type bio 20.6 1.5E+02 0.0033 26.8 4.1 78 21-104 22-102 (155)
141 PF06016 Reovirus_L2: Reovirus 20.6 1E+03 0.023 29.2 11.8 63 111-175 1083-1152(1289)
142 TIGR01432 QOXA cytochrome aa3 20.5 3.3E+02 0.007 26.1 6.8 75 457-563 131-206 (217)
143 PF10636 hemP: Hemin uptake pr 20.3 1.7E+02 0.0037 19.7 3.2 19 216-234 14-32 (38)
144 TIGR02988 YaaA_near_RecF S4 do 20.2 57 0.0012 23.9 1.2 23 53-75 35-58 (59)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.3e-108 Score=893.34 Aligned_cols=538 Identities=71% Similarity=1.262 Sum_probs=439.4
Q ss_pred ceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCcccc
Q 047497 30 GVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQC 109 (580)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~ 109 (580)
+++|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEECCCccceeEeeCcccccccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhhcC
Q 047497 110 PIQTGQSYVYNFTIVGQRGTLWWHAHLSWLRSTLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQTG 189 (580)
Q Consensus 110 ~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~ 189 (580)
+|+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+.++++...|+|++|+++||++.+...++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999998889999999999987766776677899999999999998887766655555
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeC
Q 047497 190 GGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIA 269 (580)
Q Consensus 190 ~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~ 269 (580)
..+..++.++|||+.++++.|+....+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.+++|.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55567799999999988889988788899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCCCCCccccccc
Q 047497 270 PGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPALNDTSFATSF 349 (580)
Q Consensus 270 pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 349 (580)
+||||||+|++++.+ |+|||++.+...+...+......|+|+|++... ...+.. +..+...+......+
T Consensus 241 ~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~--------~~~p~~-~~~~~~~~~~~~~~~ 309 (539)
T TIGR03389 241 PGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSN--------SAKPIL-PTLPAYNDTAAATNF 309 (539)
T ss_pred CCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCC--------CCCCCC-CCCCCCCchhhhhHH
Confidence 999999999999876 999999986544432234467899999988652 111111 222222222111111
Q ss_pred ccccccccCCCCCCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhhhhhcCCccCccCC
Q 047497 350 TNKLRSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQAHFTGKSYGVYNP 429 (580)
Q Consensus 350 ~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~ 429 (580)
...++.+..+.++..+|..+++++++.+.+....... ..+...++..+.|++|+++|..|.+|+|.+.+.+++ |.+..
T Consensus 310 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~-~~~~~ 387 (539)
T TIGR03389 310 SNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGIS-GVFTT 387 (539)
T ss_pred HhhcccccccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCCcchhhhhhcccC-Ccccc
Confidence 1123343333334445556677776666543211100 001112345688999999999999898887776544 55666
Q ss_pred CCCCCCCeecccCCCC-CCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCC
Q 047497 430 DFPTSPLIAFNYTGTP-PNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTK 508 (580)
Q Consensus 430 ~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~ 508 (580)
+|++.+|..|++++.. +.+...+.+++++.++.|++|||+|+|........||||||||+||||++|.|.|+.......
T Consensus 388 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~ 467 (539)
T TIGR03389 388 DFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAK 467 (539)
T ss_pred CCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccc
Confidence 7777788877766532 112223446788999999999999999643234589999999999999999999987654457
Q ss_pred CCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 047497 509 FNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKHPNQKLPPPPADLPQC 580 (580)
Q Consensus 509 ~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 580 (580)
+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+.++.+..++++++|..+|+|
T Consensus 468 ~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 468 FNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 899999999999999999999999999999999999999999999999999988888788999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=8.9e-107 Score=870.08 Aligned_cols=536 Identities=27% Similarity=0.448 Sum_probs=428.5
Q ss_pred HHHHHHHHHHHhhcccc---ccceeEEEEEEEEEEeeecCC--ceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCc
Q 047497 11 FLGVICSFVTLCLLAEP---ALGVTRHYKFDIKLQNVTRLC--NTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNI 85 (580)
Q Consensus 11 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~ 85 (580)
.|+++| +++.+++++. +.+++++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+|+++|
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~t 82 (596)
T PLN00044 4 ILFLLL-LAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPL 82 (596)
T ss_pred HHHHHH-HHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCc
Confidence 455555 3444444332 337789999999999999999 5568999999999999999999999999999999999
Q ss_pred eEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCC-
Q 047497 86 SIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPY- 163 (580)
Q Consensus 86 ~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d- 163 (580)
+|||||++|+.++|+||+++ |||||+||++|+|+|++++++||||||+|...|+ +||+|+|||++++..++|+...+
T Consensus 83 tIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~ 161 (596)
T PLN00044 83 LLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDG 161 (596)
T ss_pred cEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcc
Confidence 99999999999999999988 9999999999999999877999999999999988 79999999999876666665444
Q ss_pred CceeeeeeccccCChHHHHHHhhhcCCCCCCCCeEEEcCCCCCCCCCC----CCceeEEEEeCCCEEEEEEEecCCCCeE
Q 047497 164 KEVPIIFGEWFKADPETIISQALQTGGGPNVSDAYTINGLPGPLYNCS----AKDTFKLKVKPGKTYLLRLINAALNDEL 239 (580)
Q Consensus 164 ~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~----~~~~~~l~v~~G~~~rlRliN~~~~~~~ 239 (580)
+|.+|+++||++.+...+ ......|..+..++.++|||+....++|. +...+.++|++|++|||||||++....+
T Consensus 162 ~e~~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~ 240 (596)
T PLN00044 162 GDITLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSL 240 (596)
T ss_pred cceEEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceE
Confidence 799999999999886654 33444454455679999999965445554 3345689999999999999999999999
Q ss_pred EEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc-cCCCCCCCCcceEEEEEEecCC
Q 047497 240 FFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY-VTGQGTFDNSTVAGILEYEKPL 318 (580)
Q Consensus 240 ~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~-~~~~~~~~~~~~~ail~y~~~~ 318 (580)
.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++ +++|||++... ..+. .+++....|||+|+++.
T Consensus 241 ~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~ 318 (596)
T PLN00044 241 NFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQ 318 (596)
T ss_pred EEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCC
Confidence 999999999999999999999999999999999999999999875 24899998642 2221 24566788999998764
Q ss_pred CCcccCCCCCCCCCcCCCCCC-CCCcccccccccccccccCCCCCCCCCCCccceEEEEeccCcc-cCCCCCcccCCCCC
Q 047497 319 NFHLSSNSIKNLPLFKPVLPA-LNDTSFATSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTS-PCQSNQTCQGPNGT 396 (580)
Q Consensus 319 ~~~~~~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 396 (580)
. . ...+ . |..+. +.+.....++...++.+..++.+.+.|+..+....+.+..... .+. ......+
T Consensus 319 ~------~-~~~~-~-P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~g 385 (596)
T PLN00044 319 G------P-ASGP-L-PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM----APELIDG 385 (596)
T ss_pred C------C-CCCC-C-CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc----cccccCC
Confidence 2 1 1111 2 44443 4444433333344554444433344444444444444332110 000 0000113
Q ss_pred eeeeeecceeeecCchhhhhhhhcCCccCccCCCCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCC
Q 047497 397 MFQASVNNISFVMPTTALLQAHFTGKSYGVYNPDFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSIL 476 (580)
Q Consensus 397 ~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~ 476 (580)
++.|+|||++|..|++|+|.+++.+++ |.|..+|++.+|.. .....+.++.++.|++|||+|+|..
T Consensus 386 ~~~~s~Nnvsf~~p~~p~L~a~~~~~~-gv~~~~fp~~pp~~-----------~~~~~t~v~~~~~n~~VeiV~qn~~-- 451 (596)
T PLN00044 386 KLRATLNEISYIAPSTPLMLAQIFNVP-GVFKLDFPNHPMNR-----------LPKLDTSIINGTYKGFMEIIFQNNA-- 451 (596)
T ss_pred eEEEEECcccCCCCCCcchhhhhccCC-CcccCCCCCCCCcc-----------ccccCceEEEcCCCCEEEEEEeCCC--
Confidence 688999999999999999988777665 88888898877731 1223678899999999999999963
Q ss_pred CCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceE
Q 047497 477 GAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKM 556 (580)
Q Consensus 477 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~ 556 (580)
...||||||||+|+||++|.|.|++. .+..+|+.||++||||.|+++||++|||++||||+|+|||||+.|+..||.+
T Consensus 452 -~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~ 529 (596)
T PLN00044 452 -TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEV 529 (596)
T ss_pred -CCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcE
Confidence 36999999999999999999999975 4568999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCC-CCCCCCCCCCCCCC
Q 047497 557 AWIVLDGKHP-NQKLPPPPADLPQC 580 (580)
Q Consensus 557 ~~~V~~~~~~-~~~~~~~p~~~~~c 580 (580)
+|.|+++.+. .+++++||.+++.|
T Consensus 530 ~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 530 YINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred EEEEecCCCCccccccCCCcccCcc
Confidence 9999999876 78999999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=2e-104 Score=847.78 Aligned_cols=494 Identities=28% Similarity=0.484 Sum_probs=399.8
Q ss_pred cceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccc
Q 047497 29 LGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQ 108 (580)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 108 (580)
.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+++ ||
T Consensus 25 ~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQ 103 (543)
T PLN02991 25 EDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TT 103 (543)
T ss_pred cCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhh
Q 047497 109 CPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQ 187 (580)
Q Consensus 109 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~ 187 (580)
|||+||++|+|+|++++++||||||+|.+.|+ +||+|+|||+++++.+.|+..+|+|++++|+||+++....+... ..
T Consensus 104 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~~ 182 (543)
T PLN02991 104 CPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-LD 182 (543)
T ss_pred CccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-hh
Confidence 99999999999999867999999999999887 79999999999876666666678899999999999886654333 33
Q ss_pred cCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEE
Q 047497 188 TGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLL 267 (580)
Q Consensus 188 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~ 267 (580)
.+.....++.+||||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.
T Consensus 183 ~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~ 253 (543)
T PLN02991 183 NGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLD 253 (543)
T ss_pred cCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEE
Confidence 444455789999999963 25799999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCCCCCccc--
Q 047497 268 IAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPALNDTSF-- 345 (580)
Q Consensus 268 l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~-- 345 (580)
|++||||||+|+++++. |+|||++...... ......|||+|+++.. + ...+ . |..+.......
T Consensus 254 i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~------~-~~~~-~-p~~p~~~~~~~~~ 318 (543)
T PLN02991 254 VHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAG------P-VSGP-I-PDGPIQLSWSFDQ 318 (543)
T ss_pred EcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCC------C-CCCC-C-CCCCccccccccc
Confidence 99999999999999987 9999998763222 2346789999998642 0 1001 1 21111111100
Q ss_pred ccccccccccccCCCCCCCCCCCccc--------eEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhhh
Q 047497 346 ATSFTNKLRSLASTQFPANVPQNVDR--------RFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQA 417 (580)
Q Consensus 346 ~~~~~~~l~~l~~~~~p~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~ 417 (580)
.......|.+ ..+...|...+. .+.+...+.. ..+++.|++|+.+|..|++|+|.+
T Consensus 319 ~~~~~~~l~p----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~iN~~s~~~p~~p~L~~ 382 (543)
T PLN02991 319 ARAIKTNLTA----SGPRPNPQGSYHYGKINITRTIRLANSAGN------------IEGKQRYAVNSASFYPADTPLKLA 382 (543)
T ss_pred hhhhhhcccC----CCCCCCCCccccccccccceeEEEeecccc------------cCceEEEEECCCccCCCCCChhhh
Confidence 0011112221 112222322221 1212111110 113578999999999999999888
Q ss_pred hhcCCccCccCCC-CCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEec
Q 047497 418 HFTGKSYGVYNPD-FPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQG 496 (580)
Q Consensus 418 ~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g 496 (580)
++.+++ |.|..+ +++.++.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 383 ~~~~~~-g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G 447 (543)
T PLN02991 383 DYFKIA-GVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGME 447 (543)
T ss_pred hhhccc-CccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeC
Confidence 777655 666554 44443311 1123467889999999999999964 3699999999999999999
Q ss_pred cCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCC
Q 047497 497 FGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKHPNQKLPPPPAD 576 (580)
Q Consensus 497 ~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~ 576 (580)
.|.|++. ....+|+.||++||||.||++||++|||++||||+|+|||||..|+..||..++.|.++.+..+++++||.+
T Consensus 448 ~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~ 526 (543)
T PLN02991 448 LGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKN 526 (543)
T ss_pred CCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcc
Confidence 9999976 456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 047497 577 LPQC 580 (580)
Q Consensus 577 ~~~c 580 (580)
+++|
T Consensus 527 ~~~C 530 (543)
T PLN02991 527 ALLC 530 (543)
T ss_pred cCcc
Confidence 9999
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.2e-104 Score=853.10 Aligned_cols=524 Identities=25% Similarity=0.431 Sum_probs=408.6
Q ss_pred HHHHHHHHHHhhccccccceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecC
Q 047497 12 LGVICSFVTLCLLAEPALGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHG 91 (580)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG 91 (580)
|.+++++++.+++...+.+++++|+|+|++..+++||..+.+++||||+|||+||+++||+|+|+|+|+|+++|+|||||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHG 86 (552)
T PLN02354 7 LAVLLCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSG 86 (552)
T ss_pred HHHHHHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCccccccc
Confidence 33444444444544455578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeee
Q 047497 92 IRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIF 170 (580)
Q Consensus 92 ~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~ 170 (580)
++|..++|+||+|+ |||||+||++|+|+|++.+++||||||||...|+ +||+|+|||+++++.+.++..+|+|+++++
T Consensus 87 i~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l 165 (552)
T PLN02354 87 IQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLI 165 (552)
T ss_pred ccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEe
Confidence 99999999999999 9999999999999999767899999999999998 899999999998766666766788999999
Q ss_pred eccccCChHHHHHHhhhcCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeE
Q 047497 171 GEWFKADPETIISQALQTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTV 250 (580)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v 250 (580)
+|||++....+. .....+..+..++.+||||+....+. ...+.++|++||+|||||||+|....+.|+|+||+|+|
T Consensus 166 ~Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tV 241 (552)
T PLN02354 166 GDWYTKSHTALK-KFLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKL 241 (552)
T ss_pred eeeccCCHHHHH-HHHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEE
Confidence 999998866543 33344443446799999999753321 23578999999999999999999999999999999999
Q ss_pred EecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCC
Q 047497 251 VEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNL 330 (580)
Q Consensus 251 ia~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~ 330 (580)
||+||.+++|..++.|.|++||||||+|++++++ |+|||++.....+ ......|+|+|+++.. ...
T Consensus 242 Ia~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~--------~~~ 307 (552)
T PLN02354 242 VEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKG--------PAS 307 (552)
T ss_pred EEeCCcccCCcceeEEEEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCC--------CCC
Confidence 9999999999999999999999999999999876 9999998742221 2356789999988652 111
Q ss_pred CCcCCCCCCCC--CcccccccccccccccCCCCCCCC----CCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecc
Q 047497 331 PLFKPVLPALN--DTSFATSFTNKLRSLASTQFPANV----PQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNN 404 (580)
Q Consensus 331 ~~~~p~~p~~~--~~~~~~~~~~~l~~l~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~ 404 (580)
+.. |..+.-. .......+...+......+.+... ....++.+.+...... ..+.+.|++||
T Consensus 308 ~~~-p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~iNn 374 (552)
T PLN02354 308 PEL-PEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK------------VDGKLRYALNG 374 (552)
T ss_pred CCC-CCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc------------CCceEEEEECC
Confidence 112 2111100 000000111111111111111000 0112233333221110 11257899999
Q ss_pred eeeecCchhhhhhhhcCCccCccCCC-CCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCc
Q 047497 405 ISFVMPTTALLQAHFTGKSYGVYNPD-FPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPL 483 (580)
Q Consensus 405 ~~~~~p~~~~l~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~ 483 (580)
++|..|++|+|.+.+.++..|.++.+ ++..+|..++ ....++.++.++.|++|||+|+|.. ...|||
T Consensus 375 ~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~ 442 (552)
T PLN02354 375 VSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSW 442 (552)
T ss_pred ccCCCCCCChHHhhhhcccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCC
Confidence 99999999998877655444655433 3444443211 0233567889999999999999964 468999
Q ss_pred cccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecC
Q 047497 484 HLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDG 563 (580)
Q Consensus 484 HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 563 (580)
|||||+||||++|.|.|++.. ...+|+.||++|||+.||++||++|||++||||+|+|||||..|+..||.++|.|.++
T Consensus 443 HLHGh~F~Vlg~G~G~~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~ 521 (552)
T PLN02354 443 HLDGYSFFAVAVEPGTWTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSP 521 (552)
T ss_pred cCCCccEEEEeecCCCCCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCC
Confidence 999999999999999998753 5678999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCC
Q 047497 564 KHPNQKLPPPPADLPQC 580 (580)
Q Consensus 564 ~~~~~~~~~~p~~~~~c 580 (580)
.+..++++++|.+.+.|
T Consensus 522 ~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 522 ERSLRDEYNMPENALLC 538 (552)
T ss_pred ccccCcCCCCCcccccc
Confidence 88888888899999999
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=5.5e-104 Score=845.94 Aligned_cols=507 Identities=24% Similarity=0.414 Sum_probs=407.8
Q ss_pred cceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccc
Q 047497 29 LGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQ 108 (580)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 108 (580)
..++.+|+|+|++..+++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred cccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhh
Q 047497 109 CPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQ 187 (580)
Q Consensus 109 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~ 187 (580)
|||+||++|+|+|++++++||||||||...|+ +||+|+|||+++++.+.+++.+|.|++++++||++.+...+ .....
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTL-KKILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHH-HHHhh
Confidence 99999999999999877999999999999887 79999999998765556666778999999999999886553 33333
Q ss_pred cCCC-CCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEE
Q 047497 188 TGGG-PNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETL 266 (580)
Q Consensus 188 ~~~~-~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l 266 (580)
.+.. +..++.+||||+... ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|
T Consensus 171 ~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 3432 337899999999642 23689999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCCCCCcccc
Q 047497 267 LIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPALNDTSFA 346 (580)
Q Consensus 267 ~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~ 346 (580)
.|++||||||+|++++++ |+|+|++.+...+ .+....|+|+|+++.. . .+.. |..|.+.+....
T Consensus 244 ~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~--------~-~~~~-p~~p~~~~~~~~ 307 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKG--------H-KIIH-ARQPDPDDLEWS 307 (536)
T ss_pred EEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCC--------C-CCCC-CCCCCcCCcccc
Confidence 999999999999999876 9999999864322 2356789999988652 1 0111 223333333222
Q ss_pred cccccccccccCCCCCCCCCCCccceEEEEeccCcc-cCCCCCcccCCCCCeeeeeecceeeecCchhhhhhhhcCCccC
Q 047497 347 TSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTS-PCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQAHFTGKSYG 425 (580)
Q Consensus 347 ~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g 425 (580)
..+...++.+..++.+..+|+..++...+.+..... .+. . ...+.++.|++|+++|..|++|+|.+++.++. |
T Consensus 308 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~-g 381 (536)
T PLN02792 308 IKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESS-A----ALVKRKQRYAINGVSFVPSDTPLKLADHFKIK-G 381 (536)
T ss_pred ccchhhhhhccCCCCCCCCCCcccccceeccceeEEeccc-c----cccCceeEEEECCcccCCCCCchhhhhhhccC-C
Confidence 222222233323223444554433322222111110 000 0 00123578999999999999999988777665 6
Q ss_pred ccCC-CCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCC
Q 047497 426 VYNP-DFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNK 504 (580)
Q Consensus 426 ~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 504 (580)
.+.. +|+..+|..++ ...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.
T Consensus 382 ~~~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~- 447 (536)
T PLN02792 382 VFKVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA- 447 (536)
T ss_pred CcCcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-
Confidence 6654 37766663211 123577899999999999999954 36899999999999999999999874
Q ss_pred CCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 047497 505 DPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKHPNQKLPPPPADLPQC 580 (580)
Q Consensus 505 ~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 580 (580)
.+..+|+.||++||||.|+++||++|||++||||+|+||||+..|+..||.++|.|+++.+..+++++||.+++.|
T Consensus 448 ~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 448 SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 4567999999999999999999999999999999999999999999999999999999999889999999999999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.5e-103 Score=844.02 Aligned_cols=497 Identities=25% Similarity=0.439 Sum_probs=393.2
Q ss_pred cceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccc
Q 047497 29 LGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQ 108 (580)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 108 (580)
.+++++|+|+|++..+++||.++.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++++||||+++ ||
T Consensus 26 ~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-tQ 104 (539)
T PLN02835 26 EDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-TN 104 (539)
T ss_pred cCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-Cc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhh
Q 047497 109 CPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQ 187 (580)
Q Consensus 109 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~ 187 (580)
|||+||++|+|+|++++++||||||||...|+ +||+|+|||++++..++++..+|+|++|+++||++++...+... ..
T Consensus 105 ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~~ 183 (539)
T PLN02835 105 CPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-LD 183 (539)
T ss_pred CCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-hh
Confidence 99999999999999867899999999999888 79999999987655555666779999999999999987664333 33
Q ss_pred cCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEE
Q 047497 188 TGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLL 267 (580)
Q Consensus 188 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~ 267 (580)
.+.....++.+||||+.. +.++|++|++|||||||+|....+.|+|+||+|+||++||.+++|..++.|.
T Consensus 184 ~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~ 253 (539)
T PLN02835 184 SGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLD 253 (539)
T ss_pred cCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEE
Confidence 444455789999999964 5799999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCCC---CCcc
Q 047497 268 IAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPAL---NDTS 344 (580)
Q Consensus 268 l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~---~~~~ 344 (580)
|++||||||+|++++++ |+|||++.....+ ......|+|+|+++.. . . .+.+ |..+.. .+..
T Consensus 254 i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~------~-~-~~~~-p~~p~~~~~~~~~ 318 (539)
T PLN02835 254 VHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRT------P-A-SGPL-PALPSGELHWSMR 318 (539)
T ss_pred ECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCC------C-C-CCCC-CCCCccccccccc
Confidence 99999999999999876 9999998642222 2356789999987542 0 0 1111 221111 0000
Q ss_pred cccccccccccccCCCCCCC---C-CCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhhhhhc
Q 047497 345 FATSFTNKLRSLASTQFPAN---V-PQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQAHFT 420 (580)
Q Consensus 345 ~~~~~~~~l~~l~~~~~p~~---~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~ 420 (580)
........+......+.+.. . ....++++.+...... .+ +...|++|+++|..|..|+|.+++.
T Consensus 319 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-g~~~w~iN~~s~~~p~~P~L~~~~~ 386 (539)
T PLN02835 319 QARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL-----------IN-GKQRYAVNGVSYVNSDTPLKLADYF 386 (539)
T ss_pred hhhccccccCccccCCCCCccccccccCCCceEEEeccccc-----------cC-CeEEEEECCcccCCCCCChhhhhhh
Confidence 00000001111111111000 0 0112333333221110 12 2467999999999888898877665
Q ss_pred CCccCccCCCC-CCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCc
Q 047497 421 GKSYGVYNPDF-PTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGN 499 (580)
Q Consensus 421 ~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 499 (580)
+.+ |.|+.+. ...++ +.....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 387 ~~~-~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~ 451 (539)
T PLN02835 387 GIP-GVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQ 451 (539)
T ss_pred cCC-CccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCC
Confidence 443 4444321 11111 111234678899999999999999964 4689999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCC
Q 047497 500 FDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKHPNQKLPPPPADLPQ 579 (580)
Q Consensus 500 ~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 579 (580)
|++.. ...+|+.||++||||.|+++||++|||++||||.|+|||||++|+..||+++|.|+++.+..+++++||.++|.
T Consensus 452 ~~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~ 530 (539)
T PLN02835 452 WTPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALL 530 (539)
T ss_pred CCccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccc
Confidence 98653 45678999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred C
Q 047497 580 C 580 (580)
Q Consensus 580 c 580 (580)
|
T Consensus 531 C 531 (539)
T PLN02835 531 C 531 (539)
T ss_pred c
Confidence 9
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.5e-102 Score=835.16 Aligned_cols=501 Identities=27% Similarity=0.464 Sum_probs=391.2
Q ss_pred cceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccc
Q 047497 29 LGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQ 108 (580)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 108 (580)
.+++++|+|+|++..+++||+.+.+++|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++++|+||+++ ||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQ 101 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TN 101 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-Cc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhh
Q 047497 109 CPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQ 187 (580)
Q Consensus 109 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~ 187 (580)
|||+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++++.+.++..+++|++|+++||++.+...+. ....
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMR-ASLD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHH-hhhh
Confidence 99999999999999866899999999999988 899999999998766666667789999999999998755432 2223
Q ss_pred cCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEE
Q 047497 188 TGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLL 267 (580)
Q Consensus 188 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~ 267 (580)
.+.....++.+||||+.. ..+.+++++|++|||||||+|+...+.|+|+||+|+||++||.+++|..+++|.
T Consensus 181 ~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~ 252 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLD 252 (545)
T ss_pred cCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEE
Confidence 333344679999999963 236899999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEcCCCCCC--ceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCCCCCccc
Q 047497 268 IAPGQTTNVLLKTKPHYPS--ATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPALNDTSF 345 (580)
Q Consensus 268 l~pGeR~dv~v~~~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 345 (580)
|++||||||+|++++...| ++|||++.....+ ......|+|+|+++.. . ...+ . +..|...+...
T Consensus 253 i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~------~-~~~p-~-p~~p~~~~~~~ 319 (545)
T PLN02168 253 IHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPL------D-PVGP-L-PLAPALHDYFS 319 (545)
T ss_pred EcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCC------C-CCCC-C-CCCCccccccc
Confidence 9999999999999865433 4899999863322 2356789999987642 1 1111 2 22233333221
Q ss_pred ccccccccccccCCCCCCCCCCC--------ccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhhh
Q 047497 346 ATSFTNKLRSLASTQFPANVPQN--------VDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQA 417 (580)
Q Consensus 346 ~~~~~~~l~~l~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~ 417 (580)
.......++....+..+...|.. .++.+.+.... . .....+.|++||++|..|.+|+|.+
T Consensus 320 ~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~----------~~~g~~~~~iN~~s~~~p~~P~l~~ 387 (545)
T PLN02168 320 SVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M----------LSSGKLRYTINGVSFVYPGTPLKLV 387 (545)
T ss_pred ccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c----------ccCceEEEEECCCccCCCCCchhhh
Confidence 11111111111111111222221 11222111100 0 0112578999999999999998876
Q ss_pred hhcCCccCccCC-CCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEec
Q 047497 418 HFTGKSYGVYNP-DFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQG 496 (580)
Q Consensus 418 ~~~~~~~g~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g 496 (580)
++.+++ +.+.. +++..+|.. ....++.++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 388 ~~~~~~-~~~~~~~~~~~p~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g 452 (545)
T PLN02168 388 DHFQLN-DTIIPGMFPVYPSNK-----------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYG 452 (545)
T ss_pred hhcccc-cccccCCCccCCCcC-----------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECC
Confidence 655432 22222 244443310 0122467889999999999999964 4699999999999999999
Q ss_pred cCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCC------CCCCC
Q 047497 497 FGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKH------PNQKL 570 (580)
Q Consensus 497 ~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~------~~~~~ 570 (580)
.|.|++.. ...+|+.||++|||+.||++||++|||++||||.|+|||||++|+..||.+.+.|++++. ..+.+
T Consensus 453 ~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~ 531 (545)
T PLN02168 453 FGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDE 531 (545)
T ss_pred CCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccc
Confidence 99998653 457899999999999999999999999999999999999999999999999998865544 24678
Q ss_pred CCCCCCCCCC
Q 047497 571 PPPPADLPQC 580 (580)
Q Consensus 571 ~~~p~~~~~c 580 (580)
++||.++++|
T Consensus 532 ~~~P~~~~~c 541 (545)
T PLN02168 532 NPIPGNVIRC 541 (545)
T ss_pred cCCChhhccc
Confidence 8999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.9e-102 Score=823.76 Aligned_cols=528 Identities=48% Similarity=0.885 Sum_probs=466.2
Q ss_pred ccccceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCC
Q 047497 26 EPALGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAY 105 (580)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 105 (580)
..+.++++.|+|++++..+.++|.++.++++||++|||+|++++||+|.|+|.|+++++++|||||+++..++|+|| +.
T Consensus 22 ~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~ 100 (563)
T KOG1263|consen 22 SQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VY 100 (563)
T ss_pred hhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-Cc
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ccccccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccC-ChHHHHH
Q 047497 106 ITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKA-DPETIIS 183 (580)
Q Consensus 106 ~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~-~~~~~~~ 183 (580)
+|||||+||++|+|+|++++|.||||||+|.+.++ +|++|+|||.++...++|++.+|+|++|+++||+.+ +...+..
T Consensus 101 ~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~ 180 (563)
T KOG1263|consen 101 ITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKN 180 (563)
T ss_pred cccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHH
Confidence 99999999999999999988999999999999999 699999999999988889989999999999999996 6666655
Q ss_pred HhhhcCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEE
Q 047497 184 QALQTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFET 263 (580)
Q Consensus 184 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~ 263 (580)
.....+..+..+|..+|||+.+..++| .++++|++||+|||||+|+|....+.|+|++|+|+||++||.+++|..+
T Consensus 181 ~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~ 256 (563)
T KOG1263|consen 181 FLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTT 256 (563)
T ss_pred hhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeee
Confidence 555566656558999999999988998 6899999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCC-CCCCcceEEEEEEecCCCCcccCCCCC-CCCCcCCCCCCCC
Q 047497 264 ETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQG-TFDNSTVAGILEYEKPLNFHLSSNSIK-NLPLFKPVLPALN 341 (580)
Q Consensus 264 d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~-~~~~~~~~ail~y~~~~~~~~~~~~~~-~~~~~~p~~p~~~ 341 (580)
++|.|.||||+||+|++++.+ ++|+|++.++.++.. .+ +....++++|.+... ... ..+.. +.++...
T Consensus 257 ~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~------~~s~~~~~~-~~~~~~~ 326 (563)
T KOG1263|consen 257 DSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPF-NLTTTGILRYSGSTH------PASEKLPIY-PFLPPGN 326 (563)
T ss_pred ceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcc------cCcccCccc-ccCCccc
Confidence 999999999999999999998 799999998766542 23 678999999998432 101 11222 3455555
Q ss_pred CcccccccccccccccCCCCCCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchh-hhhhhhc
Q 047497 342 DTSFATSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTA-LLQAHFT 420 (580)
Q Consensus 342 ~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~-~l~~~~~ 420 (580)
+......+...++.+....++.++|+..++...++++.+...++... .++++..+++|+.+|..|+.| ++..++.
T Consensus 327 ~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l~~~~~ 402 (563)
T KOG1263|consen 327 DTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLLAAYFK 402 (563)
T ss_pred CchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhhhhhhc
Confidence 65556666677888877777888999999988888877776654211 346688899999999999875 5666666
Q ss_pred CCccCccCCCCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcC
Q 047497 421 GKSYGVYNPDFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNF 500 (580)
Q Consensus 421 ~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 500 (580)
.++ |.+..+|+..|+..+++++ .+.++.++.+++++.||++++|.+......||||||||.|||++.|.|.|
T Consensus 403 ~~~-~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~ 474 (563)
T KOG1263|consen 403 NIP-GYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNW 474 (563)
T ss_pred cCC-ccccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEeccccc
Confidence 665 7888899999988887765 45689999999999999999999877778899999999999999999999
Q ss_pred CCCCCC-CCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCCCCCCCCCCCCCCCC
Q 047497 501 DPNKDP-TKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKHPNQKLPPPPADLPQ 579 (580)
Q Consensus 501 ~~~~~~-~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 579 (580)
++..++ ..+|+.+|+.||||.|+||||++|||.|||||.|+|||||++|...||.++|+|.++.+..+++.+||.+.++
T Consensus 475 ~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~ 554 (563)
T KOG1263|consen 475 DPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPK 554 (563)
T ss_pred CcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCccc
Confidence 995445 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 047497 580 C 580 (580)
Q Consensus 580 c 580 (580)
|
T Consensus 555 c 555 (563)
T KOG1263|consen 555 C 555 (563)
T ss_pred c
Confidence 9
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.9e-97 Score=805.95 Aligned_cols=519 Identities=33% Similarity=0.579 Sum_probs=393.4
Q ss_pred ccccccceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecC-CCCceEEecCCccCCCCCCCC
Q 047497 24 LAEPALGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHV-QNNISIHWHGIRQLRSGWADG 102 (580)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DG 102 (580)
....+.+++++|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+++|+||
T Consensus 16 ~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG 95 (566)
T PLN02604 16 NFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG 95 (566)
T ss_pred HhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC
Confidence 3345558999999999999999999999999999999999999999999999999998 589999999999999999999
Q ss_pred CCCccccccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHH
Q 047497 103 PAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETI 181 (580)
Q Consensus 103 v~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~ 181 (580)
+++++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.+.+.++ .+|.|.+|+|+||++....+.
T Consensus 96 ~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~ 173 (566)
T PLN02604 96 TEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQ 173 (566)
T ss_pred CCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHH
Confidence 999999999999999999998 8999999999998887 7999999999886544444 358899999999999887654
Q ss_pred HHHhhhc-CCCCCCCCeEEEcCCCCCCCCCC----------------C-CceeEEEEeCCCEEEEEEEecCCCCeEEEEE
Q 047497 182 ISQALQT-GGGPNVSDAYTINGLPGPLYNCS----------------A-KDTFKLKVKPGKTYLLRLINAALNDELFFSI 243 (580)
Q Consensus 182 ~~~~~~~-~~~~~~~~~~liNG~~~~~~~~~----------------~-~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i 243 (580)
....... ......++..+|||+.. +.|+ + ...+.+++++|++|||||||+|+.+.+.|+|
T Consensus 174 ~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~si 251 (566)
T PLN02604 174 ALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQI 251 (566)
T ss_pred HHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEE
Confidence 4332211 11113568999999864 3443 1 1345899999999999999999999999999
Q ss_pred cCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCccc
Q 047497 244 ANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLS 323 (580)
Q Consensus 244 ~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~ 323 (580)
+||+|+|||+||.+++|++++.|.|++||||||+|++++.+ +++||||+.....+. +.....|||+|++...
T Consensus 252 dgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~---- 323 (566)
T PLN02604 252 EGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHP---- 323 (566)
T ss_pred CCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCCC---CCcceeEEEEECCCCC----
Confidence 99999999999999999999999999999999999998864 358999987543321 2356789999986431
Q ss_pred CCCCCCCCCcCCCCCCCCCcccccccccccccccCCCCCCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeec
Q 047497 324 SNSIKNLPLFKPVLPALNDTSFATSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVN 403 (580)
Q Consensus 324 ~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 403 (580)
. ..++...+..+.+.+..........+..+.. .+...+...++++.+...... .+..+.|++|
T Consensus 324 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~~~w~in 386 (566)
T PLN02604 324 --R-RSPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGYRRWSVN 386 (566)
T ss_pred --C-CCCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCeEEEEEC
Confidence 0 1111110111122211100000001111100 111223345665554322111 1124689999
Q ss_pred ceeeecCchhhhhhhhcCCccCccCCCCCCCCCeeccc---CCC-CCCCccccCCceEEEecCCCEEEEEEecCCCC---
Q 047497 404 NISFVMPTTALLQAHFTGKSYGVYNPDFPTSPLIAFNY---TGT-PPNNTMVSNGTKLVVLPFNSSVELIMQDTSIL--- 476 (580)
Q Consensus 404 ~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~---~~~-~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~--- 476 (580)
+++|..|..|+|.+.+.... |.++.+. ++..+++ +.. ...+...+.+..++.++.|++||++|+|....
T Consensus 387 ~~~~~~p~~p~L~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (566)
T PLN02604 387 NVSFNLPHTPYLIALKENLT-GAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNAN 462 (566)
T ss_pred cccCCCCCCchhHhhhhcCC-CcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCC
Confidence 99999888888877665432 4443221 1211111 000 00111123467789999999999999996421
Q ss_pred CCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceE
Q 047497 477 GAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKM 556 (580)
Q Consensus 477 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~ 556 (580)
....||||||||+||||++|.|.|++......+|+.||++|||+.|++++|++|||++||||.|+|||||+||+..||++
T Consensus 463 ~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~ 542 (566)
T PLN02604 463 NSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGV 542 (566)
T ss_pred CCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEE
Confidence 24689999999999999999999987765668899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCC
Q 047497 557 AWIVLDGKHPNQKLPPPPADLPQC 580 (580)
Q Consensus 557 ~~~V~~~~~~~~~~~~~p~~~~~c 580 (580)
+|.+. .+.++++|.++++|
T Consensus 543 v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 543 VFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred EEeeC-----hhhccCCCCCcCcc
Confidence 99754 35677889999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=5.4e-97 Score=801.66 Aligned_cols=514 Identities=31% Similarity=0.564 Sum_probs=381.2
Q ss_pred cceeEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCC-CCceEEecCCccCCCCCCCCCCCcc
Q 047497 29 LGVTRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ-NNISIHWHGIRQLRSGWADGPAYIT 107 (580)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~t 107 (580)
.+++++|+|++++..+++||..+.+++|||++|||+||+++||+|+|+|+|+|+ ++|+|||||+++.+++|+||+|+++
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 478999999999999999999999999999999999999999999999999997 7899999999999999999999999
Q ss_pred ccccCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhh
Q 047497 108 QCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQAL 186 (580)
Q Consensus 108 q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~ 186 (580)
||+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+++||++...........
T Consensus 100 q~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 100 QCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred cCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhc
Confidence 9999999999999998 7999999999999887 8999999999765433222 46899999999999986543222211
Q ss_pred hc-CCCCCCCCeEEEcCCCCCCCCCC-------------------CC-ceeEEEEeCCCEEEEEEEecCCCCeEEEEEcC
Q 047497 187 QT-GGGPNVSDAYTINGLPGPLYNCS-------------------AK-DTFKLKVKPGKTYLLRLINAALNDELFFSIAN 245 (580)
Q Consensus 187 ~~-~~~~~~~~~~liNG~~~~~~~~~-------------------~~-~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~g 245 (580)
.. ......++.+||||+.. +.|. +. ...+++|++|++|||||||+|+...+.|+|+|
T Consensus 178 ~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idg 255 (574)
T PLN02191 178 SKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQG 255 (574)
T ss_pred cCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECC
Confidence 11 11124568999999864 3342 11 22369999999999999999999999999999
Q ss_pred ceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCC
Q 047497 246 HTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSN 325 (580)
Q Consensus 246 h~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 325 (580)
|+|+|||+||.+++|+.+++|.|++||||||+|++++.+ +++||||+.....+. ......|+|+|++...
T Consensus 256 H~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~------ 325 (574)
T PLN02191 256 HKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NTTQALTILNYVTAPA------ 325 (574)
T ss_pred CeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CCCCceEEEEECCCCC------
Confidence 999999999999999999999999999999999999864 368999997533221 1223569999987652
Q ss_pred CCCCCCCcCCCCCCCCCcccccccccccccccCCCCCCCCCC-CccceEEEEeccCcccCCCCCcccCCCCCeeeeeecc
Q 047497 326 SIKNLPLFKPVLPALNDTSFATSFTNKLRSLASTQFPANVPQ-NVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNN 404 (580)
Q Consensus 326 ~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~ 404 (580)
+ ..+....+..+.+.+........ ...+.....+ ..|. ..+..+.+... .. ......|++|+
T Consensus 326 ~-~~p~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~-~~p~~~~~~~~~~~~~--~~-----------~~~~~~~~~n~ 388 (574)
T PLN02191 326 S-KLPSSPPPVTPRWDDFERSKNFS--KKIFSAMGSP-SPPKKYRKRLILLNTQ--NL-----------IDGYTKWAINN 388 (574)
T ss_pred C-CCCCCCCCCCCcccccchhhccc--ccccccccCC-CCCCcccceEEEeccc--ce-----------eCCeEEEEECc
Confidence 1 10110001122222221111111 1111110011 1222 23444433211 10 11235799999
Q ss_pred eeeecCchhhhhhhhcCCccCccCCCCCCCC-CeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCC---CCCC
Q 047497 405 ISFVMPTTALLQAHFTGKSYGVYNPDFPTSP-LIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSIL---GAES 480 (580)
Q Consensus 405 ~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~---~~~~ 480 (580)
++|..|..|+|.+.+.+.. +.+..+.+... +..|+..+.. .....+.++.++.++.|++|||+|+|.... ....
T Consensus 389 ~s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~ 466 (574)
T PLN02191 389 VSLVTPATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPP-PFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEI 466 (574)
T ss_pred ccCcCCCcchHHHHhhccC-cccccCCCcccccccccccCCC-ccccccccceeEEecCCCEEEEEEECCCcccCCCCCC
Confidence 9999898888777655432 33333322211 1112111110 000123456789999999999999996421 2578
Q ss_pred CCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEE
Q 047497 481 HPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIV 560 (580)
Q Consensus 481 HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V 560 (580)
||||||||+||||++|.|.|++......+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|..
T Consensus 467 HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e 546 (574)
T PLN02191 467 HPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAE 546 (574)
T ss_pred CCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEec
Confidence 99999999999999999999975444578999999999999999999999999999999999999999999999999953
Q ss_pred ecCCCCCCCCCCCCCCCCCC
Q 047497 561 LDGKHPNQKLPPPPADLPQC 580 (580)
Q Consensus 561 ~~~~~~~~~~~~~p~~~~~c 580 (580)
+. +.++.+|.++++|
T Consensus 547 --~~---~~~~~~p~~~~~C 561 (574)
T PLN02191 547 --GL---NRIGKIPDEALGC 561 (574)
T ss_pred --Ch---hhccCCCcchhhh
Confidence 22 3445578889999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.9e-96 Score=797.57 Aligned_cols=512 Identities=33% Similarity=0.588 Sum_probs=385.9
Q ss_pred eEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCC-CCceEEecCCccCCCCCCCCCCCccccc
Q 047497 32 TRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ-NNISIHWHGIRQLRSGWADGPAYITQCP 110 (580)
Q Consensus 32 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 110 (580)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|++. ++++|||||+++.+++||||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 488999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhhcC
Q 047497 111 IQTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQTG 189 (580)
Q Consensus 111 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~ 189 (580)
|+||++|+|+|++ +++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+|+||+++.............
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7999999999998887 7999999999886544444 36899999999999987655433222111
Q ss_pred -CCCCCCCeEEEcCCCCCCCCCCC------------------C-ceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceee
Q 047497 190 -GGPNVSDAYTINGLPGPLYNCSA------------------K-DTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLT 249 (580)
Q Consensus 190 -~~~~~~~~~liNG~~~~~~~~~~------------------~-~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 249 (580)
.....++.++|||+.. +.|.. . ....++|++|++|||||||+|+.+.+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568899999864 33321 1 224589999999999999999999999999999999
Q ss_pred EEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCC
Q 047497 250 VVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKN 329 (580)
Q Consensus 250 via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~ 329 (580)
|||+||.+++|+.++.|.|++||||||+|++++.+ +++||||+.....+ .......|+|+|++... + ..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~------~-~~ 305 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRK---PNTPPGLTVLNYYPNSP------S-RL 305 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCC---CCCccEEEEEEECCCCC------C-CC
Confidence 99999999999999999999999999999998754 36899998754321 12346789999987542 1 10
Q ss_pred CCCcCCCCCCCCCcccccccccccccccCCCCCCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeec
Q 047497 330 LPLFKPVLPALNDTSFATSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVM 409 (580)
Q Consensus 330 ~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~ 409 (580)
++...+..+.+.+....... .+..+.... ....|...++++++...... .+..+.|++|+.+|..
T Consensus 306 p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~ 370 (541)
T TIGR03388 306 PPTPPPVTPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTL 370 (541)
T ss_pred CCCCCCCCCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCC
Confidence 11100222322222111111 111111100 11233455666654322110 1124579999999998
Q ss_pred CchhhhhhhhcCCccCccCCCCC-CCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCC---CCCCCCccc
Q 047497 410 PTTALLQAHFTGKSYGVYNPDFP-TSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSIL---GAESHPLHL 485 (580)
Q Consensus 410 p~~~~l~~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~---~~~~HP~Hl 485 (580)
|..|+|.+.+.++. +.++.+.+ ...+..|+... ...+...+.++.++.++.|++||++|+|.... ....|||||
T Consensus 371 p~~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HL 448 (541)
T TIGR03388 371 PHTPYLGSLKYNLL-NAFDQKPPPENYPRDYDIFK-PPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHL 448 (541)
T ss_pred CCccHHHHHhhcCC-ccccCCCCcccccccccccC-CCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEe
Confidence 88888777655432 22221110 00111111111 00111234567889999999999999996421 246899999
Q ss_pred cCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecCCC
Q 047497 486 HGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKH 565 (580)
Q Consensus 486 HG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~ 565 (580)
|||+||||++|.|.|++..+...+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+.
T Consensus 449 HGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~---- 524 (541)
T TIGR03388 449 HGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG---- 524 (541)
T ss_pred cCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc----
Confidence 9999999999999998665556789999999999999999999999999999999999999999999999999654
Q ss_pred CCCCCCCCCCCCCCC
Q 047497 566 PNQKLPPPPADLPQC 580 (580)
Q Consensus 566 ~~~~~~~~p~~~~~c 580 (580)
.++++.+|.++++|
T Consensus 525 -~~~~~~~P~~~~~C 538 (541)
T TIGR03388 525 -VEKVGKLPKEALGC 538 (541)
T ss_pred -ccccCCCCccccCC
Confidence 25677789999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.6e-94 Score=775.20 Aligned_cols=492 Identities=27% Similarity=0.474 Sum_probs=372.7
Q ss_pred EEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCC-CCceEEecCCccCCCCCCCCCCCcccccc
Q 047497 33 RHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ-NNISIHWHGIRQLRSGWADGPAYITQCPI 111 (580)
Q Consensus 33 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~i 111 (580)
-.|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++|+|||||++++.++|+||+|++|||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEEC-CCccceeEeeCcccccccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhhcC-
Q 047497 112 QTGQSYVYNFTIV-GQRGTLWWHAHLSWLRSTLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQTG- 189 (580)
Q Consensus 112 ~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~- 189 (580)
+||++|+|+|+++ +++||||||||.+.|+.||+|+|||++++..++ .+|+|++|+|+||+++....+........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999974 589999999999999888999999998764333 35889999999999998776544333221
Q ss_pred CCCCCCCeEEEcCCCCCCCC---CC---CCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCce-eeEEecCCCcCCceE
Q 047497 190 GGPNVSDAYTINGLPGPLYN---CS---AKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHT-LTVVEADAIYVKPFE 262 (580)
Q Consensus 190 ~~~~~~~~~liNG~~~~~~~---~~---~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~P~~ 262 (580)
.....++.++|||+...... ++ ....+.++|++|++|||||||+|+.+.+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 11234689999999654320 01 113578999999999999999999999999999999 999999999999999
Q ss_pred EeEEEeCCCceEEEEEEcCCCCC-----CceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCC
Q 047497 263 TETLLIAPGQTTNVLLKTKPHYP-----SATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVL 337 (580)
Q Consensus 263 ~d~l~l~pGeR~dv~v~~~~~~~-----~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~ 337 (580)
++.|.|++||||||+|+++++.. .++||||+.....+ +.....|+|+|++... ...+.. |..
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~--------~~~~~~-p~~ 312 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKA--------SKLPSV-PET 312 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCC--------CCCCCC-CCC
Confidence 99999999999999999997521 28999999754322 2345789999987542 111111 111
Q ss_pred CCCCC-cccccccccccccccCCCCC-CCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeec--Cchh
Q 047497 338 PALND-TSFATSFTNKLRSLASTQFP-ANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVM--PTTA 413 (580)
Q Consensus 338 p~~~~-~~~~~~~~~~l~~l~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~~~ 413 (580)
+.... ..........|.++.....+ .+.+..+++++.+.+.+.... .+..+.|++|+++|.. |..|
T Consensus 313 ~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~~g~~~~~~N~~s~~~~~~~~P 382 (538)
T TIGR03390 313 PPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------LNGRVAWLQNGLSWTESVRQTP 382 (538)
T ss_pred CCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------cCCeEEEEECCcccCCCCCCCc
Confidence 11100 00000001123333221111 112345677776666543210 1235789999999985 6778
Q ss_pred hhhhhhcCCccCccCCCCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCC-----CCCCCCccccCC
Q 047497 414 LLQAHFTGKSYGVYNPDFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSIL-----GAESHPLHLHGF 488 (580)
Q Consensus 414 ~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~-----~~~~HP~HlHG~ 488 (580)
+|...+.+. . +..++ |+ .. .........+.++.++.|++|||+|+|.... ....||||||||
T Consensus 383 ~L~~~~~~~----~----~~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh 449 (538)
T TIGR03390 383 YLVDIYENG----L----PATPN--YT--AA-LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGR 449 (538)
T ss_pred hHHHHhcCC----C----CcCCC--cc--cc-cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCC
Confidence 777655321 0 00000 11 00 0000122346678899999999999996411 247999999999
Q ss_pred cEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeC----------CCcEEEEEEEecCceeEEEEeechhhhhccceEEE
Q 047497 489 NFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVP----------SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAW 558 (580)
Q Consensus 489 ~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp----------~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~ 558 (580)
+||||++|.|.|++......+++.||++|||+.|| +++|++|||++||||.|+|||||+||+.+||+++|
T Consensus 450 ~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~ 529 (538)
T TIGR03390 450 HFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVW 529 (538)
T ss_pred cEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEE
Confidence 99999999999987654456788999999999996 78999999999999999999999999999999999
Q ss_pred EEecC
Q 047497 559 IVLDG 563 (580)
Q Consensus 559 ~V~~~ 563 (580)
.|.+.
T Consensus 530 ~~~~~ 534 (538)
T TIGR03390 530 VFGDA 534 (538)
T ss_pred EeCCh
Confidence 98654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=6.2e-79 Score=657.09 Aligned_cols=420 Identities=27% Similarity=0.459 Sum_probs=315.3
Q ss_pred eEEEEEEEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCcccccc
Q 047497 32 TRHYKFDIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPI 111 (580)
Q Consensus 32 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i 111 (580)
.++|+|++++..++++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++. +||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCccccccc
Confidence 379999999999999999999999999999999999999999999999999999999999999865 999999999999
Q ss_pred CCCCeEEEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhh---
Q 047497 112 QTGQSYVYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQ--- 187 (580)
Q Consensus 112 ~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~--- 187 (580)
+||++|+|+|++ .++||||||||...|. .||+|+|||++++..++ .+|+|++|+|+||++.+...++..+..
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 7899999999998877 79999999998754443 358999999999998776655433210
Q ss_pred ------------------cCCC---------------C-------CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEE
Q 047497 188 ------------------TGGG---------------P-------NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYL 227 (580)
Q Consensus 188 ------------------~~~~---------------~-------~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~r 227 (580)
.|.. + .....+||||+... ..+++.+++|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~-------~~~~~~v~~G~rvR 271 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA-------GNWTGLFRPGEKVR 271 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC-------CCceEEECCCCEEE
Confidence 0100 0 00123778887531 34678999999999
Q ss_pred EEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcc
Q 047497 228 LRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNST 307 (580)
Q Consensus 228 lRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~ 307 (580)
|||||+|+.+.+.|+|+||+|+||++||.+++|+.++.+.|++||||||+|+.++. |.|+|.+..... ...
T Consensus 272 LR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~---g~~~i~a~~~~~------~~~ 342 (587)
T TIGR01480 272 LRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD---DAFTIFAQDSDR------TGY 342 (587)
T ss_pred EEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC---ceEEEEEEecCC------Cce
Confidence 99999999999999999999999999999999999999999999999999998754 899999875322 235
Q ss_pred eEEEEEEecCCCCcccCCCCCCCCCcCCC-CCCCCCccc------------c----------------------------
Q 047497 308 VAGILEYEKPLNFHLSSNSIKNLPLFKPV-LPALNDTSF------------A---------------------------- 346 (580)
Q Consensus 308 ~~ail~y~~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~------------~---------------------------- 346 (580)
..++|++.+... ...+.+++. .....+... .
T Consensus 343 ~~~~l~~~~~~~--------~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (587)
T TIGR01480 343 ARGTLAVRLGLT--------APVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDA 414 (587)
T ss_pred EEEEEecCCCCC--------CCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccc
Confidence 667777764321 001111010 000000000 0
Q ss_pred --------------------------------------cccccccccccCCCCCCCCCCCccceEEEEeccCcccCCCCC
Q 047497 347 --------------------------------------TSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQ 388 (580)
Q Consensus 347 --------------------------------------~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~ 388 (580)
......|+.+. +...+...++++.+.+.-
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~----~~~~~~~p~r~~~~~L~g--------- 481 (587)
T TIGR01480 415 SPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLF----PPPDGRAPGREIELHLTG--------- 481 (587)
T ss_pred cccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccc----cccCcCCCCceEEEEEcC---------
Confidence 00000000000 000011223333332211
Q ss_pred cccCCCCCeeeeeecceeeecCchhhhhhhhcCCccCccCCCCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEE
Q 047497 389 TCQGPNGTMFQASVNNISFVMPTTALLQAHFTGKSYGVYNPDFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVEL 468 (580)
Q Consensus 389 ~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~ 468 (580)
+..++.|++||..|. ....+.++.|++|+|
T Consensus 482 -----~m~~~~wtiNG~~~~---------------------------------------------~~~pl~v~~Gervri 511 (587)
T TIGR01480 482 -----NMERFAWSFDGEAFG---------------------------------------------LKTPLRFNYGERLRV 511 (587)
T ss_pred -----CCceeEEEECCccCC---------------------------------------------CCCceEecCCCEEEE
Confidence 112456777765431 011356889999999
Q ss_pred EEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCceeEEEEeechh
Q 047497 469 IMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEV 548 (580)
Q Consensus 469 vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~ 548 (580)
.+.|.+ .+.|||||||+.|+++..+ |. .+.+|||+.|+||+++.++|++||||.|+||||++.
T Consensus 512 ~l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~ 574 (587)
T TIGR01480 512 VLVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLL 574 (587)
T ss_pred EEECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHH
Confidence 999975 4899999999999998643 21 135789999999999999999999999999999999
Q ss_pred hhhccceEEEEEe
Q 047497 549 HTSWGLKMAWIVL 561 (580)
Q Consensus 549 H~d~GM~~~~~V~ 561 (580)
|++.|||..|+|.
T Consensus 575 H~~~GM~~~~~v~ 587 (587)
T TIGR01480 575 HMEAGMFREVTVR 587 (587)
T ss_pred HHhCcCcEEEEeC
Confidence 9999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.4e-75 Score=625.26 Aligned_cols=428 Identities=20% Similarity=0.258 Sum_probs=297.6
Q ss_pred eEEEEEEEEEEeeecCCce-eEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccc
Q 047497 32 TRHYKFDIKLQNVTRLCNT-KSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCP 110 (580)
Q Consensus 32 ~~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 110 (580)
...|+|++++...++++.. ..+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 4579999999999997654 46999999999999999999999999999999999999999999987 99987 899
Q ss_pred cCCCCeEEEEEEECCCccceeEeeCccc----cc-ccceeeEEEeCCCCCCCCCCC--CCCceeeeeeccccCChHHHHH
Q 047497 111 IQTGQSYVYNFTIVGQRGTLWWHAHLSW----LR-STLYGPIIILPKRGIPYPFTK--PYKEVPIIFGEWFKADPETIIS 183 (580)
Q Consensus 111 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~d~e~~l~~~d~~~~~~~~~~~ 183 (580)
|+||++|+|+|++++++||||||+|.++ |. +||+|+|||+++.+...+++. ...|++|+++||+.+....+..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 9999999999998556899999999864 33 799999999998765444433 3468999999998865543211
Q ss_pred Hhh-hcCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEE-cCceeeEEecCCCcC-Cc
Q 047497 184 QAL-QTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHTLTVVEADAIYV-KP 260 (580)
Q Consensus 184 ~~~-~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P 260 (580)
... ........++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 110 0111234568999999975 456665 579999999999999999998 799999999999987 89
Q ss_pred eEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCC-CCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCC
Q 047497 261 FETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQ-GTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPA 339 (580)
Q Consensus 261 ~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~ 339 (580)
+.++.|.|+|||||||+|++++. ++|.+.+.+..... ..........++++..... .....+ |.
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~----P~ 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSDG---KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLI--------SASGTL----PD 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcCCC---ceEEEEEecccCcccccccCCCceeEEEEeccCc--------CCCCcC----Ch
Confidence 99999999999999999999874 88999876432211 0000111345555553221 000011 11
Q ss_pred CCCcccccccccccccccCCCCCCCCCCCccceEEEEeccCcc----c---CCCC-CcccC---------C-CC------
Q 047497 340 LNDTSFATSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTS----P---CQSN-QTCQG---------P-NG------ 395 (580)
Q Consensus 340 ~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~----~---~~~~-~~~~~---------~-~~------ 395 (580)
.++.+... +... ....+++.+.+..... . .... ..+.+ . .|
T Consensus 334 ------------~l~~~~~~--~~~~-~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (523)
T PRK10965 334 ------------SLASLPAL--PSLE-GLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMN 398 (523)
T ss_pred ------------hhccCCCC--Cccc-ccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccc
Confidence 01111000 0000 0112333332210000 0 0000 00000 0 00
Q ss_pred ------Ce-e----eeeecceeeecCchhhhhhhhcCCccCccCCCCCCCCCeecccCCCCCCCccccCCceEEEecCCC
Q 047497 396 ------TM-F----QASVNNISFVMPTTALLQAHFTGKSYGVYNPDFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNS 464 (580)
Q Consensus 396 ------~~-~----~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~ 464 (580)
.+ + .|+|||++|.+ ....+.++.|+
T Consensus 399 ~~~~~~~~~~~~~~~~~ING~~~~~--------------------------------------------~~~~~~~~~G~ 434 (523)
T PRK10965 399 HGAADAGPAFDFHHANKINGKAFDM--------------------------------------------NKPMFAAKKGQ 434 (523)
T ss_pred cccccccccccccccccCCCeECCC--------------------------------------------CCcceecCCCC
Confidence 00 0 12344433311 12235688999
Q ss_pred EEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe----cCceeE
Q 047497 465 SVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA----DNPGVW 540 (580)
Q Consensus 465 ~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a----dnpG~w 540 (580)
+++|.|.|.+. .+.|||||||++||||+++.. .....++.|||||.|++ +.+.|++++ +++|.|
T Consensus 435 ~e~w~i~N~~~--~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~ 502 (523)
T PRK10965 435 YERWVISGVGD--MMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAY 502 (523)
T ss_pred EEEEEEEeCCC--CCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCE
Confidence 99999999752 368999999999999999621 11223468999999988 666666555 467899
Q ss_pred EEEeechhhhhccceEEEEEe
Q 047497 541 FMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 541 l~HCHil~H~d~GM~~~~~V~ 561 (580)
|||||||+|||.|||+.|+|.
T Consensus 503 ~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 503 MAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEeCchhhhccCccceeEeC
Confidence 999999999999999999883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=4.7e-74 Score=610.32 Aligned_cols=402 Identities=17% Similarity=0.197 Sum_probs=291.7
Q ss_pred EEEEEEEEEeeecCC-ceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccC
Q 047497 34 HYKFDIKLQNVTRLC-NTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQ 112 (580)
Q Consensus 34 ~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 112 (580)
.|+|+++....++++ ..+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++. .+||++ ++|+
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 489999999999985 6789999999999999999999999999999999999999999999986 477765 7899
Q ss_pred CCCeEEEEEEECCCccceeEeeCccccc-----ccceeeEEEeCCCCCCCCCCC--CCCceeeeeeccccCChHHHHHHh
Q 047497 113 TGQSYVYNFTIVGQRGTLWWHAHLSWLR-----STLYGPIIILPKRGIPYPFTK--PYKEVPIIFGEWFKADPETIISQA 185 (580)
Q Consensus 113 PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~d~e~~l~~~d~~~~~~~~~~~~~ 185 (580)
||++|+|+|++.+++||||||+|.++.+ +||+|+|||+++.+...+++. ...|++|+++||+.+.......
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-- 199 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-- 199 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc--
Confidence 9999999999866799999999987733 799999999998765444432 2349999999998765433211
Q ss_pred hhcCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEE-cCceeeEEecCCCcC-CceEE
Q 047497 186 LQTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSI-ANHTLTVVEADAIYV-KPFET 263 (580)
Q Consensus 186 ~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~ 263 (580)
.........++.++|||+.+ |.++|++ ++|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|+.+
T Consensus 200 ~~~~~~g~~gd~~lvNG~~~----------p~~~v~~-~~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 200 NEPGSGGFVGDTLLVNGVQS----------PYVEVSR-GWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred cccccCCccCCeeEECCccC----------CeEEecC-CEEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 01111234568999999975 5689987 48999999999999999999 899999999997776 89999
Q ss_pred eEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCC----CCCCc---ceEEEEEEecCCCCcccCCCCCCCCCcCCC
Q 047497 264 ETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQG----TFDNS---TVAGILEYEKPLNFHLSSNSIKNLPLFKPV 336 (580)
Q Consensus 264 d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~~~~~~~~~~p~ 336 (580)
+.|.|+|||||||+|++++. +.+.+++........ .+... ....+++.+.... . .... ..
T Consensus 269 ~~l~l~pGeR~dvlVd~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~-~~ 335 (471)
T PRK10883 269 KQLSLAPGERREILVDMSNG---DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL--------L-PLVT-DN 335 (471)
T ss_pred CeEEECCCCeEEEEEECCCC---ceEEEECCCccccccccccccCCccccccceeEEEEcccc--------c-cCCC-Cc
Confidence 99999999999999999763 677777632111000 00000 0112222221100 0 0000 00
Q ss_pred CCCCCCcccccccccccccccCCCCCCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhh
Q 047497 337 LPALNDTSFATSFTNKLRSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQ 416 (580)
Q Consensus 337 ~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~ 416 (580)
+| ..+.. .. ..+....+++.+.+.. . .|.|||..|.+.
T Consensus 336 ~p------------~~l~~---~~---~~~~~~~~~~~~~l~~----------------~--~~~INg~~~~~~------ 373 (471)
T PRK10883 336 LP------------MRLLP---DE---IMEGSPIRSREISLGD----------------D--LPGINGALWDMN------ 373 (471)
T ss_pred CC------------hhhcC---CC---CCCCCCcceEEEEecC----------------C--cCccCCcccCCC------
Confidence 00 01111 00 0111223333333211 0 246787766321
Q ss_pred hhhcCCccCccCCCCCCCCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEec
Q 047497 417 AHFTGKSYGVYNPDFPTSPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQG 496 (580)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g 496 (580)
...+.++.|++++|.+.|. +.|||||||+.|||++++
T Consensus 374 --------------------------------------~~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~ 410 (471)
T PRK10883 374 --------------------------------------RIDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVN 410 (471)
T ss_pred --------------------------------------cceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEec
Confidence 0114567899999999873 689999999999999996
Q ss_pred cCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCce----eEEEEeechhhhhccceEEEEEec
Q 047497 497 FGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNPG----VWFMHCHLEVHTSWGLKMAWIVLD 562 (580)
Q Consensus 497 ~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnpG----~wl~HCHil~H~d~GM~~~~~V~~ 562 (580)
... ....+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||+.|+|.+
T Consensus 411 G~~---------~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 411 GAM---------PFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CCC---------CCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 321 111234799999996 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-59 Score=501.86 Aligned_cols=403 Identities=25% Similarity=0.385 Sum_probs=286.7
Q ss_pred eecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEE
Q 047497 44 VTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTI 123 (580)
Q Consensus 44 ~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~ 123 (580)
....+.....|.|||++|||+||+++||+|+|+++|.+.+.|++||||+.+++. +||++..+|+++.||++++|.|+.
T Consensus 45 ~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~ 122 (451)
T COG2132 45 AFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ 122 (451)
T ss_pred eeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC
Confidence 334577889999999999999999999999999999998889999999999855 999999999999999999999997
Q ss_pred CCCccceeEeeCccccc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhhcCCCCCCCCeEEEcC
Q 047497 124 VGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQTGGGPNVSDAYTING 202 (580)
Q Consensus 124 ~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG 202 (580)
+++||||||+|.++|. +||+|++||++.++.+. ..|.+..+++.+|+.......... ........++..+|||
T Consensus 123 -~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG 196 (451)
T COG2132 123 -DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNG 196 (451)
T ss_pred -CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECC
Confidence 6677999999999987 89999999999976554 447777888888876655433222 1222334568999999
Q ss_pred CCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCC
Q 047497 203 LPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKP 282 (580)
Q Consensus 203 ~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~ 282 (580)
+.. + +...++++||||++|+++.+.+.+++.+++|+||++||.+++|..++.+.|+|||||||++++.+
T Consensus 197 ~~~----------p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~ 265 (451)
T COG2132 197 AIL----------P-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND 265 (451)
T ss_pred Ccc----------c-eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC
Confidence 764 3 34445567999999999888888999999999999999999889999999999999999999998
Q ss_pred CCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCC-CCCCcccccccccccccccCCCC
Q 047497 283 HYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLP-ALNDTSFATSFTNKLRSLASTQF 361 (580)
Q Consensus 283 ~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~l~~l~~~~~ 361 (580)
. +.+.+.+... ... ....+......... ......++... ...+. ........+... .
T Consensus 266 ~---~~~~l~~~~~-~~~-----~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~----~ 323 (451)
T COG2132 266 G---GAVTLTALGE-DMP-----DTLKGFRAPNPILT--------PSYPVLNGRVGAPTGDM-ADHAPVGLLVTI----L 323 (451)
T ss_pred C---CeEEEEeccc-cCC-----ceeeeeeccccccc--------cccccccccccCCCcch-hhccccccchhh----c
Confidence 4 8999998751 111 11111111111000 00000000000 00000 000000000000 0
Q ss_pred CCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhhhhhcCCccCccCCCCCCCCCeeccc
Q 047497 362 PANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQAHFTGKSYGVYNPDFPTSPLIAFNY 441 (580)
Q Consensus 362 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~ 441 (580)
..+-+ ..+..+.+.. .-..+.|.+|+..|.+
T Consensus 324 ~~~~~-~~~~~~~l~~----------------~~~~~~~~~n~~~~~~-------------------------------- 354 (451)
T COG2132 324 VEPGP-NRDTDFHLIG----------------GIGGYVWAINGKAFDD-------------------------------- 354 (451)
T ss_pred CCCcc-cccccchhhc----------------ccccccccccCccCCC--------------------------------
Confidence 00000 0000000000 0011234444433210
Q ss_pred CCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEe
Q 047497 442 TGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVG 521 (580)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~ 521 (580)
....+.++.|++++|+|.|.+ .+.|||||||+.|+|++.+ .......+.||||+.
T Consensus 355 ------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~ 409 (451)
T COG2132 355 ------------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVL 409 (451)
T ss_pred ------------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEE
Confidence 123467789999999999975 3899999999999999986 112234578999999
Q ss_pred eCCCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEe
Q 047497 522 VPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 522 vp~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
+.+++.++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 410 v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 410 VAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred eCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 9999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=9.4e-48 Score=388.12 Aligned_cols=263 Identities=18% Similarity=0.205 Sum_probs=216.7
Q ss_pred ceeEEEEEEEEEEeeec-CCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCC--CCceEEecCCccCCCCCCCCCCCc
Q 047497 30 GVTRHYKFDIKLQNVTR-LCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ--NNISIHWHGIRQLRSGWADGPAYI 106 (580)
Q Consensus 30 ~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~~iH~HG~~~~~~~~~DGv~~~ 106 (580)
..+++|+|++++..+++ +|..+.+|+|||++|||+|++++||+|+|+|+|++. .++++||||.. ++||++++
T Consensus 25 ~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~ 99 (311)
T TIGR02376 25 PKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAAL 99 (311)
T ss_pred CcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCcc
Confidence 57889999999999885 699999999999999999999999999999999985 58899999963 38998888
Q ss_pred cccccCCCCeEEEEEEECCCccceeEeeCccc----cc-ccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHH
Q 047497 107 TQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSW----LR-STLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETI 181 (580)
Q Consensus 107 tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~ 181 (580)
+| |+||++++|+|++ +++||||||||.++ +. .||+|+|||++++.. +..|+|++|+++||+.+.....
T Consensus 100 ~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~~~ 172 (311)
T TIGR02376 100 TQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDEGE 172 (311)
T ss_pred ee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccccc
Confidence 87 9999999999997 78999999999754 43 799999999987542 2458999999999998654321
Q ss_pred HHHhh--hcCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCC
Q 047497 182 ISQAL--QTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVK 259 (580)
Q Consensus 182 ~~~~~--~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~ 259 (580)
..... ........++.++|||+.+++ .+.+++++|+++||||+|++..+.+.||++|+.+++|+.||.++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~ 245 (311)
T TIGR02376 173 GGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFAN 245 (311)
T ss_pred cccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccC
Confidence 00000 000012345899999997542 145789999999999999999899999999999999999999997
Q ss_pred ce--EEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCC
Q 047497 260 PF--ETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPL 318 (580)
Q Consensus 260 P~--~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 318 (580)
|. .++++.|+||||+||+|+++++ |.|+++++.+.... +....++++|++..
T Consensus 246 ~~~~~~~~~~i~PG~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 246 PPNRDVETWFIPGGSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCCCCcceEEECCCceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 64 4899999999999999999986 99999998754321 23578999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.6e-36 Score=261.57 Aligned_cols=116 Identities=42% Similarity=0.802 Sum_probs=108.9
Q ss_pred EEEEEeeecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeE
Q 047497 38 DIKLQNVTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSY 117 (580)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~ 117 (580)
+|+++.+.++|..+.+|+|||++|||+||+++||+|+|+|+|+++++++|||||+++++.+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCccceeEeeCccccc-ccceeeEEEeCCC
Q 047497 118 VYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKR 153 (580)
Q Consensus 118 ~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 153 (580)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999966699999999999875 8999999999874
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.3e-29 Score=226.17 Aligned_cols=107 Identities=40% Similarity=0.795 Sum_probs=95.0
Q ss_pred cCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEE
Q 047497 452 SNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIR 531 (580)
Q Consensus 452 ~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~ir 531 (580)
..+..++.++.|++|+|+|+|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45678899999999999999965 47999999999999999987765443 345678889999999999999999999
Q ss_pred EEecCceeEEEEeechhhhhccceEEEEEec
Q 047497 532 FLADNPGVWFMHCHLEVHTSWGLKMAWIVLD 562 (580)
Q Consensus 532 f~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 562 (580)
|++||||.|+|||||++|+|.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=7.8e-27 Score=214.22 Aligned_cols=149 Identities=33% Similarity=0.628 Sum_probs=120.1
Q ss_pred CceeeeeeccccCChHHHHHHhhhcC----CCCCCCCeEEEcCCCCCCCCCC-----CCceeEEEEeCCCEEEEEEEecC
Q 047497 164 KEVPIIFGEWFKADPETIISQALQTG----GGPNVSDAYTINGLPGPLYNCS-----AKDTFKLKVKPGKTYLLRLINAA 234 (580)
Q Consensus 164 ~e~~l~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~liNG~~~~~~~~~-----~~~~~~l~v~~G~~~rlRliN~~ 234 (580)
+|++|+++|||+++...++.+....+ ..+..+++++|||+.. +.|+ +...+.+++++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 47899999999988877765444332 1356789999999976 4444 34679999999999999999999
Q ss_pred CCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEE
Q 047497 235 LNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEY 314 (580)
Q Consensus 235 ~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y 314 (580)
+.+.+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++++ |+|+|++................|+|+|
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999854 9999999621111112244678999999
Q ss_pred ec
Q 047497 315 EK 316 (580)
Q Consensus 315 ~~ 316 (580)
++
T Consensus 157 ~~ 158 (159)
T PF00394_consen 157 DG 158 (159)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.76 E-value=4.8e-18 Score=152.10 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=81.8
Q ss_pred CCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCC---CCceEEecCCccCCCCCCCCCCCccccccCCC---C-e--E
Q 047497 47 LCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ---NNISIHWHGIRQLRSGWADGPAYITQCPIQTG---Q-S--Y 117 (580)
Q Consensus 47 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG---~-~--~ 117 (580)
.+.....+.++| .++|+|++++||+|+|+|+|.++ ....||+||...+..+-+||++.++||+|.|+ + . .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 456677788889 56999999999999999999964 44667777776655455999999999999884 2 1 3
Q ss_pred EEEEEECCCccceeEeeCccccc-ccceeeEEEe
Q 047497 118 VYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIIL 150 (580)
Q Consensus 118 ~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 150 (580)
++.|+. .++||||||||..+++ +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 445554 4899999999998888 6999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.60 E-value=2.5e-13 Score=137.76 Aligned_cols=247 Identities=17% Similarity=0.085 Sum_probs=150.4
Q ss_pred CCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCC-CeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCce
Q 047497 195 SDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALN-DELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQT 273 (580)
Q Consensus 195 ~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR 273 (580)
.+.+++||+. ..|.|++++|+++++++.|.... ..+.+++|++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 3678999985 34899999999999999998632 46788998864 4576421 223899999
Q ss_pred EEEEEEcCCCCCCceEEEEeccccCCCCCCCCcceEEEEEEecCCCCcccCCCCCCCCCcCCCCCCCCCccccccccccc
Q 047497 274 TNVLLKTKPHYPSATFFMKARPYVTGQGTFDNSTVAGILEYEKPLNFHLSSNSIKNLPLFKPVLPALNDTSFATSFTNKL 353 (580)
Q Consensus 274 ~dv~v~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l 353 (580)
+.+.++++++ |.||++|+........ ...+..+.|.++.... . + .. |. ++.-.+
T Consensus 108 ~ty~F~~~~~---Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~-------------~-~---~~-d~----e~~l~l 161 (311)
T TIGR02376 108 ATLRFKATRP---GAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG-------------L-P---EY-DK----EYYIGE 161 (311)
T ss_pred EEEEEEcCCC---EEEEEEcCCCCchhHH-hhcCcceEEEeeccCC-------------C-c---Cc-ce----eEEEee
Confidence 9999999876 9999999953210000 1123344444443210 0 0 00 00 000000
Q ss_pred ccccCCCCCCCCCCCccceEEEEeccCcccCCCCCcccCCCCCeeeeeecceeeecCchhhhhhhhcCCccCccCCCCCC
Q 047497 354 RSLASTQFPANVPQNVDRRFFFTVGLGTSPCQSNQTCQGPNGTMFQASVNNISFVMPTTALLQAHFTGKSYGVYNPDFPT 433 (580)
Q Consensus 354 ~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~ 433 (580)
+...... ........ . ..... +..... -...+||+...
T Consensus 162 ~d~~~~~-----~~~~~~~~-~-~~~~~--------~~~~~~--~~~~iNG~~~~------------------------- 199 (311)
T TIGR02376 162 SDLYTPK-----DEGEGGAY-E-DDVAA--------MRTLTP--THVVFNGAVGA------------------------- 199 (311)
T ss_pred eeEeccc-----cccccccc-c-chHHH--------HhcCCC--CEEEECCccCC-------------------------
Confidence 0000000 00000000 0 00000 000000 01234443210
Q ss_pred CCCeecccCCCCCCCccccCCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCC
Q 047497 434 SPLIAFNYTGTPPNNTMVSNGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVD 513 (580)
Q Consensus 434 ~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~ 513 (580)
....+.++.|++++|.|.|.+ ....+.||++|++|+++..+.+. ..
T Consensus 200 --------------------~~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~------------~~ 245 (311)
T TIGR02376 200 --------------------LTGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKF------------AN 245 (311)
T ss_pred --------------------CCCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcc------------cC
Confidence 001135678999999999975 24678999999999999985221 12
Q ss_pred CC--ccceEeeCCCcEEEEEEEecCceeEEEEeechhhh-hccceEEEEEec
Q 047497 514 PV--ERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHT-SWGLKMAWIVLD 562 (580)
Q Consensus 514 p~--~rDTv~vp~g~~v~irf~adnpG~wl~HCHil~H~-d~GM~~~~~V~~ 562 (580)
+. ..||+.|.||+...|.++++.||.|++|||...|. ..||+++++|..
T Consensus 246 ~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 246 PPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred CCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 22 26899999999999999999999999999999998 779999998853
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.57 E-value=1.2e-13 Score=150.28 Aligned_cols=227 Identities=12% Similarity=0.150 Sum_probs=144.8
Q ss_pred EEECCCCCC--cEEEEecCCEEEEEEEecCCC-CceEEecCCccCCCCCCCCCCC----ccccccCCCCeEEEEEEECCC
Q 047497 54 ISVNGKFPG--PRIVAREGDQLLIKVMNHVQN-NISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYVYNFTIVGQ 126 (580)
Q Consensus 54 ~~~Ng~~pg--P~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~f~~~~~ 126 (580)
+++||+.+. +++.+++|+++++||.|.... ...+++.|....... .||.+- +....|.|||+++..++. ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 779999863 689999999999999998854 456888887765432 788652 445678999999999996 56
Q ss_pred ccceeEeeCcccccccceeeEEEeCCC-CCCCC-CCCC----CCceee------------eee-----cc----------
Q 047497 127 RGTLWWHAHLSWLRSTLYGPIIILPKR-GIPYP-FTKP----YKEVPI------------IFG-----EW---------- 173 (580)
Q Consensus 127 ~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----d~e~~l------------~~~-----d~---------- 173 (580)
.|.|+..+...+. .|...+.+..... ..+.| .... -.+.-+ .+. +-
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899998865332 2333333322111 11111 0000 000000 000 00
Q ss_pred ccC----------------------------------------ChHHHH--HHhhhcC-----CCC----------C-CC
Q 047497 174 FKA----------------------------------------DPETII--SQALQTG-----GGP----------N-VS 195 (580)
Q Consensus 174 ~~~----------------------------------------~~~~~~--~~~~~~~-----~~~----------~-~~ 195 (580)
.+. ....++ ..+.... ..+ . ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 000000 0000000 000 0 11
Q ss_pred CeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEE
Q 047497 196 DAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTN 275 (580)
Q Consensus 196 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~d 275 (580)
..++|||+.++ ..+.|.++.|+++||||+|.+. ..+.+|+|||.|.++..||.+ +...+++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 24899999763 2346899999999999999874 567799999999999888863 2234889999999999
Q ss_pred EEEEcCCCCCCceEEEEeccc
Q 047497 276 VLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 276 v~v~~~~~~~~g~y~i~~~~~ 296 (580)
+.++++++ |.|+++||..
T Consensus 556 ~~f~ad~p---G~w~~HCH~l 573 (587)
T TIGR01480 556 FRVTADAL---GRWAYHCHML 573 (587)
T ss_pred EEEECCCC---eEEEEcCCCH
Confidence 99999998 9999999953
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.48 E-value=4.2e-13 Score=115.89 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=86.7
Q ss_pred HHHHHHhhccccccceeEEEEEEEE--EEee---ecCCceeEEE-EECCCCCCcEEEEecCCEEEEEEEecCCCCc--eE
Q 047497 16 CSFVTLCLLAEPALGVTRHYKFDIK--LQNV---TRLCNTKSII-SVNGKFPGPRIVAREGDQLLIKVMNHVQNNI--SI 87 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~--~i 87 (580)
++|+..+.+...+.++.++|+++|. .+.+ +..|+....+ ++|+++..+.|+|++||+|+++++|..+.++ .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i 87 (135)
T TIGR03096 8 AGFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI 87 (135)
T ss_pred HHHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE
Confidence 3444445556677899999999999 6655 3467777776 9999999999999999999999999987654 34
Q ss_pred EecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccccc
Q 047497 88 HWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR 140 (580)
Q Consensus 88 H~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~ 140 (580)
++||+ +..|+||++.+|+|++ +++|+|||||-.|...
T Consensus 88 ~~~gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 88 DAYGI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred CCCCc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 44332 2458999999999996 9999999999987654
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.37 E-value=4.5e-11 Score=129.32 Aligned_cols=235 Identities=14% Similarity=0.165 Sum_probs=144.0
Q ss_pred eeEEEEECCCCCCcEEEEecCCEEEEEEEecCC-CCceEEe-cCC--ccCCCCCCCCCCC-----ccccccCCCCeEEEE
Q 047497 50 TKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ-NNISIHW-HGI--RQLRSGWADGPAY-----ITQCPIQTGQSYVYN 120 (580)
Q Consensus 50 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~-HG~--~~~~~~~~DGv~~-----~tq~~i~PG~~~~Y~ 120 (580)
....+++||+. .|.+.+. |.++++||.|... ....+.+ .|. .+.. .||.+. +....|.|||+++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEEE
Confidence 34678999996 6998885 6799999999985 4556766 443 3333 788432 345668999999999
Q ss_pred EEECCCccceeEeeCcccccccc--------eeeEEEeCCC---CCCCC-----CCC-C------CCceeeeeecccc--
Q 047497 121 FTIVGQRGTLWWHAHLSWLRSTL--------YGPIIILPKR---GIPYP-----FTK-P------YKEVPIIFGEWFK-- 175 (580)
Q Consensus 121 f~~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~~~---~~~~~-----~~~-~------d~e~~l~~~d~~~-- 175 (580)
++. .+.|.++...-.... .|+ +-.+.|.... ....| .+. . .+.+.+.+..+..
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 997 456777776542211 111 1122333111 10110 000 0 0122333221100
Q ss_pred -------CChHHHHHH--------hhhcC-------C----CC--CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEE
Q 047497 176 -------ADPETIISQ--------ALQTG-------G----GP--NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYL 227 (580)
Q Consensus 176 -------~~~~~~~~~--------~~~~~-------~----~~--~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~r 227 (580)
......... ....| + .. .....++|||+.++. ..+.++++.|++++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~------~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM------NKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC------CCcceecCCCCEEE
Confidence 000000000 00000 0 00 000124899997632 34668899999999
Q ss_pred EEEEecCCCCeEEEEEcCceeeEEecCCCcCC---ceEEeEEEeCCCceEEEEEEcCCCC-CCceEEEEeccccC
Q 047497 228 LRLINAALNDELFFSIANHTLTVVEADAIYVK---PFETETLLIAPGQTTNVLLKTKPHY-PSATFFMKARPYVT 298 (580)
Q Consensus 228 lRliN~~~~~~~~~~i~gh~~~via~DG~~v~---P~~~d~l~l~pGeR~dv~v~~~~~~-~~g~y~i~~~~~~~ 298 (580)
|+|+|.+....+.|||||++|+|++.||.+.. +.+.|++.+.+ ++++++++++.+. ..|.|.++||-+..
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~H 511 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEH 511 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhh
Confidence 99999997667889999999999999999874 45789999976 8899999998542 12799999997543
No 26
>PRK10883 FtsI repressor; Provisional
Probab=99.26 E-value=2.9e-10 Score=121.89 Aligned_cols=223 Identities=13% Similarity=0.134 Sum_probs=136.2
Q ss_pred ceeEEEEECCCCCCcEEEEecCCEEEEEEEecCC-CCceEEe-cCCccCCCCCCCCCCC-----ccccccCCCCeEEEEE
Q 047497 49 NTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQ-NNISIHW-HGIRQLRSGWADGPAY-----ITQCPIQTGQSYVYNF 121 (580)
Q Consensus 49 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~-HG~~~~~~~~~DGv~~-----~tq~~i~PG~~~~Y~f 121 (580)
.....+++||+. .|.|.|+.| ++++||.|... ....+++ +|....... .||-+. +.+..|.||++++.-+
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345679999996 699999875 89999999996 4557888 555332221 685321 4557789999999999
Q ss_pred EECCCccceeEeeCccc-cccccee------------eEEEeCCCCCCCCCCCCCCceeeeeec--cccCChHHHHHHhh
Q 047497 122 TIVGQRGTLWWHAHLSW-LRSTLYG------------PIIILPKRGIPYPFTKPYKEVPIIFGE--WFKADPETIISQAL 186 (580)
Q Consensus 122 ~~~~~~Gt~wYH~H~~~-~~~Gl~G------------~liV~~~~~~~~~~~~~d~e~~l~~~d--~~~~~~~~~~~~~~ 186 (580)
+. .+.+.+.+++-... ....+.+ .+-++...... .. ....+..+.. ......... .+..
T Consensus 284 d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~-~~~~ 357 (471)
T PRK10883 284 DM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRS-REIS 357 (471)
T ss_pred EC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcce-EEEE
Confidence 97 55567777663211 1111111 11111111000 00 0000000000 000000000 0000
Q ss_pred hcCCCCCCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCc---eEE
Q 047497 187 QTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKP---FET 263 (580)
Q Consensus 187 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P---~~~ 263 (580)
.. .+.+.|||+.+.. ..+.++++.|++++|+|.|.. .+.||||+|.|+|++.||....| .+.
T Consensus 358 l~------~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwk 422 (471)
T PRK10883 358 LG------DDLPGINGALWDM------NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWK 422 (471)
T ss_pred ec------CCcCccCCcccCC------CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcC
Confidence 00 1223699998632 234578999999999998863 57899999999999999986543 467
Q ss_pred eEEEeCCCceEEEEEEcCCCCCCc---eEEEEeccccCC
Q 047497 264 ETLLIAPGQTTNVLLKTKPHYPSA---TFFMKARPYVTG 299 (580)
Q Consensus 264 d~l~l~pGeR~dv~v~~~~~~~~g---~y~i~~~~~~~~ 299 (580)
|+|.+. +++.|+++++... + .|.++||-+.-.
T Consensus 423 DTV~v~--~~v~i~~~f~~~~--~~~~~~m~HCHiLeHe 457 (471)
T PRK10883 423 DTVWVD--GQVELLVYFGQPS--WAHFPFLFYSQTLEMA 457 (471)
T ss_pred cEEEcC--CeEEEEEEecCCC--CCCCcEEeeccccccc
Confidence 999993 5799999999873 3 799999975443
No 27
>PLN02835 oxidoreductase
Probab=99.22 E-value=1.8e-09 Score=117.29 Aligned_cols=255 Identities=13% Similarity=0.100 Sum_probs=154.0
Q ss_pred eEEEEECCCCCCcEEEEecCCEEEEEEEecCCC-CceEEecCCccCCCCCCCCCCC----ccccccCCCCeEEEEEEECC
Q 047497 51 KSIISVNGKFPGPRIVAREGDQLLIKVMNHVQN-NISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYVYNFTIVG 125 (580)
Q Consensus 51 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~f~~~~ 125 (580)
...+++||+. .++++|++|+++++||.|.... ...+|+.|....-.. .||.+- +....|.||++++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4679999997 5899999999999999999854 567888888765432 799652 34466899999999999866
Q ss_pred CccceeEeeCccccc--ccceeeEEEeCCCC---CCCCC-CCCCC--------ceeeeeeccccCChH---H-H--H--H
Q 047497 126 QRGTLWWHAHLSWLR--STLYGPIIILPKRG---IPYPF-TKPYK--------EVPIIFGEWFKADPE---T-I--I--S 183 (580)
Q Consensus 126 ~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~---~~~~~-~~~d~--------e~~l~~~d~~~~~~~---~-~--~--~ 183 (580)
.+|.||.+.-..... ....+.|-.+.... .+.+. +..+. .....+......... . . . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 689999986321111 12223333322211 01111 00000 000001100000000 0 0 0 0
Q ss_pred Hhh-hcCCCC--CCCCeEEEcCCCCCCC---------------CCCC-------C-----ceeEEEEeCCCEEEEEEEec
Q 047497 184 QAL-QTGGGP--NVSDAYTINGLPGPLY---------------NCSA-------K-----DTFKLKVKPGKTYLLRLINA 233 (580)
Q Consensus 184 ~~~-~~~~~~--~~~~~~liNG~~~~~~---------------~~~~-------~-----~~~~l~v~~G~~~rlRliN~ 233 (580)
... ...... .....+.+||..+... .|.. . ..-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 000000 0013467888765310 0100 0 11235677789999999998
Q ss_pred CCCCeEEEEEcCceeeEEec-CCCc----------CCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccccCCCCC
Q 047497 234 ALNDELFFSIANHTLTVVEA-DAIY----------VKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPYVTGQGT 302 (580)
Q Consensus 234 ~~~~~~~~~i~gh~~~via~-DG~~----------v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~~~~~~~ 302 (580)
+.. .+.||||||.|+|++. +|.. ..|...|++.+.++..+-+-+++++| |.|.++||....
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP---G~Wl~HCHi~~H---- 500 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ---GMWNMRSAIWER---- 500 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC---EEeeeeecchhh----
Confidence 744 5679999999999987 5522 24889999999999999999999999 999999995321
Q ss_pred CCCcceEEEEEEec
Q 047497 303 FDNSTVAGILEYEK 316 (580)
Q Consensus 303 ~~~~~~~ail~y~~ 316 (580)
...+...++++..
T Consensus 501 -~~~Gm~~~~~V~~ 513 (539)
T PLN02835 501 -QYLGQQFYLRVWN 513 (539)
T ss_pred -hhcccEEEEEEcc
Confidence 1234455566553
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.21 E-value=3.7e-09 Score=115.79 Aligned_cols=240 Identities=14% Similarity=0.147 Sum_probs=144.1
Q ss_pred EEEEECCCCC---------CcEEEEecCCEEEEEEEecCC-CCceEEecCCccCCCCCCCCCCC----ccccccCCCCeE
Q 047497 52 SIISVNGKFP---------GPRIVAREGDQLLIKVMNHVQ-NNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSY 117 (580)
Q Consensus 52 ~~~~~Ng~~p---------gP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~ 117 (580)
..+++||+.- .++|.|++|+++++||.|... ....+|.+|....... .||++- +....|.||+++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 5689999841 148999999999999999974 4466888887665432 799752 345668999999
Q ss_pred EEEEEECCCccceeEeeCccc--c---c-ccceeeEEEeCCCCCCCCC----CCCCC-----c----e-eeeeecccc--
Q 047497 118 VYNFTIVGQRGTLWWHAHLSW--L---R-STLYGPIIILPKRGIPYPF----TKPYK-----E----V-PIIFGEWFK-- 175 (580)
Q Consensus 118 ~Y~f~~~~~~Gt~wYH~H~~~--~---~-~Gl~G~liV~~~~~~~~~~----~~~d~-----e----~-~l~~~d~~~-- 175 (580)
+..+++.+.+|.||.+.+... . . ..-.+.|...+......+. +..+. + . .+....+-.
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999998555899999987531 1 1 1122333332222111110 00000 0 0 000000000
Q ss_pred -CChH-HH---HHHhhhcCC-----C-CCCCCeEEEcCCCCCC--------------------C-------CC-CCC---
Q 047497 176 -ADPE-TI---ISQALQTGG-----G-PNVSDAYTINGLPGPL--------------------Y-------NC-SAK--- 213 (580)
Q Consensus 176 -~~~~-~~---~~~~~~~~~-----~-~~~~~~~liNG~~~~~--------------------~-------~~-~~~--- 213 (580)
.... .. +........ . ....-.+.|||..+.. + -| ++.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 0000 00 000000000 0 0000134677764210 0 00 000
Q ss_pred -------ceeEEEEeCCCEEEEEEEecCC--CCeEEEEEcCceeeEEecC-CCc-----------CCceEEeEEEeCCCc
Q 047497 214 -------DTFKLKVKPGKTYLLRLINAAL--NDELFFSIANHTLTVVEAD-AIY-----------VKPFETETLLIAPGQ 272 (580)
Q Consensus 214 -------~~~~l~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pGe 272 (580)
....+.++.|+++++.|.|.+. ...+.||||||.|+|++.. |.. ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1134788889999999999863 3367899999999999886 321 247788999999999
Q ss_pred eEEEEEEcCCCCCCceEEEEecc
Q 047497 273 TTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 273 R~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
-+-+-++++++ |.|.+|||-
T Consensus 486 ~vvirf~adNP---G~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADNP---GVWFMHCHL 505 (539)
T ss_pred eEEEEEecCCC---eEEEEEecc
Confidence 99999999999 999999995
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.13 E-value=1.6e-09 Score=116.50 Aligned_cols=233 Identities=17% Similarity=0.126 Sum_probs=148.6
Q ss_pred CceeEEEEECCCCCCcEEEEecCCEEEEEEEecC-CCCceEEecCCccCCCCCCCCCC----CccccccCCCCeEEEEEE
Q 047497 48 CNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHV-QNNISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYVYNFT 122 (580)
Q Consensus 48 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~f~ 122 (580)
+...+...+||+. -|.+.+ ++..+++||.|.. .....+++.|.+..... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceeec-CCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4566777888854 355544 5555999999998 66667777766555433 67755 566788999999999999
Q ss_pred ECCCccceeEeeCcccccccceeeEEEeCCCCCCCCC-------CCCC---CceeeeeeccccCChHHHHHHhhhcCCCC
Q 047497 123 IVGQRGTLWWHAHLSWLRSTLYGPIIILPKRGIPYPF-------TKPY---KEVPIIFGEWFKADPETIISQALQTGGGP 192 (580)
Q Consensus 123 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~-------~~~d---~e~~l~~~d~~~~~~~~~~~~~~~~~~~~ 192 (580)
. ...|++-+.+........+.+..-........++. ...| ......................... ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 55899999998722222222222211111000000 0011 1111111111111110000000000 00
Q ss_pred CCCCeEEEcCCCCCCCCCCCCceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcC---CceEEeEEEeC
Q 047497 193 NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYV---KPFETETLLIA 269 (580)
Q Consensus 193 ~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v---~P~~~d~l~l~ 269 (580)
.....+.+||+.++. ....+.++.|+++||+|.|-+. -.+.||+||+.|+|++.| ... .+..+|++.+.
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~ 411 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVA 411 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeC
Confidence 112457888887642 2467899999999999999997 667799999999999999 332 46789999999
Q ss_pred CCceEEEEEEcCCCCCCceEEEEecccc
Q 047497 270 PGQTTNVLLKTKPHYPSATFFMKARPYV 297 (580)
Q Consensus 270 pGeR~dv~v~~~~~~~~g~y~i~~~~~~ 297 (580)
+++++.+.++++.+ |.|.++||...
T Consensus 412 ~~~~~~v~~~a~~~---g~~~~HCH~l~ 436 (451)
T COG2132 412 PGERLLVRFDADYP---GPWMFHCHILE 436 (451)
T ss_pred CCeEEEEEEeCCCC---CceEEeccchh
Confidence 99999999999998 89999999643
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=98.91 E-value=2e-07 Score=101.40 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=143.8
Q ss_pred eEEEEECCCCC-CcEEEEecCCEEEEEEEecCCC-CceEEecCCccCCCCCCCCCC----CccccccCCCCeEEEEEEEC
Q 047497 51 KSIISVNGKFP-GPRIVAREGDQLLIKVMNHVQN-NISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYVYNFTIV 124 (580)
Q Consensus 51 ~~~~~~Ng~~p-gP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~f~~~ 124 (580)
...+++||+.+ .|+|.|++|+++++|+.|.... ...++..|....... .||.+ .+.+..|.|||+++..+++.
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35689999852 5799999999999999999854 456777777665543 78854 24557799999999999985
Q ss_pred CCc-c---ceeEeeCccccccccee-eEEEeCCCCCC--CCCC---CC-CC----ceeeee----eccccCCh-HH---H
Q 047497 125 GQR-G---TLWWHAHLSWLRSTLYG-PIIILPKRGIP--YPFT---KP-YK----EVPIIF----GEWFKADP-ET---I 181 (580)
Q Consensus 125 ~~~-G---t~wYH~H~~~~~~Gl~G-~liV~~~~~~~--~~~~---~~-d~----e~~l~~----~d~~~~~~-~~---~ 181 (580)
+++ | .||.+.-.......+.+ +++........ .|.+ .. +. +....+ .-...... .. .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 343 4 89998765211111112 33333222110 1111 00 00 110000 00000000 00 0
Q ss_pred ----HHHhh-hcCCC--CCCCCeEEEcCCCCCC----------CC-----CCC---C---------ceeEEEEeCCCEEE
Q 047497 182 ----ISQAL-QTGGG--PNVSDAYTINGLPGPL----------YN-----CSA---K---------DTFKLKVKPGKTYL 227 (580)
Q Consensus 182 ----~~~~~-~~~~~--~~~~~~~liNG~~~~~----------~~-----~~~---~---------~~~~l~v~~G~~~r 227 (580)
..... ..... ......+.|||..+.. +. -.+ . ..-.+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001246788876531 00 000 0 12236778899998
Q ss_pred EEEEecCCCCeEEEEEcCceeeEEec-----CC------CcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 228 LRLINAALNDELFFSIANHTLTVVEA-----DA------IYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 228 lRliN~~~~~~~~~~i~gh~~~via~-----DG------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
+=|-|... ..+.||||||.|+|++. |+ ++..|...|++.+.++.=+-|-+++++| |.|.+|||-
T Consensus 427 iViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ---GMWNVRSQK 501 (545)
T ss_pred EEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC---eEEeeeecC
Confidence 88888754 46779999999999976 21 2346889999999999999999999999 999999993
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.88 E-value=2e-07 Score=102.17 Aligned_cols=229 Identities=15% Similarity=0.122 Sum_probs=134.0
Q ss_pred cEEEEecCCEEEEEEEecC-CCCceEEecCCccCCCCCCCCCCC----ccccccCCCCeEEEEEEECCCc-cceeEeeCc
Q 047497 63 PRIVAREGDQLLIKVMNHV-QNNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYVYNFTIVGQR-GTLWWHAHL 136 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~f~~~~~~-Gt~wYH~H~ 136 (580)
++|.|++|+++++||.|.. .....++++|....... .||.+- +....|.|||+++..+++.+.+ |.||.+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 3589999999999999987 45566777777654432 788642 4456689999999999974334 589998765
Q ss_pred cccc--ccceeeEEEeCCC-CCCCC-C-----CCCCC-------ceeeeeeccccCChHHHHHH-h-hhcCCCCCCCCeE
Q 047497 137 SWLR--STLYGPIIILPKR-GIPYP-F-----TKPYK-------EVPIIFGEWFKADPETIISQ-A-LQTGGGPNVSDAY 198 (580)
Q Consensus 137 ~~~~--~Gl~G~liV~~~~-~~~~~-~-----~~~d~-------e~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 198 (580)
.... .....+++..... ....+ . +..+. +..++-.............. . ............+
T Consensus 282 ~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (541)
T TIGR03388 282 RGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKW 361 (541)
T ss_pred ccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEE
Confidence 4431 1111244443221 11100 0 00000 00000000000000000000 0 0000000011235
Q ss_pred EEcCCCCCC-------------------------CCCC-------C-----CceeEEEEeCCCEEEEEEEecCC-----C
Q 047497 199 TINGLPGPL-------------------------YNCS-------A-----KDTFKLKVKPGKTYLLRLINAAL-----N 236 (580)
Q Consensus 199 liNG~~~~~-------------------------~~~~-------~-----~~~~~l~v~~G~~~rlRliN~~~-----~ 236 (580)
.+||..+.. +.|. . ...-.+.++.|++|.+.|.|... .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 677765420 0000 0 01124788889999999999752 3
Q ss_pred CeEEEEEcCceeeEEecC-CCc-----------CCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 237 DELFFSIANHTLTVVEAD-AIY-----------VKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 237 ~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
..+.||+|||.|+|++.. |.+ ..|...|++.+.++.-+-|-+++++| |.|.+|||.
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP---G~W~~HCHi 509 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP---GVWAFHCHI 509 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC---eEeeeeccc
Confidence 467899999999999986 332 14778899999999999999999999 999999995
No 32
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.88 E-value=1.3e-07 Score=103.41 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=140.3
Q ss_pred EEEEECCCC---------------CCcEEEEecCCEEEEEEEecCCC-CceEEecCCc-cCCCCCCCCCCC----ccccc
Q 047497 52 SIISVNGKF---------------PGPRIVAREGDQLLIKVMNHVQN-NISIHWHGIR-QLRSGWADGPAY----ITQCP 110 (580)
Q Consensus 52 ~~~~~Ng~~---------------pgP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~-~~~~~~~DGv~~----~tq~~ 110 (580)
..+++||+. ..|+|+|++|+++++||.|.... ...+++.|.. ..... .||.+- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 468899983 13789999999999999999854 4567777765 33322 788742 34466
Q ss_pred cCCCCeEEEEEEECCC-------ccceeEeeCcccccccc--eeeEEEeCCCCCCCC---C-C--CC-C-----Cceeee
Q 047497 111 IQTGQSYVYNFTIVGQ-------RGTLWWHAHLSWLRSTL--YGPIIILPKRGIPYP---F-T--KP-Y-----KEVPII 169 (580)
Q Consensus 111 i~PG~~~~Y~f~~~~~-------~Gt~wYH~H~~~~~~Gl--~G~liV~~~~~~~~~---~-~--~~-d-----~e~~l~ 169 (580)
|.|||+++..+++.+. +|-||...-.......+ .|.|.-........+ . + .. . .+.-+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 8999999999998432 48899876432211112 333333212111111 0 0 00 0 011010
Q ss_pred -eecccc---CChHHHHHHh-hhcCC--CC-CCCCeEEEcCCCCCC--C---------C----C------------CCCc
Q 047497 170 -FGEWFK---ADPETIISQA-LQTGG--GP-NVSDAYTINGLPGPL--Y---------N----C------------SAKD 214 (580)
Q Consensus 170 -~~d~~~---~~~~~~~~~~-~~~~~--~~-~~~~~~liNG~~~~~--~---------~----~------------~~~~ 214 (580)
+..-.. ......-... ...+. .. .....+++||..+.. . . . ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 100000 0000000000 00000 00 011357788876531 0 0 0 0001
Q ss_pred eeEEEEeCCCEEEEEEEecC-------CCCeEEEEEcCceeeEEec-CCCc-----------CCceEEeEEEeC------
Q 047497 215 TFKLKVKPGKTYLLRLINAA-------LNDELFFSIANHTLTVVEA-DAIY-----------VKPFETETLLIA------ 269 (580)
Q Consensus 215 ~~~l~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------v~P~~~d~l~l~------ 269 (580)
.-.+.++.|+++++.|.|.. ....+.||+|||+|+||+. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12467888999999999975 2457889999999999985 4532 248889999884
Q ss_pred ----CCceEEEEEEcCCCCCCceEEEEecc
Q 047497 270 ----PGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 270 ----pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
++.-+-|.++++++ |.|.+|||-
T Consensus 491 ~~~~~~~~~~ir~~~dNP---G~W~~HCHi 517 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTNP---GVWMMHCHI 517 (538)
T ss_pred cccCCCceEEEEEEcCCC---eeEEEeccc
Confidence 77888899999998 999999995
No 33
>PLN02604 oxidoreductase
Probab=98.85 E-value=9.8e-09 Score=112.82 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=71.5
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEec
Q 047497 456 KLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLAD 535 (580)
Q Consensus 456 ~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~ad 535 (580)
+++.++.|+++++.+.|.. ....|+||+||... .+.. -.+. ...-....|+||+...++|+++
T Consensus 55 P~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~~--~~DG-----------~~~~tq~~i~pg~s~~y~f~~~ 117 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGTP--WFDG-----------TEGVTQCPILPGETFTYEFVVD 117 (566)
T ss_pred CcEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCCc--cccC-----------CCccccCccCCCCeEEEEEEcC
Confidence 4578899999999999963 23689999999842 1110 0000 0112345889999999999999
Q ss_pred CceeEEEEeechhhhhccceEEEEEecCC
Q 047497 536 NPGVWFMHCHLEVHTSWGLKMAWIVLDGK 564 (580)
Q Consensus 536 npG~wl~HCHil~H~d~GM~~~~~V~~~~ 564 (580)
++|.|.||||...|.+.||++.|.|.++.
T Consensus 118 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 118 RPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999999999999998654
No 34
>PLN02792 oxidoreductase
Probab=98.84 E-value=1.3e-06 Score=95.00 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=144.3
Q ss_pred eeEEEEECCCCC--CcEEEEecCCEEEEEEEecCCC-CceEEecCCccCCCCCCCCCC----CccccccCCCCeEEEEEE
Q 047497 50 TKSIISVNGKFP--GPRIVAREGDQLLIKVMNHVQN-NISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYVYNFT 122 (580)
Q Consensus 50 ~~~~~~~Ng~~p--gP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~f~ 122 (580)
....+++||+-. .++|.|++|+++++||.|.... ...+++.|....... .||.+ .++...|.|||+++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 346799999832 4799999999999999999854 467888887765433 78864 234566999999999999
Q ss_pred ECCCccceeEeeCccccccccee-eEEEeCCCCCCC---C-CCCC-CCceeeee---eccccC-----ChH----HH--H
Q 047497 123 IVGQRGTLWWHAHLSWLRSTLYG-PIIILPKRGIPY---P-FTKP-YKEVPIIF---GEWFKA-----DPE----TI--I 182 (580)
Q Consensus 123 ~~~~~Gt~wYH~H~~~~~~Gl~G-~liV~~~~~~~~---~-~~~~-d~e~~l~~---~d~~~~-----~~~----~~--~ 182 (580)
+.+.+|.||...........+.+ +|+-........ + .+.. +.....-. .++... ... .. +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 85567999998764321111222 222222211110 0 0000 00000000 000000 000 00 0
Q ss_pred H--Hhh-hcCCCCC--CCCeEEEcCCCCCC----------CCCCC------------------CceeEEEEeCCCEEEEE
Q 047497 183 S--QAL-QTGGGPN--VSDAYTINGLPGPL----------YNCSA------------------KDTFKLKVKPGKTYLLR 229 (580)
Q Consensus 183 ~--~~~-~~~~~~~--~~~~~liNG~~~~~----------~~~~~------------------~~~~~l~v~~G~~~rlR 229 (580)
. ... ....... ..-.+.|||..+.. +...+ .....+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 0000000 01235677775420 00000 01234678889999999
Q ss_pred EEecCCCCeEEEEEcCceeeEEecC-C----------CcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 230 LINAALNDELFFSIANHTLTVVEAD-A----------IYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 230 liN~~~~~~~~~~i~gh~~~via~D-G----------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
|-|.... .+.||||||.|+||+.- | +++.|...|++.+.++.=+-+-+.++++ |-|.+||+-
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP---GvW~~HCh~ 489 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV---GMWNLRSQF 489 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC---EEEeeeEcc
Confidence 9986543 56799999999999742 2 2336888999999999999999999999 999999984
No 35
>PLN02354 copper ion binding / oxidoreductase
Probab=98.84 E-value=1.9e-07 Score=101.83 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=144.7
Q ss_pred EEEEECCCCC------CcEEEEecCCEEEEEEEecCCC-CceEEecCCccCCCCCCCCCC----CccccccCCCCeEEEE
Q 047497 52 SIISVNGKFP------GPRIVAREGDQLLIKVMNHVQN-NISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYVYN 120 (580)
Q Consensus 52 ~~~~~Ng~~p------gP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~ 120 (580)
..++|||+.. -|+|.|++|++.++||.|.... ...+|..|....... .||++ .+....|.||++++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 3799999999999999999854 566888887765432 79975 2445669999999999
Q ss_pred EEECCCccceeEeeCccccc--ccceeeEEEeCCCCC---CCCCCCCCC--------ceeeeeeccccCC---hH-HH--
Q 047497 121 FTIVGQRGTLWWHAHLSWLR--STLYGPIIILPKRGI---PYPFTKPYK--------EVPIIFGEWFKAD---PE-TI-- 181 (580)
Q Consensus 121 f~~~~~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~~---~~~~~~~d~--------e~~l~~~d~~~~~---~~-~~-- 181 (580)
+++.+.+|.||......... ....|.|...+.... ..|....+. +...-+....... .. ..
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99855689999998743211 122333333332110 011000000 0000000000000 00 00
Q ss_pred H--HHh--hhcCC-CCCCCCeEEEcCCCCCC----------CCCC-C-------------------CceeEEEEeCCCEE
Q 047497 182 I--SQA--LQTGG-GPNVSDAYTINGLPGPL----------YNCS-A-------------------KDTFKLKVKPGKTY 226 (580)
Q Consensus 182 ~--~~~--~~~~~-~~~~~~~~liNG~~~~~----------~~~~-~-------------------~~~~~l~v~~G~~~ 226 (580)
. ... ..... .......+.|||..+.. +... + ...-.+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 00000 00001245678765420 0000 0 01124667788999
Q ss_pred EEEEEecCCCCeEEEEEcCceeeEEecCC-----------CcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 227 LLRLINAALNDELFFSIANHTLTVVEADA-----------IYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 227 rlRliN~~~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
.+-|.|.... .+.||||||.|+|++.-- ++..|...|++.+.++.=.-+-+++++| |-|.+|||-
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---GvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA---GMWNIRSEN 504 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC---eEEeeeccc
Confidence 9999997543 577999999999996632 1235888999999999999999999999 999999995
No 36
>PLN02991 oxidoreductase
Probab=98.84 E-value=4e-07 Score=98.83 Aligned_cols=240 Identities=11% Similarity=0.087 Sum_probs=143.4
Q ss_pred eEEEEECCCCCCcEEEEecCCEEEEEEEecCCC-CceEEecCCccCCCCCCCCCC----CccccccCCCCeEEEEEEECC
Q 047497 51 KSIISVNGKFPGPRIVAREGDQLLIKVMNHVQN-NISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYVYNFTIVG 125 (580)
Q Consensus 51 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~f~~~~ 125 (580)
-..+++||+...+++.|++|+++++||.|.... ...+++.|....... .||.+ .+.+..|.|||+++...++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 467899999766899999999999999999854 456777777665433 79965 245567899999999999866
Q ss_pred CccceeEeeCcccccccceeeEEEe--CCCC-CCCCCCC--CCCceeeeee---ccc-----cCC-hHH---H----HHH
Q 047497 126 QRGTLWWHAHLSWLRSTLYGPIIIL--PKRG-IPYPFTK--PYKEVPIIFG---EWF-----KAD-PET---I----ISQ 184 (580)
Q Consensus 126 ~~Gt~wYH~H~~~~~~Gl~G~liV~--~~~~-~~~~~~~--~d~e~~l~~~---d~~-----~~~-~~~---~----~~~ 184 (580)
..|.||.-.-.......+.+.-|++ .... ...+.+. .+.+...-.. ++. ... ... . +..
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 6889998765321111112222233 2211 0001110 0000000000 000 000 000 0 000
Q ss_pred hh-hcCCC--CCCCCeEEEcCCCCCC----------CCCCC-----------------CceeEEEEeCCCEEEEEEEecC
Q 047497 185 AL-QTGGG--PNVSDAYTINGLPGPL----------YNCSA-----------------KDTFKLKVKPGKTYLLRLINAA 234 (580)
Q Consensus 185 ~~-~~~~~--~~~~~~~liNG~~~~~----------~~~~~-----------------~~~~~l~v~~G~~~rlRliN~~ 234 (580)
.. ..... ....-.+.|||..+.. ++.++ ...-.+.++.|+++.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 00000 0001246678776421 00000 0112356677888888888865
Q ss_pred CCCeEEEEEcCceeeEEecC-C----------CcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 235 LNDELFFSIANHTLTVVEAD-A----------IYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 235 ~~~~~~~~i~gh~~~via~D-G----------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
.. .+.||||||.|+|++.. | +++.|...|++.+.++.=+-+-+++++| |.|.+|||-
T Consensus 429 ~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~W~~HCHi 496 (543)
T PLN02991 429 DI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV---GMWNLRSEL 496 (543)
T ss_pred CC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC---EEeeeeeCc
Confidence 43 67799999999999753 1 1235888999999999999999999999 999999995
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.70 E-value=1.3e-07 Score=84.62 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=71.4
Q ss_pred ceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcC-----------CceEEeEEEeCCCceEEEEEEcCC
Q 047497 214 DTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYV-----------KPFETETLLIAPGQTTNVLLKTKP 282 (580)
Q Consensus 214 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-----------~P~~~d~l~l~pGeR~dv~v~~~~ 282 (580)
....+.++.|++++|+|.|.+.. .+.||+||+.|+|++.++... .|...|++.+.+|+++.+.++++.
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 34789999999999999998855 677999999999999999873 688999999999999999999997
Q ss_pred CCCCceEEEEeccc
Q 047497 283 HYPSATFFMKARPY 296 (580)
Q Consensus 283 ~~~~g~y~i~~~~~ 296 (580)
+ |.|.++|+..
T Consensus 111 ~---G~w~~HCHi~ 121 (138)
T PF07731_consen 111 P---GPWLFHCHIL 121 (138)
T ss_dssp T---EEEEEEESSH
T ss_pred c---eEEEEEEchH
Confidence 7 9999999964
No 38
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.66 E-value=9e-08 Score=82.66 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=68.3
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+++.++.|+.|++.+.|.. ..++.+|+||...-- ..+... .... -.-.|.||+....+|.+
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~-----~~~~DG---~~~~-------~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPP-----SPWMDG---VPGV-------TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTT-----GGGGSG---GTTT-------SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeee-----eeecCC---cccc-------cceeEEeecceeeeEee
Confidence 45789999999999999964 478999999965310 000000 0000 01358899999999999
Q ss_pred cC-ceeEEEEeechhhhhccceEEEEEecC
Q 047497 535 DN-PGVWFMHCHLEVHTSWGLKMAWIVLDG 563 (580)
Q Consensus 535 dn-pG~wl~HCHil~H~d~GM~~~~~V~~~ 563 (580)
+. +|.|.||||...|...||.+.|.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999763
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.61 E-value=3.2e-06 Score=93.06 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=134.0
Q ss_pred ECCCCCCcEEEEecCCEEEEEEEecCC-CCceEEecCCccCCCCCCCCCCC----ccccccCCCCeEEEEEEECCCc-cc
Q 047497 56 VNGKFPGPRIVAREGDQLLIKVMNHVQ-NNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYVYNFTIVGQR-GT 129 (580)
Q Consensus 56 ~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~f~~~~~~-Gt 129 (580)
+||+.-..+|.|++|++.++|+.|... ....+++.|....-.. .||.+- +....|.|||+++..+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 444432237999999999999999974 4455777776655432 799652 3456689999999999985444 58
Q ss_pred eeEeeCccccc----ccceeeEEEe-CCCCCCCCC------CCCCC-----ceee-eeeccccC-ChHHHHHH-h-hhcC
Q 047497 130 LWWHAHLSWLR----STLYGPIIIL-PKRGIPYPF------TKPYK-----EVPI-IFGEWFKA-DPETIISQ-A-LQTG 189 (580)
Q Consensus 130 ~wYH~H~~~~~----~Gl~G~liV~-~~~~~~~~~------~~~d~-----e~~l-~~~d~~~~-~~~~~~~~-~-~~~~ 189 (580)
||-+.-..... .++ +++-. .......+. +..+. .... .+...... .....-.. . ....
T Consensus 298 y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred EEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 99987543321 232 33333 221110010 00000 0000 00000000 00000000 0 0000
Q ss_pred CCCCCCCeEEEcCCCCCCCC------------------------------CCC-------CceeEEEEeCCCEEEEEEEe
Q 047497 190 GGPNVSDAYTINGLPGPLYN------------------------------CSA-------KDTFKLKVKPGKTYLLRLIN 232 (580)
Q Consensus 190 ~~~~~~~~~liNG~~~~~~~------------------------------~~~-------~~~~~l~v~~G~~~rlRliN 232 (580)
........+.+||..+.... |.. ...-.+.++.|+++.+=|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 00000124566776431000 000 01124566779999999998
Q ss_pred cC-----CCCeEEEEEcCceeeEEecCC-C-----------cCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 233 AA-----LNDELFFSIANHTLTVVEADA-I-----------YVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 233 ~~-----~~~~~~~~i~gh~~~via~DG-~-----------~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
.. ....+.||+|||+|+||+..- . +..|...|++.+.++.=+-+-+++++| |-|.+|||-
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP---G~Wl~HCHi 532 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP---GVWFFHCHI 532 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC---EEEEEecCc
Confidence 75 245678999999999997642 2 225778999999999999999999999 999999995
No 40
>PRK02710 plastocyanin; Provisional
Probab=98.43 E-value=3.4e-06 Score=73.17 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=55.1
Q ss_pred CcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCcccccc
Q 047497 62 GPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLRS 141 (580)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~ 141 (580)
.+.|++++||+ |+++|....++++.+.|.... . -+...+.||++++|.|+. +|+|-|+|-.| ..+
T Consensus 46 P~~i~v~~Gd~--V~~~N~~~~~H~v~~~~~~~~----~-----~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDT--VKWVNNKLAPHNAVFDGAKEL----S-----HKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGA 110 (119)
T ss_pred CCEEEEcCCCE--EEEEECCCCCceEEecCCccc----c-----ccccccCCCCEEEEEecC---CEEEEEEcCCC-ccC
Confidence 48999999998 566788878888877643211 0 111347899999999973 89999999732 237
Q ss_pred cceeeEEEe
Q 047497 142 TLYGPIIIL 150 (580)
Q Consensus 142 Gl~G~liV~ 150 (580)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 41
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.41 E-value=2.7e-05 Score=85.45 Aligned_cols=228 Identities=17% Similarity=0.167 Sum_probs=131.4
Q ss_pred cEEEEecCCEEEEEEEecCC-CCceEEecCCccCCCCCCCCCC----CccccccCCCCeEEEEEEECCCcc-ceeEeeCc
Q 047497 63 PRIVAREGDQLLIKVMNHVQ-NNISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYVYNFTIVGQRG-TLWWHAHL 136 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~f~~~~~~G-t~wYH~H~ 136 (580)
++|.|++|++.++||.|... ....++..|....... .||.+ .+....|.|||+++.-+++.+.+| .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 58999999999999999984 4455777666554432 78864 234566999999999999844455 89986532
Q ss_pred c--c-c-cccceeeEEEeCCCCC-----CCCC-CCCCCceee------eee-----ccccCCh---HHH----HHHhh-h
Q 047497 137 S--W-L-RSTLYGPIIILPKRGI-----PYPF-TKPYKEVPI------IFG-----EWFKADP---ETI----ISQAL-Q 187 (580)
Q Consensus 137 ~--~-~-~~Gl~G~liV~~~~~~-----~~~~-~~~d~e~~l------~~~-----d~~~~~~---~~~----~~~~~-~ 187 (580)
. . . ..-+.|.-|++-.... +.|. +....+... .+. ....... ... +.... .
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 1 1 0 1112222233322111 1111 100001000 000 0000000 000 00000 0
Q ss_pred cCCCC-CC--CCeEEEcCCCCCC----------CCCCC-------C---------ceeEEEEeCCCEEEEEEEecCCCCe
Q 047497 188 TGGGP-NV--SDAYTINGLPGPL----------YNCSA-------K---------DTFKLKVKPGKTYLLRLINAALNDE 238 (580)
Q Consensus 188 ~~~~~-~~--~~~~liNG~~~~~----------~~~~~-------~---------~~~~l~v~~G~~~rlRliN~~~~~~ 238 (580)
.+... .+ --.+.|||..+.. ++.++ . ....+.++.+++|.+-|-|.. ...
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~-~~~ 454 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA-TNV 454 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-CCC
Confidence 00000 00 0235677765421 11111 0 123456777899999998865 346
Q ss_pred EEEEEcCceeeEEecCC-----------CcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 239 LFFSIANHTLTVVEADA-----------IYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 239 ~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
+.+|||||.|+|++... +++.|...|++.+.+|.=.-|-+++|++ |-|.||||-
T Consensus 455 HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNP---G~W~lHCH~ 519 (596)
T PLN00044 455 QSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNA---GIWNLRVEN 519 (596)
T ss_pred CCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCC---EEehhhccC
Confidence 78999999999997643 2346888999999999999999999999 999999993
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.28 E-value=2.1e-06 Score=72.68 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccc
Q 047497 59 KFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSW 138 (580)
Q Consensus 59 ~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 138 (580)
++-...|+++.|++|+|+++|.....+.+...++... -.|.||++.++.|+. .++|+|=|+|-.++
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC
Confidence 4434699999999999999999988877776664332 358999999999985 89999999999776
Q ss_pred ccccceeeEEE
Q 047497 139 LRSTLYGPIII 149 (580)
Q Consensus 139 ~~~Gl~G~liV 149 (580)
. |.|-|+|
T Consensus 97 --~-m~G~liV 104 (104)
T PF13473_consen 97 --N-MKGTLIV 104 (104)
T ss_dssp --T-TB-----
T ss_pred --c-ceecccC
Confidence 2 7777776
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.24 E-value=5.6e-06 Score=69.36 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCc--cccccCCCCeEEEEEEECCCccceeEeeCcc
Q 047497 60 FPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYI--TQCPIQTGQSYVYNFTIVGQRGTLWWHAHLS 137 (580)
Q Consensus 60 ~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 137 (580)
|-...|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|+. +|+|.|||. .
T Consensus 14 F~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~ 86 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-P 86 (99)
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-C
Confidence 33478999999985 56688777888877654322110 0111111 22346899999998873 999999998 3
Q ss_pred cccccceeeEEEe
Q 047497 138 WLRSTLYGPIIIL 150 (580)
Q Consensus 138 ~~~~Gl~G~liV~ 150 (580)
...+||.|.|+|+
T Consensus 87 H~~aGM~G~I~V~ 99 (99)
T TIGR02656 87 HRGAGMVGKITVE 99 (99)
T ss_pred ccccCCEEEEEEC
Confidence 3347999999985
No 44
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.08 E-value=2.2e-05 Score=63.38 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=53.7
Q ss_pred CcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCcccccc
Q 047497 62 GPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLRS 141 (580)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~ 141 (580)
.+.|++++||+| +++|....++++++.........+.. ..+.||+++++.|+ ++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf~---~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTFT---EAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEECC---CCEEEEEEcCCCC---
Confidence 479999999995 56898888889887653211111111 12578888887774 6999999998776
Q ss_pred cceeeEEEe
Q 047497 142 TLYGPIIIL 150 (580)
Q Consensus 142 Gl~G~liV~ 150 (580)
.|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 599999985
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.05 E-value=1.4e-05 Score=66.95 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=54.8
Q ss_pred CcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCC-CCCCccccccCCCCeEEEEEEECCCccceeEeeCccccc
Q 047497 62 GPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWAD-GPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR 140 (580)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~ 140 (580)
...|++++||+ |++.|....++++.+=--........+ ..+......+.||+++++.|+ .+|+|.|+|-. ...
T Consensus 16 P~~i~V~~G~t--V~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~ 89 (99)
T PF00127_consen 16 PSEITVKAGDT--VTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYE 89 (99)
T ss_dssp SSEEEEETTEE--EEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGG
T ss_pred CCEEEECCCCE--EEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Ccc
Confidence 47999999998 567777767777666431110000000 000002234789999999997 69999999984 444
Q ss_pred ccceeeEEEe
Q 047497 141 STLYGPIIIL 150 (580)
Q Consensus 141 ~Gl~G~liV~ 150 (580)
+||.|.|+|+
T Consensus 90 ~GM~G~i~V~ 99 (99)
T PF00127_consen 90 AGMVGTIIVE 99 (99)
T ss_dssp TTSEEEEEEE
T ss_pred cCCEEEEEEC
Confidence 7999999995
No 46
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.00 E-value=3.1e-05 Score=69.56 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=58.3
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCccccCCcE--EEEEeccCcCCCCCCCCCCCCCCCCccceEeeCC---C--cEE
Q 047497 456 KLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNF--FVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPS---G--GWV 528 (580)
Q Consensus 456 ~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F--~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~---g--~~v 528 (580)
+.+.++.|++|++++.|... ...|.|-||.+.- .....-.| .+..-..-.+|+ | ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~~p~mdG--------------~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPYMPGMDG--------------LGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccccccccCC--------------CCccccCcccCCCCCCcccee
Confidence 56889999999999999642 3566666653221 11000000 011111112222 2 246
Q ss_pred EEEEEecCceeEEEEeechhhhhccceEEEEEe
Q 047497 529 AIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 529 ~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
.+.|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 788888899999999999999999999999873
No 47
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=0.00089 Score=72.89 Aligned_cols=241 Identities=15% Similarity=0.136 Sum_probs=136.3
Q ss_pred eEEEEECCCCCC-----cEEEEecCCEEEEEEEecC-CCCceEEecCCccCCCCCCCCC---CC-ccccccCCCCeEEEE
Q 047497 51 KSIISVNGKFPG-----PRIVAREGDQLLIKVMNHV-QNNISIHWHGIRQLRSGWADGP---AY-ITQCPIQTGQSYVYN 120 (580)
Q Consensus 51 ~~~~~~Ng~~pg-----P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv---~~-~tq~~i~PG~~~~Y~ 120 (580)
-+...+||+-.- +++.+++|++.++|+.|.. .....+..-|....... .||. |. ..-.-|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEE
Confidence 467899998521 6899999999999999986 33444444444433321 6773 22 223558999999999
Q ss_pred EEECCCccceeEeeCcccccc----cceeeEEEeCCCCC-----CCC----CCC-CCCceeeeeec----c----ccCCh
Q 047497 121 FTIVGQRGTLWWHAHLSWLRS----TLYGPIIILPKRGI-----PYP----FTK-PYKEVPIIFGE----W----FKADP 178 (580)
Q Consensus 121 f~~~~~~Gt~wYH~H~~~~~~----Gl~G~liV~~~~~~-----~~~----~~~-~d~e~~l~~~d----~----~~~~~ 178 (580)
.++.+.++.||+-...-.+.. =+.+..+++-.... ..+ .+. .+....+-+.. . +....
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 998777889999877644421 22333333322210 000 000 00000000000 0 00000
Q ss_pred -HHHHHHhh---------hcCC-CCCCCCeEEEcCCCC---------------------CCCCCCC----------Ccee
Q 047497 179 -ETIISQAL---------QTGG-GPNVSDAYTINGLPG---------------------PLYNCSA----------KDTF 216 (580)
Q Consensus 179 -~~~~~~~~---------~~~~-~~~~~~~~liNG~~~---------------------~~~~~~~----------~~~~ 216 (580)
..+..+.. .... .........||+... ..+.|.. ...-
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 00000000 0000 000011233444311 0111221 1223
Q ss_pred EEEEeCCCEEEEEEEecCCCC--eEEEEEcCceeeEEecCCC-------------cCCceEEeEEEeCCCceEEEEEEcC
Q 047497 217 KLKVKPGKTYLLRLINAALND--ELFFSIANHTLTVVEADAI-------------YVKPFETETLLIAPGQTTNVLLKTK 281 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~-------------~v~P~~~d~l~l~pGeR~dv~v~~~ 281 (580)
.+.++-+..+-+=|-|.+... .+.+|||||.|+|++.+.+ ...|...+++.|.||.=.-|.+.++
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 467777888888888887443 3457999999999999432 1246778999999999999999999
Q ss_pred CCCCCceEEEEecc
Q 047497 282 PHYPSATFFMKARP 295 (580)
Q Consensus 282 ~~~~~g~y~i~~~~ 295 (580)
++ |-|.||||-
T Consensus 511 NP---G~W~~HCHi 521 (563)
T KOG1263|consen 511 NP---GVWLMHCHI 521 (563)
T ss_pred CC---cEEEEEEec
Confidence 99 999999995
No 48
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.92 E-value=3.7e-05 Score=70.49 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=77.3
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
...+.++.|++++|.|.|.+. ...+.|++.||+|+|++.... ...|...|++.|.+|+.+-|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 457899999999999999763 468999999999999998522 123778899999999999999999
Q ss_pred cC-ceeEEEEe----echhhhhccceEEEEEec
Q 047497 535 DN-PGVWFMHC----HLEVHTSWGLKMAWIVLD 562 (580)
Q Consensus 535 dn-pG~wl~HC----Hil~H~d~GM~~~~~V~~ 562 (580)
+. +|.|.++| +...+...|+...+.+-+
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667788888888776643
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=5.1e-05 Score=82.04 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=71.1
Q ss_pred eecCCcee--EEEEECCCCCCcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEE
Q 047497 44 VTRLCNTK--SIISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNF 121 (580)
Q Consensus 44 ~~~~g~~~--~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f 121 (580)
+..+|... .+.+..-.|--+.|+|++||+|+++|+|.....=.+ ||+.++.. |+ +.-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEEE
Confidence 44566443 455666777557899999999999999964311111 67766542 12 13478999999999
Q ss_pred EECCCccceeEeeCccc--ccccceeeEEEeCC
Q 047497 122 TIVGQRGTLWWHAHLSW--LRSTLYGPIIILPK 152 (580)
Q Consensus 122 ~~~~~~Gt~wYH~H~~~--~~~Gl~G~liV~~~ 152 (580)
++ +++|.|||||..-- .-.+|.|.|+|+++
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 96 99999999998632 22699999999874
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.78 E-value=0.00059 Score=61.53 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=72.9
Q ss_pred EEEEECCCCCC-cEEEEecCCEEEEEEEecCCCCceEEecCCc--cC--CCCCCCCCC----Ccc-----ccccCCCCeE
Q 047497 52 SIISVNGKFPG-PRIVAREGDQLLIKVMNHVQNNISIHWHGIR--QL--RSGWADGPA----YIT-----QCPIQTGQSY 117 (580)
Q Consensus 52 ~~~~~Ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~--~~--~~~~~DGv~----~~t-----q~~i~PG~~~ 117 (580)
..+-|||+..| ++|.+-.|-+|.|+|.|....++++-.-=-. .+ +....||.. |.+ -..|.+|++.
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 34778998888 8999999999999999999877775541111 11 112246632 222 1345678885
Q ss_pred EEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCC
Q 047497 118 VYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRG 154 (580)
Q Consensus 118 ~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 154 (580)
.=.|+ +-++|+|||-|-.-+.. +||+|-+||...-.
T Consensus 153 sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 153 SGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred EEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 55555 47999999999988776 89999999987654
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.60 E-value=0.00066 Score=62.64 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=75.0
Q ss_pred EEEEECCCCCC-cEEEEecCCEEEEEEEecCCCCceEEe--cCCccCC--CCCCCCCC----C-----ccccccCCCCeE
Q 047497 52 SIISVNGKFPG-PRIVAREGDQLLIKVMNHVQNNISIHW--HGIRQLR--SGWADGPA----Y-----ITQCPIQTGQSY 117 (580)
Q Consensus 52 ~~~~~Ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~~iH~--HG~~~~~--~~~~DGv~----~-----~tq~~i~PG~~~ 117 (580)
..+-|||..-| ++|.+-.|-+|.|+++|...-++++-. -+-.++. .-..||.. | .+-..|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47788998877 799999999999999998765555322 2222111 22355521 1 122468899999
Q ss_pred EEEEEECCCccceeEeeCccccc-ccceeeEEEeCCCCCC
Q 047497 118 VYNFTIVGQRGTLWWHAHLSWLR-STLYGPIIILPKRGIP 156 (580)
Q Consensus 118 ~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~ 156 (580)
.-.|.. -++|+|||-|-.-+.. +||++-|+|.+.-..+
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~P 192 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTVP 192 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcccc
Confidence 877763 6899999999998877 8999999999775433
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.48 E-value=0.00042 Score=58.00 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=56.8
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|++|+|+ |.+ ...|-+.++...+..-. .........+++.+.||....+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGV--------------KELAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCccch--------------hhhcccccccccccCCCCEEEEEeCC--
Confidence 5788999999987 432 36777776543221100 00001123467888999998887665
Q ss_pred ceeEEEEeechhhhhccceEEEEEe
Q 047497 537 PGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 537 pG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
+|.|.|||- .|..+||.+.+.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.37 E-value=0.0013 Score=56.41 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=48.5
Q ss_pred CcEEEEecCCEEEEEEEecCCCCceEEe-cCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccccc
Q 047497 62 GPRIVAREGDQLLIKVMNHVQNNISIHW-HGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLR 140 (580)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~ 140 (580)
...|+|++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.| +.+|+|=|+|-. ...
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~p-H~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTP-HYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCC-Ccc
Confidence 4789999999955555443 466554 2211 122211 1124577666666 468999999972 234
Q ss_pred ccceeeEEEeCCC
Q 047497 141 STLYGPIIILPKR 153 (580)
Q Consensus 141 ~Gl~G~liV~~~~ 153 (580)
+||.|.|+|.++.
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 7999999998853
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.34 E-value=0.0012 Score=57.13 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=55.0
Q ss_pred cEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccccccc
Q 047497 63 PRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLRST 142 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~G 142 (580)
-.|++++||+ |++.|.....++++.-+...+ +|. ......+|+++++.|. .+|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~~-----~g~---~~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMDP-----EGS---GTLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCCc-----ccc---cccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 5899999999 889999988988877666521 222 1133455677777775 4999999996432 269
Q ss_pred ceeeEEEeC
Q 047497 143 LYGPIIILP 151 (580)
Q Consensus 143 l~G~liV~~ 151 (580)
|.|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.07 E-value=0.0023 Score=55.84 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=47.4
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|+.|+|++.|.+ +.+|.|-++++.+ ...+++|+...|+|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 478999999999999864 3567666665421 236889999999999999
Q ss_pred ceeEEEEeec
Q 047497 537 PGVWFMHCHL 546 (580)
Q Consensus 537 pG~wl~HCHi 546 (580)
||.|-|||-+
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999965
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.99 E-value=0.0045 Score=52.95 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCcEEEEecCCEEEEEEEecC-CCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccc
Q 047497 60 FPGPRIVAREGDQLLIKVMNHV-QNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSW 138 (580)
Q Consensus 60 ~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 138 (580)
|-...|+|++||+ |+++|.. ..++++..-+ ... .| .......+|++|+|.|. ++|+|=|+|-.|
T Consensus 39 F~P~~ltV~~GdT--Vtw~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH- 103 (115)
T TIGR03102 39 FDPPAIRVDPGTT--VVWEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH- 103 (115)
T ss_pred EeCCEEEECCCCE--EEEEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCC-
Confidence 3347899999999 5577544 5677765421 011 11 01123578999999995 589999999754
Q ss_pred ccccceeeEEEe
Q 047497 139 LRSTLYGPIIIL 150 (580)
Q Consensus 139 ~~~Gl~G~liV~ 150 (580)
...||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 336899999985
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.81 E-value=0.0051 Score=51.39 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=54.4
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEec
Q 047497 456 KLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLAD 535 (580)
Q Consensus 456 ~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~ad 535 (580)
..+.++.|++|.|+..+. ..|.+.+ ...+ +.......... ..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~~-----~~Hnv~~-------~~~~---~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDS-----MPHNVVF-------VADG---MPAGADSDYVP----PGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEESS-----SSBEEEE-------ETTS---SHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECCC-----CCceEEE-------eccc---ccccccccccC----ccccceecCCCCEEEEEeC--
Confidence 357899999999987632 5565543 2211 00000000000 0115667889998777777
Q ss_pred CceeEEEEeechhhhhccceEEEEEe
Q 047497 536 NPGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 536 npG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
.+|.|.|+|- - |...||-+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 4 9999999999884
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.53 E-value=0.0097 Score=64.84 Aligned_cols=78 Identities=17% Similarity=0.326 Sum_probs=59.4
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
-+.++.|+.|++++.|.....+..|-|-+-++.. -+.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 4679999999999999543335677777644432 125678999999999999
Q ss_pred ceeEEEEeechhhh-hccceEEEEEec
Q 047497 537 PGVWFMHCHLEVHT-SWGLKMAWIVLD 562 (580)
Q Consensus 537 pG~wl~HCHil~H~-d~GM~~~~~V~~ 562 (580)
||.|.+||...-|. +.+|...+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999884433 348999998864
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.06 E-value=0.021 Score=48.11 Aligned_cols=61 Identities=15% Similarity=0.314 Sum_probs=40.2
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|+.+.+++.|.+. ..|-|.+.+. .-...+++|+...+.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~----------------------------~~~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDS---RPHEFVIPDL----------------------------GISKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-SS---S-EEEEEGGG----------------------------TEEEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECCC---CcEEEEECCC----------------------------ceEEEECCCCEEEEEEcCCC
Confidence 5789999999999999652 3344443331 12368899999999999999
Q ss_pred ceeEEEEeechh
Q 047497 537 PGVWFMHCHLEV 548 (580)
Q Consensus 537 pG~wl~HCHil~ 548 (580)
||.|-|+|-+-.
T Consensus 85 ~G~y~~~C~~~~ 96 (104)
T PF13473_consen 85 PGEYEFYCTMHP 96 (104)
T ss_dssp -EEEEEB-SSS-
T ss_pred CEEEEEEcCCCC
Confidence 999999999444
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.85 E-value=0.03 Score=48.51 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=50.0
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|++|+|+ |.+ ...|.+.+.+... + ......+.+|....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~---------------~~~~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L---------------SHKDLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c---------------cccccccCCCCEEEEEecC--
Confidence 4688899999986 322 3578775442110 0 0112356788887766665
Q ss_pred ceeEEEEeechhhhhccceEEEEEe
Q 047497 537 PGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 537 pG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
||.+.|+|= .|...||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999883
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.23 E-value=0.13 Score=44.05 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCcEEEEEEEecCceeEEEEeechhhhhccceEEEEEecC
Q 047497 524 SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDG 563 (580)
Q Consensus 524 ~g~~v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 563 (580)
++... .++++.+|.+-|+|= .|...||-+.+.|.++
T Consensus 54 ~g~~~--~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEEY--TVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCEE--EEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 44444 455578999999998 9999999999999875
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.02 E-value=0.097 Score=46.46 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=62.3
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecCc
Q 047497 458 VVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADNP 537 (580)
Q Consensus 458 ~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adnp 537 (580)
..++.|++++.++.|... .-|=|=+- ++....+ .+.-. ....-..---..++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~~--~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNLE--HVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccch--hHHHh---hhCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 456679999999998642 34443332 1111110 00000 0000011123568999999999999999999
Q ss_pred eeEEEEeechhhhhccceEEEEEe
Q 047497 538 GVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 538 G~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
|.+-|-|-|-+|-+.||-..|.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999884
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.77 Score=40.88 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=64.0
Q ss_pred CCCCcEEEEecCCEEEEEEEecCCC-----------CceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCc
Q 047497 59 KFPGPRIVAREGDQLLIKVMNHVQN-----------NISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQR 127 (580)
Q Consensus 59 ~~pgP~i~v~~Gd~v~v~l~N~l~~-----------~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~ 127 (580)
.+++-.++++.|++++..+.|...- +...--|...... +++- ......+.||++-+..|.. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 4577799999999999999997521 1112223333332 3331 1123558999999999997 789
Q ss_pred cceeEeeCccccc-ccceeeEEEeC
Q 047497 128 GTLWWHAHLSWLR-STLYGPIIILP 151 (580)
Q Consensus 128 Gt~wYH~H~~~~~-~Gl~G~liV~~ 151 (580)
|.|=+-|-..+.+ +||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999988 89999998864
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.58 E-value=0.5 Score=40.90 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=50.0
Q ss_pred CcEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCcc-ccc
Q 047497 62 GPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLS-WLR 140 (580)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~~~ 140 (580)
.+.|++..|++|++.+++. +.- ||..++.. ++ +.-+-||......|++ +++|+|++.|..- +..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DVi-----Hsf~ip~~-------~~-k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVI-----HSFWIPEL-------GI-KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS------EEEEETTC-------TE-EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-Ccc-----cccccccc-------Cc-ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 4799999999999999995 222 33333321 11 2346799999999997 8999999999852 222
Q ss_pred -ccceeeEEE
Q 047497 141 -STLYGPIII 149 (580)
Q Consensus 141 -~Gl~G~liV 149 (580)
+-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 567777665
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.94 E-value=0.52 Score=40.52 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=55.3
Q ss_pred CcEEEEec-CCEEEEEEEecCCCCceEEecCCccCCCCCCC---------C-----CCC-----ccc-cccCCCCeEEEE
Q 047497 62 GPRIVARE-GDQLLIKVMNHVQNNISIHWHGIRQLRSGWAD---------G-----PAY-----ITQ-CPIQTGQSYVYN 120 (580)
Q Consensus 62 gP~i~v~~-Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~D---------G-----v~~-----~tq-~~i~PG~~~~Y~ 120 (580)
=..|.|.. |.+|.|+|+|....+-..--|-+-.....-++ | +|. +.. -.|.|||+-+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 36899998 47999999998544322222321111100011 1 221 011 237899999999
Q ss_pred EEECC-Cccc-eeEeeCcccccccceeeEE
Q 047497 121 FTIVG-QRGT-LWWHAHLSWLRSTLYGPII 148 (580)
Q Consensus 121 f~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 148 (580)
|+++. ++|+ |-|-|-.-+..+.|.|.+.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 99853 6886 9999998888888888875
No 66
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.93 E-value=0.61 Score=39.94 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=47.5
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|++|.|+.++. ...|-.. ..+.+.|+. ......+|....+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--cC
Confidence 47889999999986542 1344432 222122321 111234565555555 78
Q ss_pred ceeEEEEeechhhhhccceEEEEEe
Q 047497 537 PGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 537 pG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
||.+-|+|= .|..+||-+.+.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999998 89999999999884
No 67
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=91.82 E-value=1 Score=36.02 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|++|.|+ |.. ...|-.+.+.-.+ +.. .+. .-.+.+|.... ++++.
T Consensus 12 ~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~--------------~~~-~~~~~~g~~~~--~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEA--------------ALK-GPMMKKEQAYS--LTFTE 62 (83)
T ss_pred EEEECCCCEEEEE--ECC---CCCccEEecCCCC-------ccc--------------ccc-ccccCCCCEEE--EECCC
Confidence 5788899999985 332 3678877643211 000 011 11234555444 46688
Q ss_pred ceeEEEEeechhhhhccceEEEEEe
Q 047497 537 PGVWFMHCHLEVHTSWGLKMAWIVL 561 (580)
Q Consensus 537 pG~wl~HCHil~H~d~GM~~~~~V~ 561 (580)
||.|.|||=+ |- +|-+.+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999986 54 588888773
No 68
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=91.38 E-value=1.4 Score=45.67 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCCcEEEEecCCEEEEEEEecCCCCceEEec-CCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCcc
Q 047497 59 KFPGPRIVAREGDQLLIKVMNHVQNNISIHWH-GIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLS 137 (580)
Q Consensus 59 ~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~H-G~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 137 (580)
.+--..+.+..|+ +.+.|+|....++..-.- |-.+- . ..-.|.||.+..+.+++ .+|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv-----~-----e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVV-----E-----ERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEeecccccc-----c-----cccccCCCCceEEEEec--CCceEEeecCcC
Confidence 4545799999996 899999998776442111 11110 0 11368999999988776 699999999332
Q ss_pred cccccceeeEEEeCCC
Q 047497 138 WLRSTLYGPIIILPKR 153 (580)
Q Consensus 138 ~~~~Gl~G~liV~~~~ 153 (580)
..+.|.|+|....
T Consensus 107 ---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 ---TNPKGKLIVKGEA 119 (375)
T ss_pred ---CCCCceEEEeCCC
Confidence 3358899998654
No 69
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=90.97 E-value=2.9 Score=39.01 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=60.8
Q ss_pred CCceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCC--C-C--CCCCCCccceEeeCCCcE
Q 047497 453 NGTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPT--K-F--NLVDPVERNTVGVPSGGW 527 (580)
Q Consensus 453 ~~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~--~-~--~~~~p~~rDTv~vp~g~~ 527 (580)
.+...+.++.|-.|.+.+.|.+ .+.| .|-|+..+........... + . -...+.--..--+.+|..
T Consensus 83 ~G~m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 83 NGQMTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CCcEEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 3455688999999999999964 3554 5677754421111000000 0 0 000000000112235556
Q ss_pred EEEEEEecCceeEEEEeechhhhhccceEEEEEecC
Q 047497 528 VAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDG 563 (580)
Q Consensus 528 v~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 563 (580)
...-+..-.||.+.+=|-|.-|...||-..+.|.+.
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 655565667999999999999999999999998654
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.47 E-value=3.7 Score=35.50 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=53.6
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+.+.++.|+.+.+.+.+.. ..|.|.+-+.... +.+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D----ViHsf~ip~~~~k----------------------------~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED----VIHSFWIPELGIK----------------------------MDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS----S-EEEEETTCTEE----------------------------EEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcCC----ccccccccccCcc----------------------------cccccccceeeeeee
Confidence 44688999999999999853 6787777654432 256788999999999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEE
Q 047497 535 DNPGVWFMHCHLEVHT-SWGLKMAWIV 560 (580)
Q Consensus 535 dnpG~wl~HCHil~H~-d~GM~~~~~V 560 (580)
+.||.+-..|...=.. +.-|...+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999886544 3445555554
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.18 E-value=1 Score=36.04 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=30.5
Q ss_pred EEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCC---ccccccCCCCeEEEEEEECCC---ccceeE
Q 047497 64 RIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAY---ITQCPIQTGQSYVYNFTIVGQ---RGTLWW 132 (580)
Q Consensus 64 ~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~---~tq~~i~PG~~~~Y~f~~~~~---~Gt~wY 132 (580)
+|+..-|++..+.|.|...+.+ . .|++|-.. +.+..|.||++.+|+++.+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~v---------w--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKEV---------W--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--EE---------E--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCEE---------E--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 5555555555555554432211 1 46777643 344668999999999999733 688864
No 72
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=86.67 E-value=7.1 Score=31.18 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=37.8
Q ss_pred EEEEEEEecCCCCeEEEEEc-Cce--eeEEecCCCcC------C--ceEEeEEEeCCCceEEEEEEcCCCCC-CceEEEE
Q 047497 225 TYLLRLINAALNDELFFSIA-NHT--LTVVEADAIYV------K--PFETETLLIAPGQTTNVLLKTKPHYP-SATFFMK 292 (580)
Q Consensus 225 ~~rlRliN~~~~~~~~~~i~-gh~--~~via~DG~~v------~--P~~~d~l~l~pGeR~dv~v~~~~~~~-~g~y~i~ 292 (580)
...|++.|.+. ..+.|.+. |+. |.|...+|..+ + -+......|.|||...+-.+.+.... .|.|.+.
T Consensus 3 ~~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 35688888884 44557765 554 45555677766 1 23457889999999999988886531 3999886
Q ss_pred e
Q 047497 293 A 293 (580)
Q Consensus 293 ~ 293 (580)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 73
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.50 E-value=3 Score=39.60 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=55.0
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEec
Q 047497 456 KLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLAD 535 (580)
Q Consensus 456 ~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~ad 535 (580)
+.+.++.|+.|++.+.+.+ ..|.|.+-+... -..+-||....+.|.++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~----------------------------k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPELGG----------------------------KIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhcccccccCc----------------------------eEEecCCcEEEEEEEeC
Confidence 4578999999999998743 455544432211 12355789999999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 047497 536 NPGVWFMHCHLEVHT-SWGLKMAWIVLDG 563 (580)
Q Consensus 536 npG~wl~HCHil~H~-d~GM~~~~~V~~~ 563 (580)
.||.+...|...-.. +..|...++|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 999999999884322 3678888888764
No 74
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.62 E-value=49 Score=35.18 Aligned_cols=178 Identities=12% Similarity=0.227 Sum_probs=102.9
Q ss_pred EEEecCCE--EEEEEEecCCC--CceEEecCCccC-CCCCCCCCCCccccccCCCCeEEEEEEEC----CCccceeEeeC
Q 047497 65 IVAREGDQ--LLIKVMNHVQN--NISIHWHGIRQL-RSGWADGPAYITQCPIQTGQSYVYNFTIV----GQRGTLWWHAH 135 (580)
Q Consensus 65 i~v~~Gd~--v~v~l~N~l~~--~~~iH~HG~~~~-~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~----~~~Gt~wYH~H 135 (580)
+.+.++++ +.|++.|+-.+ ...+-.-|+.-. ...+.+|--.++...+.||++.+....+- -.+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 55666665 66788888743 444555555322 12334666678888899999988888772 124443
Q ss_pred cccccccceeeEEEeCCCCCCCCCCCCCCceeeeeeccccCChHHHHHHhhhcCCCCCCCCeEEEcCCCCCCCCCCCCce
Q 047497 136 LSWLRSTLYGPIIILPKRGIPYPFTKPYKEVPIIFGEWFKADPETIISQALQTGGGPNVSDAYTINGLPGPLYNCSAKDT 215 (580)
Q Consensus 136 ~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~ 215 (580)
-..|+-.... ...++.++-+.- .|.. ....-+-||.
T Consensus 353 ---------nv~I~A~s~s------~v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------ 388 (513)
T COG1470 353 ---------NVTITASSSS------GVTRELPLKIKN---------------TGSY--NELVKLDNGP------------ 388 (513)
T ss_pred ---------eEEEEEeccc------cceeeeeEEEEe---------------cccc--ceeEEccCCc------------
Confidence 3333332221 113444444432 0100 0122233444
Q ss_pred eEEEEeCCC--EEEEEEEecCCCC--eEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCce--EEEEEEcCCCCCCceE
Q 047497 216 FKLKVKPGK--TYLLRLINAALND--ELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQT--TNVLLKTKPHYPSATF 289 (580)
Q Consensus 216 ~~l~v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR--~dv~v~~~~~~~~g~y 289 (580)
..+++.+|+ ..+++|-|.|+.. -..+.+++-+-|=+.+|+. ..+ .|.||+| +++-++++.....|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~-----~I~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDES-----TIP--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcc-----ccc--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 467888886 7899999999654 3466666666677777765 333 2455655 4455555555456999
Q ss_pred EEEeccccC
Q 047497 290 FMKARPYVT 298 (580)
Q Consensus 290 ~i~~~~~~~ 298 (580)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 988765443
No 75
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=85.01 E-value=12 Score=34.31 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred CceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccC-cCCCC--CCCCCCCC--CCCCccceEeeCCCcEE
Q 047497 454 GTKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFG-NFDPN--KDPTKFNL--VDPVERNTVGVPSGGWV 528 (580)
Q Consensus 454 ~~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~--~~~~~~~~--~~p~~rDTv~vp~g~~v 528 (580)
+...+.++.|-.|.+++.|.. .++| .+-++..+.. +..+. .+.+..+. ..+..-..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 456788999999999999964 2443 4555544311 00000 00000000 00000000112345555
Q ss_pred EEEEEecCceeEEEEeechhhhhccceEEEEEecC
Q 047497 529 AIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDG 563 (580)
Q Consensus 529 ~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 563 (580)
.+-+..-.||.+-+=|-+.-|.+.||-..+.|-..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 56666678999999999999999999999988643
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=84.76 E-value=3.1 Score=35.86 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred eeEEEEeC-CCEEEEEEEecCCCC----eEEEEEc-CceeeEEec-------CCCcCCc----eEEeEEEeCCCceEEEE
Q 047497 215 TFKLKVKP-GKTYLLRLINAALND----ELFFSIA-NHTLTVVEA-------DAIYVKP----FETETLLIAPGQTTNVL 277 (580)
Q Consensus 215 ~~~l~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via~-------DG~~v~P----~~~d~l~l~pGeR~dv~ 277 (580)
...|+|++ ++.+.+.|-|.|... .+++-|- .-.+.-|+. |-+|+.+ +...+=.|.+||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 35799998 489999999998543 2333332 223333333 3345533 23466799999999999
Q ss_pred EEcCCCCCCceEEEEec
Q 047497 278 LKTKPHYPSATFFMKAR 294 (580)
Q Consensus 278 v~~~~~~~~g~y~i~~~ 294 (580)
++++.-.+|++|.+.|.
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99875333467999986
No 77
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=84.70 E-value=4.5 Score=35.21 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
.+.++.|++|+|+.... ..|-.+.=+-. +|..-+++....+..... .++-
T Consensus 55 ~v~v~pGDTVtw~~~d~-----~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~--Tfe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTDS-----VGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTH--TFET 104 (128)
T ss_pred EEEECCCCEEEEEECCC-----CCceEEEeCCC-----------------------CcccccccccCCCcceEE--Eecc
Confidence 46888999999986531 35554422211 011122223333344444 4445
Q ss_pred ceeEEEEeechhhhhccceEEEEEec
Q 047497 537 PGVWFMHCHLEVHTSWGLKMAWIVLD 562 (580)
Q Consensus 537 pG~wl~HCHil~H~d~GM~~~~~V~~ 562 (580)
||.+-|.|- .|..+||-+.+.|++
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999995 799999999998853
No 78
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=84.62 E-value=3.7 Score=39.03 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=57.4
Q ss_pred cEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCc-cccc-
Q 047497 63 PRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHL-SWLR- 140 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~~~- 140 (580)
..|.+..|+.|++++++.. .+ ||..++.- |+ +.-.-||..-+..|++ +++|+|...|.. .|..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999853 12 77766532 21 2345689999999986 899999999985 2332
Q ss_pred ccceeeEEEeCCC
Q 047497 141 STLYGPIIILPKR 153 (580)
Q Consensus 141 ~Gl~G~liV~~~~ 153 (580)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 6789999998764
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=79.12 E-value=7.6 Score=38.07 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=57.4
Q ss_pred cEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCc-cccc-
Q 047497 63 PRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHL-SWLR- 140 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~~~- 140 (580)
+.|.+..|.+|++.++-. +. .||..++.. ++ |.-.-||...++.+++ +++|+|.-+|+. .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DV-----iHsF~IP~l-------~~-k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DV-----IHSFWIPQL-------GG-KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hh-----ceeEEecCC-------Cc-eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999988766 22 245555432 11 2335689999999986 999999999985 3444
Q ss_pred ccceeeEEEeCCCC
Q 047497 141 STLYGPIIILPKRG 154 (580)
Q Consensus 141 ~Gl~G~liV~~~~~ 154 (580)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998864
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=69.92 E-value=6.3 Score=41.26 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=50.7
Q ss_pred cEEEEecCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCccc--cc
Q 047497 63 PRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSW--LR 140 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~--~~ 140 (580)
-+..|++||.|++.++|-....-.+ ||.-.+. -|+. ..+.|-++-.|.|.+ +.+|-+||.|--.- ..
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 4778899999999888876443333 4443332 1221 447888889999986 88999999875321 22
Q ss_pred ccceeeEEEe
Q 047497 141 STLYGPIIIL 150 (580)
Q Consensus 141 ~Gl~G~liV~ 150 (580)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 4556666665
No 81
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=67.13 E-value=16 Score=30.00 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=41.8
Q ss_pred EeCCCEEEEEEE--ecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEE-EeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 220 VKPGKTYLLRLI--NAALNDELFFSIANHTLTVVEADAIYVKPFETETL-LIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 220 v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l-~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
-+|||++.+|++ +... ......-....++|..-+|..+. ...+ .......++.-+..+....-|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 479999999999 6662 11101111234666666665331 2222 34678889999999876656999999874
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=66.61 E-value=48 Score=26.67 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=41.4
Q ss_pred CcEEEEe---cCCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEe
Q 047497 62 GPRIVAR---EGDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWH 133 (580)
Q Consensus 62 gP~i~v~---~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH 133 (580)
.|.+.++ ....|+|+|.|....+..+........ .+. -.+..|+||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~--~~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGG--PWTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCC--CEEEEECCCCEEEEEEeec--CCCCcEE
Confidence 4555554 234899999999888877776653222 111 1356789999999999873 3334554
No 83
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=66.13 E-value=21 Score=35.03 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+.+.++.|+.|++.+...+ ..|. |+|-+.+ --+.+-||-.....+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHs-------F~IP~l~---------------------~k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHS-------FWIPQLG---------------------GKIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hcee-------EEecCCC---------------------ceeeecCCceEEEEEec
Confidence 34578899999999998643 4454 5553322 22345577888889999
Q ss_pred cCceeEEEEeechhhhhc-cceEEEEEecC
Q 047497 535 DNPGVWFMHCHLEVHTSW-GLKMAWIVLDG 563 (580)
Q Consensus 535 dnpG~wl~HCHil~H~d~-GM~~~~~V~~~ 563 (580)
+.||.+-.+|+..--... .|-..+.|++.
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 999999999999875544 45556666543
No 84
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=59.67 E-value=30 Score=29.10 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=43.9
Q ss_pred EEEEEecCCCCceEEecCCccCCCCCCC-CCCCccccccCCCCeEEEEEEECCCccceeEeeCcccccccceeeEEEeCC
Q 047497 74 LIKVMNHVQNNISIHWHGIRQLRSGWAD-GPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHLSWLRSTLYGPIIILPK 152 (580)
Q Consensus 74 ~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 152 (580)
.|+++|.|.....|..|=-.-. -| |+ ..+.||+++.++|.. +--|+--|.|+..........-+.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965555544433221 12 22 458999999999985 5668888889876522223555555543
No 85
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.33 E-value=97 Score=24.86 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=39.6
Q ss_pred EEeCCCEE--EEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEE-EeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 219 KVKPGKTY--LLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETL-LIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 219 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l-~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
.+.+|+.+ .+.+.|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+....+ ..|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~-~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPP-SPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-S-S-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeC-CCCeEEEEEEE
Confidence 45567655 577899987664444333 23455433 34445 78999999888887664 22899888763
No 86
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=55.45 E-value=14 Score=31.44 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=38.8
Q ss_pred EEEEEecCCCC---ceEEecCCccCCC---CCCCCCCCccccccCCCCeEEEEEEEC--CCccceeEeeCccccccccee
Q 047497 74 LIKVMNHVQNN---ISIHWHGIRQLRS---GWADGPAYITQCPIQTGQSYVYNFTIV--GQRGTLWWHAHLSWLRSTLYG 145 (580)
Q Consensus 74 ~v~l~N~l~~~---~~iH~HG~~~~~~---~~~DGv~~~tq~~i~PG~~~~Y~f~~~--~~~Gt~wYH~H~~~~~~Gl~G 145 (580)
.|++.|....+ .+=|||=-...+. -...||-| .|..|+||++|+|.=-.+ .+.|+ |.|
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~-------------M~G 98 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT-------------MQG 98 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce-------------EEE
Confidence 37777777654 3568873332221 11345543 567899999999975433 34444 555
Q ss_pred eEEEeCCCC
Q 047497 146 PIIILPKRG 154 (580)
Q Consensus 146 ~liV~~~~~ 154 (580)
-....++++
T Consensus 99 hY~M~~e~G 107 (126)
T COG2967 99 HYEMIDEDG 107 (126)
T ss_pred EEEEecCCC
Confidence 555555554
No 87
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=54.97 E-value=1e+02 Score=29.01 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=54.8
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEec
Q 047497 456 KLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLAD 535 (580)
Q Consensus 456 ~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~ad 535 (580)
+.+.++.|+.+++.+... +..|.|.+-.... .+|. -||....+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d~---~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMDA---IPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eeec---CCCceEEEEEEcC
Confidence 346788999999999864 3566665544321 1333 3788899999999
Q ss_pred CceeEEEEeechhhh-hccceEEEEEecC
Q 047497 536 NPGVWFMHCHLEVHT-SWGLKMAWIVLDG 563 (580)
Q Consensus 536 npG~wl~HCHil~H~-d~GM~~~~~V~~~ 563 (580)
.||.+-.-|.-.--. +..|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999987654 4567777777654
No 88
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=54.89 E-value=99 Score=24.01 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=30.4
Q ss_pred eCCC--EEEEEEEecCCCC--eEEEEEcCceeeEEecCCCcC--CceEEeEEEeCCCceEEEEEEcC--CCCCCceEEEE
Q 047497 221 KPGK--TYLLRLINAALND--ELFFSIANHTLTVVEADAIYV--KPFETETLLIAPGQTTNVLLKTK--PHYPSATFFMK 292 (580)
Q Consensus 221 ~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v--~P~~~d~l~l~pGeR~dv~v~~~--~~~~~g~y~i~ 292 (580)
.+|+ .+.+.+.|.+... ...+++. .=+|-.+ .|..+. .|.||+...+-++.. .....|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 4566 4567788988543 2344443 2233222 233334 789997766655554 33334899987
Q ss_pred ec
Q 047497 293 AR 294 (580)
Q Consensus 293 ~~ 294 (580)
+.
T Consensus 73 ~~ 74 (78)
T PF10633_consen 73 VT 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.26 E-value=62 Score=31.36 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=54.8
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+.+.++.|+.|++.+.+.+ ..|.|.+-.... .+.+-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~----------------------------k~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGV----------------------------KVDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccCc----------------------------eeECCCCcceeEEEEe
Confidence 34678899999999998753 555554433211 1234478888888999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEecC
Q 047497 535 DNPGVWFMHCHLEVHT-SWGLKMAWIVLDG 563 (580)
Q Consensus 535 dnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 563 (580)
+.||.+...|.-+-.. +..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 9999999999987766 4566667776643
No 90
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=51.13 E-value=67 Score=24.34 Aligned_cols=65 Identities=11% Similarity=0.322 Sum_probs=36.4
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEec
Q 047497 216 FKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKAR 294 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 294 (580)
..+++++|+++++.+-+.+. +..++|...+|..+....... -..+..-.+.+.+.++ |+|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 57899999999988877764 223556666664331110000 0012223333445555 99998864
No 91
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.28 E-value=72 Score=30.09 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=44.5
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.++.|+.+||++.-.. -.+.|.+.+.. -.+..-||..-.+-++++++ |.|..+|..+
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~----------------~k~d~~PG~~~~~~~~~~~~---G~y~g~C~e~ 175 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLN----------------LKMDAIPGRINHLFFCPDRH---GVFVGYCSEL 175 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccC----------------ceeecCCCceEEEEEEcCCC---EEEEEEeehh
Confidence 488999999999986554 33444443321 22345589999999998888 9999999987
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 176 CG~ 178 (194)
T MTH00047 176 CGV 178 (194)
T ss_pred hCc
Confidence 654
No 92
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=46.83 E-value=55 Score=31.71 Aligned_cols=63 Identities=8% Similarity=0.116 Sum_probs=44.8
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 216 FKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
-.+.+..|+.+||++.-.... |.|+| |.-.-....-||..-.+-++++++ |.|..+|..
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~~---G~y~g~CaE 197 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIANEP---GVYDGISAN 197 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeCCC---EEEEEEchh
Confidence 357888888888887665522 33333 333334445589999999999988 999999998
Q ss_pred ccCC
Q 047497 296 YVTG 299 (580)
Q Consensus 296 ~~~~ 299 (580)
+++.
T Consensus 198 ~CG~ 201 (226)
T TIGR01433 198 YSGP 201 (226)
T ss_pred hcCc
Confidence 7654
No 93
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.33 E-value=66 Score=31.16 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=45.2
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 216 FKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
..+.+..|+.+||++.+.. -.+.|.+.+. .-.+..-||..-.+-++++++ |.|...|..
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~----------------~~k~d~~Pg~~~~~~~~~~~~---g~y~~~C~e 198 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSL----------------GVKVDAIPGRLNQLSFEPKRP---GVFYGQCSE 198 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceecccc----------------CceeECCCCcceeEEEEeCCC---EEEEEECcc
Confidence 3588999999999998854 3333443322 122445688888899998888 999999987
Q ss_pred ccCC
Q 047497 296 YVTG 299 (580)
Q Consensus 296 ~~~~ 299 (580)
+++.
T Consensus 199 ~CG~ 202 (228)
T MTH00140 199 ICGA 202 (228)
T ss_pred ccCc
Confidence 7643
No 94
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=44.06 E-value=1.6e+02 Score=25.50 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=42.7
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcC-------CceEEeEEEeCCCceEEEEEEcCCC
Q 047497 218 LKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYV-------KPFETETLLIAPGQTTNVLLKTKPH 283 (580)
Q Consensus 218 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~d~l~l~pGeR~dv~v~~~~~ 283 (580)
|++.....|+|++..- ...+|.|+|..+ |..++..- .+....++.|..|++|+|-|...+.
T Consensus 54 ~~~~~~G~y~f~~~~~---d~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSD---DGARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEES---SEEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEec---ccEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 7777777899999833 356788988765 55555432 3556778899999999999887654
No 95
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.35 E-value=19 Score=29.71 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=29.0
Q ss_pred EEEECCCCCCcEEEEecCCEEEEEEEecCCCCceE
Q 047497 53 IISVNGKFPGPRIVAREGDQLLIKVMNHVQNNISI 87 (580)
Q Consensus 53 ~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~i 87 (580)
-+.+||+.--|.=.|+.||.|+|++.|.+-....+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 56789998889999999999999999987544433
No 96
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=40.82 E-value=1.7e+02 Score=30.18 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.4
Q ss_pred ccccCCCCeEEEEEEE
Q 047497 108 QCPIQTGQSYVYNFTI 123 (580)
Q Consensus 108 q~~i~PG~~~~Y~f~~ 123 (580)
+.||+|||+.+.+.++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999987
No 97
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=39.97 E-value=73 Score=30.61 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=44.1
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+||++...... |.|+| |.-.-.+..-||..-.+-++++++ |.|...|..+
T Consensus 131 ~l~iP~g~~v~~~ltS~DVi---------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~~---G~y~g~Cae~ 189 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADTM---------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQV---GTYRGRNANF 189 (217)
T ss_pred cEEEECCCEEEEEEECCchh---------hhhhc---------hhhCceeecCCCceEEEEEEeCCC---EEEEEEehhh
Confidence 57788888888887655522 33333 433334445589999999999988 9999999977
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 190 CG~ 192 (217)
T TIGR01432 190 NGE 192 (217)
T ss_pred cCc
Confidence 554
No 98
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=39.80 E-value=88 Score=23.53 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=29.0
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEE
Q 047497 218 LKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTN 275 (580)
Q Consensus 218 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~d 275 (580)
+++.+|+..+||..... .+.+.+-.++|.. +| ..+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG------DPDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC------CCCCEEECCCCEEE
Confidence 56778888888865443 3667777777754 44 23445566666655
No 99
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.73 E-value=97 Score=30.02 Aligned_cols=63 Identities=6% Similarity=0.067 Sum_probs=44.2
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 216 FKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
-.+.+..|+.+|+++.+.. -.+.|.+.+... .+..-||..-.+.+.++.+ |.|...|..
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~----------------k~daiPG~~~~~~~~~~~~---G~~~g~Cse 198 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGV----------------KVDAVPGRLNQIGFTITRP---GVFYGQCSE 198 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCc----------------ceecCCCceEEEEEEeCCC---EEEEEEChh
Confidence 3588899999999998855 233333332221 2344588888888888888 999999987
Q ss_pred ccCC
Q 047497 296 YVTG 299 (580)
Q Consensus 296 ~~~~ 299 (580)
+++.
T Consensus 199 ~CG~ 202 (228)
T MTH00008 199 ICGA 202 (228)
T ss_pred hcCc
Confidence 6554
No 100
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=39.60 E-value=49 Score=26.92 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=28.5
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeeEEecCCCcC--C--ceEEeEEEeCCCceEEE
Q 047497 225 TYLLRLINAALNDELFFSIANHTLTVVEADAIYV--K--PFETETLLIAPGQTTNV 276 (580)
Q Consensus 225 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v--~--P~~~d~l~l~pGeR~dv 276 (580)
.|++||-|.+.. .+.|-...+.|...||... + -+.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 588999999966 3666677788877777432 1 11113336888886654
No 101
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=38.70 E-value=1.7e+02 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=13.8
Q ss_pred EEEEEecCCC-CeEEEEEcCce
Q 047497 227 LLRLINAALN-DELFFSIANHT 247 (580)
Q Consensus 227 rlRliN~~~~-~~~~~~i~gh~ 247 (580)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5788888765 45666665544
No 102
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=37.20 E-value=2.1e+02 Score=26.03 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=50.3
Q ss_pred eEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEec
Q 047497 456 KLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLAD 535 (580)
Q Consensus 456 ~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~ad 535 (580)
+.+.++.|+.+++.+... +..|.|.+-.... ..|. -||-...+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-------------------------K~Da---vPGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-------------------------KADA---IPGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCc-------------------------eeec---cCCceEEEEEecC
Confidence 346788999999999864 3556555433221 1233 3677778888999
Q ss_pred CceeEEEEeechhhhh-ccceEEEEEec
Q 047497 536 NPGVWFMHCHLEVHTS-WGLKMAWIVLD 562 (580)
Q Consensus 536 npG~wl~HCHil~H~d-~GM~~~~~V~~ 562 (580)
.+|.+...|.-+--.. ..|-..++|.+
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999998765332 34656666554
No 103
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.11 E-value=53 Score=29.50 Aligned_cols=82 Identities=12% Similarity=0.132 Sum_probs=45.2
Q ss_pred HHHHhhccccccceeEEEEEEEEEEeeecCCceeEEEEECCCC-CCcEEEEecCCEEEEEEEecCCCCceEEecCCccCC
Q 047497 18 FVTLCLLAEPALGVTRHYKFDIKLQNVTRLCNTKSIISVNGKF-PGPRIVAREGDQLLIKVMNHVQNNISIHWHGIRQLR 96 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~-pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~ 96 (580)
+.++..+...++.....|-++.++...... ...+.+.+.|.+ +| .|+-..|..++.+++-. .....++.+|.. +
T Consensus 19 ~~~~~~L~~~a~~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~g-Si~~~~~~~~~F~ltD~-~~~i~V~Y~G~l--P 93 (148)
T PRK13254 19 LGLAVALVLYALRQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKG-SVQRGDGLTVRFVVTDG-NATVPVVYTGIL--P 93 (148)
T ss_pred HHHHHHHHHHHHHhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecC-cEEeCCCCEEEEEEEeC-CeEEEEEECCCC--C
Confidence 333334444555566667777766433322 223334444544 34 33333777788888765 455678888874 3
Q ss_pred CCCCCCCC
Q 047497 97 SGWADGPA 104 (580)
Q Consensus 97 ~~~~DGv~ 104 (580)
..+.+|..
T Consensus 94 d~F~eg~~ 101 (148)
T PRK13254 94 DLFREGQG 101 (148)
T ss_pred ccccCCCE
Confidence 34466653
No 104
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=36.67 E-value=1.5e+02 Score=31.13 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=43.3
Q ss_pred ceeEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEe
Q 047497 214 DTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKA 293 (580)
Q Consensus 214 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~ 293 (580)
....+++++|+ ++|.+.|.+... +.|+++ +|..+. -..=.|.||.+..+.+.+ .+ |+|.+.|
T Consensus 42 ~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L-~p---GtY~~~C 103 (375)
T PRK10378 42 EPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANL-QP---GEYDMTC 103 (375)
T ss_pred ccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEec-CC---ceEEeec
Confidence 34679999996 999999998544 234444 222110 012279999888887777 34 9999999
Q ss_pred cc
Q 047497 294 RP 295 (580)
Q Consensus 294 ~~ 295 (580)
..
T Consensus 104 ~~ 105 (375)
T PRK10378 104 GL 105 (375)
T ss_pred Cc
Confidence 53
No 105
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.26 E-value=1.2e+02 Score=29.27 Aligned_cols=62 Identities=5% Similarity=0.066 Sum_probs=42.5
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+||++.-... .+.|.+... .-.+..-||..-.+-+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~l----------------g~k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDV--LHSWAVPSL----------------GLKTDAIPGRLNQTTLMSTRP---GLYYGQCSEI 199 (227)
T ss_pred eEEecCCCEEEEEEEECcc--ccccccccc----------------ccceecCCCceEEEEEecCCc---EEEEEECccc
Confidence 5788889998888866552 233333322 122344588888888888888 9999999876
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 200 CG~ 202 (227)
T MTH00098 200 CGS 202 (227)
T ss_pred cCc
Confidence 543
No 106
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=35.05 E-value=1.7e+02 Score=25.24 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.3
Q ss_pred cccCCCCeEEEEEEE
Q 047497 109 CPIQTGQSYVYNFTI 123 (580)
Q Consensus 109 ~~i~PG~~~~Y~f~~ 123 (580)
.-|+|+++.+..|++
T Consensus 87 Vtl~~~~sk~V~~~i 101 (121)
T PF06030_consen 87 VTLPPNESKTVTFTI 101 (121)
T ss_pred EEECCCCEEEEEEEE
Confidence 447999998888887
No 107
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.65 E-value=1.1e+02 Score=29.72 Aligned_cols=62 Identities=6% Similarity=0.073 Sum_probs=43.0
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+|+++.-.. -.+.|.+.+.. -.+..-||.+-.+.+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~----------------~k~da~PG~~~~~~~~~~~~---G~~~g~C~e~ 199 (230)
T MTH00129 141 RMVVPVESPIRVLVSAED--VLHSWAVPALG----------------VKMDAVPGRLNQTAFIASRP---GVFYGQCSEI 199 (230)
T ss_pred eEEEecCcEEEEEEEeCc--cccceeccccC----------------CccccCCCceEEEEEEeCCc---eEEEEEChhh
Confidence 578889999888886554 23333333221 12345589998898888888 9999999876
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 200 CG~ 202 (230)
T MTH00129 200 CGA 202 (230)
T ss_pred ccc
Confidence 554
No 108
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=33.73 E-value=90 Score=27.21 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=32.4
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeeEEecCCCcC----CceEEeEEEeCCCceEEE
Q 047497 225 TYLLRLINAALNDELFFSIANHTLTVVEADAIYV----KPFETETLLIAPGQTTNV 276 (580)
Q Consensus 225 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v----~P~~~d~l~l~pGeR~dv 276 (580)
.|++||.|.+.. .+.|-...+.|...||... +.+.-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 578999998743 3677778888888887632 112223346788886654
No 109
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=33.48 E-value=1.9e+02 Score=26.31 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=41.6
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+||++.-+. -.+.|.+.+..+ .+..-||..-.+.+.+..+ |.|...|..+
T Consensus 74 ~LvLP~g~~Vr~~lTS~D--VIHSF~VP~lgv----------------K~DavPGr~n~l~~~~~~~---G~y~gqCsEl 132 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD--VIHSWSVPSLGI----------------KADAIPGRLHKINTFILRE---GVFYGQCSEM 132 (162)
T ss_pred CEEEeCCCEEEEEEEeCc--cceeeeccccCc----------------eeeccCCceEEEEEecCCC---eEEEEEcchh
Confidence 477888999888876555 334444443322 2234467777777777777 9999999977
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 133 CG~ 135 (162)
T PTZ00047 133 CGT 135 (162)
T ss_pred cCc
Confidence 654
No 110
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.22 E-value=1.2e+02 Score=27.11 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=26.0
Q ss_pred EeCCCceEEEEE-EcCCCCCCceEEEEeccccCCC
Q 047497 267 LIAPGQTTNVLL-KTKPHYPSATFFMKARPYVTGQ 300 (580)
Q Consensus 267 ~l~pGeR~dv~v-~~~~~~~~g~y~i~~~~~~~~~ 300 (580)
.+.||+.+.|.+ ...+|..+|.|.+.+..+..+.
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 468899999999 4456666799999988765543
No 111
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=32.18 E-value=2.9e+02 Score=23.71 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=38.3
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcC-CceEEeEEEeCCCceEEEEEEcCCC
Q 047497 218 LKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYV-KPFETETLLIAPGQTTNVLLKTKPH 283 (580)
Q Consensus 218 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-~P~~~d~l~l~pGeR~dv~v~~~~~ 283 (580)
|++.....|+|.+... ...+|.|+|.. ||..++..- .+.....+.|..|++|.|.|...+.
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 5665555789988433 34568888753 444443322 2334456888888888888877654
No 112
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=32.15 E-value=98 Score=31.56 Aligned_cols=62 Identities=10% Similarity=0.159 Sum_probs=46.2
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+||++...... |.|+| |.-.-.+..-||..-.+-+.++++ |.|...|..+
T Consensus 152 eL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~~---G~Y~G~CaEy 210 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANEP---GTYDGISASY 210 (315)
T ss_pred cEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCCC---EEEEEEChhh
Confidence 47889999999999876643 23333 444445556688888888999988 9999999987
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 211 CG~ 213 (315)
T PRK10525 211 SGP 213 (315)
T ss_pred cCc
Confidence 654
No 113
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=31.54 E-value=2.3e+02 Score=24.59 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=41.7
Q ss_pred EEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCC
Q 047497 227 LLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPH 283 (580)
Q Consensus 227 rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~ 283 (580)
-|-|-|.+....+.+ .+..-...||..++.+....+.|.|=+..+++|+-++.
T Consensus 28 tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~ 80 (125)
T PF11322_consen 28 TLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDT 80 (125)
T ss_pred EEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccC
Confidence 355667776665544 35566788999999998899999999999999988765
No 114
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=31.50 E-value=69 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=12.1
Q ss_pred CCCCCCccccccCCCCeEEEE
Q 047497 100 ADGPAYITQCPIQTGQSYVYN 120 (580)
Q Consensus 100 ~DGv~~~tq~~i~PG~~~~Y~ 120 (580)
.+||-| .|.-|.||++|+|.
T Consensus 66 G~GVVG-~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVG-EQPVLAPGESFEYT 85 (127)
T ss_pred CCceec-CCceECCCCCeEEe
Confidence 344433 23456999977765
No 115
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=31.29 E-value=3.8e+02 Score=23.85 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=43.7
Q ss_pred CEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceE-------EeEEEeCCCceE-EEEEEcCCCCCCceEEEEec
Q 047497 224 KTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFE-------TETLLIAPGQTT-NVLLKTKPHYPSATFFMKAR 294 (580)
Q Consensus 224 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~-------~d~l~l~pGeR~-dv~v~~~~~~~~g~y~i~~~ 294 (580)
.+|-|.+-|.|... +.++...++|+ +||+.+.|.. .+.+.|.|||-- ++.+.-... |.-.+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS---Gyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS---GYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC---cceEEEEE
Confidence 47889999999543 55677888887 7998886543 256779999987 555444333 55455543
No 116
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.95 E-value=54 Score=29.29 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.0
Q ss_pred eeCCCcEEEEEEEe-cCc---eeEEEEeech
Q 047497 521 GVPSGGWVAIRFLA-DNP---GVWFMHCHLE 547 (580)
Q Consensus 521 ~vp~g~~v~irf~a-dnp---G~wl~HCHil 547 (580)
.|+||..+.|.++. .|| |.|+|+|-..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 56899999999965 576 9999999654
No 117
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.80 E-value=1.9e+02 Score=24.84 Aligned_cols=67 Identities=27% Similarity=0.427 Sum_probs=37.8
Q ss_pred EECCCCCCcEEEEecCCEEEEEEEecCC---CCceEEec----CCccC-CCCCCCCCCCccccccCCCCeEEEEEEE
Q 047497 55 SVNGKFPGPRIVAREGDQLLIKVMNHVQ---NNISIHWH----GIRQL-RSGWADGPAYITQCPIQTGQSYVYNFTI 123 (580)
Q Consensus 55 ~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~---~~~~iH~H----G~~~~-~~~~~DGv~~~tq~~i~PG~~~~Y~f~~ 123 (580)
.++|- ++..=.+++|..+.+.+.=... ...+...| |+..+ +.+..||=-+ ..|||.+|+.++|.+.+
T Consensus 13 ~V~~C-~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 13 EVDGC-SGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred EeCCC-CCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 34443 2445567778877766652222 22233333 44433 2222555222 36999999999999987
No 118
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.34 E-value=1.8e+02 Score=28.21 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+|+++.-.... |.|.| |.-.-.+..-||..-.+-+.++.+ |.|..+|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~i---------P~lg~k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDVL---------HSWTV---------PALGVKMDAVPGRLNQATFIISRP---GLYYGQCSEI 199 (230)
T ss_pred eEEEecCCEEEEEEEcCccc---------ccccc---------cccCceeEecCCceEEEEEEeCCc---EEEEEEchhh
Q ss_pred cC
Q 047497 297 VT 298 (580)
Q Consensus 297 ~~ 298 (580)
++
T Consensus 200 CG 201 (230)
T MTH00185 200 CG 201 (230)
T ss_pred cC
No 119
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=29.92 E-value=1.7e+02 Score=28.23 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=53.1
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
-+.++.|+.|++.+.+.+ -.|. |+|-+.+ ..+|.+ ||-...+.|++|.
T Consensus 140 el~lP~g~pV~~~ltS~D----ViHS-------F~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS----VMNS-------FFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEECc----hhhh-------hhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 468899999999998743 4454 5554332 124554 6888889999999
Q ss_pred ceeEEEEeechhhh-hccceEEEEEecC
Q 047497 537 PGVWFMHCHLEVHT-SWGLKMAWIVLDG 563 (580)
Q Consensus 537 pG~wl~HCHil~H~-d~GM~~~~~V~~~ 563 (580)
||.|.-.|--.-=. +..|...++|.+.
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999765433 3567777777653
No 120
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=29.36 E-value=2.5e+02 Score=26.96 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=62.4
Q ss_pred eecCCceeEEEEECCCCCCcEEEEecCCEEEEEEEecCCCC-----ceEEecCCccCCCCCCCCCCCccccccCCCCeEE
Q 047497 44 VTRLCNTKSIISVNGKFPGPRIVAREGDQLLIKVMNHVQNN-----ISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYV 118 (580)
Q Consensus 44 ~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~-----~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~ 118 (580)
++++|..--.+++.|.+-.-.|.|..|..+++++.=+.+.+ .+--+|+.. .++-++...
T Consensus 78 ~a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ss 141 (272)
T COG4633 78 FAPNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSS 141 (272)
T ss_pred cccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeE
Confidence 34444444446666666557999999999999999887543 223333322 245578888
Q ss_pred EEEEECCCccceeEeeCcccccccceeeEEEeCCCCC
Q 047497 119 YNFTIVGQRGTLWWHAHLSWLRSTLYGPIIILPKRGI 155 (580)
Q Consensus 119 Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~ 155 (580)
.+|+ +.++|+|-+-|.. .=|.|.++|+...+.
T Consensus 142 Ie~T-~~s~ge~af~cgm----nm~~G~~~vet~~~~ 173 (272)
T COG4633 142 IEFT-PISKGEYAFLCGM----NMFRGNIQVETLTGK 173 (272)
T ss_pred EEec-cccccchhhhcch----hhccCeeEEEecCCc
Confidence 8998 6899999887743 235789999987754
No 121
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=28.97 E-value=2.1e+02 Score=24.61 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=34.1
Q ss_pred cEEEEecCCEEEEEEEecCCC-----CceEEec--CCccCCC-CCCCCCCCc-cccccCCCCeEEEEEEEC
Q 047497 63 PRIVAREGDQLLIKVMNHVQN-----NISIHWH--GIRQLRS-GWADGPAYI-TQCPIQTGQSYVYNFTIV 124 (580)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~-----~~~iH~H--G~~~~~~-~~~DGv~~~-tq~~i~PG~~~~Y~f~~~ 124 (580)
..=.+.+|+.+.+.+.=...+ .+.+|+. |+..+-. ...|+=... ..|||.+|+.++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 444566777766665532221 2224433 5444321 113441111 459999999999999863
No 122
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=28.82 E-value=48 Score=34.14 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCCCCccccccCCCCeEEEEEEEC-CCccceeEeeCcccccc-cceee---EEEeCC
Q 047497 100 ADGPAYITQCPIQTGQSYVYNFTIV-GQRGTLWWHAHLSWLRS-TLYGP---IIILPK 152 (580)
Q Consensus 100 ~DGv~~~tq~~i~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~~~~-Gl~G~---liV~~~ 152 (580)
+.|.|-.....+..|+++.|+..+. ..+|+|--|+-.+-... .+.|+ +.|++.
T Consensus 72 ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g~ 129 (381)
T PF04744_consen 72 INGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEGS 129 (381)
T ss_dssp ETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES-
T ss_pred ecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEecc
Confidence 4454433346789999988888764 67999644443333333 35554 556644
No 123
>PRK13202 ureB urease subunit beta; Reviewed
Probab=28.43 E-value=1.5e+02 Score=24.63 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=40.3
Q ss_pred EEEEecC--CEEEEEEEecCCCCce--EEecCCccCCCCCCC---------CCCCccccccCCCCeEEEEEE
Q 047497 64 RIVAREG--DQLLIKVMNHVQNNIS--IHWHGIRQLRSGWAD---------GPAYITQCPIQTGQSYVYNFT 122 (580)
Q Consensus 64 ~i~v~~G--d~v~v~l~N~l~~~~~--iH~HG~~~~~~~~~D---------Gv~~~tq~~i~PG~~~~Y~f~ 122 (580)
.|++++| +++.|+|+|.-+.|.- -|+|=.+....--.| ..|.-|-.-..||++.+-+.-
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 5899999 6999999999988754 688877665432222 133333344678888877774
No 124
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.55 E-value=2.9e+02 Score=26.79 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=53.2
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+.+.++.|+.+++.+...+ .. |.|+|-+.|. ..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~da---~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMDA---VPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------cccc---CCCceEEEEEEe
Confidence 34578899999999998643 33 3576654431 1333 378888888999
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEec
Q 047497 535 DNPGVWFMHCHLEVHT-SWGLKMAWIVLD 562 (580)
Q Consensus 535 dnpG~wl~HCHil~H~-d~GM~~~~~V~~ 562 (580)
+.||.+...|.-+--. +..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 9999999999885544 355666666654
No 125
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.99 E-value=3.1e+02 Score=26.57 Aligned_cols=76 Identities=16% Similarity=0.320 Sum_probs=52.8
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+.+.++.|+.|++.+.+.+ ..|.|.+-+... ..| .-||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~vP~~~~-------------------------k~d---aiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD----VIHSWTVPSLGV-------------------------KVD---AVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeCC----ccccccccccCc-------------------------cee---cCCCceEEEEEEe
Confidence 34578899999999998753 455554443322 122 3377888888899
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEec
Q 047497 535 DNPGVWFMHCHLEVHT-SWGLKMAWIVLD 562 (580)
Q Consensus 535 dnpG~wl~HCHil~H~-d~GM~~~~~V~~ 562 (580)
+.||.+..-|.-+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999999876655 345666666654
No 126
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.87 E-value=2.7e+02 Score=26.89 Aligned_cols=62 Identities=6% Similarity=0.095 Sum_probs=42.6
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+|+++.-+.. .+.|.+.. -.-.+..-||..-.+.+.++++ |.|...|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~vP~----------------lg~K~DavPG~~n~~~~~~~~~---G~y~g~CsE~ 199 (227)
T MTH00117 141 RMVIPMESPIRILITAEDV--LHSWAVPS----------------LGVKTDAVPGRLNQTSFITTRP---GVFYGQCSEI 199 (227)
T ss_pred eEEEecCceEEEEEEecch--hhcccccc----------------cCceeEecCCceEEEEEEEccc---ceEEEEeccc
Confidence 5788889998888865553 23333322 2222344578888888888888 9999999877
Q ss_pred cCC
Q 047497 297 VTG 299 (580)
Q Consensus 297 ~~~ 299 (580)
++.
T Consensus 200 CG~ 202 (227)
T MTH00117 200 CGA 202 (227)
T ss_pred ccc
Confidence 654
No 127
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.80 E-value=59 Score=25.90 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.6
Q ss_pred ceeEEEEECCCCCCcEEEEecCCEEEEE
Q 047497 49 NTKSIISVNGKFPGPRIVAREGDQLLIK 76 (580)
Q Consensus 49 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~ 76 (580)
.+...+.+||+.-++.-+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3577899999999999999999998873
No 128
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=24.16 E-value=1.9e+02 Score=24.44 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCC-eEEEEEcCc-eeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCC
Q 047497 225 TYLLRLINAALND-ELFFSIANH-TLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPH 283 (580)
Q Consensus 225 ~~rlRliN~~~~~-~~~~~i~gh-~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~ 283 (580)
.|+++|+|.+... .+.+.++|. .+++. .....+.|.+|+..++-|....+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEEEC
Confidence 7899999999665 466666653 22221 13467889999988876655443
No 129
>COG3241 Azurin [Energy production and conversion]
Probab=23.79 E-value=1.1e+02 Score=26.33 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCCcCCc----eEEeEEEeCCCceEEEEEEcCCCCCCceEEEEec
Q 047497 254 DAIYVKP----FETETLLIAPGQTTNVLLKTKPHYPSATFFMKAR 294 (580)
Q Consensus 254 DG~~v~P----~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~ 294 (580)
|-.|++| +...+-+|+.|||-++-++..+-.+|-.|.+.|.
T Consensus 91 d~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCt 135 (151)
T COG3241 91 DTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCT 135 (151)
T ss_pred ccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEe
Confidence 3355654 3457889999999999998877655558999886
No 130
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.32 E-value=2.5e+02 Score=27.31 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=43.7
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 216 FKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
-.+.+..|+.+|+++..+. -.+.|.+.+.. -.+..-||..-.+.+.++.+ |.|...|..
T Consensus 144 n~lvlP~~~~v~~~itS~D--ViHsf~vp~lg----------------~k~daiPG~~~~~~~~~~~~---G~y~g~Cse 202 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VLHSFAVPSLS----------------VKIDAVPGRLNQTSFFIKRP---GVFYGQCSE 202 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hhccccccccC----------------ceeEccCCceEeEEEEeCCC---EEEEEEChh
Confidence 3588899999999998764 23333333221 12344578888888888888 999999987
Q ss_pred ccCC
Q 047497 296 YVTG 299 (580)
Q Consensus 296 ~~~~ 299 (580)
+++.
T Consensus 203 ~CG~ 206 (234)
T MTH00051 203 ICGA 206 (234)
T ss_pred hcCc
Confidence 6554
No 131
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.27 E-value=99 Score=21.79 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=27.2
Q ss_pred eeCCCcEEEEEEEecCceeEEEEeechhhhhc
Q 047497 521 GVPSGGWVAIRFLADNPGVWFMHCHLEVHTSW 552 (580)
Q Consensus 521 ~vp~g~~v~irf~adnpG~wl~HCHil~H~d~ 552 (580)
..+.|....++++...-..+=+||..+-|.+.
T Consensus 14 ~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 14 KFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred EeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34578888899999999999999999999764
No 132
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.05 E-value=3e+02 Score=26.64 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=43.5
Q ss_pred eEEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEecc
Q 047497 216 FKLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARP 295 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~ 295 (580)
..+.+..|+.+|+++.-+. -.+.|.+... .-.+..-||..-.+-++++++ |.|..+|..
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vp~l----------------~~k~davPG~~~~~~~~~~~~---G~y~g~Cse 198 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VIHSWTVPSL----------------GVKVDAVPGRLNQLNFLINRP---GLFFGQCSE 198 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hhhheecccc----------------CCeeecCCCceEEEEEEEcCc---eEEEEEeec
Confidence 3588899999998886554 3334444322 112334478888888888888 999999997
Q ss_pred ccCC
Q 047497 296 YVTG 299 (580)
Q Consensus 296 ~~~~ 299 (580)
+++.
T Consensus 199 ~CG~ 202 (227)
T MTH00154 199 ICGA 202 (227)
T ss_pred hhCc
Confidence 7654
No 133
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.62 E-value=2.8e+02 Score=26.85 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceEEeEEEeCCCceEEEEEEcCCCCCCceEEEEeccc
Q 047497 217 KLKVKPGKTYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFETETLLIAPGQTTNVLLKTKPHYPSATFFMKARPY 296 (580)
Q Consensus 217 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~~~~ 296 (580)
.+.+..|+.+||++.-.... |.|.| |.-.-.+..-||..-.+.+.++++ |.|...|..+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~k~da~PG~~n~~~~~~~~~---G~~~g~C~e~ 199 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDVL---------HSWAV---------PSLGIKTDAIPGRLNQTSFIASRP---GVYYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEecccc---------ccccc---------cccCceEEccCCcceeEEEEeCCc---EEEEEEChhh
Q ss_pred cC
Q 047497 297 VT 298 (580)
Q Consensus 297 ~~ 298 (580)
++
T Consensus 200 CG 201 (228)
T MTH00076 200 CG 201 (228)
T ss_pred cC
No 134
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=22.09 E-value=3.8e+02 Score=30.67 Aligned_cols=67 Identities=10% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCcEEEEec---CCEEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEECCCccceeEeeCc
Q 047497 61 PGPRIVARE---GDQLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTIVGQRGTLWWHAHL 136 (580)
Q Consensus 61 pgP~i~v~~---Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~ 136 (580)
+.|.++++. ...|+|+|.|.-....++|..-.... ++.| .+.-|++|++.+-.|.+ ...+ -||---+
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y~-----~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLtV 661 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAYG-----GAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFTV 661 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCCC-----CCCC--EEEEECCCCEEEEEEec-cCCC-CceEEEE
Confidence 446666654 44699999999988888877632211 1112 13568999999999986 3233 6775443
No 135
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.91 E-value=3.7e+02 Score=26.21 Aligned_cols=76 Identities=16% Similarity=0.344 Sum_probs=52.8
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEe
Q 047497 455 TKLVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLA 534 (580)
Q Consensus 455 ~~~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~a 534 (580)
.+.+.++.|+.|++.+... +..|.|.+-.... .+|.+ ||....+.|.+
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCc-------------------------eeecC---CCcceeEEEEc
Confidence 3457899999999999864 3556555443221 23433 67777788899
Q ss_pred cCceeEEEEeechhhh-hccceEEEEEec
Q 047497 535 DNPGVWFMHCHLEVHT-SWGLKMAWIVLD 562 (580)
Q Consensus 535 dnpG~wl~HCHil~H~-d~GM~~~~~V~~ 562 (580)
+.||.+.-.|.-+-.. +.-|-..++|.+
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVS 226 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999999887655 345666666654
No 136
>PRK07440 hypothetical protein; Provisional
Probab=21.36 E-value=82 Score=24.19 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.3
Q ss_pred eEEEEECCCCCC----cEEEEecCCEEEE
Q 047497 51 KSIISVNGKFPG----PRIVAREGDQLLI 75 (580)
Q Consensus 51 ~~~~~~Ng~~pg----P~i~v~~Gd~v~v 75 (580)
.-+..+||.+-. +...+++||+|+|
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEI 63 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEE
Confidence 446788998877 8899999999987
No 137
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=21.33 E-value=4.4e+02 Score=21.95 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=35.1
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeeEEecCCCcCCceE--------EeEEEeCCCceEEEEEEcCCCCCCceEEEEe
Q 047497 225 TYLLRLINAALNDELFFSIANHTLTVVEADAIYVKPFE--------TETLLIAPGQTTNVLLKTKPHYPSATFFMKA 293 (580)
Q Consensus 225 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~--------~d~l~l~pGeR~dv~v~~~~~~~~g~y~i~~ 293 (580)
.+.+++.|.+... +.+ ....|.++..||...++.. ...-.|.||+..+..+.++-+.....|.|..
T Consensus 39 ~v~v~v~N~~~~~-~~~--~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 39 VVDVTVKNNGDEP-LDF--SPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEY 112 (123)
T ss_dssp EEEEEEEE-SSS--EEE--EGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE
T ss_pred EEEEEEEECCCCc-EEe--cccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEE
Confidence 3468899987544 333 3448888888888765432 2356899999998877776554223366655
No 138
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=20.97 E-value=5e+02 Score=22.91 Aligned_cols=55 Identities=18% Similarity=0.453 Sum_probs=35.5
Q ss_pred CcEEEEecCCEEEEEEEecC-CCCceEE-ecCCccCCCCCCCCCCCcccccc-CCCCeEEEEEEE
Q 047497 62 GPRIVAREGDQLLIKVMNHV-QNNISIH-WHGIRQLRSGWADGPAYITQCPI-QTGQSYVYNFTI 123 (580)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l-~~~~~iH-~HG~~~~~~~~~DGv~~~tq~~i-~PG~~~~Y~f~~ 123 (580)
|-+|...+.+. |.+.|.| +..++|| |.-...-. +|.. +.+.|+ ..|+++...+++
T Consensus 16 Gs~i~f~~~~~--V~feN~lMpsG~~I~~W~S~~nyq---~~r~--~P~LPlLk~g~~Y~i~~n~ 73 (135)
T TIGR03711 16 GTTVKFLSDNE--VYFENPLMPSGETIHTWSSLTNYQ---AART--VPSLPLLKRGQTYKLSLNA 73 (135)
T ss_pred ccEEEEccCCc--EEEeccCCCCCCEEEEEEeeeccc---ccCC--CCCCcEEcCCCEEEEEEee
Confidence 77888877665 8899998 7788887 44443221 2221 134554 678877777776
No 139
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=20.96 E-value=3.6e+02 Score=24.48 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=36.4
Q ss_pred cEEEEe--cCC-EEEEEEEecCCCCceEEecCCccCCCCCCCCCCCccccccCCCCeEEEEEEE
Q 047497 63 PRIVAR--EGD-QLLIKVMNHVQNNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNFTI 123 (580)
Q Consensus 63 P~i~v~--~Gd-~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~f~~ 123 (580)
|+|++. .|. .|+|.+.-..+.+.-.|-|.|-...- .||+-.+...++.|-..+++.|..
T Consensus 41 Ptv~i~ny~G~a~I~vslvT~d~p~~~pHpH~LVgK~c--~~g~c~~~~~~~~pe~~~~~~F~n 102 (159)
T cd07884 41 PTVKLCNYRGQAVIRCSLYQADDNRRKPHVHKLVGKQG--DDDVCDPHDIEVSPEGDYVAMFQN 102 (159)
T ss_pred CeEEEecCcCCEEEEEEEEECCCCCCCCCCcccccccc--cCCCceeeccccCCCCccEEEeCC
Confidence 666665 443 45555555554447889999987765 567743333334455567777763
No 140
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.60 E-value=1.5e+02 Score=26.80 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=43.6
Q ss_pred HhhccccccceeEEEEEEEEEEeeecCCceeEEEEECCC-CCCcEEEEecCC--EEEEEEEecCCCCceEEecCCccCCC
Q 047497 21 LCLLAEPALGVTRHYKFDIKLQNVTRLCNTKSIISVNGK-FPGPRIVAREGD--QLLIKVMNHVQNNISIHWHGIRQLRS 97 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~-~pgP~i~v~~Gd--~v~v~l~N~l~~~~~iH~HG~~~~~~ 97 (580)
..++...++.....|-++.++...... ...+.+-+-|. .+|-..| .+| .|+.+++ +......++..|+- +.
T Consensus 22 a~~Lv~~al~~n~~yF~tpsEv~~~~~-~~~~~~RlGG~V~~GSv~r--~~~~~~v~F~vt-D~~~~v~V~Y~Gil--PD 95 (155)
T PRK13159 22 AVTLIVLALQRNMSYLFTPSQVRAGAA-AGYQQFRLGGMVKAGSIQR--AADSLKVSFTVI-DKNAATQVEYTGIL--PD 95 (155)
T ss_pred HHHHHHHHhhhCceEEECHHHHhcCCc-ccCCeEEEccEEecCcEEE--cCCCcEEEEEEE-cCCcEEEEEEccCC--Cc
Confidence 333444455666678888877543322 12255556665 4566655 455 5666665 33456678888863 33
Q ss_pred CCCCCCC
Q 047497 98 GWADGPA 104 (580)
Q Consensus 98 ~~~DGv~ 104 (580)
-+.+|..
T Consensus 96 lFrEGqg 102 (155)
T PRK13159 96 LFRDNQS 102 (155)
T ss_pred cccCCCe
Confidence 3455553
No 141
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=20.60 E-value=1e+03 Score=29.16 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred cCCCCeEEEEEEECCCccceeEeeCcccccccceeeEEEeCCCCC-------CCCCCCCCCceeeeeecccc
Q 047497 111 IQTGQSYVYNFTIVGQRGTLWWHAHLSWLRSTLYGPIIILPKRGI-------PYPFTKPYKEVPIIFGEWFK 175 (580)
Q Consensus 111 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~-------~~~~~~~d~e~~l~~~d~~~ 175 (580)
..-+..++.+|+ +..+|.|=--+ ..+......|...|++++.. ..++.....+..+...+||.
T Consensus 1083 ~~~~~~~~l~~t-p~~aGi~~vv~-~~~~~~v~~GS~~i~~Pd~~i~v~~Pa~~D~T~aGtd~~I~~d~yY~ 1152 (1289)
T PF06016_consen 1083 DPANNEWTLTWT-PSTAGILDVVV-DDGPVPVPLGSFTIEPPDPTITVTWPANLDYTDAGTDVNITCDPYYR 1152 (1289)
T ss_dssp ETTTTEEEEEEE--SS-CEEEEEE-CTTTCCEEEEEEEEB-----EEEE--TT--SSTT-EEEEEEE-TTSS
T ss_pred eccCceEEEEEc-cCCCceEEEEe-ccCCcccccceeEeeCCCCceEEecccceeeeccCceeeEEecccee
Confidence 466788999998 48999863311 11122345789999987642 12222233455555555553
No 142
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=20.54 E-value=3.3e+02 Score=26.11 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=52.3
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCccccCCcEEEEEeccCcCCCCCCCCCCCCCCCCccceEeeCCCcEEEEEEEecC
Q 047497 457 LVVLPFNSSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPTKFNLVDPVERNTVGVPSGGWVAIRFLADN 536 (580)
Q Consensus 457 ~~~v~~g~~v~~vi~n~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~g~~v~irf~adn 536 (580)
-+.++.|+.|++.+.+.+ ..| .|+|=..+ ..+|.+ ||-...+.|.++.
T Consensus 131 ~l~iP~g~~v~~~ltS~D----ViH-------sf~vP~l~------------------~k~dai---PG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD----TMT-------SFWIPQLG------------------GQKYAM---TGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEECCc----hhh-------hhhchhhC------------------ceeecC---CCceEEEEEEeCC
Confidence 467889999999998642 344 45553322 134555 7888899999999
Q ss_pred ceeEEEEeechhhh-hccceEEEEEecC
Q 047497 537 PGVWFMHCHLEVHT-SWGLKMAWIVLDG 563 (580)
Q Consensus 537 pG~wl~HCHil~H~-d~GM~~~~~V~~~ 563 (580)
||.|--.|=-.-=. +.-|...++|.+.
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 99999999654433 3456677776653
No 143
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=20.26 E-value=1.7e+02 Score=19.68 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=14.6
Q ss_pred eEEEEeCCCEEEEEEEecC
Q 047497 216 FKLKVKPGKTYLLRLINAA 234 (580)
Q Consensus 216 ~~l~v~~G~~~rlRliN~~ 234 (580)
...-...|+.||||+..++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 4455677999999997765
No 144
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.20 E-value=57 Score=23.93 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEECCCCC-CcEEEEecCCEEEE
Q 047497 53 IISVNGKFP-GPRIVAREGDQLLI 75 (580)
Q Consensus 53 ~~~~Ng~~p-gP~i~v~~Gd~v~v 75 (580)
-+.+||+.- -|..+++.||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 466799875 68899999999876
Done!