Query 047498
Match_columns 566
No_of_seqs 135 out of 187
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 99.9 5.7E-23 1.2E-27 223.6 10.9 177 67-256 260-505 (697)
2 PLN03218 maturation of RBCL 1; 99.9 1.9E-22 4.1E-27 232.1 12.1 138 70-209 441-603 (1060)
3 PLN03218 maturation of RBCL 1; 99.9 4.2E-22 9.1E-27 229.3 11.7 138 70-209 583-743 (1060)
4 PLN03077 Protein ECB2; Provisi 99.8 8.9E-21 1.9E-25 210.7 10.6 136 68-209 224-413 (857)
5 PLN03081 pentatricopeptide (PP 99.8 8.1E-20 1.7E-24 199.1 13.6 129 70-199 91-234 (697)
6 PLN03077 Protein ECB2; Provisi 99.8 1.3E-19 2.8E-24 201.5 11.5 127 67-199 122-298 (857)
7 PF13041 PPR_2: PPR repeat fam 99.6 2.2E-16 4.7E-21 119.1 6.0 50 100-165 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 6.8E-16 1.5E-20 116.3 3.1 48 151-199 1-48 (50)
9 PF12854 PPR_1: PPR repeat 99.2 1.6E-11 3.5E-16 87.9 3.8 31 150-180 4-34 (34)
10 PF12854 PPR_1: PPR repeat 99.1 9.8E-11 2.1E-15 83.9 3.7 33 97-129 2-34 (34)
11 TIGR00756 PPR pentatricopeptid 98.7 1.3E-08 2.8E-13 68.9 4.5 34 154-187 1-34 (35)
12 PRK11788 tetratricopeptide rep 98.7 7.8E-08 1.7E-12 96.0 9.6 134 72-227 220-365 (389)
13 TIGR00756 PPR pentatricopeptid 98.7 3.2E-08 7E-13 66.9 4.5 34 103-136 1-34 (35)
14 PRK11788 tetratricopeptide rep 98.6 2E-07 4.3E-12 93.1 10.4 97 70-187 253-352 (389)
15 PF01535 PPR: PPR repeat; Int 98.5 8.7E-08 1.9E-12 64.2 3.5 31 154-184 1-31 (31)
16 PF13812 PPR_3: Pentatricopept 98.5 1.2E-07 2.6E-12 65.0 4.2 34 153-186 1-34 (34)
17 KOG4422 Uncharacterized conser 98.5 3.4E-07 7.4E-12 98.6 8.3 107 70-198 211-321 (625)
18 PF01535 PPR: PPR repeat; Int 98.4 2.9E-07 6.4E-12 61.7 3.4 31 103-133 1-31 (31)
19 PF13812 PPR_3: Pentatricopept 98.4 4.4E-07 9.5E-12 62.2 4.1 34 102-135 1-34 (34)
20 TIGR02917 PEP_TPR_lipo putativ 97.6 0.00051 1.1E-08 73.2 11.6 60 70-131 537-596 (899)
21 TIGR02917 PEP_TPR_lipo putativ 97.6 0.00052 1.1E-08 73.1 11.6 125 70-199 503-645 (899)
22 PF10037 MRP-S27: Mitochondria 97.5 0.0004 8.7E-09 75.2 9.4 105 66-186 65-171 (429)
23 PF08579 RPM2: Mitochondrial r 97.1 0.0036 7.8E-08 57.8 9.3 79 71-166 30-117 (120)
24 cd00189 TPR Tetratricopeptide 97.1 0.0096 2.1E-07 44.0 10.1 92 72-182 6-97 (100)
25 PF08579 RPM2: Mitochondrial r 96.8 0.0029 6.3E-08 58.4 6.6 78 106-199 29-114 (120)
26 TIGR02521 type_IV_pilW type IV 96.7 0.025 5.4E-07 50.3 11.1 95 70-183 35-129 (234)
27 TIGR02521 type_IV_pilW type IV 96.7 0.037 7.9E-07 49.3 12.1 112 69-182 68-198 (234)
28 KOG4422 Uncharacterized conser 96.5 0.0065 1.4E-07 66.6 7.1 97 65-178 237-338 (625)
29 PF10037 MRP-S27: Mitochondria 96.4 0.013 2.8E-07 63.8 8.8 80 70-166 107-186 (429)
30 TIGR02795 tol_pal_ybgF tol-pal 96.3 0.083 1.8E-06 43.7 11.5 97 72-183 8-106 (119)
31 TIGR02552 LcrH_SycD type III s 96.1 0.078 1.7E-06 45.7 10.7 94 71-183 22-115 (135)
32 PF06239 ECSIT: Evolutionarily 96.0 0.027 5.8E-07 57.0 8.5 83 77-179 63-161 (228)
33 PF06239 ECSIT: Evolutionarily 95.6 0.033 7.1E-07 56.4 7.1 82 99-197 44-146 (228)
34 PRK15359 type III secretion sy 95.6 0.14 3.1E-06 46.6 10.6 94 74-188 32-125 (144)
35 PF12895 Apc3: Anaphase-promot 95.3 0.034 7.5E-07 45.5 5.1 81 79-178 2-83 (84)
36 PF12921 ATP13: Mitochondrial 94.6 0.24 5.2E-06 45.5 9.1 93 101-197 1-96 (126)
37 PF13429 TPR_15: Tetratricopep 94.6 0.13 2.8E-06 50.5 7.8 95 71-183 115-210 (280)
38 PF14559 TPR_19: Tetratricopep 94.5 0.16 3.4E-06 39.3 6.5 53 77-131 2-54 (68)
39 PF04733 Coatomer_E: Coatomer 94.4 0.26 5.7E-06 50.7 9.8 37 150-188 198-234 (290)
40 PF09295 ChAPs: ChAPs (Chs5p-A 94.0 0.59 1.3E-05 50.6 11.9 121 65-209 164-292 (395)
41 PLN03088 SGT1, suppressor of 94.0 0.57 1.2E-05 49.1 11.5 94 74-188 10-103 (356)
42 PRK15174 Vi polysaccharide exp 93.8 0.59 1.3E-05 52.8 11.9 33 150-182 348-381 (656)
43 TIGR00990 3a0801s09 mitochondr 93.8 0.53 1.2E-05 52.0 11.3 56 73-131 338-394 (615)
44 PF03704 BTAD: Bacterial trans 93.8 0.18 3.9E-06 44.9 6.4 63 71-135 67-134 (146)
45 PF13429 TPR_15: Tetratricopep 93.6 0.13 2.8E-06 50.6 5.7 55 74-131 154-209 (280)
46 PF14559 TPR_19: Tetratricopep 93.3 0.19 4E-06 38.9 5.0 55 112-183 1-55 (68)
47 cd05804 StaR_like StaR_like; a 93.1 1.2 2.5E-05 44.6 11.6 92 74-182 122-215 (355)
48 PRK15174 Vi polysaccharide exp 93.1 0.87 1.9E-05 51.5 11.8 57 73-131 49-105 (656)
49 PRK12370 invasion protein regu 93.0 0.77 1.7E-05 50.6 11.1 88 75-182 347-435 (553)
50 PRK11189 lipoprotein NlpI; Pro 93.0 1.1 2.5E-05 45.3 11.4 92 75-188 73-165 (296)
51 PRK12370 invasion protein regu 92.9 1 2.2E-05 49.7 11.7 92 71-182 377-470 (553)
52 PF03704 BTAD: Bacterial trans 92.8 2.5 5.4E-05 37.7 12.1 94 77-187 17-135 (146)
53 cd00189 TPR Tetratricopeptide 92.4 0.93 2E-05 33.3 7.5 63 104-183 2-64 (100)
54 TIGR00990 3a0801s09 mitochondr 92.3 1.4 2.9E-05 48.8 11.8 104 73-181 372-495 (615)
55 PRK10747 putative protoheme IX 92.1 1.4 3.1E-05 46.4 11.3 103 70-179 267-387 (398)
56 PRK10747 putative protoheme IX 91.8 1.4 3.1E-05 46.4 10.8 113 69-185 85-219 (398)
57 PRK09782 bacteriophage N4 rece 91.7 0.93 2E-05 54.2 10.3 96 79-196 589-684 (987)
58 PLN03098 LPA1 LOW PSII ACCUMUL 91.5 2 4.3E-05 47.7 11.7 113 45-168 52-176 (453)
59 PRK10370 formate-dependent nit 91.3 3 6.6E-05 40.3 11.7 94 73-186 80-176 (198)
60 PRK02603 photosystem I assembl 91.3 3.7 8E-05 38.0 11.8 98 71-187 40-152 (172)
61 PF12921 ATP13: Mitochondrial 91.0 0.97 2.1E-05 41.6 7.5 69 65-133 1-84 (126)
62 TIGR03302 OM_YfiO outer membra 91.0 2.5 5.5E-05 40.1 10.6 96 71-182 38-144 (235)
63 PRK11447 cellulose synthase su 90.9 2 4.4E-05 51.4 12.1 95 69-183 606-701 (1157)
64 KOG4318 Bicoid mRNA stability 90.4 0.9 1.9E-05 53.9 8.2 78 99-196 201-278 (1088)
65 PRK11447 cellulose synthase su 90.1 2.9 6.3E-05 50.2 12.4 111 75-189 278-419 (1157)
66 PF13432 TPR_16: Tetratricopep 90.0 1.1 2.5E-05 34.5 6.2 56 109-182 4-60 (65)
67 PF13424 TPR_12: Tetratricopep 90.0 0.66 1.4E-05 37.0 5.0 67 103-180 6-73 (78)
68 PF13432 TPR_16: Tetratricopep 89.9 1.2 2.6E-05 34.4 6.2 55 74-131 5-60 (65)
69 PRK10049 pgaA outer membrane p 89.0 4 8.6E-05 47.0 12.0 97 70-188 53-149 (765)
70 PF09976 TPR_21: Tetratricopep 88.3 4 8.7E-05 36.8 9.3 84 74-178 56-143 (145)
71 TIGR02795 tol_pal_ybgF tol-pal 88.2 3.3 7.1E-05 34.2 8.0 65 104-183 4-69 (119)
72 PRK10049 pgaA outer membrane p 87.9 4.2 9.1E-05 46.8 11.3 96 71-188 364-460 (765)
73 PRK09782 bacteriophage N4 rece 87.7 5.2 0.00011 48.1 12.2 93 72-183 615-707 (987)
74 PRK10803 tol-pal system protei 87.5 10 0.00022 38.9 12.6 91 76-183 153-247 (263)
75 TIGR02552 LcrH_SycD type III s 87.2 4.9 0.00011 34.6 8.8 73 101-192 16-88 (135)
76 TIGR00540 hemY_coli hemY prote 87.1 7.4 0.00016 41.2 11.8 113 71-186 87-220 (409)
77 PRK15359 type III secretion sy 86.6 5.7 0.00012 36.3 9.3 77 105-200 27-103 (144)
78 PF13512 TPR_18: Tetratricopep 86.2 6.5 0.00014 37.5 9.7 91 76-182 20-128 (142)
79 PF13371 TPR_9: Tetratricopept 86.1 3.7 8E-05 32.1 6.9 58 110-184 3-60 (73)
80 PRK15179 Vi polysaccharide bio 85.5 7.3 0.00016 45.2 11.5 102 74-197 94-199 (694)
81 CHL00033 ycf3 photosystem I as 85.2 15 0.00033 33.6 11.5 91 71-178 40-138 (168)
82 TIGR00540 hemY_coli hemY prote 84.3 8.1 0.00018 40.9 10.5 107 67-178 264-395 (409)
83 cd05804 StaR_like StaR_like; a 83.5 8.2 0.00018 38.7 9.6 57 109-182 121-177 (355)
84 KOG3941 Intermediate in Toll s 83.1 3.9 8.4E-05 43.9 7.3 78 74-168 80-173 (406)
85 PRK14574 hmsH outer membrane p 83.0 8.4 0.00018 45.6 10.8 111 71-188 73-202 (822)
86 PF05843 Suf: Suppressor of fo 82.9 5.1 0.00011 40.7 8.0 107 72-197 7-115 (280)
87 PF09295 ChAPs: ChAPs (Chs5p-A 82.4 10 0.00022 41.4 10.4 92 68-179 202-294 (395)
88 PRK15179 Vi polysaccharide bio 82.1 13 0.00028 43.2 11.8 91 71-181 125-216 (694)
89 PF04156 IncA: IncA protein; 82.1 25 0.00053 33.5 11.8 24 534-557 166-189 (191)
90 PF10112 Halogen_Hydrol: 5-bro 81.7 50 0.0011 32.0 14.0 49 449-501 102-150 (199)
91 KOG4570 Uncharacterized conser 81.1 3.2 6.9E-05 44.9 6.0 118 58-182 26-164 (418)
92 PRK11189 lipoprotein NlpI; Pro 80.5 12 0.00027 37.9 9.7 101 75-194 35-137 (296)
93 PF13414 TPR_11: TPR repeat; P 80.2 8.4 0.00018 29.8 6.7 63 102-181 3-66 (69)
94 PF13424 TPR_12: Tetratricopep 79.9 5.1 0.00011 31.9 5.5 59 71-129 10-73 (78)
95 PF08656 DASH_Dad3: DASH compl 79.9 4.2 9.1E-05 35.4 5.3 46 421-466 4-56 (78)
96 COG3923 PriC Primosomal replic 78.8 8.4 0.00018 38.0 7.5 76 401-489 98-173 (175)
97 TIGR03302 OM_YfiO outer membra 78.3 20 0.00042 34.1 9.8 108 72-182 76-195 (235)
98 COG5010 TadD Flp pilus assembl 78.2 28 0.00062 36.4 11.5 99 68-185 102-200 (257)
99 COG4783 Putative Zn-dependent 78.2 21 0.00046 40.2 11.3 101 76-181 316-436 (484)
100 PF12688 TPR_5: Tetratrico pep 77.7 26 0.00057 32.1 10.0 89 76-180 11-102 (120)
101 PLN03098 LPA1 LOW PSII ACCUMUL 77.5 9.7 0.00021 42.5 8.5 65 100-182 73-141 (453)
102 PRK14472 F0F1 ATP synthase sub 77.3 18 0.00038 34.6 9.2 39 367-410 7-45 (175)
103 COG3063 PilF Tfp pilus assembl 76.8 20 0.00044 37.3 9.9 92 76-184 113-204 (250)
104 KOG1840 Kinesin light chain [C 76.2 21 0.00046 40.3 10.8 102 68-180 369-477 (508)
105 KOG4318 Bicoid mRNA stability 76.2 7 0.00015 46.9 7.2 98 70-171 208-320 (1088)
106 PRK14574 hmsH outer membrane p 76.1 17 0.00037 43.1 10.5 107 66-182 36-165 (822)
107 COG4783 Putative Zn-dependent 75.5 16 0.00034 41.2 9.4 93 68-182 276-369 (484)
108 PF13371 TPR_9: Tetratricopept 75.4 10 0.00023 29.5 6.0 57 74-132 3-59 (73)
109 COG3063 PilF Tfp pilus assembl 75.2 38 0.00081 35.4 11.3 93 73-184 42-134 (250)
110 PRK02603 photosystem I assembl 75.0 23 0.0005 32.7 9.1 71 101-188 34-105 (172)
111 KOG4570 Uncharacterized conser 74.8 5.6 0.00012 43.1 5.6 60 71-131 105-164 (418)
112 COG5010 TadD Flp pilus assembl 72.8 24 0.00053 36.8 9.5 101 74-195 74-174 (257)
113 PRK10370 formate-dependent nit 72.5 34 0.00074 33.2 9.9 96 78-194 51-149 (198)
114 PF04733 Coatomer_E: Coatomer 72.4 14 0.0003 38.3 7.7 63 66-131 129-196 (290)
115 PF09976 TPR_21: Tetratricopep 72.2 42 0.00092 30.2 9.9 93 72-181 18-113 (145)
116 PF12895 Apc3: Anaphase-promot 71.1 5.4 0.00012 32.6 3.6 52 72-127 31-83 (84)
117 COG2956 Predicted N-acetylgluc 70.3 22 0.00047 38.9 8.7 95 67-183 34-137 (389)
118 PRK11637 AmiB activator; Provi 69.3 1.7E+02 0.0038 31.7 15.4 26 469-494 102-127 (428)
119 PF10168 Nup88: Nuclear pore c 68.4 40 0.00086 39.7 11.0 103 429-545 560-665 (717)
120 KOG1840 Kinesin light chain [C 68.3 21 0.00046 40.3 8.5 99 71-179 204-309 (508)
121 PF09403 FadA: Adhesion protei 68.0 30 0.00066 32.5 8.2 82 420-501 34-124 (126)
122 KOG3081 Vesicle coat complex C 66.8 28 0.00061 37.0 8.5 48 76-130 118-165 (299)
123 PRK10866 outer membrane biogen 66.8 37 0.00081 34.1 9.2 57 74-133 40-100 (243)
124 PF13374 TPR_10: Tetratricopep 66.8 12 0.00027 25.8 4.2 29 153-181 2-30 (42)
125 KOG3941 Intermediate in Toll s 66.5 6.5 0.00014 42.3 3.9 68 114-198 84-167 (406)
126 PF13414 TPR_11: TPR repeat; P 65.9 15 0.00032 28.4 4.9 54 74-129 11-65 (69)
127 PF11932 DUF3450: Protein of u 64.8 21 0.00045 35.9 7.0 22 420-441 49-70 (251)
128 PF12569 NARP1: NMDA receptor- 64.6 52 0.0011 37.2 10.6 93 74-186 202-295 (517)
129 PF13525 YfiO: Outer membrane 63.1 46 0.001 32.0 8.7 58 75-132 14-72 (203)
130 PF04840 Vps16_C: Vps16, C-ter 62.2 27 0.00059 36.9 7.5 97 67-176 179-285 (319)
131 PRK10153 DNA-binding transcrip 62.2 52 0.0011 37.0 10.0 64 100-181 418-481 (517)
132 COG1729 Uncharacterized protei 59.9 1E+02 0.0023 32.3 11.1 93 76-182 151-244 (262)
133 smart00299 CLH Clathrin heavy 58.7 1.3E+02 0.0029 26.6 10.3 54 70-126 11-64 (140)
134 PF06368 Met_asp_mut_E: Methyl 58.3 17 0.00037 40.5 5.4 141 70-223 51-213 (441)
135 KOG1915 Cell cycle control pro 58.3 56 0.0012 37.6 9.3 82 79-181 154-235 (677)
136 PF05843 Suf: Suppressor of fo 55.6 59 0.0013 33.1 8.5 95 67-182 38-136 (280)
137 KOG0547 Translocase of outer m 55.6 51 0.0011 37.8 8.5 109 80-212 408-517 (606)
138 COG3629 DnrI DNA-binding trans 55.4 49 0.0011 34.9 7.9 67 104-187 155-226 (280)
139 KOG3081 Vesicle coat complex C 55.1 47 0.001 35.5 7.6 60 70-131 177-236 (299)
140 PF05266 DUF724: Protein of un 54.9 81 0.0018 31.4 9.0 88 431-531 90-177 (190)
141 COG3629 DnrI DNA-binding trans 53.5 52 0.0011 34.7 7.7 58 71-130 158-215 (280)
142 PF13176 TPR_7: Tetratricopept 52.9 27 0.00058 24.9 4.0 26 155-180 1-26 (36)
143 CHL00033 ycf3 photosystem I as 51.6 97 0.0021 28.4 8.5 68 102-186 35-103 (168)
144 PRK08691 DNA polymerase III su 51.6 94 0.002 36.8 10.1 99 82-187 180-279 (709)
145 PF13176 TPR_7: Tetratricopept 51.3 22 0.00048 25.3 3.3 26 104-129 1-26 (36)
146 PF12732 YtxH: YtxH-like prote 51.2 1.2E+02 0.0025 25.3 8.1 50 388-446 3-52 (74)
147 PF14689 SPOB_a: Sensor_kinase 51.0 20 0.00043 29.2 3.4 30 152-181 22-51 (62)
148 COG2987 HutU Urocanate hydrata 50.7 14 0.00031 41.6 3.3 65 62-140 197-263 (561)
149 PF10191 COG7: Golgi complex c 49.8 80 0.0017 37.3 9.3 54 409-462 63-119 (766)
150 PF10366 Vps39_1: Vacuolar sor 49.5 55 0.0012 29.5 6.3 26 105-130 42-67 (108)
151 COG3071 HemY Uncharacterized e 48.6 1.8E+02 0.0039 32.5 11.0 100 68-186 265-394 (400)
152 PF00637 Clathrin: Region in C 48.4 6.9 0.00015 34.7 0.4 85 71-179 12-96 (143)
153 KOG2796 Uncharacterized conser 47.8 70 0.0015 34.5 7.6 118 68-186 179-319 (366)
154 TIGR02561 HrpB1_HrpK type III 47.5 1.6E+02 0.0035 28.8 9.5 52 79-132 23-74 (153)
155 KOG1129 TPR repeat-containing 47.2 1.7E+02 0.0037 32.6 10.5 72 64-140 221-292 (478)
156 PF07445 priB_priC: Primosomal 47.1 59 0.0013 31.7 6.6 66 417-488 103-170 (173)
157 PF13374 TPR_10: Tetratricopep 47.1 37 0.00081 23.3 4.0 28 103-130 3-30 (42)
158 PRK15363 pathogenicity island 46.9 2.1E+02 0.0045 28.0 10.1 98 65-182 32-132 (157)
159 PLN03088 SGT1, suppressor of 46.3 74 0.0016 33.6 7.7 67 110-195 10-76 (356)
160 PF12569 NARP1: NMDA receptor- 46.3 1.5E+02 0.0032 33.7 10.4 87 76-182 14-106 (517)
161 PRK14958 DNA polymerase III su 45.9 1.6E+02 0.0034 33.3 10.4 98 82-186 180-278 (509)
162 KOG2002 TPR-containing nuclear 45.8 63 0.0014 39.4 7.7 52 78-131 624-675 (1018)
163 PF13934 ELYS: Nuclear pore co 45.3 1E+02 0.0022 31.0 8.1 84 71-181 81-168 (226)
164 KOG1156 N-terminal acetyltrans 45.1 1.3E+02 0.0029 35.4 9.8 107 70-199 375-482 (700)
165 TIGR00162 conserved hypothetic 44.9 26 0.00057 34.4 3.8 52 490-551 131-183 (188)
166 PF09613 HrpB1_HrpK: Bacterial 43.5 89 0.0019 30.6 7.1 58 109-183 17-74 (160)
167 PF10475 DUF2450: Protein of u 42.9 2.5E+02 0.0055 29.0 10.7 58 408-465 20-81 (291)
168 KOG4340 Uncharacterized conser 42.9 1E+02 0.0022 33.9 8.0 57 76-134 154-210 (459)
169 PF07794 DUF1633: Protein of u 42.5 90 0.002 36.0 7.8 65 487-554 650-719 (790)
170 PRK10803 tol-pal system protei 40.7 1.1E+02 0.0024 31.4 7.8 63 102-182 143-209 (263)
171 PF04840 Vps16_C: Vps16, C-ter 40.5 1.4E+02 0.0031 31.6 8.7 71 104-178 179-262 (319)
172 PRK10564 maltose regulon perip 40.2 35 0.00077 36.5 4.2 36 99-134 253-289 (303)
173 PRK14956 DNA polymerase III su 40.1 1.7E+02 0.0037 33.2 9.6 114 67-186 163-281 (484)
174 PF13428 TPR_14: Tetratricopep 39.8 54 0.0012 24.1 4.0 32 155-188 3-34 (44)
175 KOG3060 Uncharacterized conser 39.8 2E+02 0.0043 30.8 9.4 99 75-193 21-124 (289)
176 PRK03918 chromosome segregatio 39.5 5.7E+02 0.012 29.9 14.0 35 420-454 145-185 (880)
177 cd00584 Prefoldin_alpha Prefol 39.3 2.3E+02 0.005 25.5 8.7 41 418-458 4-44 (129)
178 PRK14963 DNA polymerase III su 39.2 2.1E+02 0.0046 32.2 10.2 97 82-186 177-274 (504)
179 KOG4626 O-linked N-acetylgluco 38.7 1.5E+02 0.0032 35.4 8.9 105 78-187 298-420 (966)
180 KOG4466 Component of histone d 38.3 56 0.0012 34.8 5.2 64 445-509 36-99 (291)
181 PF09205 DUF1955: Domain of un 38.0 1.5E+02 0.0032 29.2 7.5 62 70-133 90-151 (161)
182 TIGR02561 HrpB1_HrpK type III 37.8 1.2E+02 0.0026 29.8 6.9 57 113-186 21-78 (153)
183 PF09731 Mitofilin: Mitochondr 37.0 5.5E+02 0.012 28.9 13.0 40 514-553 369-408 (582)
184 PRK14951 DNA polymerase III su 36.8 2.4E+02 0.0052 32.9 10.3 98 82-186 185-283 (618)
185 PRK04841 transcriptional regul 36.6 1.9E+02 0.004 33.4 9.5 100 73-181 498-601 (903)
186 PRK13460 F0F1 ATP synthase sub 36.6 1.9E+02 0.0042 27.6 8.2 34 376-410 10-43 (173)
187 COG5107 RNA14 Pre-mRNA 3'-end 36.3 56 0.0012 37.4 5.1 68 103-186 398-466 (660)
188 KOG1126 DNA-binding cell divis 36.0 1.5E+02 0.0032 34.9 8.4 99 76-195 499-597 (638)
189 PRK14971 DNA polymerase III su 35.4 2.5E+02 0.0054 32.5 10.2 97 83-186 183-280 (614)
190 TIGR00763 lon ATP-dependent pr 35.0 2.8E+02 0.0061 32.7 10.7 39 419-462 175-213 (775)
191 PF11846 DUF3366: Domain of un 35.0 96 0.0021 29.5 5.9 32 150-181 141-172 (193)
192 PF04184 ST7: ST7 protein; In 34.9 1.3E+02 0.0027 34.7 7.5 54 75-128 268-321 (539)
193 PRK14961 DNA polymerase III su 34.4 3.1E+02 0.0066 29.1 10.0 99 81-186 179-278 (363)
194 PRK03564 formate dehydrogenase 34.3 1.3E+02 0.0029 32.2 7.3 67 172-238 163-234 (309)
195 PF11663 Toxin_YhaV: Toxin wit 34.1 24 0.00053 33.9 1.7 27 162-188 104-130 (140)
196 PF02426 MIase: Muconolactone 33.6 20 0.00043 32.0 1.0 60 503-562 5-74 (91)
197 KOG4626 O-linked N-acetylgluco 33.1 2.9E+02 0.0063 33.2 10.0 112 70-186 324-453 (966)
198 COG1196 Smc Chromosome segrega 33.1 6.1E+02 0.013 31.4 13.5 33 454-486 379-413 (1163)
199 PF08598 Sds3: Sds3-like; Int 32.8 78 0.0017 30.6 5.0 88 448-544 21-109 (205)
200 PRK07764 DNA polymerase III su 32.7 2.7E+02 0.0059 33.5 10.2 99 82-186 181-280 (824)
201 KOG3091 Nuclear pore complex, 32.4 2.5E+02 0.0054 32.3 9.2 66 412-485 330-405 (508)
202 PRK12402 replication factor C 32.3 3.2E+02 0.0069 27.6 9.4 97 83-186 187-285 (337)
203 smart00544 MA3 Domain in DAP-5 32.0 38 0.00082 29.4 2.4 60 71-133 7-68 (113)
204 PF14689 SPOB_a: Sensor_kinase 32.0 58 0.0012 26.6 3.3 30 101-130 22-51 (62)
205 PRK09973 putative outer membra 31.5 95 0.002 27.8 4.8 24 385-411 5-29 (85)
206 TIGR01541 tape_meas_lam_C phag 31.3 7E+02 0.015 26.9 13.0 85 452-546 64-153 (332)
207 KOG0978 E3 ubiquitin ligase in 31.3 1.9E+02 0.0041 34.4 8.4 113 413-534 360-475 (698)
208 PRK06645 DNA polymerase III su 31.3 3.5E+02 0.0077 30.7 10.3 101 81-186 188-290 (507)
209 PRK06975 bifunctional uroporph 31.0 4.7E+02 0.01 30.6 11.5 33 518-558 397-429 (656)
210 PLN02789 farnesyltranstransfer 30.4 4E+02 0.0086 28.2 10.0 35 152-186 141-175 (320)
211 PLN03025 replication factor C 29.9 4.2E+02 0.0091 27.4 9.9 98 82-187 160-258 (319)
212 TIGR03221 muco_delta muconolac 29.5 24 0.00052 31.7 0.8 60 503-562 4-73 (90)
213 PRK10153 DNA-binding transcrip 29.3 1.1E+02 0.0024 34.5 6.1 50 78-130 432-481 (517)
214 PRK07003 DNA polymerase III su 29.3 3.4E+02 0.0073 33.0 10.1 98 82-186 180-278 (830)
215 PF10366 Vps39_1: Vacuolar sor 28.9 1.5E+02 0.0033 26.7 5.8 27 156-182 42-68 (108)
216 TIGR01000 bacteriocin_acc bact 28.7 8.1E+02 0.018 26.9 12.4 10 534-543 277-286 (457)
217 PRK09109 motC flagellar motor 28.3 5.2E+02 0.011 26.6 10.1 34 370-403 23-56 (246)
218 PF14444 S1-like: S1-like 28.0 47 0.001 27.8 2.2 24 289-318 32-55 (58)
219 PF11663 Toxin_YhaV: Toxin wit 27.5 54 0.0012 31.6 2.8 34 76-112 105-138 (140)
220 COG4455 ImpE Protein of avirul 27.1 1.4E+02 0.0031 31.4 5.9 78 104-199 3-82 (273)
221 PF12072 DUF3552: Domain of un 27.1 6.2E+02 0.013 25.0 11.9 16 523-538 131-146 (201)
222 KOG1174 Anaphase-promoting com 26.9 3.7E+02 0.008 30.9 9.3 122 68-195 334-477 (564)
223 PF12688 TPR_5: Tetratrico pep 26.8 3.1E+02 0.0067 25.2 7.5 58 111-183 10-68 (120)
224 PRK04841 transcriptional regul 26.6 3.5E+02 0.0076 31.3 9.5 95 76-181 462-559 (903)
225 PHA02562 46 endonuclease subun 26.4 8.5E+02 0.018 26.8 12.1 74 412-485 298-373 (562)
226 COG4105 ComL DNA uptake lipopr 26.4 3E+02 0.0066 28.9 8.1 77 77-169 45-122 (254)
227 KOG0495 HAT repeat protein [RN 26.0 4E+02 0.0086 32.2 9.6 129 31-181 530-679 (913)
228 PRK06231 F0F1 ATP synthase sub 25.8 3.1E+02 0.0067 27.3 7.8 51 359-409 18-74 (205)
229 PF13428 TPR_14: Tetratricopep 25.7 1.2E+02 0.0026 22.3 3.8 29 104-132 3-31 (44)
230 KOG0994 Extracellular matrix g 25.6 1E+03 0.022 30.8 13.1 136 413-557 1587-1745(1758)
231 PRK07003 DNA polymerase III su 25.6 2.2E+02 0.0047 34.5 7.7 67 68-135 198-278 (830)
232 PF14362 DUF4407: Domain of un 25.3 7.3E+02 0.016 25.6 10.7 19 466-484 182-200 (301)
233 PF12796 Ank_2: Ankyrin repeat 25.2 2.3E+02 0.005 22.8 5.8 85 74-187 2-86 (89)
234 PF11932 DUF3450: Protein of u 25.1 7.2E+02 0.016 25.1 10.7 11 525-535 147-157 (251)
235 PF08542 Rep_fac_C: Replicatio 25.1 44 0.00096 27.8 1.6 27 162-188 13-39 (89)
236 PF11271 DUF3068: Protein of u 24.7 54 0.0012 34.1 2.5 34 382-415 3-36 (301)
237 COG1848 Predicted nucleic acid 24.6 5.1E+02 0.011 23.2 10.8 60 68-127 4-69 (140)
238 PF04184 ST7: ST7 protein; In 24.3 1.7E+02 0.0036 33.8 6.3 73 108-195 265-337 (539)
239 PF11838 ERAP1_C: ERAP1-like C 24.3 5.7E+02 0.012 25.5 9.5 103 67-188 130-237 (324)
240 PF14938 SNAP: Soluble NSF att 24.2 2.2E+02 0.0047 28.9 6.6 31 154-184 156-186 (282)
241 PRK14952 DNA polymerase III su 24.2 5.6E+02 0.012 29.8 10.4 99 82-186 179-278 (584)
242 smart00544 MA3 Domain in DAP-5 24.0 3E+02 0.0064 23.8 6.6 66 106-171 6-71 (113)
243 KOG1129 TPR repeat-containing 23.9 1.9E+02 0.0042 32.2 6.4 101 68-188 256-359 (478)
244 PF13170 DUF4003: Protein of u 23.8 5.5E+02 0.012 27.1 9.6 91 81-188 118-217 (297)
245 KOG2280 Vacuolar assembly/sort 23.6 1.6E+02 0.0035 35.4 6.1 74 73-178 722-795 (829)
246 PF07426 Dynactin_p22: Dynacti 23.3 4E+02 0.0087 26.2 7.9 37 429-465 7-51 (174)
247 PRK15396 murein lipoprotein; P 23.3 1.6E+02 0.0034 25.9 4.6 7 396-402 18-24 (78)
248 KOG3850 Predicted membrane pro 23.2 5.9E+02 0.013 28.8 9.8 20 525-544 367-387 (455)
249 PRK10787 DNA-binding ATP-depen 23.0 2.6E+02 0.0056 33.4 7.8 105 420-564 178-287 (784)
250 COG2959 HemX Uncharacterized e 22.9 8.3E+02 0.018 27.4 10.9 14 539-557 128-141 (391)
251 PF15070 GOLGA2L5: Putative go 22.9 1E+03 0.022 28.1 12.2 88 452-557 58-146 (617)
252 smart00299 CLH Clathrin heavy 22.8 3.7E+02 0.0081 23.8 7.1 58 102-177 7-64 (140)
253 KOG1914 mRNA cleavage and poly 22.8 2.7E+02 0.0058 32.7 7.4 71 99-186 364-435 (656)
254 PF04011 LemA: LemA family; I 22.6 4.1E+02 0.009 25.6 7.9 87 467-553 24-115 (186)
255 PF04648 MF_alpha: Yeast matin 22.5 40 0.00087 20.8 0.6 8 323-330 5-12 (13)
256 PRK14960 DNA polymerase III su 22.4 5.3E+02 0.011 30.9 9.9 99 81-186 178-277 (702)
257 KOG0161 Myosin class II heavy 22.3 7.7E+02 0.017 32.9 12.0 131 407-555 1077-1239(1930)
258 PF13174 TPR_6: Tetratricopept 22.1 75 0.0016 20.9 2.0 22 110-131 8-29 (33)
259 PF14048 MBD_C: C-terminal dom 21.9 59 0.0013 29.3 1.8 16 471-486 81-96 (96)
260 TIGR03185 DNA_S_dndD DNA sulfu 21.8 1.2E+03 0.027 26.8 12.7 35 524-558 487-521 (650)
261 PF13093 FTA4: Kinetochore com 21.6 1.8E+02 0.0038 29.5 5.3 47 420-466 135-181 (213)
262 KOG1156 N-terminal acetyltrans 21.6 2.6E+02 0.0055 33.3 7.1 95 74-180 413-509 (700)
263 PF10186 Atg14: UV radiation r 21.6 8E+02 0.017 24.4 14.1 24 419-442 26-49 (302)
264 PRK06585 holA DNA polymerase I 21.3 6E+02 0.013 26.3 9.2 100 82-186 144-244 (343)
265 KOG1126 DNA-binding cell divis 21.2 4.6E+02 0.01 31.0 9.0 93 74-186 531-624 (638)
266 PRK06743 flagellar motor prote 21.2 7.1E+02 0.015 26.0 9.6 30 374-403 24-53 (254)
267 KOG2053 Mitochondrial inherita 20.6 3.6E+02 0.0078 33.1 8.2 81 75-175 52-132 (932)
268 PF00515 TPR_1: Tetratricopept 20.6 2E+02 0.0044 19.3 4.0 28 103-130 2-29 (34)
269 TIGR01503 MthylAspMut_E methyl 20.6 4.2E+02 0.0091 30.3 8.3 144 68-224 88-253 (480)
270 KOG2376 Signal recognition par 20.4 3.7E+02 0.0081 31.7 8.0 84 75-185 55-142 (652)
271 PF11846 DUF3366: Domain of un 20.3 2.2E+02 0.0049 27.0 5.5 54 78-131 120-173 (193)
272 KOG2002 TPR-containing nuclear 20.2 1.4E+02 0.0031 36.6 4.9 16 29-44 560-575 (1018)
273 PRK14953 DNA polymerase III su 20.2 6.1E+02 0.013 28.6 9.5 99 82-186 180-278 (486)
274 PRK08691 DNA polymerase III su 20.1 4.4E+02 0.0095 31.5 8.7 68 67-135 197-278 (709)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=5.7e-23 Score=223.63 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=124.3
Q ss_pred chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccc
Q 047498 67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDR 145 (566)
Q Consensus 67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~ 145 (566)
..-|+||++|||.|++++|.++|++|.+ +|+++||+||+|||+.|++++|+++|++|.+.|+.||.+|| +++.+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3446777777777777777777777753 46777777777777777777777777777777777766666 33221
Q ss_pred -----------------------------------c--------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 047498 146 -----------------------------------W--------------KWSRPDVSVYTSLVQSLAASLKVSDALRLI 176 (566)
Q Consensus 146 -----------------------------------~--------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLL 176 (566)
+ ++..||++|||+||.|||+.|+.++|+++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 1 123799999999999999999999999999
Q ss_pred HHHHhCCCCCCCcccccceeccch----hhHHHHhhccc---Cccee-------eeccccc-----ccceeeeceeeeee
Q 047498 177 DDISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQPQ---HGIQI-------VSCAKCR-----YKYELVSGDIVSIH 237 (566)
Q Consensus 177 eEM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Qpq---~Giql-------V~c~~cR-----y~YELfSg~i~s~~ 237 (566)
++|.+.|+.| |.+||++||+++. .++|..+++.+ +|++. +++++|| .++++|..
T Consensus 415 ~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~------ 487 (697)
T PLN03081 415 ERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------ 487 (697)
T ss_pred HHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH------
Confidence 9999999999 8999999999553 24888887744 57763 6777775 34455421
Q ss_pred ecccccChHHHHHHHHHHH
Q 047498 238 SEEISMDIPAWKRGLRFLQ 256 (566)
Q Consensus 238 se~~~~~~~~~~~~~r~~~ 256 (566)
-.+..|...|...+....
T Consensus 488 -~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 488 -APFKPTVNMWAALLTACR 505 (697)
T ss_pred -CCCCCCHHHHHHHHHHHH
Confidence 123445555555544443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=1.9e-22 Score=232.14 Aligned_cols=138 Identities=18% Similarity=0.267 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW-- 146 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~-- 146 (566)
|+||++||+.|++++|.++|++|.+ .|..||+++||+||++|||.|++++|.++|++|.+.|+.||.+|| +++.++
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5566666666666666666666654 345566666666666666666666666666666666666666666 444333
Q ss_pred ----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCCcccccceeccch-h---hHH
Q 047498 147 ----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR--VGVSPGEEVPFGKVVRCPT-C---LIA 204 (566)
Q Consensus 147 ----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~--rGcsPdDvVTYntLI~C~t-C---~~A 204 (566)
..+.||.+|||+||++|||.|++++|+++|++|.. .|+.| |.+|||+||+++. | ++|
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 01356666666666666666666666666666654 45566 5566666666442 1 255
Q ss_pred HHhhc
Q 047498 205 VAVAQ 209 (566)
Q Consensus 205 ~aV~Q 209 (566)
.++++
T Consensus 599 ~elf~ 603 (1060)
T PLN03218 599 KEVYQ 603 (1060)
T ss_pred HHHHH
Confidence 55544
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=4.2e-22 Score=229.31 Aligned_cols=138 Identities=19% Similarity=0.179 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW-- 146 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~-- 146 (566)
++||++||+.|++++|.++|++|.+ .|..||.++||+||++|||.|++++|+++|++|...|+.||.+|| +++.++
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 5566666666666666666666654 344566666666666666666666666666666666666666666 443322
Q ss_pred ----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch----hhHHHH
Q 047498 147 ----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT----CLIAVA 206 (566)
Q Consensus 147 ----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t----C~~A~a 206 (566)
..+.||.+|||+||++|||.|++++|.++|++|.+.|+.| |++|||+||+++. .++|.+
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 1135666666666666666666666666666666666666 5666666666552 125666
Q ss_pred hhc
Q 047498 207 VAQ 209 (566)
Q Consensus 207 V~Q 209 (566)
+++
T Consensus 741 lf~ 743 (1060)
T PLN03218 741 VLS 743 (1060)
T ss_pred HHH
Confidence 655
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.83 E-value=8.9e-21 Score=210.74 Aligned_cols=136 Identities=14% Similarity=0.169 Sum_probs=103.2
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW 146 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~ 146 (566)
+-|+||++||++|++++|.++|++|.+ ||+++||+||.|||+.|+.++|+++|++|.+.|+.||.+|| .++.++
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 448888888888888888888888873 68888888888888888888888888888888888888888 444221
Q ss_pred -------------------------------------------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 047498 147 -------------------------------------------------KWSRPDVSVYTSLVQSLAASLKVSDALRLID 177 (566)
Q Consensus 147 -------------------------------------------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLe 177 (566)
++..||++|||+||+|||+.|++++|+++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 1236777777777777777777888888888
Q ss_pred HHHhCCCCCCCcccccceeccch----hhHHHHhhc
Q 047498 178 DISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQ 209 (566)
Q Consensus 178 EM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Q 209 (566)
+|.+.|+.| |.+||+++|+++. .+.|.++.+
T Consensus 379 ~M~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 379 LMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHhCCCC-CceeHHHHHHHHhccchHHHHHHHHH
Confidence 888888888 6788888887442 125555544
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=8.1e-20 Score=199.11 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW-- 146 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~-- 146 (566)
+.+|.+|++.|++++|+++|+.|....+..||..|||+||+++++.|+++.|.++|..|.+.|+.||..+| .++..+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 78999999999999999999999853345899999999999999999999999999999999999999999 555433
Q ss_pred ------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498 147 ------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 147 ------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~ 199 (566)
.+..||++|||+||+|||+.|++++|+++|++|.+.|+.| |.+||+++|++.
T Consensus 171 ~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~ 234 (697)
T PLN03081 171 CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRAS 234 (697)
T ss_pred CCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHH
Confidence 3358999999999999999999999999999999999999 789998888743
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=1.3e-19 Score=201.51 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=113.3
Q ss_pred chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccc
Q 047498 67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDR 145 (566)
Q Consensus 67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~ 145 (566)
.+-|+||++|++.|++++|.++|++|.+ ||+++||+||+||||.|+.++|+++|++|...|+.||.+|| .++..
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 3569999999999999999999999974 79999999999999999999999999999999999999988 33221
Q ss_pred c-------------------------------------------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 047498 146 W-------------------------------------------------KWSRPDVSVYTSLVQSLAASLKVSDALRLI 176 (566)
Q Consensus 146 ~-------------------------------------------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLL 176 (566)
+ ++..||++|||+||.|||+.|++++|+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 1 224789999999999999999999999999
Q ss_pred HHHHhCCCCCCCcccccceeccc
Q 047498 177 DDISRVGVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 177 eEM~~rGcsPdDvVTYntLI~C~ 199 (566)
++|.+.|+.| |.+||+++|++.
T Consensus 277 ~~M~~~g~~P-d~~ty~~ll~a~ 298 (857)
T PLN03077 277 FTMRELSVDP-DLMTITSVISAC 298 (857)
T ss_pred HHHHHcCCCC-ChhHHHHHHHHH
Confidence 9999999999 899999999854
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.65 E-value=2.2e-16 Score=119.05 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=48.8
Q ss_pred cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHh
Q 047498 100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAA 165 (566)
Q Consensus 100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCK 165 (566)
||+++||+||+||||.|++++|+++|++|.++|+ .||.+|||+||+||||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~----------------~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI----------------KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999 5999999999999997
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=6.8e-16 Score=116.33 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=47.0
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498 151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~ 199 (566)
||++|||+||+||||.|++++|.++|++|.++|+.| |.+|||++|+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P-~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKP-DSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 899999999986
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=1.6e-11 Score=87.95 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=30.0
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
.||++|||+||+||||.|++++|+++|++|.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6999999999999999999999999999994
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.07 E-value=9.8e-11 Score=83.89 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCCcChhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 047498 97 GGVLTVDECCLIINAAIDRGNTDLALSIFYAMR 129 (566)
Q Consensus 97 Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~ 129 (566)
|..||++|||+||+||||.|++++|+++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 668999999999999999999999999999995
No 11
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.75 E-value=1.3e-08 Score=68.92 Aligned_cols=34 Identities=26% Similarity=0.573 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd 187 (566)
+|||+||++||+.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 5899999999999999999999999999999993
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.68 E-value=7.8e-08 Score=95.98 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=78.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP 151 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P 151 (566)
+.+.+++.|+.++|.++|+++.+. +......+++.|+.+|++.|+.++|.++|++|.+. .|
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------------------~p 280 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE------------------YP 280 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CC
Confidence 334455555555555555555421 11111233455555555555555555555555433 47
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch---h--h--HHHHhhc--ccCccee---eec
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT---C--L--IAVAVAQ--PQHGIQI---VSC 219 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t---C--~--~A~aV~Q--pq~Giql---V~c 219 (566)
|...|+.+++.+++.|++++|+++|+++.+. .| +.++|+.+++... . + ++..+++ ..++++. .+|
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 7777888999999999999999999988876 68 6678887776431 0 1 4444444 1223332 668
Q ss_pred ccccccce
Q 047498 220 AKCRYKYE 227 (566)
Q Consensus 220 ~~cRy~YE 227 (566)
+.|.+..+
T Consensus 358 ~~cg~~~~ 365 (389)
T PRK11788 358 RNCGFTAR 365 (389)
T ss_pred CCCCCCCc
Confidence 88854333
No 13
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.67 E-value=3.2e-08 Score=66.94 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 047498 103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGL 136 (566)
Q Consensus 103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pd 136 (566)
++||+||+|||+.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999765
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.61 E-value=2e-07 Score=93.10 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
+.|...+++.|+.++|.+.|+++.+. .||...++.+...+++.|+.++|.++|+++.+.
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------------------ 311 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR------------------ 311 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------
Confidence 46778999999999999999999852 377777899999999999999999999998865
Q ss_pred CCChHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 047498 150 RPDVSVYTSLVQSLAA---SLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCK---sGRVdEAlkLLeEM~~rGcsPd 187 (566)
.||..+|+.+++++++ .|+.++|+.+|++|.++++.|+
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4999999999999997 5699999999999999999884
No 15
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.52 E-value=8.7e-08 Score=64.24 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGV 184 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc 184 (566)
+|||+||++||+.|++++|.++|++|.++||
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 6999999999999999999999999999997
No 16
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.52 E-value=1.2e-07 Score=64.96 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=32.9
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.|||++|++++|.|++++|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999998
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3.4e-07 Score=98.64 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
.+||+|+||--..+.|.++++|-.+ ..+..+-.+||.||.+-.-.-. .++..||.+..+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm---------------- 269 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM---------------- 269 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc----------------
Confidence 4789999999999999999999876 4567888999999876432221 678999998887
Q ss_pred CCChHhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCCcccccceecc
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDA----LRLIDDISRVGVSPGEEVPFGKVVRC 198 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEA----lkLLeEM~~rGcsPdDvVTYntLI~C 198 (566)
+||..|+|+|+.+..|.|+.++| .+++.||+.-|+.| ..-+|--||.-
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~ 321 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKN 321 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHH
Confidence 69999999999999999977665 57889999999999 88999988873
No 18
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.39 E-value=2.9e-07 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047498 103 DECCLIINAAIDRGNTDLALSIFYAMRSSFD 133 (566)
Q Consensus 103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~ 133 (566)
+|||+||++||+.|++++|.++|++|.++|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999999886
No 19
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.38 E-value=4.4e-07 Score=62.16 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047498 102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQG 135 (566)
Q Consensus 102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P 135 (566)
+.+||++|++|+|.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999975
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.59 E-value=0.00051 Score=73.20 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
..+...+++.|+.++|..+|.++.+. ...+...+..+...+++.|+.++|+++|+++...
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 45566666777777777777777531 2234556667777777777777777777777654
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.59 E-value=0.00052 Score=73.12 Aligned_cols=125 Identities=9% Similarity=0.054 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW-- 146 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~-- 146 (566)
..+.+-+.+.|++++|.+.|+++.+. ...+..+++.+...+++.|+.++|..+|+++...... +...+ .+...+
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHH
Confidence 45677888999999999999999852 2346788999999999999999999999999765431 11111 110000
Q ss_pred ---------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498 147 ---------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 147 ---------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~ 199 (566)
.....+..+|..+.+.+++.|+.++|++.|+++.+. .|++...|..+..++
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAY 645 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 112345666777777777777777777777777654 344445555555443
No 22
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0004 Score=75.18 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=90.2
Q ss_pred cchh-HHHHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498 66 GVVE-EELLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV 143 (566)
Q Consensus 66 ~~~~-~aLIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi 143 (566)
+.+| .++++.+...-++|++.+++.+......+ ..-..|..++|..|.+.|..++|+++++.=...|+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi---------- 134 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI---------- 134 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc----------
Confidence 3466 67889888899999999998888643333 23345778999999999999999999999888898
Q ss_pred cccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 144 DRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 144 ~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
-||-+|||.|+|.|-|.|...+|.++..+|...+...
T Consensus 135 ------F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~ 171 (429)
T PF10037_consen 135 ------FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFD 171 (429)
T ss_pred ------CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccC
Confidence 5999999999999999999999999999999987665
No 23
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.08 E-value=0.0036 Score=57.79 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=69.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCC--------hhHHHHHHHHHHhcCCCCCCCccc
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGN--------TDLALSIFYAMRSSFDQGLSENGT 141 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGr--------VDeAlsLF~EM~srG~~PdvvTYa 141 (566)
.-|..+...+++.....+++..+. .|. .|++.+||.++.+.+++.- +-..+.+|+.|...++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l-------- 100 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL-------- 100 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc--------
Confidence 457778888999999999999984 566 8999999999999999875 4567889999999988
Q ss_pred cccccccCCCChHhHHHHHHHHHhc
Q 047498 142 LVDRWKWSRPDVSVYTSLVQSLAAS 166 (566)
Q Consensus 142 Li~~~rw~~PDVVTYNTLIdGLCKs 166 (566)
+||--|||++|..|.|.
T Consensus 101 --------KP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 101 --------KPNDETYNIVLGSLLKG 117 (120)
T ss_pred --------CCcHHHHHHHHHHHHHh
Confidence 59999999999999874
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.08 E-value=0.0096 Score=43.97 Aligned_cols=92 Identities=16% Similarity=0.042 Sum_probs=73.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP 151 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P 151 (566)
+...+...|+.++|.+.|.+..+. ...+...+..+-..+...|+.++|.+.|++...... .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~ 66 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-----------------D 66 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------c
Confidence 344567789999999999998742 222346678888999999999999999999876543 3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
+..++..+...+.+.|+.++|.+.+.+..+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 4468889999999999999999999887653
No 25
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.84 E-value=0.0029 Score=58.36 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcC--------CHHHHHHHHH
Q 047498 106 CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASL--------KVSDALRLID 177 (566)
Q Consensus 106 NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsG--------RVdEAlkLLe 177 (566)
..-|.-+...|+...-..+|+..++.|+. .|.+-+||.++++.|+.. ++-+.+-++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~---------------lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYq 93 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGIT---------------LPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQ 93 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCC---------------CCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 45567777779999999999999999984 599999999999999975 4667888999
Q ss_pred HHHhCCCCCCCcccccceeccc
Q 047498 178 DISRVGVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 178 EM~~rGcsPdDvVTYntLI~C~ 199 (566)
+|...+++| +.-|||++|.+.
T Consensus 94 DiL~~~lKP-~~etYnivl~~L 114 (120)
T PF08579_consen 94 DILSNKLKP-NDETYNIVLGSL 114 (120)
T ss_pred HHHHhccCC-cHHHHHHHHHHH
Confidence 999999999 789999999875
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.66 E-value=0.025 Score=50.30 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
..+-..+.+.|+.++|.+.|.+..+. ..-+...++.+-..+.+.|+.++|.+.|++.....-
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------- 96 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP---------------- 96 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----------------
Confidence 34556677788888888888887642 222456677788888888888888888888765432
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
.+...|+.+...+.+.|+.++|.+.|++..+..
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 97 -NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred -CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 334556666777777777777777777776643
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.65 E-value=0.037 Score=49.26 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=69.5
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC-cc-ccc---
Q 047498 69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE-NG-TLV--- 143 (566)
Q Consensus 69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv-TY-aLi--- 143 (566)
-..+-..+...|+.++|.+.+++..+. ...+...++.+-..+++.|+.++|.+.|++.......++.. .+ .+.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345566777899999999999988742 22345677888889999999999999999987643211110 00 000
Q ss_pred ---ccc-----------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 144 ---DRW-----------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 144 ---~~~-----------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
..+ .....+...|..+..-+.+.|+.++|.+.+++....
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 011123445666666666666666666666666554
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.0065 Score=66.63 Aligned_cols=97 Identities=22% Similarity=0.215 Sum_probs=76.8
Q ss_pred ccchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHH----HHHHHHHHhcCCCCCCCcc
Q 047498 65 NGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLA----LSIFYAMRSSFDQGLSENG 140 (566)
Q Consensus 65 ~~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeA----lsLF~EM~srG~~PdvvTY 140 (566)
...+|+.-.+|+--+-.+-..-+++.||.. ....||..|+|+|+++..|.|+.+.| ++++.||+.-|+.
T Consensus 237 k~kv~~~aFN~lI~~~S~~~~K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVe------ 309 (625)
T KOG4422|consen 237 KGKVYREAFNGLIGASSYSVGKKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVE------ 309 (625)
T ss_pred hheeeHHhhhhhhhHHHhhccHHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC------
Confidence 345776666666666666666899999985 56799999999999999999987665 5688999999994
Q ss_pred ccccccccCCCChHhHHHHHHHHHhcCCHHH-HHHHHHH
Q 047498 141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSD-ALRLIDD 178 (566)
Q Consensus 141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdE-AlkLLeE 178 (566)
|..-||--+|.-+|+.+.-.+ |.-.+.+
T Consensus 310 ----------PsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 310 ----------PSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred ----------cchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 999999999999999886532 4444433
No 29
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.36 E-value=0.013 Score=63.76 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
.++|+.|-+-|..++++++++.=.. .|.-||-.|||.||+.|.|.|+...|.+++-+|...+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~---------------- 169 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEE---------------- 169 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhc----------------
Confidence 5899999999999999999999886 88899999999999999999999999999999998876
Q ss_pred CCChHhHHHHHHHHHhc
Q 047498 150 RPDVSVYTSLVQSLAAS 166 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKs 166 (566)
..|-.||..-+.++++.
T Consensus 170 ~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 170 FDNPSTQALALYSCYKY 186 (429)
T ss_pred cCCchHHHHHHHHHHHh
Confidence 25667888878877776
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.33 E-value=0.083 Score=43.67 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=73.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
+...+-+.|+.++|.+.|.++...... ......+..+-..+.+.|+.++|++.|++.....-. .
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------------~ 72 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------------S 72 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---------------C
Confidence 344577899999999999999743211 112345677999999999999999999998864211 1
Q ss_pred C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 151 P-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 151 P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
| ....+..+-..+-+.|+.++|.+.++++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 1 13456677778889999999999999999874
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.10 E-value=0.078 Score=45.74 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=77.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.+-..+.+.|+.++|.+.|...... ...+...|..+-..+.+.|+.++|...|+.......
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----------------- 82 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP----------------- 82 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence 4456678899999999999998742 234667788888999999999999999998775542
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
.|..+|--+=..+.+.|+.++|++.|+...+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 466777778889999999999999999888853
No 32
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.05 E-value=0.027 Score=57.00 Aligned_cols=83 Identities=8% Similarity=0.091 Sum_probs=69.3
Q ss_pred HcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcC----------------ChhHHHHHHHHHHhcCCCCCCCcc
Q 047498 77 SGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRG----------------NTDLALSIFYAMRSSFDQGLSENG 140 (566)
Q Consensus 77 CKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaG----------------rVDeAlsLF~EM~srG~~PdvvTY 140 (566)
-+.|.++=-..-++.|.+ .|..-|..+||.||+.|=|.. +.+-|++|++.|...|+
T Consensus 63 ~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV------- 134 (228)
T PF06239_consen 63 RRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGV------- 134 (228)
T ss_pred CCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCC-------
Confidence 346888888889999998 788889999999999998843 34779999999999999
Q ss_pred ccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
.||.-||..|++-|.+. +.+++-+.+|
T Consensus 135 ---------~Pd~Et~~~ll~iFG~~---s~p~~K~~rm 161 (228)
T PF06239_consen 135 ---------MPDKETEQMLLNIFGRK---SHPMKKYRRM 161 (228)
T ss_pred ---------CCcHHHHHHHHHHhccc---cHHHHHHHHH
Confidence 69999999999999554 4566666665
No 33
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.61 E-value=0.033 Score=56.38 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=69.1
Q ss_pred CcChhhhHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcC------
Q 047498 99 VLTVDECCLIINAAIDR-----GNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASL------ 167 (566)
Q Consensus 99 ~PDvvTYNsLI~GlCKa-----GrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsG------ 167 (566)
.-|-.+|..+|+.|++. |.|+=-..-++.|.+.|+. =|.-+||.|+|.|=|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~----------------kDL~~Y~~LLDvFPKg~fvp~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE----------------KDLEVYKALLDVFPKGKFVPRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc----------------ccHHHHHHHHHhCCCCCcccccH
Confidence 34677788888888754 8888888899999999994 78888888888887732
Q ss_pred ----------CHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498 168 ----------KVSDALRLIDDISRVGVSPGEEVPFGKVVR 197 (566)
Q Consensus 168 ----------RVdEAlkLLeEM~~rGcsPdDvVTYntLI~ 197 (566)
+.+=|+++|++|...||-| |.-||..|++
T Consensus 108 fQ~~F~hyp~Qq~c~i~lL~qME~~gV~P-d~Et~~~ll~ 146 (228)
T PF06239_consen 108 FQAEFMHYPRQQECAIDLLEQMENNGVMP-DKETEQMLLN 146 (228)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHH
Confidence 3467999999999999999 7899999998
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.58 E-value=0.14 Score=46.61 Aligned_cols=94 Identities=6% Similarity=-0.170 Sum_probs=79.2
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV 153 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV 153 (566)
..+...|++++|.+.|+..... ...+...|+.+-..+-+.|++++|...|+....... .|.
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----------------~~~ 92 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----------------SHP 92 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCc
Confidence 4567799999999999998742 235778889999999999999999999999986532 578
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
.+|.-+-..|-+.|+.++|++.|+.-.+ ..|++
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 8888899999999999999999999877 45644
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.29 E-value=0.034 Score=45.47 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh-HhHH
Q 047498 79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV-SVYT 157 (566)
Q Consensus 79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV-VTYN 157 (566)
.|++++|+.+++++.+.....++...+-.+-.++++.|+.++|++++++ ...+ |+- -..-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------------------~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------------------PSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------------------HCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------------------CCCHHHHH
Confidence 5889999999999975321112333344489999999999999999988 3221 322 3333
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 047498 158 SLVQSLAASLKVSDALRLIDD 178 (566)
Q Consensus 158 TLIdGLCKsGRVdEAlkLLeE 178 (566)
.+-+.|-+.|+.++|++.|++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 446678899999999999975
No 36
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.60 E-value=0.24 Score=45.46 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=66.5
Q ss_pred ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--CccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498 101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLS--ENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDD 178 (566)
Q Consensus 101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv--vTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE 178 (566)
|..+++++|-++++.|+++.-.++.+.. .|+..+. .+..+ .......|+.-+-.+++++||.+|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~~-~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGDY-PPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCcc-CCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5678899999999999998888877543 3553211 11011 11112379999999999999999999999999998
Q ss_pred HHhC-CCCCCCcccccceec
Q 047498 179 ISRV-GVSPGEEVPFGKVVR 197 (566)
Q Consensus 179 M~~r-GcsPdDvVTYntLI~ 197 (566)
..++ +++- +...+..|++
T Consensus 78 fs~~Y~I~i-~~~~W~~Ll~ 96 (126)
T PF12921_consen 78 FSRKYPIPI-PKEFWRRLLE 96 (126)
T ss_pred HHHHcCCCC-CHHHHHHHHH
Confidence 8775 6444 5566666665
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.56 E-value=0.13 Score=50.54 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=61.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.++.-+-+.++++++.++|++..+......|...|..+-..+.+.|+.++|++.|++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------ 176 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD------------------ 176 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence 45566778888888888888876422234566677778888888899999998888887653
Q ss_pred C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 151 P-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 151 P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
| |....+.|+..|...|+.++|.++++...+..
T Consensus 177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 4 35556667777777777777777776666654
No 38
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.45 E-value=0.16 Score=39.31 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=43.5
Q ss_pred HcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 77 SGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 77 CKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
-+.|++++|+++|.+...... =|...+--+..++.+.|+.++|.++|+++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 468999999999999975321 25666778999999999999999999998865
No 39
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.39 E-value=0.26 Score=50.66 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=28.9
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
.+++.+.|.+--.....|+++||.+++.+-..+ .|+|
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~ 234 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPND 234 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCC
Confidence 478899999999999999999999999997654 4654
No 40
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.98 E-value=0.59 Score=50.61 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=90.4
Q ss_pred ccchhHHHH----HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc
Q 047498 65 NGVVEEELL----SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG 140 (566)
Q Consensus 65 ~~~~~~aLI----rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY 140 (566)
...++|-|+ +-+-..+++++|.++|+++.+. .|++. -.|...+...++-.+|++++++.....-
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p------- 231 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEVA--VLLARVYLLMNEEVEAIRLLNEALKENP------- 231 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCC-------
Confidence 344555554 4555589999999999999853 26644 4578888888999999999999885421
Q ss_pred ccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch----hhHHHHhhc
Q 047498 141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQ 209 (566)
Q Consensus 141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Q 209 (566)
-|....+.-.+-|.+.++.+.|+++.+++.. +.|++-.+|-.|..|+. .+.|+..+-
T Consensus 232 ----------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 232 ----------QDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 2555666667778899999999999999887 78876778888998886 246665533
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.97 E-value=0.57 Score=49.13 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=77.2
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV 153 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV 153 (566)
+.+.+.|++++|+++|++..+. ..-+...|..+-.+|.+.|+.++|+..|++.....- -+.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----------------~~~ 70 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-----------------SLA 70 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------CCH
Confidence 3466789999999999999852 223566788888899999999999999999886532 367
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
..|..+-..|.+.|+.++|++.|++..+ +.|++
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~ 103 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCC
Confidence 7788898999999999999999999987 45644
No 42
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.77 E-value=0.59 Score=52.77 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=23.7
Q ss_pred CCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 150 RPDVSV-YTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 150 ~PDVVT-YNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
.|+... +..+-..|.+.|+.++|++.|++..+.
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 465443 333556788899999999999887765
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.77 E-value=0.53 Score=51.96 Aligned_cols=56 Identities=13% Similarity=-0.058 Sum_probs=44.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 73 LSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
-..+...|++++|+..|++..+. .|+ ...|..+-..+...|+.++|...|++....
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34456799999999999998742 244 457888888899999999999999998754
No 44
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.76 E-value=0.18 Score=44.93 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=48.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS-----FDQG 135 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr-----G~~P 135 (566)
.++..+...|+.++|.++.+..... ...|...|-.+|.+|.+.|+..+|+++|+++++. |+.|
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 4455666799999999999999842 3468899999999999999999999999998754 6654
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.64 E-value=0.13 Score=50.58 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=40.1
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
.-+-+.|+.++|++.+++..+. .|| ....+.++..+...|+.++|.++++.....
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 4456788888888888888743 243 556778888888888888888877777655
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.28 E-value=0.19 Score=38.92 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=45.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 112 AIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 112 lCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
+.+.|+.++|+++|+++..... =|...+--|.+.|.+.|++++|.++|+++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNP-----------------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTT-----------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578999999999999987632 266677789999999999999999999887753
No 47
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.12 E-value=1.2 Score=44.62 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=71.6
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV 153 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV 153 (566)
..+...|++++|.+.+++..+. ...|...+..+-+.+...|+.++|..+|++.....-. .|+.
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------------~~~~ 184 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------------SSML 184 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------------Ccch
Confidence 4567799999999999999853 2234567888999999999999999999887643210 1443
Q ss_pred --HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 154 --SVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 154 --VTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
..|-.+-..+-..|+.++|.++|++....
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 34667888899999999999999998543
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.09 E-value=0.87 Score=51.48 Aligned_cols=57 Identities=7% Similarity=0.031 Sum_probs=28.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
+-.+-++|+.++|+.++....... .. +....-.+.-+.+..|+.++|.+.|+++...
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~ 105 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAV 105 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh
Confidence 334555666666666666665311 11 1112233334444566666666666666543
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=93.04 E-value=0.77 Score=50.59 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=60.5
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh-
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV- 153 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV- 153 (566)
-+...|++++|...|++..+. ..-+...|..+-..+...|+.++|+..|++..+.. |+-
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------------------P~~~ 406 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD------------------PTRA 406 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CCCh
Confidence 455789999999999998742 11235567888888999999999999999987653 321
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
..|..+...+...|+.++|++.+++..+.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 12223333455566677777766666544
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.97 E-value=1.1 Score=45.27 Aligned_cols=92 Identities=12% Similarity=-0.050 Sum_probs=75.4
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-Ch
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DV 153 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DV 153 (566)
.+.+.|+.++|...|.+..+. ..-+...|+.+=..+.+.|+.++|++.|++..+. .| +.
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------~P~~~ 132 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------------------DPTYN 132 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCH
Confidence 366789999999999998752 2235678999999999999999999999998854 25 46
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
.+|.-+-..|...|+.++|++.|+.-.+. .|+|
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~ 165 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQD--DPND 165 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 67788888889999999999999998874 5644
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=92.88 E-value=1 Score=49.66 Aligned_cols=92 Identities=20% Similarity=0.023 Sum_probs=69.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh-hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTV-DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDv-vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
.+-..+...|+.++|...+++..+.. |+. ..+..+...++..|+.++|...|++.....-
T Consensus 377 ~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~---------------- 437 (553)
T PRK12370 377 YYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL---------------- 437 (553)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc----------------
Confidence 34456778999999999999997532 432 2344455568889999999999999875432
Q ss_pred CCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 150 RPD-VSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 150 ~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
|| ...|..|-..|...|+.++|...++++...
T Consensus 438 -p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 438 -QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred -ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 53 334777888888999999999999987554
No 52
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.80 E-value=2.5 Score=37.67 Aligned_cols=94 Identities=24% Similarity=0.358 Sum_probs=64.3
Q ss_pred HcCCCHHHHHHHHHHHhhcCCC--CcChh------------------hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 047498 77 SGAKDASEVLEIVAESSKRSGG--VLTVD------------------ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGL 136 (566)
Q Consensus 77 CKAGrlDEAleLL~EM~er~Gg--~PDvv------------------TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pd 136 (566)
-.+|+.+++.+.+.+.....+| .++.. ....++..+...|+.++|.++.+.+...-.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--- 93 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP--- 93 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST---
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC---
Confidence 4577888898888888644332 33422 224455666779999999999999886532
Q ss_pred CCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCC
Q 047498 137 SENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR-----VGVSPG 187 (566)
Q Consensus 137 vvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~-----rGcsPd 187 (566)
-|--.|-.||..|.+.|+..+|++.|+++.+ -|+.|+
T Consensus 94 --------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 94 --------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp --------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred --------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 5788999999999999999999999988754 489994
No 53
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.39 E-value=0.93 Score=33.29 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
.|..+...+.+.|+.++|+.+|++..+..- .+...+..+-..+...|+.++|.+.|++....+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-----------------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356677888999999999999999876532 334678888889999999999999999988764
No 54
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.29 E-value=1.4 Score=48.83 Aligned_cols=104 Identities=15% Similarity=-0.040 Sum_probs=68.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc--cccc------
Q 047498 73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG--TLVD------ 144 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY--aLi~------ 144 (566)
-..+...|++++|...|++..+. ..-+...|..+-..+.+.|+.++|++.|++.... .|+.... .+..
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCC
Confidence 34566789999999999988742 1234567888888999999999999999987754 3322111 0000
Q ss_pred -----------ccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 145 -----------RWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 145 -----------~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
..+ ..| +...|+-+-..|.+.|++++|++.|+.-..
T Consensus 448 ~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 448 SIASSMATFRRCKK-NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred CHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 001 134 355667777777777777777777777654
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.13 E-value=1.4 Score=46.44 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-c-----cc
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-T-----LV 143 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-a-----Li 143 (566)
..+.+.+-+.|+.++|.+++.+..+. .||. --.++.+.++.|+.++|++..++..++. ||.... . ..
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKR---QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence 35667777778888887777777631 2332 2335666667777777777777776542 333211 0 00
Q ss_pred ccccc------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 144 DRWKW------------SRPDVSVYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 144 ~~~rw------------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
..-.| ..||..+|-.|-..+.+.|+.++|.+++++=
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 10011 2799999999999999999999999988753
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.82 E-value=1.4 Score=46.42 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=65.9
Q ss_pred hHHHHHHHHc--CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccc--c--
Q 047498 69 EEELLSRVSG--AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGT--L-- 142 (566)
Q Consensus 69 ~~aLIrGLCK--AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYa--L-- 142 (566)
+..+.+|+.. .|++++|.+++....+. ...| ...|-..-....+.|+.+.|...|.+|.+. .||...+. .
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a 160 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADH-AEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc-ccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 3456666666 59999999888877542 1122 233444445558999999999999998753 22221110 0
Q ss_pred -----cccc--------cc--CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047498 143 -----VDRW--------KW--SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVS 185 (566)
Q Consensus 143 -----i~~~--------rw--~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcs 185 (566)
...+ +| ..| |...+..+...|++.|++++|.+++..+.+.+..
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 0000 11 133 3455666666666667777777666666666544
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.72 E-value=0.93 Score=54.20 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHH
Q 047498 79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTS 158 (566)
Q Consensus 79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNT 158 (566)
.|+.++|...+++..+ ..|+...|..+-..+.+.|+.++|...|++...... -|...++.
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----------------d~~~a~~n 648 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP-----------------NNSNYQAA 648 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHH
Confidence 3666666666666653 124555666666666666666666666666554421 24556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccccccee
Q 047498 159 LVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVV 196 (566)
Q Consensus 159 LIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI 196 (566)
|-..|++.|+.++|+.+|++..+ ..|++.-.+..+=
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA 684 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLA 684 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 66677777777777777777666 3565443443333
No 58
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.48 E-value=2 Score=47.70 Aligned_cols=113 Identities=9% Similarity=0.005 Sum_probs=75.2
Q ss_pred ccccccccccccccccccc--cccchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCCh
Q 047498 45 AKKATRLRGFRIEASLSES--ENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNT 118 (566)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~--~~~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrV 118 (566)
|..++.+++..+..+.++. .+.+.-+.+=..|.+.|++++|+..|++-.+. .||. .+|+-+=++|.+.|+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~ 128 (453)
T PLN03098 52 FGRSSSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEG 128 (453)
T ss_pred eccccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCH
Confidence 3344444444444433333 22223356666789999999999999997642 2553 4699999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccccCCCChH------hHHHHHHHHHhcCC
Q 047498 119 DLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS------VYTSLVQSLAASLK 168 (566)
Q Consensus 119 DeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV------TYNTLIdGLCKsGR 168 (566)
++|+..|++....+- . -|..+ ...||.. .|..|+.++.+.|.
T Consensus 129 dEAla~LrrALelsn--~--~f~~i----~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 129 KKAADCLRTALRDYN--L--KFSTI----LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHHHHHHHHhcc--h--hHHHH----HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 999999999876421 0 11100 0135543 78889999999996
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.33 E-value=3 Score=40.32 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=71.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHH-HhcCC--hhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAA-IDRGN--TDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~Gl-CKaGr--VDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
-+.+-+.|+.++|.+.|++..... .-|...|..+-..+ ...|+ .++|.++|++-.+...
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP---------------- 141 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA---------------- 141 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC----------------
Confidence 345667899999999998887421 12555666666664 56676 4899999998887643
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
-|...+..|=..+.+.|+.++|+..++++.+. .+|
T Consensus 142 -~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~ 176 (198)
T PRK10370 142 -NEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSP 176 (198)
T ss_pred -CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Confidence 37788899999999999999999999999775 344
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=91.32 E-value=3.7 Score=37.97 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
.+-..+.+.|+.++|.+.|++........++ ...|..+-..+.+.|+.++|.+.|++......
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------- 103 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---------------- 103 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 3444567799999999999998742111222 45788899999999999999999999876421
Q ss_pred CCChHhHHHHHHHHHhcCC--------------HHHHHHHHHHHHhCCCCCC
Q 047498 150 RPDVSVYTSLVQSLAASLK--------------VSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGR--------------VdEAlkLLeEM~~rGcsPd 187 (566)
-+...|..+-..+.+.|+ .++|.+.+++..+ ..|+
T Consensus 104 -~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~ 152 (172)
T PRK02603 104 -KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPN 152 (172)
T ss_pred -ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCch
Confidence 245556666666777776 4667777766655 3464
No 61
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=91.00 E-value=0.97 Score=41.55 Aligned_cols=69 Identities=9% Similarity=-0.062 Sum_probs=56.8
Q ss_pred ccchhHHHHHHHHcCCCHHHHHHHHHHHh--------------hcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 65 NGVVEEELLSRVSGAKDASEVLEIVAESS--------------KRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 65 ~~~~~~aLIrGLCKAGrlDEAleLL~EM~--------------er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
++.++.++|-++++.|+++....+++..- ......||..+-.+++.+||..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35688999999999999999999997651 0011378889999999999999999999999999764
Q ss_pred c-CC
Q 047498 131 S-FD 133 (566)
Q Consensus 131 r-G~ 133 (566)
. ++
T Consensus 81 ~Y~I 84 (126)
T PF12921_consen 81 KYPI 84 (126)
T ss_pred HcCC
Confidence 4 44
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.95 E-value=2.5 Score=40.11 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
.+...+-+.|++++|...|++........|. ..++..+-..+.+.|+.++|...|+++.+..-.
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------------- 102 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN--------------- 102 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------
Confidence 3445677899999999999998742211121 246677889999999999999999999876432
Q ss_pred CCChHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 047498 150 RPDVSVYTSLVQSLAAS----------LKVSDALRLIDDISRV 182 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKs----------GRVdEAlkLLeEM~~r 182 (566)
.|++ -|+....|.|.. |+.++|.+.|+++.+.
T Consensus 103 ~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 HPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 1222 234444555554 6789999999999876
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=90.88 E-value=2 Score=51.45 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=62.8
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498 69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW 148 (566)
Q Consensus 69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw 148 (566)
+..|-+-+.+.|+.++|++.|++..+. ..-|...+..+...+.+.|+.++|.+.|+.....
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~----------------- 666 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT----------------- 666 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----------------
Confidence 344445556666666666666666532 1124455666666666677777777766654432
Q ss_pred CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 149 SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 149 ~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
.| |..++..+-..+-+.|+.++|.++|++.....
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 23 45567777788889999999999999988754
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=90.36 E-value=0.9 Score=53.91 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=63.2
Q ss_pred CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498 99 VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDD 178 (566)
Q Consensus 99 ~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE 178 (566)
.||..+|.+++++..-+|++|.|..++++|+++|+.-+. --|=.|+-| .+.+.-+..++.-
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~----------------HyFwpLl~g---~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA----------------HYFWPLLLG---INAAQVFEFVLRG 261 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc----------------ccchhhhhc---CccchHHHHHHHH
Confidence 689999999999999999999999999999999984222 222234444 7888888999999
Q ss_pred HHhCCCCCCCccccccee
Q 047498 179 ISRVGVSPGEEVPFGKVV 196 (566)
Q Consensus 179 M~~rGcsPdDvVTYntLI 196 (566)
|...|+.| +.-||..-+
T Consensus 262 mqe~gv~p-~seT~adyv 278 (1088)
T KOG4318|consen 262 MQEKGVQP-GSETQADYV 278 (1088)
T ss_pred HHHhcCCC-CcchhHHHH
Confidence 99999999 567887665
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=90.05 E-value=2.9 Score=50.21 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=76.1
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCC---------cc-ccc
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQG-LSE---------NG-TLV 143 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P-dvv---------TY-aLi 143 (566)
.+...|++++|...|++..+. ..-|...+..|-..+.+.|+.++|...|++..+..-.. +.. .| ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 355689999999999888742 11256778888889999999999999998876543221 100 11 000
Q ss_pred -cc---c----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498 144 -DR---W----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE 189 (566)
Q Consensus 144 -~~---~----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv 189 (566)
.+ . .....|...|..|-+.+.+.|+.++|++.|++..+. .|++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~ 419 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNT 419 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 00 0 011236677888999999999999999999999875 46443
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.05 E-value=1.1 Score=34.50 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 109 INAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 109 I~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
-..+.+.|+.++|.+.|++..+.. | |.-.+..+=..+-+.|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356889999999999999999764 4 5666777888899999999999999999763
No 67
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.02 E-value=0.66 Score=36.98 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
.+|+.|=..|++.|+.++|+..|++.... .+ ...--.|+ +.+|+-|=..+.+.|+.++|++++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~----------~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EE----------QLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH----------HTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----------HHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999997754 21 00001355 7899999999999999999999998643
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.91 E-value=1.2 Score=34.37 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
..+.+.|++++|.+.|++..+. . | +...+..+=..+.+.|+.++|..+|++....
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--D-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578899999999999999853 2 4 5566788888999999999999999998754
No 69
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.03 E-value=4 Score=46.99 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
..+-..+-+.|++++|.+++++..+.. ..+...+..+...+.+.|+.++|+..+++......
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P---------------- 114 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP---------------- 114 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------
Confidence 455566788999999999999976421 23455667888889999999999999999886632
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
.|.. |..|-..+.+.|+.++|+..+++..+. .|++
T Consensus 115 -~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~ 149 (765)
T PRK10049 115 -DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQT 149 (765)
T ss_pred -CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 3444 888888999999999999999999985 5644
No 70
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=88.29 E-value=4 Score=36.78 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=62.0
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
+.+...|++++|...|+...+. . ||. ...--|-..+...|+.++|+..++......
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~----------------- 115 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA----------------- 115 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc-----------------
Confidence 5677789999999999999853 2 332 233446777888999999999997643222
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDD 178 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeE 178 (566)
.....+..+=+-|.+.|+.++|+..|+.
T Consensus 116 -~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 116 -FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred -hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2334566777889999999999999874
No 71
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=88.15 E-value=3.3 Score=34.16 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=52.2
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
+|-.+...+.+.|+.++|.+.|.++....-. .| ....+..+-..+.+.|+.++|+++|++....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK---------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 5677888899999999999999999865310 01 1345667899999999999999999999875
Q ss_pred C
Q 047498 183 G 183 (566)
Q Consensus 183 G 183 (566)
.
T Consensus 69 ~ 69 (119)
T TIGR02795 69 Y 69 (119)
T ss_pred C
Confidence 3
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.88 E-value=4.2 Score=46.79 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=77.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.+...+-..|+.++|.++|+++... ..-+...+..+...+-+.|+.++|++.+++.... .
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------------------~ 423 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL------------------E 423 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------C
Confidence 4555777899999999999999742 2235667899999999999999999999988754 3
Q ss_pred CC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 151 PD-VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 151 PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
|| .-.+-.+...+-+.|++++|.++++++.+ ..|++
T Consensus 424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~ 460 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQD 460 (765)
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCC
Confidence 54 45566666688899999999999999998 45643
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=87.68 E-value=5.2 Score=48.11 Aligned_cols=93 Identities=5% Similarity=-0.069 Sum_probs=76.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP 151 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P 151 (566)
+-..+.+.|+.++|.+.|++..+. ..-+...++.+-..+++.|+.++|+.+|++-.+... =
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----------------~ 675 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-----------------D 675 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------C
Confidence 345678899999999999999852 222455678888899999999999999999876532 2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
|...+..|=..+.+.|+.++|...|++-...-
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999998643
No 74
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.49 E-value=10 Score=38.86 Aligned_cols=91 Identities=10% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP 151 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P 151 (566)
+-+.|++++|+..|+...... |+. ..+--|-..|.+.|+.++|+..|+.+...-.. . . -.|
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s---------~-~~~ 217 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--S---------P-KAA 217 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C---------c-chh
Confidence 355799999999999998532 443 35667778899999999999999999865321 0 0 023
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
|..-+ +...+-+.|+.++|++.|++.++.-
T Consensus 218 dAl~k--lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 218 DAMFK--VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHH--HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33222 2334557899999999999998753
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=87.15 E-value=4.9 Score=34.65 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=58.2
Q ss_pred ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
+......+-..+.+.|+.++|.+.|+.....+- .|...|..+-..+.+.|+.++|.+.|+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----------------YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999999999887543 467778888899999999999999999887
Q ss_pred hCCCCCCCcccc
Q 047498 181 RVGVSPGEEVPF 192 (566)
Q Consensus 181 ~rGcsPdDvVTY 192 (566)
+.+ |++..+|
T Consensus 79 ~~~--p~~~~~~ 88 (135)
T TIGR02552 79 ALD--PDDPRPY 88 (135)
T ss_pred hcC--CCChHHH
Confidence 764 5333333
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=87.15 E-value=7.4 Score=41.17 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=63.5
Q ss_pred HHHHHHHc--CCCHHHHHHHHHHHhhcCCCCcChhh-hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC---Ccccc--
Q 047498 71 ELLSRVSG--AKDASEVLEIVAESSKRSGGVLTVDE-CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLS---ENGTL-- 142 (566)
Q Consensus 71 aLIrGLCK--AGrlDEAleLL~EM~er~Gg~PDvvT-YNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv---vTYaL-- 142 (566)
.+.+|+-. .|++++|.+.+.+..+. .|+... |=..-..+.+.|+.+.|.+.|.+..+.--.++. .+++-
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 34444443 67777777777666531 233222 222234456667777777777776543211111 01100
Q ss_pred --cccc--------cc--CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 143 --VDRW--------KW--SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 143 --i~~~--------rw--~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
...+ +| ..| |...+-.+..-+++.|++++|.+++....+.|..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 0000 11 135 45567788888899999999999999888887654
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=86.57 E-value=5.7 Score=36.29 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498 105 CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGV 184 (566)
Q Consensus 105 YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc 184 (566)
+..+-..+.+.|+.++|...|+....... .|...|..+-..+-+.|++++|+..|+.... .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----------------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l 87 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-----------------WSWRAHIALAGTWMMLKEYTTAINFYGHALM--L 87 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 44567788999999999999999876532 5788899999999999999999999999997 5
Q ss_pred CCCCcccccceeccch
Q 047498 185 SPGEEVPFGKVVRCPT 200 (566)
Q Consensus 185 sPdDvVTYntLI~C~t 200 (566)
.|++.-.+..+-.|+.
T Consensus 88 ~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 88 DASHPEPVYQTGVCLK 103 (144)
T ss_pred CCCCcHHHHHHHHHHH
Confidence 6877666666555554
No 78
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.19 E-value=6.5 Score=37.52 Aligned_cols=91 Identities=13% Similarity=0.159 Sum_probs=68.2
Q ss_pred HHcCCCHHHHHHHHHHHhhcCC-CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498 76 VSGAKDASEVLEIVAESSKRSG-GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS 154 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~G-g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV 154 (566)
.-+.|++++|.+.|.....+.- +.-..-+-=-||.++.+.|+.++|+..+++..+.-.. +|+ +
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---------------hp~-v 83 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------------HPN-V 83 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CCC-c
Confidence 3467999999999999986522 2223344567999999999999999999998866443 566 5
Q ss_pred hHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC
Q 047498 155 VYTSLVQSLAASLK-----------------VSDALRLIDDISRV 182 (566)
Q Consensus 155 TYNTLIdGLCKsGR-----------------VdEAlkLLeEM~~r 182 (566)
-|--...|||--.. +.+|+.-|++.+++
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 68888888887665 55677777766654
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.06 E-value=3.7 Score=32.09 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=48.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498 110 NAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGV 184 (566)
Q Consensus 110 ~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc 184 (566)
..+.+.++.++|+++++.+..... -|...|...=..+.+.|++++|++.|+...+.+-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-----------------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-----------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457899999999999999987643 3666677777889999999999999999987543
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.46 E-value=7.3 Score=45.23 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=78.7
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhh-hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDE-CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvT-YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
+-.-..|+.|+|..+++...+ ..||-+. .-.+...+-+.+++++|+..++.-..... =+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-----------------~~ 153 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-----------------SS 153 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-----------------CC
Confidence 455668999999999999875 3466544 47788899999999999999999887643 24
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---cccccceec
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE---EVPFGKVVR 197 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD---vVTYntLI~ 197 (566)
...++.+=..|-+.|+.++|..+|++... ..|++ .+.|+.+..
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHH
Confidence 55677777789999999999999999998 44432 466776665
No 81
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.23 E-value=15 Score=33.61 Aligned_cols=91 Identities=10% Similarity=-0.084 Sum_probs=62.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS 149 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~ 149 (566)
.+...+-..|++++|+..|++........+ ...+|+.+=..+-+.|+.++|+..|++....-.
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---------------- 103 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP---------------- 103 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 344445568999999999999863211112 234788888899999999999999988775421
Q ss_pred CCChHhHHHHHHHHH-------hcCCHHHHHHHHHH
Q 047498 150 RPDVSVYTSLVQSLA-------ASLKVSDALRLIDD 178 (566)
Q Consensus 150 ~PDVVTYNTLIdGLC-------KsGRVdEAlkLLeE 178 (566)
-+..+++.+-.-+- +.|+.++|...+++
T Consensus 104 -~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 104 -FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred -CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 22344555555555 78888877776654
No 82
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=84.30 E-value=8.1 Score=40.89 Aligned_cols=107 Identities=7% Similarity=0.012 Sum_probs=64.6
Q ss_pred chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhh---hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC--ccc
Q 047498 67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDE---CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE--NGT 141 (566)
Q Consensus 67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvT---YNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv--TYa 141 (566)
.+.-.+...+-+.|+.++|.+++++..+. .||... .....-+.++.++.+.+.+.++.-.+. .||.. .+.
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll 338 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCIN 338 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHH
Confidence 45556677777888888888888877642 244432 233334445566777777777665533 23222 110
Q ss_pred ccccc------cc--------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498 142 LVDRW------KW--------------SRPDVSVYTSLVQSLAASLKVSDALRLIDD 178 (566)
Q Consensus 142 Li~~~------rw--------------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE 178 (566)
.--+| .| ..||..+|..|-.-+-+.|+-++|.+++++
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00000 00 158888888888888888888888888775
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=83.54 E-value=8.2 Score=38.65 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=40.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 109 INAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 109 I~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
-..+...|+.++|...|++..... ..|...|..+-+.|...|++++|..++++....
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-----------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 344555666666666666665442 245677888999999999999999999887654
No 84
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=83.07 E-value=3.9 Score=43.91 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=64.6
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCCh----------------hHHHHHHHHHHhcCCCCCC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNT----------------DLALSIFYAMRSSFDQGLS 137 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrV----------------DeAlsLF~EM~srG~~Pdv 137 (566)
+..-+.+.+|=-+..|+.|.+ .|..-|..+|+.||+-|=|..-. +=|+.|+++|...|+
T Consensus 80 ~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGV---- 154 (406)
T KOG3941|consen 80 KSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGV---- 154 (406)
T ss_pred hhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCC----
Confidence 344567888888888999997 88888999999999998876532 347899999999998
Q ss_pred CccccccccccCCCChHhHHHHHHHHHhcCC
Q 047498 138 ENGTLVDRWKWSRPDVSVYTSLVQSLAASLK 168 (566)
Q Consensus 138 vTYaLi~~~rw~~PDVVTYNTLIdGLCKsGR 168 (566)
+||--+-.+||+.|.+.+-
T Consensus 155 ------------mPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 155 ------------MPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------CCchHHHHHHHHHhccccc
Confidence 6999999999999966553
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=83.02 E-value=8.4 Score=45.57 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=57.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHH---HHHHhcCChhHHHHHHHHHHhcCCC-CCCCcc-ccccc
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLII---NAAIDRGNTDLALSIFYAMRSSFDQ-GLSENG-TLVDR 145 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI---~GlCKaGrVDeAlsLF~EM~srG~~-PdvvTY-aLi~~ 145 (566)
.++.-+...|+.++|+..+++... |+...|..+. ..+-..|+.++|+++|+++.+.... |++... .+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~-----p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS-----SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence 445555566777777777777652 2222233332 3444447777777777777654321 111000 00000
Q ss_pred --------c------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 146 --------W------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 146 --------~------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
+ .-..|+..+|-.++.-+-..++-.+|++.+++|.+.. |++
T Consensus 148 ~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n 202 (822)
T PRK14574 148 DAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTS 202 (822)
T ss_pred hcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCC
Confidence 0 0025777777444444444556656888888888764 643
No 86
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=82.92 E-value=5.1 Score=40.75 Aligned_cols=107 Identities=10% Similarity=0.104 Sum_probs=72.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP 151 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P 151 (566)
+++-+-+.+..+.|..+|.+-.+...+..++...+++|-- +-.++.+.|.++|+...+..- -
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~f~-----------------~ 68 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKKFP-----------------S 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHHHT-----------------T
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC-----------------C
Confidence 4555555677999999999998544446677776777733 334666779999999876532 4
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cccccceec
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE--EVPFGKVVR 197 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD--vVTYntLI~ 197 (566)
|..-+..=|+-|.+.|+.+.|+.+|++-... +.+.. ..-|...|+
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~ 115 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIE 115 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHH
Confidence 5555677789999999999999999999877 54421 134555555
No 87
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=82.44 E-value=10 Score=41.41 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=74.7
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK 147 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r 147 (566)
..-.|.+-+-..++-.+|++++.+.... ..-|....+.-.+.|.+.|+.+.|+++.+++...
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l---------------- 263 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL---------------- 263 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Confidence 4445666666788899999999999842 2236666677778899999999999999999865
Q ss_pred cCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 148 WSRPDVS-VYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 148 w~~PDVV-TYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
.|+-+ +|..|.+.|-+.|++++|+-.+..|
T Consensus 264 --sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 264 --SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred --CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 46544 9999999999999999999998866
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.14 E-value=13 Score=43.23 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=73.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.+...|.+.+++|+|+..+++... ...=+...++.+=.++-+.|+.++|..+|++.... .
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------------------~ 184 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ------------------H 184 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------------------C
Confidence 557889999999999999999984 22223455677778899999999999999999873 2
Q ss_pred CC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 151 PD-VSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 151 PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
|| .-++..+=+.|-+.|+.++|...|+.-..
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 67777888888899999999998887754
No 89
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.08 E-value=25 Score=33.51 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=16.1
Q ss_pred hHHhHHHHHhHhhhhchHHHHHhh
Q 047498 534 ELENLEEKWRLQAEANDEAERLIN 557 (566)
Q Consensus 534 e~~~l~~~wr~qaea~de~erll~ 557 (566)
+++.+++.|+-+.|..-+-++++.
T Consensus 166 ~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 166 QLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345557777777777777776653
No 90
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=81.75 E-value=50 Score=32.04 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=36.4
Q ss_pred HHHHHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHhhh
Q 047498 449 MLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISS 501 (566)
Q Consensus 449 ~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~ 501 (566)
.+.+|++.=++|.. .=...=+|+.+||.=+..-|-+=.+|++.|+.+.+
T Consensus 102 ~~~~~~~~~~~I~~----~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~ 150 (199)
T PF10112_consen 102 KVSRIEKIARRIFK----YVEKDPERLTQARKFLYYYLPTAVKLLEKYAELES 150 (199)
T ss_pred HHHHHHHHHHHHHH----HHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34455555555543 22344478899999999999999999999999965
No 91
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.13 E-value=3.2 Score=44.92 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=68.0
Q ss_pred cccccccccchhHHHHH-HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC-C--
Q 047498 58 ASLSESENGVVEEELLS-RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF-D-- 133 (566)
Q Consensus 58 ~~~~~~~~~~~~~aLIr-GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG-~-- 133 (566)
.|.+-+.++|=|.---+ .+...|+ +.+.-.. .|+..++.|-..+|+-.-...++|.|..++.+.+..- +
T Consensus 26 sS~fs~e~~w~~r~~~~~kla~~g~------~~~kkF~-~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~ 98 (418)
T KOG4570|consen 26 SSAFSDEHKWEAREKEHYKLADLGS------LMDKKFE-RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWY 98 (418)
T ss_pred HHHhhhhhhhhHHHHHHHHHhcccc------cchhhhh-cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhh
Confidence 34444566666654444 3444444 1111122 3445666667777777777778888888887776431 1
Q ss_pred CCCCCcccccccc-----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 134 QGLSENGTLVDRW-----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 134 ~PdvvTYaLi~~~-----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
.|+.-.|+.+..+ ...-||-.|++.|||.|-|.+...+|.++.-+|..+
T Consensus 99 ~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 99 LRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1222222111110 012588888888888888888888888887777655
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=80.49 E-value=12 Score=37.95 Aligned_cols=101 Identities=11% Similarity=-0.036 Sum_probs=75.7
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
-+...+..+.++.-|.++..+....|+ ...|.-+=..+.+.|+.++|+..|++..+... -+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-----------------~~ 97 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-----------------DM 97 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----------------CC
Confidence 355556788888888888743222222 23466666778999999999999999876532 35
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccc
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGK 194 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYnt 194 (566)
...|+.+=.-+.+.|+.++|...|+...+ +.|++...|..
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~ 137 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 78899999999999999999999999986 56865555543
No 93
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=80.24 E-value=8.4 Score=29.82 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 047498 102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASL-KVSDALRLIDDIS 180 (566)
Q Consensus 102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsG-RVdEAlkLLeEM~ 180 (566)
...|..+=..+++.|+.++|+..|++-.+... -|...|.-+=..+.+.| +.++|++.++.-.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34566666778888888888888888765421 35667777777778888 6888888887654
Q ss_pred h
Q 047498 181 R 181 (566)
Q Consensus 181 ~ 181 (566)
+
T Consensus 66 ~ 66 (69)
T PF13414_consen 66 K 66 (69)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=79.90 E-value=5.1 Score=31.88 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcC-hhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKR---SGG-VLT-VDECCLIINAAIDRGNTDLALSIFYAMR 129 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er---~Gg-~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~ 129 (566)
.+=.-+...|++++|++.|++..+. .|. .|+ ..+|+-|=..+.+.|+.++|++.|++-.
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678899999999999887521 222 354 6788999999999999999999998743
No 95
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=79.85 E-value=4.2 Score=35.45 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=36.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhhccc
Q 047498 421 IRQQLLSQYDLLQSRIKDLKEAAEK-------EVWMLARMCQLENKIYAVGEP 466 (566)
Q Consensus 421 ~~qqll~qy~~l~~r~~~l~~~~~~-------~v~~lar~~ql~nk~~avg~~ 466 (566)
+-|++|.+|..|...++.|-+.-.+ -..+|..|.+||-||.-|++.
T Consensus 4 LEq~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~glV~TL 56 (78)
T PF08656_consen 4 LEQEVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIGLVYTL 56 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999998888775543322 268999999999999999984
No 96
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=78.76 E-value=8.4 Score=38.01 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=52.1
Q ss_pred cccccccCCCcccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhHhHHHHHHHHHH
Q 047498 401 NNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVRE 480 (566)
Q Consensus 401 n~~~lp~l~qlp~~~v~~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~ 480 (566)
+.+-=|.++++|+|...-...-..|+.--..-..++.+-+..+|++- |+.|+++ |..|.-|-..|.+
T Consensus 98 ~~~~p~~i~~~~~~~~qhqd~Errl~~m~~~r~l~l~q~s~~vEqq~--------lqqel~~-----~e~RlarCr~Ale 164 (175)
T COG3923 98 WDPAPPHIARLYRKLAQHQDYERRLLAMVQDRRLQLAQQSDLVEQQK--------LQQELEA-----YEQRLARCRHALE 164 (175)
T ss_pred cCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHH-----HHHHHHHHHHHHH
Confidence 44444999999998776655555444333333334444444455543 7778875 9999999999999
Q ss_pred hhhhhhhhc
Q 047498 481 GLQNSLRGR 489 (566)
Q Consensus 481 ~l~~~l~~~ 489 (566)
.||++|..+
T Consensus 165 kiE~~l~~~ 173 (175)
T COG3923 165 KIENRLARK 173 (175)
T ss_pred HHHHHHHhh
Confidence 999998764
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=78.33 E-value=20 Score=34.13 Aligned_cols=108 Identities=9% Similarity=0.028 Sum_probs=64.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCCCc-c
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDR----------GNTDLALSIFYAMRSSFDQGLSEN-G 140 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKa----------GrVDeAlsLF~EM~srG~~PdvvT-Y 140 (566)
+-..+-+.|++++|.+.++++.+.....++. .+.....|.|.. |+.++|++.|+++..... +..- +
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~ 152 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP--NSEYAP 152 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC--CChhHH
Confidence 3456778999999999999997532222222 233344444443 779999999999986532 1110 0
Q ss_pred ccccccccCCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 141 TLVDRWKWSRPDVSV-YTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 141 aLi~~~rw~~PDVVT-YNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
.......+...+... +-.+-+.+.+.|+.++|+..+++..+.
T Consensus 153 ~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 153 DAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 000000000000001 113456688999999999999998876
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=78.25 E-value=28 Score=36.37 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=71.4
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK 147 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r 147 (566)
+...++.-..+.|+..+|...|++-.. .-.+|-.+||-+=-+|-+.|+.++|..-|.+-.+-...
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------------- 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN------------- 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-------------
Confidence 666778888889999999999999973 34678889999999999999999999988777654331
Q ss_pred cCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047498 148 WSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVS 185 (566)
Q Consensus 148 w~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcs 185 (566)
+-..+|=|-=.|-=.|+.++|..++.+-...+-.
T Consensus 167 ----~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 167 ----EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred ----CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 2223333444444556777777777666655443
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=78.18 E-value=21 Score=40.17 Aligned_cols=101 Identities=14% Similarity=-0.043 Sum_probs=62.9
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhh-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC----Ccc--cccccc--
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDEC-CLIINAAIDRGNTDLALSIFYAMRSSFDQGLS----ENG--TLVDRW-- 146 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTY-NsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv----vTY--aLi~~~-- 146 (566)
.-..|..|+|...|++... ..||-.-| ....+=+.+.|++++|.+.|+++... .|+. .+| +++.+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3456777777777777752 23555555 34455667777777777777777654 2332 122 111111
Q ss_pred -----------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 147 -----------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 147 -----------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
+--.-|...|+.|=..+.+.|+..+|..-..|+-.
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 11134788899999999988888888877776643
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=77.74 E-value=26 Score=32.09 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=60.0
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcCh---hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTV---DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDv---vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
+-..|+.++|+.++++-.+ .|. .+. -.+--+=..+-..|++|+|+.+|++-....-. . .| .+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~-~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~--~---------~~--~~ 75 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALA-AGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD--D---------EL--NA 75 (120)
T ss_pred HHhcCCHHHHHHHHHHHHH-cCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--c---------cc--cH
Confidence 3458999999999999985 332 232 23344556788899999999999998765210 0 00 11
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
...+. +--.|-..||.++|++.+-.-.
T Consensus 76 ~l~~f-~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 76 ALRVF-LALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHH-HHHHHHHCCCHHHHHHHHHHHH
Confidence 33332 3348888999999999886543
No 101
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=77.51 E-value=9.7 Score=42.50 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=56.8
Q ss_pred cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh----HhHHHHHHHHHhcCCHHHHHHH
Q 047498 100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV----SVYTSLVQSLAASLKVSDALRL 175 (566)
Q Consensus 100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV----VTYNTLIdGLCKsGRVdEAlkL 175 (566)
.+...|+-+=.+|.+.|++++|+..|++-... .||- ++|.-+-..|.+.|+.++|+..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL------------------NPNPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46678999999999999999999999986644 3663 5799999999999999999999
Q ss_pred HHHHHhC
Q 047498 176 IDDISRV 182 (566)
Q Consensus 176 LeEM~~r 182 (566)
|++-.+.
T Consensus 135 LrrALel 141 (453)
T PLN03098 135 LRTALRD 141 (453)
T ss_pred HHHHHHh
Confidence 9999885
No 102
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=77.26 E-value=18 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHhcCCcccccCCCchhHHHHHHHHHHHhhhhcccccccccCCC
Q 047498 367 VLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQ 410 (566)
Q Consensus 367 ~la~~daas~~idp~lp~~~~~~a~a~~~~g~~~n~~~lp~l~q 410 (566)
+|+.|+ ++||..++++.. ++..+.+=..++-|+.|.+..
T Consensus 7 ~~~~~~----~~~~~~~~~~~~-~i~Flil~~lL~~~l~kpi~~ 45 (175)
T PRK14472 7 ILLSGG----LLSPNPGLIFWT-AVTFVIVLLILKKIAWGPILS 45 (175)
T ss_pred hhhcCC----ccCCCHHHHHHH-HHHHHHHHHHHHHHhHHHHHH
Confidence 455554 799997776654 445555555578888877654
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.77 E-value=20 Score=37.29 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=50.7
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV 155 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT 155 (566)
||..|++++|...|++-.+.+.-.--..||--+--|..|.|+.+.|...|+.-...-- -+--+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-----------------~~~~~ 175 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-----------------QFPPA 175 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-----------------CCChH
Confidence 5666666666666666554221100112444444455566666666666655443311 12233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498 156 YTSLVQSLAASLKVSDALRLIDDISRVGV 184 (566)
Q Consensus 156 YNTLIdGLCKsGRVdEAlkLLeEM~~rGc 184 (566)
--.+-+-.-+.|+.-+|+.+++..-.+|-
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 44566667777888888888887777665
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=76.24 E-value=21 Score=40.26 Aligned_cols=102 Identities=15% Similarity=0.047 Sum_probs=73.3
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhc---CCC--CcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccc
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKR---SGG--VLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGT 141 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er---~Gg--~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYa 141 (566)
.-+.|=.-|-+.|+.+||.+++++...+ .++ .+. -..+|-|=..+-..++..+|..+|.+=..-.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~--------- 439 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM--------- 439 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH---------
Confidence 3456667788999999999999988532 122 121 1234666667888999999999998744211
Q ss_pred cccccccCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 142 LVDRWKWSRPDV-SVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 142 Li~~~rw~~PDV-VTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
..++...||+ .||--|..-|-+.||.++|.++.+...
T Consensus 440 --~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 --KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1112235665 689999999999999999999998776
No 105
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=76.17 E-value=7 Score=46.88 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc--ccccccc
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG--TLVDRWK 147 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY--aLi~~~r 147 (566)
.++++.-..+|++|-|..++.+|.+ .|...+..-|-.||.| .|.+.-+..+..-|...|+.||.-|| .++..+.
T Consensus 208 ~a~l~~alaag~~d~Ak~ll~emke-~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 208 HAVLKRALAAGDVDGAKNLLYEMKE-KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHH-cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 4667777889999999999999998 5788888888999988 99999999999999999999999999 4455442
Q ss_pred -c------C-CCC-----hHhHHHHHHHHHhcCCHHH
Q 047498 148 -W------S-RPD-----VSVYTSLVQSLAASLKVSD 171 (566)
Q Consensus 148 -w------~-~PD-----VVTYNTLIdGLCKsGRVdE 171 (566)
| + .|+ .-.|..+.+|+-.+.+++.
T Consensus 284 N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 284 NGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred chhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 2 1 222 3345666666444444443
No 106
>PRK14574 hmsH outer membrane protein; Provisional
Probab=76.14 E-value=17 Score=43.08 Aligned_cols=107 Identities=13% Similarity=0.205 Sum_probs=73.8
Q ss_pred cchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh--hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cc
Q 047498 66 GVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTV--DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TL 142 (566)
Q Consensus 66 ~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDv--vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aL 142 (566)
...+..+| ..+.|+.++|++.|++..+. .|+. ..+ -++.-+...|+.++|+.++++-. .|+...| .+
T Consensus 36 ~~y~~aii--~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~l 105 (822)
T PRK14574 36 TQYDSLII--RARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGL 105 (822)
T ss_pred HHHHHHHH--HHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHH
Confidence 34555665 47999999999999999842 2553 233 88888889999999999999877 3433333 11
Q ss_pred c-c--cc----cc------------CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 143 V-D--RW----KW------------SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 143 i-~--~~----rw------------~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
. . .. .+ ..| |...|..|+..+-+.++.++|++.+++....
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 1 0 00 00 133 3445557778888889999999999888765
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=75.55 E-value=16 Score=41.18 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=54.6
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK 147 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r 147 (566)
+--..+++.-.+..-..+..++.+..+ .++ ..--|..=| .....|..|+|.+.+++.... .
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~--~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~------------- 336 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSK-RGG--LAAQYGRAL-QTYLAGQYDEALKLLQPLIAA--Q------------- 336 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhC-ccc--hHHHHHHHH-HHHHhcccchHHHHHHHHHHh--C-------------
Confidence 334556666666666666666665553 122 223354444 356789999999999997754 3
Q ss_pred cCCCChHhHHH-HHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 148 WSRPDVSVYTS-LVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 148 w~~PDVVTYNT-LIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
||-.-|.. ..+=+-+.+|+++|.+.++.++..
T Consensus 337 ---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 337 ---PDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred ---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 44444433 334555666666666666665553
No 108
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=75.43 E-value=10 Score=29.51 Aligned_cols=57 Identities=12% Similarity=-0.026 Sum_probs=46.4
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF 132 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG 132 (566)
+-+.+.+++++|++.++.+... ..-|...|.-.=..+.+.|+.++|++.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4577899999999999999852 22355666777788999999999999999988664
No 109
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.22 E-value=38 Score=35.39 Aligned_cols=93 Identities=11% Similarity=-0.032 Sum_probs=69.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
==+|-..|+...|.+-|++-.+. ..-+.-+|..+=.-|-+.|..|.|.+-|+.-.+.-.+ |
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-----------------~ 102 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-----------------N 102 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----------------c
Confidence 34788999999999999999852 2224457788889999999999999999986643221 1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGV 184 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc 184 (566)
--.-|--=--||..|+.++|++.|++-...--
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~ 134 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPA 134 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCC
Confidence 11122222358999999999999999887643
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=75.04 E-value=23 Score=32.72 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=56.2
Q ss_pred ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
+...|..+-..+.+.|+.++|+..|++....... .++ ...|..+-..+.+.|+.++|++.+++.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED---------------PNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456778888889999999999999998765321 122 467888889999999999999999998
Q ss_pred HhCCCCCCC
Q 047498 180 SRVGVSPGE 188 (566)
Q Consensus 180 ~~rGcsPdD 188 (566)
.+. .|++
T Consensus 99 l~~--~p~~ 105 (172)
T PRK02603 99 LEL--NPKQ 105 (172)
T ss_pred HHh--Cccc
Confidence 874 5643
No 111
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.85 E-value=5.6 Score=43.12 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=52.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
-++-.+|-.-+.++++.++..=.+ +|..||-+++|.||+.|.|.|+..+|.++.-+|...
T Consensus 105 ~~~irlllky~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 105 HTWIRLLLKYDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHccChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 346678888899999999988876 888999999999999999999999999988887654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=72.82 E-value=24 Score=36.84 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=77.4
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV 153 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV 153 (566)
..+-..|+.+++..+...... ...-|-...+.++....+.|+..+|+++|++-.... .||-
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-----------------p~d~ 134 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-----------------PTDW 134 (257)
T ss_pred HHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-----------------CCCh
Confidence 345557888888888887653 122344456779999999999999999999987654 4899
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKV 195 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntL 195 (566)
-+||-|=-.|-+.||.++|..-|.+-.+ +.|++-..+|-|
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNl 174 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNL 174 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhH
Confidence 9999999999999999999998887665 445444555543
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=72.51 E-value=34 Score=33.16 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=72.5
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHH
Q 047498 78 GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYT 157 (566)
Q Consensus 78 KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYN 157 (566)
..++.+++...++...+ ...-|...|..|-..|.+.|+.++|...|++-.+... -|...|.
T Consensus 51 ~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----------------~~~~~~~ 111 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----------------ENAELYA 111 (198)
T ss_pred CchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHH
Confidence 46777888888888764 2235777888998999999999999999998876542 3677788
Q ss_pred HHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCCcccccc
Q 047498 158 SLVQSL-AASLK--VSDALRLIDDISRVGVSPGEEVPFGK 194 (566)
Q Consensus 158 TLIdGL-CKsGR--VdEAlkLLeEM~~rGcsPdDvVTYnt 194 (566)
.+-..| -+.|+ .++|.++|++..+.. |++...+..
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~ 149 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALML 149 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHH
Confidence 887775 57787 499999999998854 544444433
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=72.39 E-value=14 Score=38.25 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=44.4
Q ss_pred cchh--HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhh---HHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 66 GVVE--EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDEC---CLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 66 ~~~~--~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTY---NsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
+.++ ...|.-|++.+|+|.|.+.|+.|.+ . ..|...+ .+.|+-+--..++.+|+.+|+||..+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 3455 4567899999999999999999974 2 2344333 44555544456899999999999765
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=72.15 E-value=42 Score=30.21 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=63.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCC-cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGV-LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~-PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
++..+ ..++.+.+.+.+.++....+.. ......=.+=+.+...|+.++|...|+....... .
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~----------------d 80 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP----------------D 80 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC----------------C
Confidence 34444 5899999999999998533221 1112222244788999999999999999987652 1
Q ss_pred CCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 151 PDV--SVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 151 PDV--VTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
|+. +..--|-..+-..|+.++|+..++....
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~ 113 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQIPD 113 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC
Confidence 321 1223366778889999999999977433
No 116
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=71.15 E-value=5.4 Score=32.56 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=37.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh-hhhHHHHHHHHhcCChhHHHHHHHH
Q 047498 72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTV-DECCLIINAAIDRGNTDLALSIFYA 127 (566)
Q Consensus 72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDv-vTYNsLI~GlCKaGrVDeAlsLF~E 127 (566)
+-..+.+.|+.++|+++++.... + ++. ...-.+=.+|.+.|+.++|+++|++
T Consensus 31 la~~~~~~~~y~~A~~~~~~~~~--~--~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQKLKL--D--PSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHCHTH--H--HCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 45788899999999999988321 1 223 2333445678899999999999975
No 117
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=70.33 E-value=22 Score=38.87 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=65.9
Q ss_pred chhHHHHHHHH--cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccc
Q 047498 67 VVEEELLSRVS--GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVD 144 (566)
Q Consensus 67 ~~~~aLIrGLC--KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~ 144 (566)
.|...-+.|+= -....|.|.++|-+|.+ ...-+..+.-+|=+=|-++|.+|+|+++.+...++
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------------- 98 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------------- 98 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------------
Confidence 34444444432 36789999999999984 22223445577888899999999999999997754
Q ss_pred ccccCCCChHhHH-------HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 145 RWKWSRPDVSVYT-------SLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 145 ~~rw~~PDVVTYN-------TLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
||. |++ -|=+-|-++|-+|.|.++|......|
T Consensus 99 ------pdl-T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ 137 (389)
T COG2956 99 ------PDL-TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG 137 (389)
T ss_pred ------CCC-chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence 332 222 23445667788888888888777754
No 118
>PRK11637 AmiB activator; Provisional
Probab=69.30 E-value=1.7e+02 Score=31.67 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHhhhhhhhhchhhhh
Q 047498 469 RARKSRVKRVREGLQNSLRGRIELID 494 (566)
Q Consensus 469 ~ar~~rv~~~r~~l~~~l~~~iel~~ 494 (566)
..++.+..+-.+.+++.|..+-+.+.
T Consensus 102 ~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 102 NKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444443
No 119
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.43 E-value=40 Score=39.65 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc--chhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHhhhhheee
Q 047498 429 YDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGE--PSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIE 506 (566)
Q Consensus 429 y~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~--~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~mieie 506 (566)
++.++.|++.|+...++- |.++.+|++++..+-+ ..-..|++++....+.|.+|++.=+.++...... +-+-|
T Consensus 560 r~ei~~rv~~Lk~~~e~Q---l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~--LS~AE 634 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQ---LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV--LSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHH
Confidence 688999999999988865 4555666666666644 2234599999999999999988888888654443 55566
Q ss_pred eehhhhHHHHHHhhhhhHHHHHHHHHH-hHHhHHHHHhHh
Q 047498 507 IEMDSDVLAAEAVSSAESISEQIQQIM-ELENLEEKWRLQ 545 (566)
Q Consensus 507 vemd~dv~aae~~~~~~~i~eqi~~l~-e~~~l~~~wr~q 545 (566)
.+|-.++- +|++|+++|- -|+++..+|+-|
T Consensus 635 r~~~~EL~---------~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 635 REFKKELE---------RMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765543 3444444442 234444455443
No 120
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=68.27 E-value=21 Score=40.32 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=70.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhh----cCCC-CcChhhh-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccc
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSK----RSGG-VLTVDEC-CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVD 144 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~e----r~Gg-~PDvvTY-NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~ 144 (566)
.|-.-|...|+++.|..++..-.+ ..|. .|++.+. +.+=..|...|++++|.-+|+++..--. .
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e----------~ 273 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE----------E 273 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----------H
Confidence 467788999999999999876542 2332 5655443 4466688899999999999999974311 1
Q ss_pred ccccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 145 RWKWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 145 ~~rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
.+..-.|. +.|++-|=..||+.|+++||...+++-
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 11111344 456777777899999999999888754
No 121
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=67.98 E-value=30 Score=32.52 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=59.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhcc-----chhHhHHHHHHHHHHhhhhhhhhch
Q 047498 420 AIRQQLLSQYDLLQSRIKDLKEAAEKEVW----MLARMCQLENKIYAVGE-----PSYRARKSRVKRVREGLQNSLRGRI 490 (566)
Q Consensus 420 a~~qqll~qy~~l~~r~~~l~~~~~~~v~----~lar~~ql~nk~~avg~-----~~y~ar~~rv~~~r~~l~~~l~~~i 490 (566)
+=-|+|....+.--.+-++..+.+++++- +-+-.-+..+|+..+.. ..|.-=..+.+.++..||..+..+=
T Consensus 34 ae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666555555556666666666654 44445566677777776 6677788899999999999999999
Q ss_pred hhhhhHHHhhh
Q 047498 491 ELIDSYARISS 501 (566)
Q Consensus 491 el~~~ya~~~~ 501 (566)
+.|+.|.+|.+
T Consensus 114 ~iI~~fe~i~~ 124 (126)
T PF09403_consen 114 QIIDNFEKIQS 124 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.84 E-value=28 Score=37.05 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=25.5
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
||..|+.|+|++.++... ..++..-| +..+.|..++|.|.+.++.|..
T Consensus 118 ~~~~~~~deAl~~~~~~~-----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE-----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred hhcCCChHHHHHHHhccc-----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 677777777777665521 12222222 2334555555555555555553
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=66.82 E-value=37 Score=34.11 Aligned_cols=57 Identities=9% Similarity=-0.088 Sum_probs=43.2
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcCh-hhh---HHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTV-DEC---CLIINAAIDRGNTDLALSIFYAMRSSFD 133 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDv-vTY---NsLI~GlCKaGrVDeAlsLF~EM~srG~ 133 (566)
..+-+.|++++|.+.|++..... |+. ... =-|..++.+.|+.++|...|++..+.-.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34567899999999999997532 222 222 2456888999999999999999987643
No 124
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.79 E-value=12 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
..|+|.|-..|...|+.++|.+++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46899999999999999999999998754
No 125
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=66.50 E-value=6.5 Score=42.28 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=52.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCH----------------HHHHHHHH
Q 047498 114 DRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKV----------------SDALRLID 177 (566)
Q Consensus 114 KaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRV----------------dEAlkLLe 177 (566)
++|.|+--+--++.|++.|+. -|..+|+.||+.+=|-.-+ .=|+++++
T Consensus 84 ~R~HveFIy~ALk~m~eyGVe----------------rDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVE----------------RDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred ccchHHHHHHHHHHHHHhcch----------------hhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 345566666667889999994 7888888888888775432 44889999
Q ss_pred HHHhCCCCCCCcccccceecc
Q 047498 178 DISRVGVSPGEEVPFGKVVRC 198 (566)
Q Consensus 178 EM~~rGcsPdDvVTYntLI~C 198 (566)
+|..-|+-| |--+--+||+.
T Consensus 148 qME~hGVmP-dkE~e~~lvn~ 167 (406)
T KOG3941|consen 148 QMEWHGVMP-DKEIEDILVNA 167 (406)
T ss_pred HHHHcCCCC-chHHHHHHHHH
Confidence 999999999 66777777773
No 126
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=65.85 E-value=15 Score=28.45 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=43.6
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcC-ChhHHHHHHHHHH
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRG-NTDLALSIFYAMR 129 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaG-rVDeAlsLF~EM~ 129 (566)
..+.+.|++++|+..|.+..+.. .-+...|.-+=.++.+.| +.++|++.|++-.
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 35778999999999999998532 125667788888899999 7999999998754
No 127
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.80 E-value=21 Score=35.93 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 047498 420 AIRQQLLSQYDLLQSRIKDLKE 441 (566)
Q Consensus 420 a~~qqll~qy~~l~~r~~~l~~ 441 (566)
.=+++|+.+|..|...++.|..
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555544
No 128
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=64.60 E-value=52 Score=37.24 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=78.1
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
.-+-..|+.++|++.+++-.+ .+|+ +.-|.+--.-|=+.|++++|.+.+++-+.--. -|
T Consensus 202 qhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----------------~D 261 (517)
T PF12569_consen 202 QHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----------------AD 261 (517)
T ss_pred HHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----------------hh
Confidence 346679999999999999985 2465 44567777788899999999999999886654 68
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
-+.=|--++-+-++|++++|.+++.-..+.+..|
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 8888888999999999999999999998888755
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=63.06 E-value=46 Score=32.05 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF 132 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG 132 (566)
.+-..|++++|.+.|.++..+... .--....=.+..++.+.|+.++|...|++..+.-
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356789999999999999754222 1222345678999999999999999999988764
No 130
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=62.24 E-value=27 Score=36.89 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=60.5
Q ss_pred chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc--cccc
Q 047498 67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG--TLVD 144 (566)
Q Consensus 67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY--aLi~ 144 (566)
+|+++ |..|-..|....|.++-.+.. .||--=|-.-|.+|++.|++|+=.++..+ +. . .++| .+..
T Consensus 179 Sl~~T-i~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK-s--PIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDT-IRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK-S--PIGYEPFVEA 246 (319)
T ss_pred CHHHH-HHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC-C--CCChHHHHHH
Confidence 35555 445666777777777766653 36666678888888888888765554322 11 1 1344 1122
Q ss_pred cccc--------CCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 047498 145 RWKW--------SRPDVSVYTSLVQSLAASLKVSDALRLI 176 (566)
Q Consensus 145 ~~rw--------~~PDVVTYNTLIdGLCKsGRVdEAlkLL 176 (566)
+.+. .-|. ++|..-|+-|.+.|.+.+|.+.=
T Consensus 247 ~~~~~~~~eA~~yI~k-~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHCCCHHHHHHHHHh-CChHHHHHHHHHCCCHHHHHHHH
Confidence 2211 0133 67899999999999999998763
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=62.19 E-value=52 Score=37.05 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=51.9
Q ss_pred cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
.+...|-++--.....|+.++|...|++.... .|+...|+.+-+.++..|+.++|...+++-
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------------------~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL------------------EMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456776633344569999999999998854 589999999999999999999999999886
Q ss_pred Hh
Q 047498 180 SR 181 (566)
Q Consensus 180 ~~ 181 (566)
.+
T Consensus 480 ~~ 481 (517)
T PRK10153 480 FN 481 (517)
T ss_pred Hh
Confidence 55
No 132
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.86 E-value=1e+02 Score=32.33 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=68.1
Q ss_pred HHcCCCHHHHHHHHHHHhhcC-CCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498 76 VSGAKDASEVLEIVAESSKRS-GGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS 154 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~-Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV 154 (566)
+-+.|++.+|...|.+-..++ +..-..-+|==|=..+.+.|+.++|-.+|..+.+.--+ -.+ .||
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-----------s~K-Apd-- 216 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-----------SPK-APD-- 216 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-----------CCC-ChH--
Confidence 778999999999999998542 11111224445778999999999999999999875321 000 233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 155 VYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 155 TYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
++=-|-..+.+.|+-++|+..|++..++
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445666778899999999999999876
No 133
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=58.72 E-value=1.3e+02 Score=26.65 Aligned_cols=54 Identities=7% Similarity=-0.022 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHH
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFY 126 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~ 126 (566)
..+|+.|-+.+...+.+.++..+... + ..+...+|.+|.-||+.+. .+.++.|.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 57889999999999999999999853 3 3567789999999998754 45556665
No 134
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=58.33 E-value=17 Score=40.52 Aligned_cols=141 Identities=21% Similarity=0.171 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhc----CCCCc----ChhhhHHHHHHHHh----cCChhHHHHHHHHHHhcCCC---
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKR----SGGVL----TVDECCLIINAAID----RGNTDLALSIFYAMRSSFDQ--- 134 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er----~Gg~P----DvvTYNsLI~GlCK----aGrVDeAlsLF~EM~srG~~--- 134 (566)
.+-||+|.|.+++++|...+++-.+. -+|.| .+.+|.-|+.+.-. +.-.-+|..+|+-+...|+.
T Consensus 51 p~TiDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhG~~~~R~v~~~v~~PvQvRHGtpdarlL~e~~~a~G~ta~E 130 (441)
T PF06368_consen 51 PLTIDSYTRQNDYEEAERGLEESIETGRSMLNGFPLVNHGVETCRKVLEAVDFPVQVRHGTPDARLLAEIALASGFTAFE 130 (441)
T ss_dssp EEEB-HHHHTT-HHHHHHHHHHHHHHTS--SSSB-HHHHHHHHHHHHHHH-SS-EEEE---SS-HHHHHHHHHTT--EEE
T ss_pred ceeeecccccccHHHHHHHHHhchhcCcccccCCccccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCccC
Confidence 34589999999999999999888641 12322 23556777777721 23345788999999999974
Q ss_pred CCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec--cchhh-HHHHhhc--
Q 047498 135 GLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR--CPTCL-IAVAVAQ-- 209 (566)
Q Consensus 135 PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~--C~tC~-~A~aV~Q-- 209 (566)
++-++|-+-.+... - |=+++ ..|....+++..-.+.|+.+ +--+||.|-. ||-|. .|+.+++
T Consensus 131 GG~ISYnlPY~k~v-----p----Le~si---~~Wqy~drl~g~y~e~Gv~i-nrE~FGpLtgtLvPPsisiav~ilE~L 197 (441)
T PF06368_consen 131 GGPISYNLPYSKNV-----P----LEKSI---RDWQYVDRLCGYYEENGVEI-NREPFGPLTGTLVPPSISIAVSILEAL 197 (441)
T ss_dssp --TTTTTTTT-SS-----------HHHHH---HHHHHHHHHHHHHHHTT----EEE--TTTTSSS--HHHHHHHHHHHHH
T ss_pred CCceeeccccCCCC-----C----HHHHH---HHHHHHHHHHHHHHhcCCcc-ccccCCCCCcCccCcHHHHHHHHHHHH
Confidence 45555544222111 0 11111 23556667777778889999 8999999776 55464 7777755
Q ss_pred --ccCcceeeeccccc
Q 047498 210 --PQHGIQIVSCAKCR 223 (566)
Q Consensus 210 --pq~GiqlV~c~~cR 223 (566)
-+||++-++-+|..
T Consensus 198 la~eqGVksiSv~Y~Q 213 (441)
T PF06368_consen 198 LAAEQGVKSISVGYAQ 213 (441)
T ss_dssp HHHHTT--EEEEEEE-
T ss_pred HHHHcCCeEEEecccc
Confidence 88999988877764
No 135
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.28 E-value=56 Score=37.56 Aligned_cols=82 Identities=12% Similarity=0.025 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHH
Q 047498 79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTS 158 (566)
Q Consensus 79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNT 158 (566)
-|++.-|..+|.+..+ -.||.-.+++.|+-=.+...++.|.++++... .|+|+|.+|--
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV------------------~~HP~v~~wik 212 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFV------------------LVHPKVSNWIK 212 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh------------------eecccHHHHHH
Confidence 4666666777776652 46889999999999999999999999988765 24799999988
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 047498 159 LVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 159 LIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
-.+-=-|.|.+.-|+.+++.-+.
T Consensus 213 yarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888889999999888876554
No 136
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=55.64 E-value=59 Score=33.13 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=72.8
Q ss_pred chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498 67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW 146 (566)
Q Consensus 67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~ 146 (566)
++-.++|. ++..++.+.|..+|+...+.. .-|..-+..-|+-+.+.|+.+.|..||+.-... +
T Consensus 38 y~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l------------- 100 (280)
T PF05843_consen 38 YVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDFLIKLNDINNARALFERAISS-L------------- 100 (280)
T ss_dssp HHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-------------
T ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-------------
Confidence 46667776 555688888999999998543 235556788889999999999999999987654 3
Q ss_pred ccCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 147 KWSRPDV----SVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 147 rw~~PDV----VTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
|.. ..|+..|+-=.+.|.++...++.++|...
T Consensus 101 ----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 101 ----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp ----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333 37999999999999999999999998873
No 137
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.58 E-value=51 Score=37.82 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHH
Q 047498 80 KDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSL 159 (566)
Q Consensus 80 GrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTL 159 (566)
+++++|..=|++-..- ..-++..|-=+=.++.|.+++++++..|++-.++... -|.| ||-.
T Consensus 408 ~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~---------------~~Ev--y~~f 468 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN---------------CPEV--YNLF 468 (606)
T ss_pred HHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------CchH--HHHH
Confidence 4566777777776521 1224556666777788999999999999999888643 2555 4445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec-cchhhHHHHhhcccC
Q 047498 160 VQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR-CPTCLIAVAVAQPQH 212 (566)
Q Consensus 160 IdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~-C~tC~~A~aV~Qpq~ 212 (566)
-.-|-..+++++|.+.++.-++ +.| +-..++++ .++...|+.++||-+
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~--LE~---~~~~~~v~~~plV~Ka~l~~qwk~ 517 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIE--LEP---REHLIIVNAAPLVHKALLVLQWKE 517 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHh--hcc---ccccccccchhhhhhhHhhhchhh
Confidence 5668899999999999997655 445 23344554 444557777887654
No 138
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=55.41 E-value=49 Score=34.88 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR-- 181 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~-- 181 (566)
+|.-++..+...|+.|.+.+.+++....-. -|---|--|+.+|-+.|+-.+|+..++.|.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-----------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 345566666667777777777777665432 4888899999999999999999999998876
Q ss_pred ---CCCCCC
Q 047498 182 ---VGVSPG 187 (566)
Q Consensus 182 ---rGcsPd 187 (566)
-|+.|.
T Consensus 218 ~edlgi~P~ 226 (280)
T COG3629 218 AEELGIDPA 226 (280)
T ss_pred hhhcCCCcc
Confidence 699994
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.06 E-value=47 Score=35.47 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
++.|.-....+++.+|+-+|.||.+ ...|+.-+-|-.-.+....|++++|.+++++-..+
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4555555555666666666666653 24455556666666666666666666666666554
No 140
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=54.90 E-value=81 Score=31.38 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHhhhhheeeeehh
Q 047498 431 LLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMD 510 (566)
Q Consensus 431 ~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~mieievemd 510 (566)
.|++||+.|+....+-...+-.+-.+|.||... ++-..+.......||..+. +-=.....|=+.--++|
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-----~~~~~~~e~~i~~Le~ki~------el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-----EAELKELESEIKELEMKIL------ELQRQAAKLKEKKEAKD 158 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 478899999999888888899999999999887 4556666667777777632 22222233333444566
Q ss_pred hhHHHHHHhhhhhHHHHHHHH
Q 047498 511 SDVLAAEAVSSAESISEQIQQ 531 (566)
Q Consensus 511 ~dv~aae~~~~~~~i~eqi~~ 531 (566)
+++.+.+.- ++.|.++++.
T Consensus 159 ~ei~~lks~--~~~l~~~~~~ 177 (190)
T PF05266_consen 159 KEISRLKSE--AEALKEEIEN 177 (190)
T ss_pred HHHHHHHHH--HHHHHHHHHH
Confidence 666555433 4456665543
No 141
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=53.49 E-value=52 Score=34.70 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=51.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
.++..+-..|++|.+.+.+.+..+. ..-|...|.-||.+|.+.|+-..|+..|+.|.+
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4678888899999999999999853 346889999999999999999999999999886
No 142
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=52.91 E-value=27 Score=24.91 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 155 VYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 155 TYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
+|+.|=+.+++.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 58889999999999999999999854
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=51.63 E-value=97 Score=28.39 Aligned_cols=68 Identities=12% Similarity=-0.061 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
...|..+...+-..|+.++|+..|++-....-. .+ ...+|.-|=..+-+.|+.++|++.++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445677777888899999999999988654211 12 24578888888999999999999999988
Q ss_pred hCCCCC
Q 047498 181 RVGVSP 186 (566)
Q Consensus 181 ~rGcsP 186 (566)
+. .|
T Consensus 100 ~~--~~ 103 (168)
T CHL00033 100 ER--NP 103 (168)
T ss_pred Hh--Cc
Confidence 64 45
No 144
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.59 E-value=94 Score=36.84 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.+....+..|...+..+...|+... .|.+..|+.+++.....|- +.+++ .+..... ..|-..+..|+
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG--~~d~~~If~Ll 253 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIG--AVDKQYLYELL 253 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHc--ccCHHHHHHHH
Confidence 4555666766654345555666666666544 6999999999998876552 34444 2222112 24566677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsPd 187 (566)
+.+.+ ++.+.|++++++|...|..+.
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 88887 899999999999999999883
No 145
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.30 E-value=22 Score=25.34 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHH
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMR 129 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~ 129 (566)
+|+.|=+.|++.|+.++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999843
No 146
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=51.16 E-value=1.2e+02 Score=25.33 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhcccccccccCCCcccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 047498 388 VAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKE 446 (566)
Q Consensus 388 ~~a~a~~~~g~~~n~~~lp~l~qlp~~~v~~~a~~qqll~qy~~l~~r~~~l~~~~~~~ 446 (566)
.|.++.+++|+++-.++-|+--+ -+|++|-.+.+.+..+++++.+...+-
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG~---------e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSGK---------ETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888887654 688888888888888888887766554
No 147
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.98 E-value=20 Score=29.24 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=23.8
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
|-.-.=-+|.||...|+.++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445689999999999999999999865
No 148
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=50.66 E-value=14 Score=41.55 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=49.7
Q ss_pred cccccchhHHHHHHHHc--CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc
Q 047498 62 ESENGVVEEELLSRVSG--AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN 139 (566)
Q Consensus 62 ~~~~~~~~~aLIrGLCK--AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT 139 (566)
|...+.+|.=|=.+||. +..+|||+++.++-.. .+.|-. -|-+..|.+++.+|.++|+.||.+|
T Consensus 197 evd~srI~~Rl~t~y~d~~a~~ldeAl~~a~~~~~--ag~p~S------------Igl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 197 EVDESRIDKRLRTGYLDEIAETLDEALALAEEATA--AGEPIS------------IGLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred EeCHHHHHHHHhcchhhhhcCCHHHHHHHHHHHHh--cCCceE------------EEEeccHHHHHHHHHHcCCCCceec
Confidence 33455566666667876 8899999999999874 334432 3566789999999999999999987
Q ss_pred c
Q 047498 140 G 140 (566)
Q Consensus 140 Y 140 (566)
-
T Consensus 263 D 263 (561)
T COG2987 263 D 263 (561)
T ss_pred c
Confidence 6
No 149
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=49.81 E-value=80 Score=37.31 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCcccccchHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047498 409 SQLPQKSVDTIAIRQQLL---SQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYA 462 (566)
Q Consensus 409 ~qlp~~~v~~~a~~qqll---~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~a 462 (566)
..+|.-.-|+..+|+... .|...+++++++.-+.+.+-+..|+++-+..+||++
T Consensus 63 ~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~ 119 (766)
T PF10191_consen 63 QRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEA 119 (766)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 344555668888877543 456666666666666566667777777777666665
No 150
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.54 E-value=55 Score=29.47 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=24.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 105 CCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 105 YNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
|+.|+.-|-.+|+.++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999999887
No 151
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=48.62 E-value=1.8e+02 Score=32.48 Aligned_cols=100 Identities=18% Similarity=0.083 Sum_probs=67.2
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC------------------------------hhhhHHHHHHHHhcCC
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLT------------------------------VDECCLIINAAIDRGN 117 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD------------------------------vvTYNsLI~GlCKaGr 117 (566)
+--+++-.|-..|+.|+|.+++.+-.++ +.-|+ ...+.+|=.=|.|.+.
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 3346777888899999998888877532 22122 1233333334455555
Q ss_pred hhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 118 TDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 118 VDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
..+|-+.|+.-.+. .|++.+|+.|=+.|-+.|...+|-++.++-...=.+|
T Consensus 344 w~kA~~~leaAl~~------------------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 344 WGKASEALEAALKL------------------RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHHhc------------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 55555555533322 6999999999999999999999999998866444444
No 152
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=48.38 E-value=6.9 Score=34.74 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=61.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.+|+.|-+++..++...++..... .+..-+..-+|.|+.-||+.+..++..++++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~----------------------- 67 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKT----------------------- 67 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-----------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHccc-----------------------
Confidence 457777788889999888888874 23234567789999999999888888887761
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498 151 PDVSVYTSLVQSLAASLKVSDALRLIDDI 179 (566)
Q Consensus 151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM 179 (566)
.+-+-...+++-+.+.|.+++|..++.+|
T Consensus 68 ~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 68 SNNYDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp SSSS-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 11233456777778888888888888775
No 153
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.78 E-value=70 Score=34.49 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=72.8
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccc---
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVD--- 144 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~--- 144 (566)
+-+.+++.+--.|.+.-.++++.+..++ ...-+.+.-+.|..--...|+++-|-..|+...+.--.-|-.++....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 5578888888888888889999988863 333455555666666677899999999999665431111111110000
Q ss_pred --------------------ccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 145 --------------------RWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 145 --------------------~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+...-.-|.+.-|.=--.+-=.|+..||++.++.|+.+--.|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 001112344444442222334699999999999999875444
No 154
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=47.49 E-value=1.6e+02 Score=28.84 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498 79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF 132 (566)
Q Consensus 79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG 132 (566)
.++.+++..+++.|.--.-..+.+.+|-..| +.++|++++|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 7888888888888842111234555665555 367889999999998888765
No 155
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.15 E-value=1.7e+02 Score=32.57 Aligned_cols=72 Identities=10% Similarity=-0.069 Sum_probs=57.9
Q ss_pred cccchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc
Q 047498 64 ENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG 140 (566)
Q Consensus 64 ~~~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY 140 (566)
.+-|--+-+=++|-+-|.+.+|.+.|+...+. .|-+.||--|=+.|-+..+...|+.+|.+-.... |..|||
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~ 292 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTY 292 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--Cchhhh
Confidence 34456688889999999999999999988742 2566689999999999999999999998876542 444444
No 156
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=47.15 E-value=59 Score=31.66 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhh
Q 047498 417 DTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLA--RMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRG 488 (566)
Q Consensus 417 ~~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~la--r~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~ 488 (566)
....+.++ |.+|--...|+.++++.-+...-.-. ---+++++|.+ +..|+.|-..|.+.||+.|..
T Consensus 103 ~~~~Lyq~-L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a-----~e~RL~RCr~Ai~~iE~~I~~ 170 (173)
T PF07445_consen 103 PIHQLYQR-LAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILA-----LEQRLQRCRQAIEKIEEQIQR 170 (173)
T ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33445554 45566666888888776554433211 23367778775 899999999999999998764
No 157
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=47.13 E-value=37 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 103 DECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 103 vTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
.++|.|=..|...|+.++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998754
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=46.88 E-value=2.1e+02 Score=27.97 Aligned_cols=98 Identities=6% Similarity=-0.061 Sum_probs=67.6
Q ss_pred ccchhH--HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccc
Q 047498 65 NGVVEE--ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECC-LIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGT 141 (566)
Q Consensus 65 ~~~~~~--aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYN-sLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYa 141 (566)
.+.||. .+=.-|+..|++++|..+|+-... . -|....|- .|=-++=..|+..+|+..|.....-..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------- 100 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-Y--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------- 100 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------
Confidence 344443 334568889999999999998863 1 24555553 343444457999999999988775543
Q ss_pred cccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 142 LVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 142 Li~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
=|-..|=-+=..+-+.|+++.|++-|+.-+..
T Consensus 101 ---------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 101 ---------DAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred ---------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23344444555778899999999999976654
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=46.34 E-value=74 Score=33.65 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498 110 NAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE 189 (566)
Q Consensus 110 ~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv 189 (566)
..+.+.|+.++|+++|++...... -|...|..+-..|.+.|+.++|+..+++.... .|++.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-----------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~ 70 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-----------------NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLA 70 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCH
Confidence 456788999999999999987643 35667888888999999999999999999884 57554
Q ss_pred ccccce
Q 047498 190 VPFGKV 195 (566)
Q Consensus 190 VTYntL 195 (566)
..|..+
T Consensus 71 ~a~~~l 76 (356)
T PLN03088 71 KAYLRK 76 (356)
T ss_pred HHHHHH
Confidence 455443
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=46.31 E-value=1.5e+02 Score=33.70 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=63.5
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhh-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDEC-CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS 154 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTY-NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV 154 (566)
+-.+|+.++|++.|.+-. +..+|..++ -..=..+.+.|+.++|..+|.++..+.. -|..
T Consensus 14 l~e~g~~~~AL~~L~~~~---~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-----------------dn~~ 73 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNE---KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-----------------DNYD 73 (517)
T ss_pred HHHCCCHHHHHHHHHhhh---hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHH
Confidence 466899999999998865 235776665 5566778899999999999999998752 3444
Q ss_pred hHHHHHHHHHhcC-----CHHHHHHHHHHHHhC
Q 047498 155 VYTSLVQSLAASL-----KVSDALRLIDDISRV 182 (566)
Q Consensus 155 TYNTLIdGLCKsG-----RVdEAlkLLeEM~~r 182 (566)
=|..|...++-.+ .++.-.++++++...
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~ 106 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEK 106 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHh
Confidence 4555555553333 567778888888665
No 161
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.94 E-value=1.6e+02 Score=33.29 Aligned_cols=98 Identities=14% Similarity=0.019 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.+..+.+..|...+......|+... .|.+..|+.+++.....| .+.+|. .+...+. .++-...--|+
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~--~~~It~~~V~~~lg--~~~~~~i~~ll 253 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYG--NGKVLIADVKTMLG--TIEPLLLFDIL 253 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHHC--CCCHHHHHHHH
Confidence 4444555665643344444555555555443 599999999999887665 245555 2222211 35666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+.. |+.+.|++++++|...|..|
T Consensus 254 ~al~~-~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 254 EALAA-KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 77665 89999999999999999998
No 162
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=45.83 E-value=63 Score=39.44 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 78 GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 78 KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
..+..+.|+++|..... ...-|..+-|-|=-.|...|++++|..+|...+..
T Consensus 624 ~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred HHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 34455555555555442 11223444454544555555555555555555544
No 163
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.28 E-value=1e+02 Score=31.01 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=57.3
Q ss_pred HHHHHHHc--CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498 71 ELLSRVSG--AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW 148 (566)
Q Consensus 71 aLIrGLCK--AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw 148 (566)
.+|+||+- .+++++|++++.+-. ..|+- -.-+|..+..+|+.+.|+.+++.+.
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~ps----~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~------------------- 135 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHPS----LIPWF--PDKILQALLRRGDPKLALRYLRAVG------------------- 135 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCCC----CCccc--HHHHHHHHHHCCChhHHHHHHHhcC-------------------
Confidence 66788876 678889988885542 22321 1358999999999999999998874
Q ss_pred CCCChHhHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 149 SRPDVSVYT--SLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 149 ~~PDVVTYN--TLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
|+..+.. .+......++.+.||..+-+....
T Consensus 136 --p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 136 --PPLSSPEALTLYFVALANGLVTEAFSFQRSYPD 168 (226)
T ss_pred --CCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCch
Confidence 4444442 222333555889999887665544
No 164
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=45.08 E-value=1.3e+02 Score=35.44 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=79.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhh-hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDE-CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW 148 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvT-YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw 148 (566)
--|+.-+=+.|+.+.|.+.++.-. +.+|+.+. |-+==.=||..|.+++|...+++-++--
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD---------------- 435 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD---------------- 435 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----------------
Confidence 345666778999999999999998 34575443 2222255899999999999999988543
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498 149 SRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 149 ~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~ 199 (566)
.||++.=.-=.+-+-++.++++|.++.....+.|. ++|.+=.-+.|-
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~---~~~~~L~~mqcm 482 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF---GAVNNLAEMQCM 482 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc---chhhhHHHhhhH
Confidence 47776554555667789999999999999999998 356655555554
No 165
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=44.88 E-value=26 Score=34.38 Aligned_cols=52 Identities=15% Similarity=0.475 Sum_probs=32.8
Q ss_pred hhhhhhHHHhhhhheeeeehhhhHHHHHHhhhhhHHHHHHHHHHhHHhH-HHHHhHhhhhchH
Q 047498 490 IELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENL-EEKWRLQAEANDE 551 (566)
Q Consensus 490 iel~~~ya~~~~mieievemd~dv~aae~~~~~~~i~eqi~~l~e~~~l-~~~wr~qaea~de 551 (566)
..+|+...|+ ..+++|.+-+..|+ +.|+++++++.|.++- -++|| |.|-+|+
T Consensus 131 ~alL~~L~kl-----lgl~vd~~~L~e~A----e~ie~~~~~~~~~~~~~~~~~~-~~~~~~~ 183 (188)
T TIGR00162 131 KAVLEVLCKM-----LSLEVSVEALEERA----KEMEKIIAKIKEMEEEMVQQWK-AKPSEED 183 (188)
T ss_pred HHHHHHHHHH-----HCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcc-CCCcccc
Confidence 3466666666 45566665555544 4799999999988863 23387 4444443
No 166
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=43.47 E-value=89 Score=30.63 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=44.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 109 INAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 109 I~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
+...++.+..+++-.+++.|+--..+ .|.+-+|-..++ -+.|+++||.++|+++..++
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~---------------~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE---------------FPELDLFDGWLH--IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC---------------chHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC
Confidence 34557889999999999999855332 355666666554 46799999999999997765
No 167
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.91 E-value=2.5e+02 Score=28.98 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCCcccccchHHH---HHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhcc
Q 047498 408 LSQLPQKSVDTIA---IRQQLLSQYDLLQSRIKDLKEAAEKE-VWMLARMCQLENKIYAVGE 465 (566)
Q Consensus 408 l~qlp~~~v~~~a---~~qqll~qy~~l~~r~~~l~~~~~~~-v~~lar~~ql~nk~~avg~ 465 (566)
|+++|....+.+. ..++|-.|.|....++.+...+..+. +--+.++-+|+.++...-.
T Consensus 20 L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~ 81 (291)
T PF10475_consen 20 LEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALV 81 (291)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776444433 35666667788888888877776666 5567777777777766443
No 168
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=1e+02 Score=33.87 Aligned_cols=57 Identities=9% Similarity=-0.057 Sum_probs=47.4
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQ 134 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~ 134 (566)
+.|.|..++|++-|.+-.+-+|.. ..++||.-+.-| ++|+.+.|+++..|+..+|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 468999999999999998744444 467899877655 678899999999999999986
No 169
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=42.47 E-value=90 Score=35.95 Aligned_cols=65 Identities=28% Similarity=0.262 Sum_probs=46.0
Q ss_pred hhchhhhhhHHHhhhhheee-----eehhhhHHHHHHhhhhhHHHHHHHHHHhHHhHHHHHhHhhhhchHHHH
Q 047498 487 RGRIELIDSYARISSMIEIE-----IEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAER 554 (566)
Q Consensus 487 ~~~iel~~~ya~~~~mieie-----vemd~dv~aae~~~~~~~i~eqi~~l~e~~~l~~~wr~qaea~de~er 554 (566)
.+|.||-.+|.||-.-|-=. =+..-++-|||+.+|.+=|.+-..--+. ...|+=|+|||- ||+|.
T Consensus 650 daK~ElA~~Y~klLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaId--ltvEkprlqAeL-dd~ea 719 (790)
T PF07794_consen 650 DAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAID--LTVEKPRLQAEL-DDLEA 719 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHhhhHHHhhc-hHHHh
Confidence 46889999999997766311 1345678899999999866655554444 448899999995 44543
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.68 E-value=1.1e+02 Score=31.40 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh----HhHHHHHHHHHhcCCHHHHHHHHH
Q 047498 102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV----SVYTSLVQSLAASLKVSDALRLID 177 (566)
Q Consensus 102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV----VTYNTLIdGLCKsGRVdEAlkLLe 177 (566)
...|+.-++=+.+.|+.++|+..|+++...- ||- -.|--|-..|-+.|+.++|+..|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y------------------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY------------------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467777766688899999999999998763 432 234566778889999999999999
Q ss_pred HHHhC
Q 047498 178 DISRV 182 (566)
Q Consensus 178 EM~~r 182 (566)
.+.+.
T Consensus 205 ~vv~~ 209 (263)
T PRK10803 205 SVVKN 209 (263)
T ss_pred HHHHH
Confidence 99875
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.46 E-value=1.4e+02 Score=31.59 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccc----ccc--------CCCChHhHHHHHHHHHhcCCHH
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDR----WKW--------SRPDVSVYTSLVQSLAASLKVS 170 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~----~rw--------~~PDVVTYNTLIdGLCKsGRVd 170 (566)
+.+-.|.-+.+.|+...|-++..+-. + ||..=| ..+.. -.| ..=.-+=|-..|+.+-+.|+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHH
Confidence 45666777788999988888765542 2 222111 00111 112 1112277888888888888888
Q ss_pred HHHHHHHH
Q 047498 171 DALRLIDD 178 (566)
Q Consensus 171 EAlkLLeE 178 (566)
+|.+++..
T Consensus 255 eA~~yI~k 262 (319)
T PF04840_consen 255 EASKYIPK 262 (319)
T ss_pred HHHHHHHh
Confidence 88887776
No 172
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.16 E-value=35 Score=36.45 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=31.8
Q ss_pred CcChhhh-HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 047498 99 VLTVDEC-CLIINAAIDRGNTDLALSIFYAMRSSFDQ 134 (566)
Q Consensus 99 ~PDvvTY-NsLI~GlCKaGrVDeAlsLF~EM~srG~~ 134 (566)
.||..+| |.-|....|.|++++|++|++|-.+.|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4677665 89999999999999999999999999884
No 173
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.13 E-value=1.7e+02 Score=33.24 Aligned_cols=114 Identities=17% Similarity=0.120 Sum_probs=73.0
Q ss_pred chhHHHHHHH--HcCCCH--HHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-c
Q 047498 67 VVEEELLSRV--SGAKDA--SEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-T 141 (566)
Q Consensus 67 ~~~~aLIrGL--CKAGrl--DEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-a 141 (566)
.+..+++.++ ..-.++ ++..+.+....+..|...+......|. -+ -.|.+..|+.+++.....+ .+.+|| .
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia-~~-S~Gd~RdAL~lLeq~i~~~--~~~it~~~ 238 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA-KK-GDGSVRDMLSFMEQAIVFT--DSKLTGVK 238 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-cCChHHHHHHHHHHHHHhC--CCCcCHHH
Confidence 3445555554 223333 445566666643334445555555444 33 3499999999998865432 234676 3
Q ss_pred cccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 142 LVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 142 Li~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+...+. ..+.-.+..+++.+...+....|+.++++|...|..|
T Consensus 239 V~~~lg--~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 239 IRKMIG--YHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 323222 2567777788888877777789999999999999999
No 174
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=39.80 E-value=54 Score=24.09 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 155 VYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 155 TYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
+|..|-..|-+.|+.++|.++|++.++. .|+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4677888999999999999999999985 5654
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.78 E-value=2e+02 Score=30.82 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=69.3
Q ss_pred HHHcCCCHHHHHHHHHHHhhc--CC-CCcChhh-hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 75 RVSGAKDASEVLEIVAESSKR--SG-GVLTVDE-CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er--~G-g~PDvvT-YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.=+...+.++.++++.+|... .| .-+|..+ |--++=+....|+.+.|...++..+.+... .
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S------------- 85 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--S------------- 85 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--C-------------
Confidence 346678999999999988632 22 2455543 566777888999999999999999987632 1
Q ss_pred CCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccccc
Q 047498 151 PDV-SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFG 193 (566)
Q Consensus 151 PDV-VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYn 193 (566)
+-| .-|.++.. ..|+.++|+++++...+.. |+|-|+|-
T Consensus 86 ~RV~~lkam~lE---a~~~~~~A~e~y~~lL~dd--pt~~v~~K 124 (289)
T KOG3060|consen 86 KRVGKLKAMLLE---ATGNYKEAIEYYESLLEDD--PTDTVIRK 124 (289)
T ss_pred hhHHHHHHHHHH---HhhchhhHHHHHHHHhccC--cchhHHHH
Confidence 111 12333333 3588899999999988876 76666664
No 176
>PRK03918 chromosome segregation protein; Provisional
Probab=39.49 E-value=5.7e+02 Score=29.93 Aligned_cols=35 Identities=9% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047498 420 AIRQQLLS------QYDLLQSRIKDLKEAAEKEVWMLARMC 454 (566)
Q Consensus 420 a~~qqll~------qy~~l~~r~~~l~~~~~~~v~~lar~~ 454 (566)
.-|.+++. .|+.+..++++.......++.-|...+
T Consensus 145 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556654 588888888888887777766655544
No 177
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.31 E-value=2.3e+02 Score=25.50 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047498 418 TIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLEN 458 (566)
Q Consensus 418 ~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~n 458 (566)
..+..+|+-.+.+.|+.++..|...-++=...+.-+-.|++
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888777766666677777765
No 178
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.16 E-value=2.1e+02 Score=32.25 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.+....+..|...+..+...|+... .|++..|+..++.....+ +.+|+ .+..... .|+-...--|+
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~---~~It~~~V~~~l~--~~~~~~if~Li 249 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALG---TPVTRKQVEEALG--LPPQERLRGIA 249 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHC--CCcHHHHHHHH
Confidence 3455556665543334444444444444333 488888888888876542 23454 2211111 35556666778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+ ..++.++|++++++|...|..|
T Consensus 250 ~al-~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 250 AAL-AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 887 5599999999999999999888
No 179
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.74 E-value=1.5e+02 Score=35.41 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=69.5
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCCcc-cccc-----------
Q 047498 78 GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQ-GLSENG-TLVD----------- 144 (566)
Q Consensus 78 KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~-PdvvTY-aLi~----------- 144 (566)
..|.+|-|++-+++-.+..-..| .+||-|=+++-..|.|++|...|++-..--.. +|.+.- ..+.
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 46778888888887764321123 47999999999999999999998876543211 121110 0000
Q ss_pred ----ccccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498 145 ----RWKWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 145 ----~~rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd 187 (566)
.+. +.|+ ...+|-|-.-|-..|+++||+.-+.+-.+ +.|+
T Consensus 376 ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 376 LYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 001 2344 34578888889999999999999999877 6674
No 180
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=38.26 E-value=56 Score=34.79 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHhhhhheeeeeh
Q 047498 445 KEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEM 509 (566)
Q Consensus 445 ~~v~~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~mieievem 509 (566)
+|--.=.|+-|||-+++.||...--.=..||++-++++.++|+ ..||-..|-.=..=+|-|+||
T Consensus 36 keq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~-~aely~e~~~e~v~~eYe~E~ 99 (291)
T KOG4466|consen 36 KEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLR-VAELYREYCVERVEREYECEI 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455668999999999999996555556788887777777753 456666665544444444444
No 181
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=37.96 E-value=1.5e+02 Score=29.22 Aligned_cols=62 Identities=18% Similarity=0.035 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFD 133 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~ 133 (566)
+.-++.+.+.|+-|+--++..+... +..++..-.-.|=++|-|-|+..+|-+|+.+-+++|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4567889999999999999999862 3446666677888999999999999999999999997
No 182
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.80 E-value=1.2e+02 Score=29.75 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=42.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 047498 113 IDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG-VSP 186 (566)
Q Consensus 113 CKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG-csP 186 (566)
...+..+++-.+++.|+--..+ .|.+.+|-..|+ -+.|+++||.++|++..+.+ +.|
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~---------------~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN---------------LKELDMFDGWLL--IARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC---------------ccccchhHHHHH--HHcCCHHHHHHHHHhhhccCCCch
Confidence 3489999999999999854332 355555555554 36799999999999999987 445
No 183
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.00 E-value=5.5e+02 Score=28.90 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHhHHHHHhHhhhhchHHH
Q 047498 514 LAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAE 553 (566)
Q Consensus 514 ~aae~~~~~~~i~eqi~~l~e~~~l~~~wr~qaea~de~e 553 (566)
+..|=.+-...+++.-.+|-+|+..-..|.-+...|..+-
T Consensus 369 v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~ 408 (582)
T PF09731_consen 369 VEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQ 408 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888888888888888887666555443
No 184
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.80 E-value=2.4e+02 Score=32.93 Aligned_cols=98 Identities=18% Similarity=0.083 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.+.+..+..|...+......|+.. -.|.+..|+.++++....| .+.+|. .+...+. .+|-.....|+
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~--~~~It~~~V~~~Lg--~~~~~~i~~Ll 258 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFG--SGQLQEAAVRQMLG--SVDRSHVFRLI 258 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHHc--CCCHHHHHHHH
Confidence 445566666654334555555566666653 3499999999998877655 233444 2222112 35666667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+.+ |+..++++++++|...|..|
T Consensus 259 daL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 259 DALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 88777 89999999999999999998
No 185
>PRK04841 transcriptional regulator MalT; Provisional
Probab=36.61 E-value=1.9e+02 Score=33.44 Aligned_cols=100 Identities=6% Similarity=-0.100 Sum_probs=64.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498 73 LSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW 148 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw 148 (566)
-..+...|++++|...+.+.... .|. .....+++.+-..+...|+.++|...+++.....-. .+...
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~---------~~~~~ 568 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE---------QHLEQ 568 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------hcccc
Confidence 33456789999999888877521 111 112334556666778899999999998886542110 00000
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 149 SRPDVSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 149 ~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
.......|..+-..+...|++++|...+++...
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 012345677777778889999999999988755
No 186
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.57 E-value=1.9e+02 Score=27.60 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=19.7
Q ss_pred ccCCCchhHHHHHHHHHHHhhhhcccccccccCCC
Q 047498 376 RVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQ 410 (566)
Q Consensus 376 ~~idp~lp~~~~~~a~a~~~~g~~~n~~~lp~l~q 410 (566)
.++|+...+++. .++..+.+=..++-|+.|.+..
T Consensus 10 ~~l~~~~~~~~~-~~i~Flil~~iL~~~~~kpi~~ 43 (173)
T PRK13460 10 SLLDVNPGLVVW-TLVTFLVVVLVLKKFAWDVILK 43 (173)
T ss_pred CccCCcHhHHHH-HHHHHHHHHHHHHHHhHHHHHH
Confidence 456664444443 3455555555677777776654
No 187
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=36.25 E-value=56 Score=37.38 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHH-HHHh
Q 047498 103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLID-DISR 181 (566)
Q Consensus 103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLe-EM~~ 181 (566)
..|+.+|+...|...++.|..+|-+.++.|+. .|+|+.|++.|.-+|...+ .-|.++|+ -|+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~---------------~h~vyi~~A~~E~~~~~d~-~ta~~ifelGl~~ 461 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV---------------GHHVYIYCAFIEYYATGDR-ATAYNIFELGLLK 461 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC---------------CcceeeeHHHHHHHhcCCc-chHHHHHHHHHHh
Confidence 46899999999999999999999999999874 6999999999999997555 56888887 4555
Q ss_pred CCCCC
Q 047498 182 VGVSP 186 (566)
Q Consensus 182 rGcsP 186 (566)
-|=.|
T Consensus 462 f~d~~ 466 (660)
T COG5107 462 FPDST 466 (660)
T ss_pred CCCch
Confidence 54444
No 188
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.96 E-value=1.5e+02 Score=34.90 Aligned_cols=99 Identities=11% Similarity=0.017 Sum_probs=59.4
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV 155 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT 155 (566)
+-|.++.+.|.-.|+.-.+ -+ .-|.+.-+.+-..+-+.|+.|+|+.+|++-.---.. |.-.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~-IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-----------------n~l~ 559 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE-IN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-----------------NPLC 559 (638)
T ss_pred eeccchhhHHHHHHHhhhc-CC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-----------------Cchh
Confidence 4577888888888877763 11 235555566666677888888998888886633221 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498 156 YTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKV 195 (566)
Q Consensus 156 YNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntL 195 (566)
===-.+-|--.+|.++|++.|++++. +.|++...|--+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ll 597 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALL 597 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 01112334455777788888887765 667554444333
No 189
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.41 E-value=2.5e+02 Score=32.54 Aligned_cols=97 Identities=26% Similarity=0.285 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHHH
Q 047498 83 SEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLVQ 161 (566)
Q Consensus 83 DEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLId 161 (566)
++....+.+..+..|...+..+...|+... .|++..|+..++...... ++..++ .+.... ..++..+|--|++
T Consensus 183 ~ei~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~--~~~It~~~V~~~l--~~~~~~~iF~L~d 256 (614)
T PRK14971 183 ADIVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFT--GGNITYKSVIENL--NILDYDYYFRLTD 256 (614)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhc--cCCccHHHHHHHh--CCCCHHHHHHHHH
Confidence 444555665543334434433344444322 589999999998876432 112444 222221 2467778888998
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 162 SLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 162 GLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
.+.+ ++.++|+.++++|...|..|
T Consensus 257 ai~~-~~~~~al~ll~~Ll~~g~~~ 280 (614)
T PRK14971 257 ALLA-GKVSDSLLLFDEILNKGFDG 280 (614)
T ss_pred HHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 8877 69999999999999999998
No 190
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=35.04 E-value=2.8e+02 Score=32.70 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047498 419 IAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYA 462 (566)
Q Consensus 419 ~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~a 462 (566)
..-||+||.+-|.. .|++.|.+.-.+|...+ +||+||..
T Consensus 175 ~~eKQ~LLE~~d~~-~RL~~l~~lL~~ele~l----~l~~~I~~ 213 (775)
T TIGR00763 175 KDELQEVLETVNIE-KRLKKALELLKKELELL----KLQNKITK 213 (775)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 56789999998754 89999999998888765 47777754
No 191
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.98 E-value=96 Score=29.51 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
.||..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999875
No 192
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=34.90 E-value=1.3e+02 Score=34.71 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=30.5
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHH
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAM 128 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM 128 (566)
.+-|-|+.+||+++|++|.+.....=+....-.||.++.-.+..+++-.++.+=
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344567777777777777521100001223455677777777777777776654
No 193
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.39 E-value=3.1e+02 Score=29.15 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHH
Q 047498 81 DASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSL 159 (566)
Q Consensus 81 rlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTL 159 (566)
..++..+.+.+..+..|...+......++. ++ .|.+..|+.+++.....| .+.+|. .+..... .++......|
T Consensus 179 ~~~el~~~L~~~~~~~g~~i~~~al~~ia~-~s-~G~~R~al~~l~~~~~~~--~~~It~~~v~~~l~--~~~~~~i~~l 252 (363)
T PRK14961 179 SEEKIFNFLKYILIKESIDTDEYALKLIAY-HA-HGSMRDALNLLEHAINLG--KGNINIKNVTDMLG--LLNEKQSFLL 252 (363)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHC--CCCHHHHHHH
Confidence 345556666665443344344444444333 32 588999999998877655 233443 2212212 3566666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 160 VQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 160 IdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
++.+.+ ++.++|+++++++...|..|
T Consensus 253 ~~ai~~-~~~~~~~~~~~~l~~~g~~~ 278 (363)
T PRK14961 253 TDALLK-KDSKKTMLLLNKISSIGIEW 278 (363)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 777655 88999999999999999998
No 194
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.32 E-value=1.3e+02 Score=32.20 Aligned_cols=67 Identities=19% Similarity=0.394 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCCCCCcccccc-eeccchhh-HHH-Hhh--cccCcceeeecccccccceeeeceeeeeee
Q 047498 172 ALRLIDDISRVGVSPGEEVPFGK-VVRCPTCL-IAV-AVA--QPQHGIQIVSCAKCRYKYELVSGDIVSIHS 238 (566)
Q Consensus 172 AlkLLeEM~~rGcsPdDvVTYnt-LI~C~tC~-~A~-aV~--Qpq~GiqlV~c~~cRy~YELfSg~i~s~~s 238 (566)
|++++--.....+.....+.|+. -=.||.|. .++ .++ ...+|...+.|++|..++......++.|.+
T Consensus 163 ALqv~wa~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 163 ALSLYWAQMAQQIPGKARAEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred HHHHHHHHHHhhCCcccccccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 67766655555676546677764 33499886 332 333 346799999999999999999999999986
No 195
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.10 E-value=24 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 162 SLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 162 GLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
.+-+.|-=.||.++|..|..+|-+|||
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 456678899999999999999999963
No 196
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=33.62 E-value=20 Score=32.00 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=44.5
Q ss_pred heeeeehhhhHHHHHHhhhhhHHHHHHHHHHhHHhHHHHHhHh----------hhhchHHHHHhhcCCCC
Q 047498 503 IEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQ----------AEANDEAERLINSQAMP 562 (566)
Q Consensus 503 ieievemd~dv~aae~~~~~~~i~eqi~~l~e~~~l~~~wr~q----------aea~de~erll~s~~~~ 562 (566)
.+++|.+-.|..++|+..-.++=.+..++|++--.+..-||.. ++-|||+.++|++-|.-
T Consensus 5 v~m~v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL~ 74 (91)
T PF02426_consen 5 VRMTVNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLPLF 74 (91)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCCCc
Confidence 4566777777778877765556666777777766666678864 67899999999998864
No 197
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.08 E-value=2.9e+02 Score=33.19 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcC--CC-C--CC-Ccc--
Q 047498 70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSF--DQ-G--LS-ENG-- 140 (566)
Q Consensus 70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG--~~-P--dv-vTY-- 140 (566)
|.|-+.|-.-|+++||.+.+..-.. ..|+ ..+-|-|=+.+-..|++++|.++|..-..-. +. + |. +.|
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 3455566666888888877776652 1122 2244666677777777777777776654321 10 0 00 000
Q ss_pred --cccc---cccc---CCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 141 --TLVD---RWKW---SRPD-VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 141 --aLi~---~~rw---~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
.+.. +.+. +.|+ .-.|+-+=+-|-..|+++.|++.+.+-+. +.|
T Consensus 401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nP 453 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INP 453 (966)
T ss_pred cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCc
Confidence 0000 0000 2576 45788898999999999999999887765 455
No 198
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.06 E-value=6.1e+02 Score=31.45 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=13.7
Q ss_pred Hhhhhhhhhhcc--chhHhHHHHHHHHHHhhhhhh
Q 047498 454 CQLENKIYAVGE--PSYRARKSRVKRVREGLQNSL 486 (566)
Q Consensus 454 ~ql~nk~~avg~--~~y~ar~~rv~~~r~~l~~~l 486 (566)
..+++++..... ..|.+.+...++-.+.+++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~ 413 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERL 413 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333 234444444444444444433
No 199
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=32.81 E-value=78 Score=30.55 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHh-hhhheeeeehhhhHHHHHHhhhhhHHH
Q 047498 448 WMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARI-SSMIEIEIEMDSDVLAAEAVSSAESIS 526 (566)
Q Consensus 448 ~~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~-~~mieievemd~dv~aae~~~~~~~i~ 526 (566)
-.-.||-+|+.++..|-.++|..=..+++. |++....||+...-+.+. .+.|+.+-+.+....-.|.-+....|.
T Consensus 21 lY~e~l~~L~~el~~l~~~t~pe~l~~l~~----l~~~rd~~l~~a~~~~~~~l~~i~~~~~~e~~~a~~e~~~~~~~lr 96 (205)
T PF08598_consen 21 LYRERLAQLQQELEQLQEGTHPEYLRRLQD----LEERRDERLRVAEILREYRLESIEREYEAERQQAEQEYESEKRELR 96 (205)
T ss_dssp HHHHHHHHHHHCHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788899999999988666655555554 455555556555544332 233444444444433334444443344
Q ss_pred HHHHHHHhHHhHHHHHhH
Q 047498 527 EQIQQIMELENLEEKWRL 544 (566)
Q Consensus 527 eqi~~l~e~~~l~~~wr~ 544 (566)
|++ +++++++|+-
T Consensus 97 e~l-----~~~l~ek~~~ 109 (205)
T PF08598_consen 97 ERL-----LEELEEKRRR 109 (205)
T ss_dssp ------------------
T ss_pred HHH-----HHHHHHHHHH
Confidence 333 4566666653
No 200
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.74 E-value=2.7e+02 Score=33.53 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.+.++.+..|...+...+..|+... .|.+..++.+++++.. +...+.+|+ .+...+. ..+.....-||
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia-~~~~~~IT~e~V~allg--~~~~~~I~~li 255 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA-GAGPEGVTYERAVALLG--VTDSALIDEAV 255 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHhc--CCCHHHHHHHH
Confidence 4555566666653334444544445444333 4889999999999774 333445666 2222211 24555555677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+. .|+..+++.++++|...|..|
T Consensus 256 dAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 256 DALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 7776 478999999999999999877
No 201
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.45 E-value=2.5e+02 Score=32.27 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=44.8
Q ss_pred ccccchHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhHhHHHHHHHHHHh
Q 047498 412 PQKSVDTIAIRQQLLSQY----------DLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREG 481 (566)
Q Consensus 412 p~~~v~~~a~~qqll~qy----------~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~ 481 (566)
|.-.|--..++|++=-|- +.+++++.+|. -.+....++|.++.||-.. -+-||=||-...|.
T Consensus 330 PVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~-----Ls~RiLRv~ikqei 401 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVE-----LSHRILRVMIKQEI 401 (508)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 455566777777776652 33344444443 5667788888889998764 56788888888887
Q ss_pred hhhh
Q 047498 482 LQNS 485 (566)
Q Consensus 482 l~~~ 485 (566)
|+.|
T Consensus 402 lr~~ 405 (508)
T KOG3091|consen 402 LRKR 405 (508)
T ss_pred Hhcc
Confidence 7665
No 202
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=32.26 E-value=3.2e+02 Score=27.58 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHHH
Q 047498 83 SEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLVQ 161 (566)
Q Consensus 83 DEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLId 161 (566)
++..+++.++..+.|...+..+...|+... .|++.+++..++.....+ +.+|- .+...+....++ ..-.-|++
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~---~~It~~~v~~~~~~~~~~-~~i~~l~~ 260 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAA---GEITMEAAYEALGDVGTD-EVIESLLD 260 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcC---CCCCHHHHHHHhCCCCCH-HHHHHHHH
Confidence 355666666644334444555555666543 688888888777655221 12333 211111111112 23335666
Q ss_pred HHHhcCCHHHHHHHHHHHH-hCCCCC
Q 047498 162 SLAASLKVSDALRLIDDIS-RVGVSP 186 (566)
Q Consensus 162 GLCKsGRVdEAlkLLeEM~-~rGcsP 186 (566)
.+ ..|++++|++++.+|. ..|.+|
T Consensus 261 ai-~~~~~~~a~~~l~~l~~~~g~~~ 285 (337)
T PRK12402 261 AA-EAGDFTDARKTLDDLLIDEGLSG 285 (337)
T ss_pred HH-HcCCHHHHHHHHHHHHHHcCCCH
Confidence 55 6689999999999997 789988
No 203
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=32.03 E-value=38 Score=29.39 Aligned_cols=60 Identities=7% Similarity=0.062 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcC--ChhHHHHHHHHHHhcCC
Q 047498 71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRG--NTDLALSIFYAMRSSFD 133 (566)
Q Consensus 71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaG--rVDeAlsLF~EM~srG~ 133 (566)
.+|..|...|+++||..-|.++.. +...+ .+ ...+|......+ .-+....++..+.+.|.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~-~~~~~-~v-v~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKL-PEQHH-EV-VKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCC-CcchH-HH-HHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 567888899999999999999863 22222 23 344555555443 34444557777775543
No 204
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.98 E-value=58 Score=26.57 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=23.7
Q ss_pred ChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 101 TVDECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
|-.-.=-+|.||+..|+.++|.+..+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444456789999999999999999988864
No 205
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.45 E-value=95 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHH-HHhhhhcccccccccCCCc
Q 047498 385 FLSVAAVA-SLAVGVTLNNLIFPQLSQL 411 (566)
Q Consensus 385 ~~~~~a~a-~~~~g~~~n~~~lp~l~ql 411 (566)
++.++++. ++..++-.|+ |+++||
T Consensus 5 lll~aviLs~~LLaGCAs~---~kvdqL 29 (85)
T PRK09973 5 FTVGAVVLATCLLSGCVNE---QKVNQL 29 (85)
T ss_pred HHHHHHHHHHHHHHHcCCc---hhHHHH
Confidence 44444444 3344555555 555543
No 206
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=31.31 E-value=7e+02 Score=26.94 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=46.7
Q ss_pred HHHhhhhhhhhhcc-chhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHhhhhheeeeehhhhHHHHHHhhhhh----HHH
Q 047498 452 RMCQLENKIYAVGE-PSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAE----SIS 526 (566)
Q Consensus 452 r~~ql~nk~~avg~-~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~mieievemd~dv~aae~~~~~~----~i~ 526 (566)
+--+.+.++..+|- .-++.|..+....+...++.+ -+|-+.|.. .=+|+.+....|.+-.-+ +++
T Consensus 64 ~~~~~~~~la~~G~g~~~~~r~~~~~~i~~~~~~q~---~~l~~~~~~-------~~~~s~~~y~~~~~~l~~~l~~~l~ 133 (332)
T TIGR01541 64 IRAQNKRQLDRFGLGDKQRERLDARLQIDRTFRKQQ---RDLNKAMTA-------KGLAGSDLYKEQLAAIKAALNEALA 133 (332)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhh-------ccccCHHHHHHHHHHHHHHHHHHHH
Confidence 33466677778887 556666666555554444432 234444432 134556655555543333 333
Q ss_pred HHHHHHHhHHhHHHHHhHhh
Q 047498 527 EQIQQIMELENLEEKWRLQA 546 (566)
Q Consensus 527 eqi~~l~e~~~l~~~wr~qa 546 (566)
+|=+-.-+++.++.+|..-+
T Consensus 134 ~~~~~y~~~d~~q~dw~~G~ 153 (332)
T TIGR01541 134 ELHAYYAAEDALQGDWLAGA 153 (332)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 33344556788888998754
No 207
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.28 E-value=1.9e+02 Score=34.40 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=63.4
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhhch
Q 047498 413 QKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLA--RMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRI 490 (566)
Q Consensus 413 ~~~v~~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~la--r~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~~i 490 (566)
++.-|+-..+++++..-...-..++-+....-.+|+..| -+-+|.+++.+++..- |-+.=+.+-.-.+-+.+..+
T Consensus 360 ~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e---~~e~~k~~~d~~~r~~~~~~ 436 (698)
T KOG0978|consen 360 QKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEE---RSEIRKQALDDAERQIRQVE 436 (698)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHhHHHHH
Confidence 445567777777777644433333333344444444333 3556667776655431 11111122222233333667
Q ss_pred hhhhhHHHhhhhhe-eeeehhhhHHHHHHhhhhhHHHHHHHHHHh
Q 047498 491 ELIDSYARISSMIE-IEIEMDSDVLAAEAVSSAESISEQIQQIME 534 (566)
Q Consensus 491 el~~~ya~~~~mie-ievemd~dv~aae~~~~~~~i~eqi~~l~e 534 (566)
++++...|...|-. +.+||++- -++.+.++|||++|++
T Consensus 437 ~~~e~Lqk~~~~~k~ll~e~~t~------gsA~ed~Qeqn~kL~~ 475 (698)
T KOG0978|consen 437 ELSEELQKKEKNFKCLLSEMETI------GSAFEDMQEQNQKLLQ 475 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 78888888766665 56677653 3556789999999975
No 208
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.26 E-value=3.5e+02 Score=30.72 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCCcc-ccccccccCCCChHhHHH
Q 047498 81 DASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFD-QGLSENG-TLVDRWKWSRPDVSVYTS 158 (566)
Q Consensus 81 rlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~-~PdvvTY-aLi~~~rw~~PDVVTYNT 158 (566)
..++..+.+....+..|...+......|+.. -.|.+..|+.+++.....+- ..+.+|. .+..... .++-...--
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg--~~~~~~if~ 263 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLG--LVDSSVIIE 263 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHC--CCCHHHHHH
Confidence 3456667777665434544555555555543 35899999999998865432 2234454 2221111 356666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 159 LVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 159 LIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
|++.+-+ |+.++|+++++++...|..|
T Consensus 264 L~~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 264 FVEYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 7887766 99999999999999999999
No 209
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=30.98 E-value=4.7e+02 Score=30.55 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=21.0
Q ss_pred HhhhhhHHHHHHHHHHhHHhHHHHHhHhhhhchHHHHHhhc
Q 047498 518 AVSSAESISEQIQQIMELENLEEKWRLQAEANDEAERLINS 558 (566)
Q Consensus 518 ~~~~~~~i~eqi~~l~e~~~l~~~wr~qaea~de~erll~s 558 (566)
..++...+++++++|. .-.++|++ .|+|.||+-
T Consensus 397 ~~~~~~~L~~~~~~l~---~~r~dW~l-----aEae~Ll~l 429 (656)
T PRK06975 397 AQSAQQALEQQYQDLS---RNRDDWMI-----AEVEQMLSS 429 (656)
T ss_pred HHHHHHHHHHHHHHHh---cChhhhHH-----HHHHHHHHH
Confidence 4444555677776654 33478987 378888764
No 210
>PLN02789 farnesyltranstransferase
Probab=30.40 E-value=4e+02 Score=28.25 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=25.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
|.-.|+-.-..+.+.|++++|++.+++|++....-
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 44455555566677788999999999998876544
No 211
>PLN03025 replication factor C subunit; Provisional
Probab=29.90 E-value=4.2e+02 Score=27.40 Aligned_cols=98 Identities=18% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
-++..+.+.++.+..|...+......|+.. -.|++..|+..++.... |- +.++. .+... .+ .|.--.-..++
T Consensus 160 ~~~l~~~L~~i~~~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~-~~--~~i~~~~v~~~-~~-~~~~~~i~~~i 232 (319)
T PLN03025 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHS-GF--GFVNQENVFKV-CD-QPHPLHVKNIV 232 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHh-cC--CCCCHHHHHHH-cC-CCCHHHHHHHH
Confidence 356666677765434555556667777764 35899999999885542 21 12232 11111 11 23333444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsPd 187 (566)
+.+ ..+++++|++.+.+|...|.+|.
T Consensus 233 ~~~-~~~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 233 RNC-LKGKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 554 46899999999999999999993
No 212
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=29.50 E-value=24 Score=31.65 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=42.0
Q ss_pred heeeeehhhhHHHHHHhhhhhHHHHHHHHHHhHHhHHHHHhH----------hhhhchHHHHHhhcCCCC
Q 047498 503 IEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRL----------QAEANDEAERLINSQAMP 562 (566)
Q Consensus 503 ieievemd~dv~aae~~~~~~~i~eqi~~l~e~~~l~~~wr~----------qaea~de~erll~s~~~~ 562 (566)
.++.|+...|.+++++..--++=.+.-|+|-.=-.+..=||+ .+|-|||...+|++=|.-
T Consensus 4 V~m~V~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~sLPL~ 73 (90)
T TIGR03221 4 VRMDVNLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLSGLPLF 73 (90)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHHhCCCC
Confidence 567788888888888876555444555554443334445776 688999999999998864
No 213
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=29.35 E-value=1.1e+02 Score=34.47 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=43.9
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 78 GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 78 KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
..|++++|...|++..+. .|+...|+.+-+.++..|+.++|.+.|++-..
T Consensus 432 ~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 369999999999999852 37889999999999999999999999987553
No 214
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.33 E-value=3.4e+02 Score=33.03 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.|.++.+..|...+......|+.. -.|.+.+|+.+++.....+- +.+++ .+...+. ..|.-.+.-|+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~--~~It~~~V~~~LG--~~d~~~i~~ll 253 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSA--NEVTETAVSGMLG--ALDQTYMVRLL 253 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHHhC--CCCHHHHHHHH
Confidence 455566677665433333344333333332 26899999999888665432 23444 2222222 36666677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+.+ |+..+++.++++|..+|..+
T Consensus 254 ~aL~~-~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 254 DALAA-GDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 85555 99999999999999999876
No 215
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.88 E-value=1.5e+02 Score=26.67 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498 156 YTSLVQSLAASLKVSDALRLIDDISRV 182 (566)
Q Consensus 156 YNTLIdGLCKsGRVdEAlkLLeEM~~r 182 (566)
|+.|+.=|-..|+-++|++++.+....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 999999999999999999999999883
No 216
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.70 E-value=8.1e+02 Score=26.85 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=5.3
Q ss_pred hHHhHHHHHh
Q 047498 534 ELENLEEKWR 543 (566)
Q Consensus 534 e~~~l~~~wr 543 (566)
+++++.++|+
T Consensus 277 ~~~~l~~~~~ 286 (457)
T TIGR01000 277 KLAQLKEQQL 286 (457)
T ss_pred HHHHHHHHHH
Confidence 3445555665
No 217
>PRK09109 motC flagellar motor protein; Reviewed
Probab=28.31 E-value=5.2e+02 Score=26.56 Aligned_cols=34 Identities=6% Similarity=0.110 Sum_probs=24.4
Q ss_pred cCCcccccCCCchhHHHHHHHHHHHhhhhccccc
Q 047498 370 TGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNL 403 (566)
Q Consensus 370 ~~daas~~idp~lp~~~~~~a~a~~~~g~~~n~~ 403 (566)
.|+-...|+||+==.++.+|++++..++...+.+
T Consensus 23 ~gg~~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~ 56 (246)
T PRK09109 23 EGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVF 56 (246)
T ss_pred cCCChHHHhhHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3666888999877777777777777766655443
No 218
>PF14444 S1-like: S1-like
Probab=28.04 E-value=47 Score=27.80 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=16.9
Q ss_pred ccCccccceeEEeecCCCccccccCccccc
Q 047498 289 DLPAQVGERITVSSAAPSNVYREVGPFKFS 318 (566)
Q Consensus 289 ~~paq~gervtv~~a~~~n~~r~~g~~~~~ 318 (566)
.+| |+|+||++.-.--.|. |||-.
T Consensus 32 ~~P-~vGdrV~v~A~~n~~~-----~~kW~ 55 (58)
T PF14444_consen 32 NVP-KVGDRVLVEAIYNPNM-----PFKWN 55 (58)
T ss_pred CCC-ccCCEEEEEEEeCCCC-----Cccce
Confidence 478 9999999876544443 66654
No 219
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.54 E-value=54 Score=31.65 Aligned_cols=34 Identities=6% Similarity=0.134 Sum_probs=27.0
Q ss_pred HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHH
Q 047498 76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAA 112 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~Gl 112 (566)
+-+.|.-.+|+.+|++|.+ .|..|| +++.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~-~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLE-RGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHh-CCCCCc--cHHHHHHHh
Confidence 4567888899999999997 466788 788888753
No 220
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=27.09 E-value=1.4e+02 Score=31.44 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV- 182 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r- 182 (566)
|-+..|..+.+.+.+++|+.+.++=.+... -|.-+--.|++=||-.|.+++|.-=++-.-+-
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-----------------tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-----------------TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-----------------ccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 445667777777777777777776655432 35555566777777777777776544433221
Q ss_pred -CCCCCCcccccceeccc
Q 047498 183 -GVSPGEEVPFGKVVRCP 199 (566)
Q Consensus 183 -GcsPdDvVTYntLI~C~ 199 (566)
...+ ..-.|-.+|+|.
T Consensus 66 p~~t~-~a~lyr~lir~e 82 (273)
T COG4455 66 PQDTV-GASLYRHLIRCE 82 (273)
T ss_pred cccch-HHHHHHHHHHHH
Confidence 1222 244566666653
No 221
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.06 E-value=6.2e+02 Score=24.97 Aligned_cols=16 Identities=44% Similarity=0.545 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHhHHhH
Q 047498 523 ESISEQIQQIMELENL 538 (566)
Q Consensus 523 ~~i~eqi~~l~e~~~l 538 (566)
+.+++|.+.|.++.+|
T Consensus 131 ~~~~~~~~~Le~iAgl 146 (201)
T PF12072_consen 131 ELIEEQQQELEEIAGL 146 (201)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3466666677666554
No 222
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.91 E-value=3.7e+02 Score=30.86 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=73.1
Q ss_pred hhHHHHH--HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHH-HHhcCCC----------
Q 047498 68 VEEELLS--RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYA-MRSSFDQ---------- 134 (566)
Q Consensus 68 ~~~aLIr--GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~E-M~srG~~---------- 134 (566)
...-+++ .|-.+||+++|.=-|++-..- ...+...|--||++|.-.|++.+|+-+-++ |+..|-.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcce
Confidence 3334444 366799999999999988631 235788999999999999999999887665 3322211
Q ss_pred ---CCCCcc----cc-ccccccCCCChHhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498 135 ---GLSENG----TL-VDRWKWSRPDVSVYTSLVQSLA-ASLKVSDALRLIDDISRVGVSPGEEVPFGKV 195 (566)
Q Consensus 135 ---PdvvTY----aL-i~~~rw~~PDVVTYNTLIdGLC-KsGRVdEAlkLLeEM~~rGcsPdDvVTYntL 195 (566)
||.++. .+ ..+++ ..|+-.---.++--|| ..|+-+|++.+++.-.. ..| |++-.++|
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~-~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~-D~~LH~~L 477 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLK-INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFP-DVNLHNHL 477 (564)
T ss_pred eeccCchhHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hcc-ccHHHHHH
Confidence 222221 00 11112 2565433333333343 56788888888876554 345 44444443
No 223
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=26.75 E-value=3.1e+02 Score=25.17 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498 111 AAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDISRVG 183 (566)
Q Consensus 111 GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG 183 (566)
.+=..|+.++|+.+|++-...|.. .++ .-.|=-|=..|-..|+.++|..+|++....-
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~---------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLS---------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445679999999999999988873 111 1122234446777899999999999887653
No 224
>PRK04841 transcriptional regulator MalT; Provisional
Probab=26.55 E-value=3.5e+02 Score=31.27 Aligned_cols=95 Identities=9% Similarity=-0.034 Sum_probs=64.7
Q ss_pred HHcCCCHHHHHHHHHHHhhc-CCCCc--ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 76 VSGAKDASEVLEIVAESSKR-SGGVL--TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 76 LCKAGrlDEAleLL~EM~er-~Gg~P--DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
+...|++++|...+++..+. ....+ -..+++.+-..+...|+.++|...|++.....-. .....+-
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~-----------~g~~~~~ 530 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ-----------HDVYHYA 530 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----------hcchHHH
Confidence 34699999999999887531 11111 1234566777788899999999999988643110 0000123
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISR 181 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~ 181 (566)
+.+++.+-..+...|++++|...+++...
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667777788899999999999887654
No 225
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.42 E-value=8.5e+02 Score=26.82 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=44.1
Q ss_pred ccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc--hhHhHHHHHHHHHHhhhhh
Q 047498 412 PQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEP--SYRARKSRVKRVREGLQNS 485 (566)
Q Consensus 412 p~~~v~~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~~--~y~ar~~rv~~~r~~l~~~ 485 (566)
|++....+.-++.|=+|++.|...+.++.+.-.+--....++-.+++++...=+. +...++.+++.-.+.|++.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666667888888888888888877766664444556666666666554332 2223344444444444444
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=26.40 E-value=3e+02 Score=28.94 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=54.8
Q ss_pred HcCCCHHHHHHHHHHHhhc-CCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498 77 SGAKDASEVLEIVAESSKR-SGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV 155 (566)
Q Consensus 77 CKAGrlDEAleLL~EM~er-~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT 155 (566)
-+.|++++|.+.|+.+..+ +++.-..-+=-.++-++.|.|+.++|+..+++-.+.-.. +||+ -
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---------------~~n~-d 108 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---------------HPNA-D 108 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------------CCCh-h
Confidence 4689999999999999743 222333444567889999999999999999997655332 3443 3
Q ss_pred HHHHHHHHHhcCCH
Q 047498 156 YTSLVQSLAASLKV 169 (566)
Q Consensus 156 YNTLIdGLCKsGRV 169 (566)
|-.=|.||++.-.+
T Consensus 109 Y~~YlkgLs~~~~i 122 (254)
T COG4105 109 YAYYLKGLSYFFQI 122 (254)
T ss_pred HHHHHHHHHHhccC
Confidence 66667777755443
No 227
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=26.05 E-value=4e+02 Score=32.22 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=84.3
Q ss_pred CCCch-hhHHhhhhhccccccccccccccccccccccc---hhHHH-----------------HHHHHcCCCHHHHHHHH
Q 047498 31 PNNNT-SALLSFLLAAKKATRLRGFRIEASLSESENGV---VEEEL-----------------LSRVSGAKDASEVLEIV 89 (566)
Q Consensus 31 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~aL-----------------IrGLCKAGrlDEAleLL 89 (566)
|.+.| .+.+.+++..+|..++ +-..|--+|-+++. |+..| .....++||+.+|..++
T Consensus 530 ~~~~carAVya~alqvfp~k~s--lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 530 PAIECARAVYAHALQVFPCKKS--LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred chHHHHHHHHHHHHhhccchhH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 55667 6777777766665543 33334334444433 33322 24456789999999999
Q ss_pred HHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCH
Q 047498 90 AESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKV 169 (566)
Q Consensus 90 ~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRV 169 (566)
.+..+ ... -+...+=+-+.=.......++|..+|.+-+..+ |..-.|.-=++-.--.|.+
T Consensus 608 ~~af~-~~p-nseeiwlaavKle~en~e~eraR~llakar~~s------------------gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 608 DQAFE-ANP-NSEEIWLAAVKLEFENDELERARDLLAKARSIS------------------GTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHH-hCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccC------------------CcchhhHHHhHHHHHhhhH
Confidence 99875 222 256667777888889999999999999988653 3333333333444445889
Q ss_pred HHHHHHHHHHHh
Q 047498 170 SDALRLIDDISR 181 (566)
Q Consensus 170 dEAlkLLeEM~~ 181 (566)
++|++++++-.+
T Consensus 668 eeA~rllEe~lk 679 (913)
T KOG0495|consen 668 EEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHHHH
Confidence 999999977655
No 228
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.76 E-value=3.1e+02 Score=27.33 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=29.6
Q ss_pred hhhHHHHHHHhcCCc----ccccCCCchhH--HHHHHHHHHHhhhhcccccccccCC
Q 047498 359 VSLVPLLAVLATGDA----ASRVIDPSLPQ--FLSVAAVASLAVGVTLNNLIFPQLS 409 (566)
Q Consensus 359 ~~~~p~~~~la~~da----as~~idp~lp~--~~~~~a~a~~~~g~~~n~~~lp~l~ 409 (566)
++++-++++-.+||. +..+||+-.|- .+....+..+.+=..++-|+.+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~ 74 (205)
T PRK06231 18 FLIISLFLVSCTENVEELKSKSIINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQ 74 (205)
T ss_pred HHHHHHHHHHccCChhhcCHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667778883 55666666663 2334445555555566666665543
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=25.65 E-value=1.2e+02 Score=22.27 Aligned_cols=29 Identities=14% Similarity=-0.037 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498 104 ECCLIINAAIDRGNTDLALSIFYAMRSSF 132 (566)
Q Consensus 104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG 132 (566)
++..+=..|-..|+.++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46677788999999999999999998763
No 230
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.58 E-value=1e+03 Score=30.79 Aligned_cols=136 Identities=24% Similarity=0.299 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhcc------chhHhHHHHHHHHHHhhhhh
Q 047498 413 QKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWML-ARMCQLENKIYAVGE------PSYRARKSRVKRVREGLQNS 485 (566)
Q Consensus 413 ~~~v~~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~l-ar~~ql~nk~~avg~------~~y~ar~~rv~~~r~~l~~~ 485 (566)
|-...-+...||+|.+-+.--.-.+.+...+.+-+.-| ++|-.|.+|..--+. .+-.+=+.+-.+|+++++ -
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~ 1665 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-I 1665 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred hhhchhhhhhHHHhhhhheeeeehhhhHHHH--------HHhhhhhHHHHHHHHHHhHH--------hHHHHHhHhhhhc
Q 047498 486 LRGRIELIDSYARISSMIEIEIEMDSDVLAA--------EAVSSAESISEQIQQIMELE--------NLEEKWRLQAEAN 549 (566)
Q Consensus 486 l~~~iel~~~ya~~~~mieievemd~dv~aa--------e~~~~~~~i~eqi~~l~e~~--------~l~~~wr~qaea~ 549 (566)
|....|+.+.. +|-.|.-.+-|- |+..-...-.+.+++|.+|| -|+.+=..-+-=|
T Consensus 1666 lq~~~~~~~~l--------~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le 1737 (1758)
T KOG0994|consen 1666 LQKYYELVDRL--------LEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLE 1737 (1758)
T ss_pred HHHHHHHHHHH--------HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q ss_pred hHHHHHhh
Q 047498 550 DEAERLIN 557 (566)
Q Consensus 550 de~erll~ 557 (566)
.|+|++|.
T Consensus 1738 ~r~~~vl~ 1745 (1758)
T KOG0994|consen 1738 KRVESVLD 1745 (1758)
T ss_pred HHHHHHHH
No 231
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.56 E-value=2.2e+02 Score=34.54 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=45.2
Q ss_pred hhHHHHHHHHc--CCCHHHHHHHHHHHhhcCC------------CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047498 68 VEEELLSRVSG--AKDASEVLEIVAESSKRSG------------GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFD 133 (566)
Q Consensus 68 ~~~aLIrGLCK--AGrlDEAleLL~EM~er~G------------g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~ 133 (566)
+|..-++-+++ .|++++|+.++++.....+ +.+|...+..|++ .+..|+.+++++++++|..+|+
T Consensus 198 id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~-aL~~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 198 FEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLD-ALAAGDGPEILAVADEMALRSL 276 (830)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCC
Confidence 55555555544 6899999999876542111 2344444555666 4555999999999999999988
Q ss_pred CC
Q 047498 134 QG 135 (566)
Q Consensus 134 ~P 135 (566)
..
T Consensus 277 ~~ 278 (830)
T PRK07003 277 SF 278 (830)
T ss_pred CH
Confidence 53
No 232
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.28 E-value=7.3e+02 Score=25.55 Aligned_cols=19 Identities=16% Similarity=0.594 Sum_probs=13.0
Q ss_pred chhHhHHHHHHHHHHhhhh
Q 047498 466 PSYRARKSRVKRVREGLQN 484 (566)
Q Consensus 466 ~~y~ar~~rv~~~r~~l~~ 484 (566)
|.|......++.++..+++
T Consensus 182 p~~~~~~~~~~~~~~~l~~ 200 (301)
T PF14362_consen 182 PRYKEKRAQLDAAQAELDT 200 (301)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 7787777777777665544
No 233
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.17 E-value=2.3e+02 Score=22.76 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=47.9
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV 153 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV 153 (566)
.-.|+.|+++-...+++.- ...+. .++.+.-.|..|+. ++++.+.+.|..++...
T Consensus 2 ~~A~~~~~~~~~~~ll~~~-----~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~-------------- 56 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKG-----ADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQD-------------- 56 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTT-----STTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BS--------------
T ss_pred HHHHHcCCHHHHHHHHHCc-----CCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccC--------------
Confidence 3456778877666666622 11232 44577777788885 45555556777422221
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd 187 (566)
..-.|.++--|..|.. ++++.+.+.|+.++
T Consensus 57 ~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 57 KNGNTALHYAAENGNL----EIVKLLLEHGADVN 86 (89)
T ss_dssp TTSSBHHHHHHHTTHH----HHHHHHHHTTT-TT
T ss_pred CCCCCHHHHHHHcCCH----HHHHHHHHcCCCCC
Confidence 0122334445677764 46677778898883
No 234
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.07 E-value=7.2e+02 Score=25.07 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=6.1
Q ss_pred HHHHHHHHHhH
Q 047498 525 ISEQIQQIMEL 535 (566)
Q Consensus 525 i~eqi~~l~e~ 535 (566)
..|++.+|||.
T Consensus 147 ~~ek~r~vlea 157 (251)
T PF11932_consen 147 LAEKFRRVLEA 157 (251)
T ss_pred HHHHHHHHHHH
Confidence 44555566554
No 235
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=25.06 E-value=44 Score=27.78 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=21.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 162 SLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 162 GLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
-.|+.+.++++...+.++...|+++.|
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~G~s~~~ 39 (89)
T PF08542_consen 13 ESCLNGDFKEARKKLYELLVEGYSASD 39 (89)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCCHHH
Confidence 456667999999999999999999954
No 236
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=24.74 E-value=54 Score=34.14 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhhhhcccccccccCCCccccc
Q 047498 382 LPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKS 415 (566)
Q Consensus 382 lp~~~~~~a~a~~~~g~~~n~~~lp~l~qlp~~~ 415 (566)
++.++.+.+++.+++|.++-.++.|++++||-..
T Consensus 3 ~~~~l~~lG~~llv~a~llp~~v~~~l~~lPld~ 36 (301)
T PF11271_consen 3 LSAVLLGLGVFLLVAAILLPTYVVPRLAKLPLDL 36 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Confidence 4667777778999999999999999999999653
No 237
>COG1848 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=24.60 E-value=5.1e+02 Score=23.17 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=42.9
Q ss_pred hh-HHHHHHHHcC-CCHHHHHHHHHHHhhcC-CCCcChhhhHHHHHHHHhcC---ChhHHHHHHHH
Q 047498 68 VE-EELLSRVSGA-KDASEVLEIVAESSKRS-GGVLTVDECCLIINAAIDRG---NTDLALSIFYA 127 (566)
Q Consensus 68 ~~-~aLIrGLCKA-GrlDEAleLL~EM~er~-Gg~PDvvTYNsLI~GlCKaG---rVDeAlsLF~E 127 (566)
+| |.+|.-+... +..++|.+++....... ...-+..++..++..+.+.+ ...++.+.+++
T Consensus 4 ~Dtnvlv~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~e~~~v~~~~~~~~~~~~~~~~~~~ 69 (140)
T COG1848 4 IDTNVLVYALFRDHPHHDRARELLERLEAGDIRVYTPELVLAELLRVLTRRRRPLSLAEAIEVVAA 69 (140)
T ss_pred eehHHHHHHHHccChhHHHHHHHHHHHhcCCCceeecHHHHHHHHHHHhhcccCcCHHHHHHHHHH
Confidence 56 6778777774 56789999999886311 22456677899999999975 66666666653
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=24.31 E-value=1.7e+02 Score=33.76 Aligned_cols=73 Identities=12% Similarity=0.242 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498 108 IINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG 187 (566)
Q Consensus 108 LI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd 187 (566)
|=.++-|.|+.++|++.|++|.+..-. .-+.-.+-.||..|-..++..|+..++.+-.+-..+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~---------------~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPN---------------LDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCc---------------cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 445667889999999999999754210 11334566799999999999999999998643322221
Q ss_pred Ccccccce
Q 047498 188 EEVPFGKV 195 (566)
Q Consensus 188 DvVTYntL 195 (566)
-.+.||.-
T Consensus 330 Ati~YTaA 337 (539)
T PF04184_consen 330 ATICYTAA 337 (539)
T ss_pred HHHHHHHH
Confidence 24555553
No 239
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.26 E-value=5.7e+02 Score=25.55 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred chhHHHHHHHH-cCCCHHHHHHHHHHHhhcCCC---CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccc
Q 047498 67 VVEEELLSRVS-GAKDASEVLEIVAESSKRSGG---VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTL 142 (566)
Q Consensus 67 ~~~~aLIrGLC-KAGrlDEAleLL~EM~er~Gg---~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaL 142 (566)
.+...++...| ...-.++|.++|++....... ..+.....++++...+.|..+. ++.+.++-..
T Consensus 130 ~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~-~~~l~~~~~~----------- 197 (324)
T PF11838_consen 130 LLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEE-WDFLWELYKN----------- 197 (324)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHH-HHHHHHHHHT-----------
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhh-HHHHHHHHhc-----------
Confidence 35566677778 222367888899998752122 3355566777778888887555 4433333332
Q ss_pred ccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCC
Q 047498 143 VDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG-VSPGE 188 (566)
Q Consensus 143 i~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG-csPdD 188 (566)
.++..-.+.++.+|+-...-+--.++++.....+ +.+.|
T Consensus 198 -------~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 198 -------STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD 237 (324)
T ss_dssp -------TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT
T ss_pred -------cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH
Confidence 3678888999999999999988889999888865 77754
No 240
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=24.22 E-value=2.2e+02 Score=28.86 Aligned_cols=31 Identities=6% Similarity=0.159 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498 154 SVYTSLVQSLAASLKVSDALRLIDDISRVGV 184 (566)
Q Consensus 154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc 184 (566)
-.+.-+.+-+.+.|+.++|+++|+++...-.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 4567777889999999999999999987654
No 241
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.21 E-value=5.6e+02 Score=29.77 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
.++..+.+.+..+..|...+......++. ...|.+..|+.+++.....+- .+.+|+ .+..... ..+......|+
T Consensus 179 ~~~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~-~~~It~~~v~~llg--~~~~~~i~~lv 253 (584)
T PRK14952 179 PRTMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAA-DTHVTYQRALGLLG--ATDVALIDDAV 253 (584)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccC-CCCcCHHHHHHHHC--CCCHHHHHHHH
Confidence 34555566665443344455555555533 445889999999999876432 445666 2222211 24555555677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+ ..++..+|++++++|...|..|
T Consensus 254 ~al-~~~d~~~al~~l~~l~~~g~d~ 278 (584)
T PRK14952 254 DAL-AADDAAALFGAIESVIDAGHDP 278 (584)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 755 4589999999999999999988
No 242
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.99 E-value=3e+02 Score=23.82 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHH
Q 047498 106 CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSD 171 (566)
Q Consensus 106 NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdE 171 (566)
..+|..|...|++++|..-|.++......++.+...+..+..--.-..--|..|+..||+.+.+..
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~ 71 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVIST 71 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCH
Confidence 457788888899999999998887554444444443333321112345567788888887776543
No 243
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.92 E-value=1.9e+02 Score=32.17 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=71.8
Q ss_pred hhHHH--HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhh-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccc
Q 047498 68 VEEEL--LSRVSGAKDASEVLEIVAESSKRSGGVLTVDEC-CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVD 144 (566)
Q Consensus 68 ~~~aL--IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTY-NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~ 144 (566)
.|+-| =+-|-+-...+.|+.+|.+-.+. .|-.||| .-+-.-+=.-|+.++|+++|++..+.--
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~----------- 321 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP----------- 321 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-----------
Confidence 56533 36788899999999999999852 3666776 3333444556889999999998875421
Q ss_pred ccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498 145 RWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 145 ~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD 188 (566)
-||-.-..+--|+.=.++.+-|++.++++...|+..++
T Consensus 322 ------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 322 ------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred ------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 23333344444666679999999999999999987633
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=23.82 E-value=5.5e+02 Score=27.07 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHhhcCCC--CcChhhhHHHHHHHHhcCCh----hHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498 81 DASEVLEIVAESSKRSGG--VLTVDECCLIINAAIDRGNT----DLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS 154 (566)
Q Consensus 81 rlDEAleLL~EM~er~Gg--~PDvvTYNsLI~GlCKaGrV----DeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV 154 (566)
.+..|.++++.|++.-.. .++-+.|.+|+.+ ..+.+ +..-..|+.+...|.. +-|-.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~---------------kgn~L 180 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFK---------------KGNDL 180 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCC---------------CCcHH
Confidence 345677888888753222 5666677777766 33332 4455677777776664 33444
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCC
Q 047498 155 VYTSLVQSLAASL---KVSDALRLIDDISRVGVSPGE 188 (566)
Q Consensus 155 TYNTLIdGLCKsG---RVdEAlkLLeEM~~rGcsPdD 188 (566)
-.-+-|-.||..- ++..+.++++.+.++||+++.
T Consensus 181 Q~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 181 QFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 4444444554432 266788999999999999854
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=1.6e+02 Score=35.38 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498 73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD 152 (566)
Q Consensus 73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD 152 (566)
|.+|.+.+++++-.++=+.+.. .+=|--.+..+.|+|+.++|.+.+.+.. |
T Consensus 722 ~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~--~-------------------- 772 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVG--G-------------------- 772 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccC--C--------------------
Confidence 4667777777776666555541 2346667777788888888877774432 1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDD 178 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeE 178 (566)
|.-.++.|-+.|.+.+|.++=-+
T Consensus 773 ---l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 773 ---LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---hHHHHHHHHHhccHHHHHHHHHH
Confidence 22677888888888888776443
No 246
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=23.32 E-value=4e+02 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.331 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhhhhhhcc
Q 047498 429 YDLLQSRIKDLKEAAE--------KEVWMLARMCQLENKIYAVGE 465 (566)
Q Consensus 429 y~~l~~r~~~l~~~~~--------~~v~~lar~~ql~nk~~avg~ 465 (566)
-+.|+.||++|-...- +..-+...|+..+.++.+.++
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s 51 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAAS 51 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHc
Confidence 3567777777755441 122345666666666655433
No 247
>PRK15396 murein lipoprotein; Provisional
Probab=23.30 E-value=1.6e+02 Score=25.89 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=3.2
Q ss_pred hhhcccc
Q 047498 396 VGVTLNN 402 (566)
Q Consensus 396 ~g~~~n~ 402 (566)
.++-.|+
T Consensus 18 LaGCAs~ 24 (78)
T PRK15396 18 LAGCSSN 24 (78)
T ss_pred HHHcCCc
Confidence 3444454
No 248
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=23.23 E-value=5.9e+02 Score=28.78 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=13.3
Q ss_pred HHHHHHHHHhHHhHH-HHHhH
Q 047498 525 ISEQIQQIMELENLE-EKWRL 544 (566)
Q Consensus 525 i~eqi~~l~e~~~l~-~~wr~ 544 (566)
.++|-||+..+|-++ ..||-
T Consensus 367 l~qq~qqv~Q~e~~~na~a~~ 387 (455)
T KOG3850|consen 367 LQQQQQQVVQLEGLENAVARR 387 (455)
T ss_pred HHHHHHHHHHHHhhhhccHHH
Confidence 456666777777777 36763
No 249
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=23.03 E-value=2.6e+02 Score=33.39 Aligned_cols=105 Identities=25% Similarity=0.371 Sum_probs=61.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhh-----hhhchhhhh
Q 047498 420 AIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNS-----LRGRIELID 494 (566)
Q Consensus 420 a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~-----l~~~iel~~ 494 (566)
.-||+||.+-|. ..|++-|.+.-.+|..++ ++|+||.. ++++.+++. |+.+++-
T Consensus 178 ~eKQ~LLE~~d~-~eRLe~Ll~lL~~Eleil----~l~~~I~~--------------~v~~~~~k~q~e~~lreq~~~-- 236 (784)
T PRK10787 178 ADKQSVLEMSDV-NERLEYLMAMMESEIDLL----QVEKRIRN--------------RVKKQMEKSQREYYLNEQMKA-- 236 (784)
T ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHHHHHHH----HHHHHHHH--------------HHHHHHhhhhhhhcchhhhhh--
Confidence 568999988775 488999988888887664 48888875 555666554 3333332
Q ss_pred hHHHhhhhheeeeehhhhHHHHHHhhhhhHHHHHHHHHHhHHhHHHHHhHhhhhchHHHHHhhcCCCCCC
Q 047498 495 SYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAERLINSQAMPTE 564 (566)
Q Consensus 495 ~ya~~~~mieievemd~dv~aae~~~~~~~i~eqi~~l~e~~~l~~~wr~qaea~de~erll~s~~~~~~ 564 (566)
|.-|...+- +-....+.+.++|+.+- +-+ ....++..|.+||=+..|..+|
T Consensus 237 ----------i~~elg~~~---~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~e~~~~~~~~~~~~e 287 (784)
T PRK10787 237 ----------IQKELGEMD---DAPDENEALKRKIDAAK----MPK--EAKEKAEAELQKLKMMSPMSAE 287 (784)
T ss_pred ----------hcccccCCC---cchhHHHHHHHHHHhcC----CCH--HHHHHHHHHHHHHHhCCCCCch
Confidence 333332210 00111223344433221 111 2445678899999887777665
No 250
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=22.88 E-value=8.3e+02 Score=27.41 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=9.5
Q ss_pred HHHHhHhhhhchHHHHHhh
Q 047498 539 EEKWRLQAEANDEAERLIN 557 (566)
Q Consensus 539 ~~~wr~qaea~de~erll~ 557 (566)
-.+|.+ +|+|+||+
T Consensus 128 ~~dWll-----aEad~Ll~ 141 (391)
T COG2959 128 RKDWLL-----AEADFLLK 141 (391)
T ss_pred hhhHHH-----HHHHHHHH
Confidence 347876 57777775
No 251
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.87 E-value=1e+03 Score=28.07 Aligned_cols=88 Identities=24% Similarity=0.344 Sum_probs=45.7
Q ss_pred HHHhhhhhhhhhccchhHhHHHHHHH-HHHhhhhhhhhchhhhhhHHHhhhhheeeeehhhhHHHHHHhhhhhHHHHHHH
Q 047498 452 RMCQLENKIYAVGEPSYRARKSRVKR-VREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQ 530 (566)
Q Consensus 452 r~~ql~nk~~avg~~~y~ar~~rv~~-~r~~l~~~l~~~iel~~~ya~~~~mieievemd~dv~aae~~~~~~~i~eqi~ 530 (566)
.+-.|+|.|.....|.+.+--+-+.. -.+.++ .|++++|-+. .++-...+ +.|+.+. -+.||=+
T Consensus 58 sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~-~L~kElE~L~--~qlqaqv~-~ne~Ls~-----------L~~EqEe 122 (617)
T PF15070_consen 58 SLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAE-HLRKELESLE--EQLQAQVE-NNEQLSR-----------LNQEQEE 122 (617)
T ss_pred HHHHHHHhhcccCCccccccchHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHH-HHHHHHH-----------HHHHHHH
Confidence 45568888888888777665554432 222222 2444443333 22211111 1111111 1467888
Q ss_pred HHHhHHhHHHHHhHhhhhchHHHHHhh
Q 047498 531 QIMELENLEEKWRLQAEANDEAERLIN 557 (566)
Q Consensus 531 ~l~e~~~l~~~wr~qaea~de~erll~ 557 (566)
+|.|+|.--++|+-+.+ +..+||.
T Consensus 123 rL~ELE~~le~~~e~~~---D~~kLLe 146 (617)
T PF15070_consen 123 RLAELEEELERLQEQQE---DRQKLLE 146 (617)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 88888877777876554 3455553
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.84 E-value=3.7e+02 Score=23.78 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 047498 102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLID 177 (566)
Q Consensus 102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLe 177 (566)
......+|..|-+.|.....+.+++.+...+. .+...+|.||.-+|+..+ .+.++.|.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-----------------~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-----------------ENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-----------------cchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 34467899999999999999999999987764 466689999999998754 44445554
No 253
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=22.79 E-value=2.7e+02 Score=32.71 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=52.6
Q ss_pred CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHH-
Q 047498 99 VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLID- 177 (566)
Q Consensus 99 ~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLe- 177 (566)
.|+. +|+-+|+..-|.-.++.|..+|.+-++.+.. .-+|+.|++++.-+|... -+-|.++|+
T Consensus 364 ~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~---------------~hhVfVa~A~mEy~cskD-~~~AfrIFeL 426 (656)
T KOG1914|consen 364 DLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRT---------------RHHVFVAAALMEYYCSKD-KETAFRIFEL 426 (656)
T ss_pred CCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCC---------------cchhhHHHHHHHHHhcCC-hhHHHHHHHH
Confidence 4554 5899999999999999999999999988874 127777777777777543 356666666
Q ss_pred HHHhCCCCC
Q 047498 178 DISRVGVSP 186 (566)
Q Consensus 178 EM~~rGcsP 186 (566)
-|+.-|=.|
T Consensus 427 GLkkf~d~p 435 (656)
T KOG1914|consen 427 GLKKFGDSP 435 (656)
T ss_pred HHHhcCCCh
Confidence 455556555
No 254
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=22.62 E-value=4.1e+02 Score=25.56 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHhhhhhhhhchhhhhhHHH-hhhhheeeeehhhhHHHHHHhhh----hhHHHHHHHHHHhHHhHHHH
Q 047498 467 SYRARKSRVKRVREGLQNSLRGRIELIDSYAR-ISSMIEIEIEMDSDVLAAEAVSS----AESISEQIQQIMELENLEEK 541 (566)
Q Consensus 467 ~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~-~~~mieievemd~dv~aae~~~~----~~~i~eqi~~l~e~~~l~~~ 541 (566)
+......+|+++..++|.-|++|.+||..... +-+-..-|-+.=.+|.++...-. ...+++..+.--++.+.=.+
T Consensus 24 ~L~~~~~~v~~a~s~I~~~l~rR~dli~~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~ 103 (186)
T PF04011_consen 24 SLVRLRNAVQEAWSNIDVQLQRRHDLIPNLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSR 103 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Q ss_pred HhHhhhhchHHH
Q 047498 542 WRLQAEANDEAE 553 (566)
Q Consensus 542 wr~qaea~de~e 553 (566)
-..++|.--|..
T Consensus 104 l~~~~e~yP~Lk 115 (186)
T PF04011_consen 104 LLAVVENYPELK 115 (186)
T ss_dssp HHHHHTT-HHHH
T ss_pred HHHHHHcCCccc
No 255
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=22.50 E-value=40 Score=20.77 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=6.3
Q ss_pred CCCCCCcc
Q 047498 323 NFYPGEPL 330 (566)
Q Consensus 323 ~~~pge~m 330 (566)
.+.|||||
T Consensus 5 ~~~~GqP~ 12 (13)
T PF04648_consen 5 RLSPGQPM 12 (13)
T ss_pred eccCCCcC
Confidence 36799998
No 256
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.42 E-value=5.3e+02 Score=30.91 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHH
Q 047498 81 DASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSL 159 (566)
Q Consensus 81 rlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTL 159 (566)
..++..+.+..+.+..|...+......|+.. -.|.+..|+.+++.....| .+.+|+ .+...+. ..|.-.+--|
T Consensus 178 s~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg--~g~IT~edV~~lLG--~~d~e~IfdL 251 (702)
T PRK14960 178 AVDEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYG--QGAVHHQDVKEMLG--LIDRTIIYDL 251 (702)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhc--cCCHHHHHHH
Confidence 3456667777665433444444444444433 3599999999998877655 345565 3322222 3555567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 160 VQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 160 IdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
++.+.+ ++.++|+++++++...|..+
T Consensus 252 ldAI~k-~d~~~al~~L~el~~~g~d~ 277 (702)
T PRK14960 252 ILAVHQ-NQREKVSQLLLQFRYQALDV 277 (702)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHhCCCH
Confidence 888887 77999999999999999988
No 257
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=22.29 E-value=7.7e+02 Score=32.95 Aligned_cols=131 Identities=25% Similarity=0.318 Sum_probs=0.0
Q ss_pred cCCCcccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhhhhhhcc-------------chhH
Q 047498 407 QLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARM----CQLENKIYAVGE-------------PSYR 469 (566)
Q Consensus 407 ~l~qlp~~~v~~~a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~----~ql~nk~~avg~-------------~~y~ 469 (566)
.+.++-.+.=|-.+...|+..+-..|++||++|.+.-+.|-.-.+.+ +-|+..++++.+ ..=.
T Consensus 1077 El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~ 1156 (1930)
T KOG0161|consen 1077 ELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNK 1156 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhhhhhhhchhhhhhHHHhhhhheeeeehhhhHHHHHHhhhhhHHHHHHHHHH---------------h
Q 047498 470 ARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIM---------------E 534 (566)
Q Consensus 470 ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~mieievemd~dv~aae~~~~~~~i~eqi~~l~---------------e 534 (566)
.|-..|++.|..||+.-...-+.+..+. ..-.-..+.+++|++++- |
T Consensus 1157 k~e~e~~~l~~~leee~~~~e~~~~~lr------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e 1218 (1930)
T KOG0161|consen 1157 KREAEVQKLRRDLEEETLDHEAQIEELR------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQRE 1218 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHhHhhhhchHHHHH
Q 047498 535 LENLEEKWRLQAEANDEAERL 555 (566)
Q Consensus 535 ~~~l~~~wr~qaea~de~erl 555 (566)
+.++..+=..-..+..+.|++
T Consensus 1219 ~~~l~~ev~~~~~~k~~~e~~ 1239 (1930)
T KOG0161|consen 1219 IADLAAELEQLSSEKKDLEKK 1239 (1930)
T ss_pred HHHHHHHHHHHhhhhccHHHH
No 258
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.14 E-value=75 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 047498 110 NAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 110 ~GlCKaGrVDeAlsLF~EM~sr 131 (566)
.++.+.|+.++|.+.|++....
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 4567788999999999888765
No 259
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=21.90 E-value=59 Score=29.31 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhhh
Q 047498 471 RKSRVKRVREGLQNSL 486 (566)
Q Consensus 471 r~~rv~~~r~~l~~~l 486 (566)
--.|||+||+.|++-|
T Consensus 81 QE~rVk~aR~RLaeAL 96 (96)
T PF14048_consen 81 QERRVKKARKRLAEAL 96 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
Confidence 3479999999998754
No 260
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.79 E-value=1.2e+03 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHhHHHHHhHhhhhchHHHHHhhc
Q 047498 524 SISEQIQQIMELENLEEKWRLQAEANDEAERLINS 558 (566)
Q Consensus 524 ~i~eqi~~l~e~~~l~~~wr~qaea~de~erll~s 558 (566)
.+.+-++.+.+.-.-+..=.++.+.++-..+|++-
T Consensus 487 ~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 487 KAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444443333333445777777888888763
No 261
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=21.60 E-value=1.8e+02 Score=29.49 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=40.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 047498 420 AIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEP 466 (566)
Q Consensus 420 a~~qqll~qy~~l~~r~~~l~~~~~~~v~~lar~~ql~nk~~avg~~ 466 (566)
....+++..|+.|.+|+.+|-+.-..--..|+++.+|+++++-+-.|
T Consensus 135 ~~~~e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~ 181 (213)
T PF13093_consen 135 DASPEEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSP 181 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 35567888999999999999999888899999999999999765554
No 262
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.60 E-value=2.6e+02 Score=33.26 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=65.1
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccC-CC
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWS-RP 151 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~-~P 151 (566)
+-++.+|++++|...+.+-.+- ..+|...=+---+=+.+++++++|.++....-+.|. |++.+ +-..| -|. .-
T Consensus 413 RI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqc-mWf~~E 487 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQC-MWFQLE 487 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhh-HHHhHh
Confidence 5678999999999999998741 235544333444556789999999999999888886 55555 22222 231 12
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498 152 DVSVYTSLVQSLAASLKVSDALRLIDDIS 180 (566)
Q Consensus 152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~ 180 (566)
|. .+|-+.|++..|++=|..+-
T Consensus 488 ~g-------~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 488 DG-------EAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hh-------HHHHHHHHHHHHHHHHhhHH
Confidence 22 34667788899988877663
No 263
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.60 E-value=8e+02 Score=24.36 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=16.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q 047498 419 IAIRQQLLSQYDLLQSRIKDLKEA 442 (566)
Q Consensus 419 ~a~~qqll~qy~~l~~r~~~l~~~ 442 (566)
..--+++..+.+.|+.+++++.+.
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~ 49 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILES 49 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333456667788888888888773
No 264
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=21.31 E-value=6e+02 Score=26.26 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccccccCCCChHhHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRWKWSRPDVSVYTSLV 160 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~rw~~PDVVTYNTLI 160 (566)
-++....+.+..+..|...+..+...|+.... |+...+..-+++....--..+.+|. .+...... .++ .+.-.|+
T Consensus 144 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~-~~e-~~if~l~ 219 (343)
T PRK06585 144 ERDLARLIDDELAEAGLRITPDARALLVALLG--GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD-ASA-LSLDDAA 219 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC-ccc-ccHHHHH
Confidence 44445556655544455556666666665543 5666666666666543111123444 22111111 122 2223367
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 161 QSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 161 dGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
+.+.+ |+..+|+++++++...|..|
T Consensus 220 dai~~-~~~~~a~~~l~~ll~~g~~p 244 (343)
T PRK06585 220 DAALA-GDLAAFERALDRALAEGTAP 244 (343)
T ss_pred HHHHC-CCHHHHHHHHHHHHHcCCCH
Confidence 77664 88999999999999999999
No 265
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.24 E-value=4.6e+02 Score=31.05 Aligned_cols=93 Identities=12% Similarity=-0.037 Sum_probs=68.3
Q ss_pred HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-C
Q 047498 74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-D 152 (566)
Q Consensus 74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-D 152 (566)
..+-+.|+-|+|++++++-.-- .. -|.-.==--++-+.-.|+.++|+.+|++.+.- .| +
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~l-d~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~------------------vP~e 590 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHL-DP-KNPLCKYHRASILFSLGRYVEALQELEELKEL------------------VPQE 590 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhc-CC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh------------------Ccch
Confidence 4567889999999999988521 11 11111112334456679999999999999864 35 5
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
...|-.|.+-+-+.|+-+.|++-|.-|.+-.-++
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6778888899999999999999999887755554
No 266
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=21.16 E-value=7.1e+02 Score=26.01 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=22.2
Q ss_pred ccccCCCchhHHHHHHHHHHHhhhhccccc
Q 047498 374 ASRVIDPSLPQFLSVAAVASLAVGVTLNNL 403 (566)
Q Consensus 374 as~~idp~lp~~~~~~a~a~~~~g~~~n~~ 403 (566)
.+.|+||+==.++.+|++++..++...+.+
T Consensus 24 l~~~~~~~~~lIV~GGt~ga~li~~p~~~i 53 (254)
T PRK06743 24 FKNFLDVSSILIVIGGTTATIVVAYRFGEI 53 (254)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 678899887777777887777776665544
No 267
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=20.63 E-value=3.6e+02 Score=33.11 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS 154 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV 154 (566)
.+.|.|+.++|..+++.... .++. |.-|-.+|-++|-..|+.|+|+.+++.-... -|+--
T Consensus 52 sl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~------------------~P~ee 111 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK------------------YPSEE 111 (932)
T ss_pred HHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------------------CCcHH
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 047498 155 VYTSLVQSLAASLKVSDALRL 175 (566)
Q Consensus 155 TYNTLIdGLCKsGRVdEAlkL 175 (566)
--.-|..++.+.+...+-.+.
T Consensus 112 ll~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=20.63 E-value=2e+02 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498 103 DECCLIINAAIDRGNTDLALSIFYAMRS 130 (566)
Q Consensus 103 vTYNsLI~GlCKaGrVDeAlsLF~EM~s 130 (566)
.+|.-+=..+.+.|+.++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577888889999999999999988764
No 269
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.59 E-value=4.2e+02 Score=30.35 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=90.9
Q ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhc----CCC----CcChhhhHHHHHHHHh----cCChhHHHHHHHHHHhcCCC-
Q 047498 68 VEEELLSRVSGAKDASEVLEIVAESSKR----SGG----VLTVDECCLIINAAID----RGNTDLALSIFYAMRSSFDQ- 134 (566)
Q Consensus 68 ~~~aLIrGLCKAGrlDEAleLL~EM~er----~Gg----~PDvvTYNsLI~GlCK----aGrVDeAlsLF~EM~srG~~- 134 (566)
+=++-||+|.+.+++++|...+++-.+. -+| ...+.+|.-|+.+.=. +...-+|.-||+-+...|+.
T Consensus 88 ~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a 167 (480)
T TIGR01503 88 FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGFTS 167 (480)
T ss_pred ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCc
Confidence 4466799999999999999999988531 122 2335667778877621 23345788899999998874
Q ss_pred --CCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec--cchhh-HHHHhhc
Q 047498 135 --GLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR--CPTCL-IAVAVAQ 209 (566)
Q Consensus 135 --PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~--C~tC~-~A~aV~Q 209 (566)
+|-++|-+-..-+. .|=+++- .|...-++...-.+.|+.. +--+||.|-. ||-|. .|+.+++
T Consensus 168 ~EGG~ISYnlPYsK~v---------pLe~si~---~WqyvdRL~g~y~e~gv~I-nrE~FGpLtgtLvPPsisiav~ilE 234 (480)
T TIGR01503 168 FEGGGISYNIPYAKNV---------TLEKSLE---DWQYCDRLVGFYEEQGVHI-NREPFGPLTGTLVPPSISNAIGIIE 234 (480)
T ss_pred cCCCcceeccccCCCC---------CHHHHHH---HHHHHHHHHHHHHhcCcee-ccccccCCCCCccChHHHHHHHHHH
Confidence 44455533222111 1111111 1223334444445688888 6789998765 44353 7777755
Q ss_pred ----ccCcceeeecccccc
Q 047498 210 ----PQHGIQIVSCAKCRY 224 (566)
Q Consensus 210 ----pq~GiqlV~c~~cRy 224 (566)
.+||++-++-+|+.+
T Consensus 235 ~Lla~eqGVksisvgy~Q~ 253 (480)
T TIGR01503 235 GLLAAEQGVKNITVGYGQV 253 (480)
T ss_pred HHHHHHcCCeEEEeccccC
Confidence 889999888888754
No 270
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.38 E-value=3.7e+02 Score=31.71 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHH----HHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498 75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLI----INAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR 150 (566)
Q Consensus 75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsL----I~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~ 150 (566)
.+-+.+++++|+++++.-. -..++|.. --++.+.|+.|+|+..++ |+. .
T Consensus 55 alIq~~ky~~ALk~ikk~~-------~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~---------------~ 107 (652)
T KOG2376|consen 55 ALIQLDKYEDALKLIKKNG-------ALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLD---------------R 107 (652)
T ss_pred hhhhhhHHHHHHHHHHhcc-------hhhhcchhhHHHHHHHHHcccHHHHHHHHh-----ccc---------------c
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047498 151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVS 185 (566)
Q Consensus 151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcs 185 (566)
-|..+--.==.-|.|.|++++|+.++..+.+.+..
T Consensus 108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
No 271
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.28 E-value=2.2e+02 Score=27.02 Aligned_cols=54 Identities=9% Similarity=-0.118 Sum_probs=38.8
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498 78 GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS 131 (566)
Q Consensus 78 KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr 131 (566)
...+.+......+-+.+-....||...|..++..+-..|+.++|..+.+++..-
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444333333221223699999999999999999999999999999864
No 272
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=20.19 E-value=1.4e+02 Score=36.58 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=9.1
Q ss_pred CCCCCchhhHHhhhhh
Q 047498 29 SNPNNNTSALLSFLLA 44 (566)
Q Consensus 29 ~~~~~~~~~~~~~~~~ 44 (566)
++.|.+..+++|+++.
T Consensus 560 d~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHL 575 (1018)
T ss_pred ccCCcHHHHHHHHHHH
Confidence 4445555677776554
No 273
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.15 E-value=6.1e+02 Score=28.57 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHH
Q 047498 82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQ 161 (566)
Q Consensus 82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLId 161 (566)
.++....+....+..|...+......|.. + -.|++..|..+++.....| .+..|...+...-+ ..+-.+.--|++
T Consensus 180 ~~el~~~L~~i~k~egi~id~~al~~La~-~-s~G~lr~al~~Ldkl~~~~--~~~It~~~V~~~lg-~~~~~~vf~Li~ 254 (486)
T PRK14953 180 KEQIKEYLKRICNEEKIEYEEKALDLLAQ-A-SEGGMRDAASLLDQASTYG--EGKVTIKVVEEFLG-IVSQESVRKFLN 254 (486)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H-cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhC-CCCHHHHHHHHH
Confidence 44555566665543454444445554443 3 3488999999998887554 33455522111111 244445556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498 162 SLAASLKVSDALRLIDDISRVGVSP 186 (566)
Q Consensus 162 GLCKsGRVdEAlkLLeEM~~rGcsP 186 (566)
.+ ..|+.++|++++++|...|..|
T Consensus 255 ai-~~~d~~~al~~l~~L~~~g~~~ 278 (486)
T PRK14953 255 LL-LESDVDEAIKFLRTLEEKGYNL 278 (486)
T ss_pred HH-HCCCHHHHHHHHHHHHHcCCCH
Confidence 76 4589999999999999999988
No 274
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.09 E-value=4.4e+02 Score=31.54 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=46.1
Q ss_pred chhHHHHHHHHc--CCCHHHHHHHHHHHhhcCC------------CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498 67 VVEEELLSRVSG--AKDASEVLEIVAESSKRSG------------GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF 132 (566)
Q Consensus 67 ~~~~aLIrGLCK--AGrlDEAleLL~EM~er~G------------g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG 132 (566)
.+|..-++-+++ .|++..|+.+++......+ +..+......|++++.+ |+.+.|++++++|...|
T Consensus 197 ~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G 275 (709)
T PRK08691 197 AYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAACA 275 (709)
T ss_pred CcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 355544454444 5899999999877643111 12233345566777666 99999999999999999
Q ss_pred CCC
Q 047498 133 DQG 135 (566)
Q Consensus 133 ~~P 135 (566)
..+
T Consensus 276 ~d~ 278 (709)
T PRK08691 276 VGF 278 (709)
T ss_pred CCH
Confidence 863
Done!