BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047499
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OQO|A Chain A, Crystal Structure Of A Peptidoglycan Glycosyltransferase
From A Class A Pbp: Insight Into Bacterial Cell Wall
Synthesis
pdb|3D3H|A Chain A, Crystal Structure Of A Complex Of The Peptidoglycan
Glycosyltransferase Domain From Aquifex Aeolicus And
Neryl Moenomycin A
pdb|3NB7|A Chain A, Crystal Structure Of Aquifex Aeolicus Peptidoglycan
Glycosyltransferase In Complex With Decarboxylated Neryl
Moenomycin
Length = 200
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T QL KN FL ERT+ RKI E +LA+ +ER K +I+ Y+++IY G G YG+E+A+
Sbjct: 76 TQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQ 135
Query: 65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIE 121
YFGKH + AP +P R + VLKRM+E G+I E
Sbjct: 136 VYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPE 192
>pdb|3NB6|A Chain A, Crystal Structure Of Aquifex Aeolicus Peptidoglycan
Glycosyltransferase In Complex With Methylphosphoryl
Neryl Moenomycin
Length = 200
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T QL KN FL ERT+ RKI E +LA+ +ER K +I+ Y+++IY G G YG+E+A+
Sbjct: 76 TQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQ 135
Query: 65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIE 121
YFGKH + AP +P R + VLKRM+E G+I E
Sbjct: 136 VYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPE 192
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T Q+ KN +L ERT+ RKI E+ LA +E+ +SK +ILS YV+KI+ G YGI +A+
Sbjct: 95 TMQVAKNYYLSPERTLKRKITEIFLARKIEQNLSKEDILSLYVNKIFLGKNAYGIAAAAK 154
Query: 65 FYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETAL 124
Y+ K G+ AP +P+ + R + +L RM++ G+I
Sbjct: 155 IYYNKSINELSIAQMAMIAGLPKAPSKYNPVVNPERALERRNWILGRMLQLGYISQAEYQ 214
Query: 125 WVLKQPLDLR 134
+ +P++L
Sbjct: 215 KAVAEPINLN 224
>pdb|3HZS|A Chain A, S. Aureus Monofunctional Glycosyltransferase (Mtga)in
Complex With Moenomycin
Length = 209
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T Q+VKN F N+R+ +RK+ E+ +A +E+ +K EILS Y++ IY+G Y +E A+
Sbjct: 76 TQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAAN 135
Query: 65 FYFG 68
YFG
Sbjct: 136 HYFG 139
>pdb|3VMQ|A Chain A, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase: Apoenzyme
pdb|3VMQ|B Chain B, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase: Apoenzyme
pdb|3VMR|A Chain A, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase In Complex With Moenomycin
pdb|3VMS|A Chain A, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase In Complex With Nbd-Lipid Ii
pdb|3VMS|B Chain B, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase In Complex With Nbd-Lipid Ii
pdb|3VMT|A Chain A, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase In Complex With A Lipid Ii Analog
pdb|3VMT|B Chain B, Crystal Structure Of Staphylococcus Aureus Membrane-Bound
Transglycosylase In Complex With A Lipid Ii Analog
Length = 263
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T Q+VKN F N+R+ +RK+ E+ +A +E+ +K EILS Y++ IY+G Y +E A+
Sbjct: 129 TQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAAN 188
Query: 65 FYFG 68
YFG
Sbjct: 189 HYFG 192
>pdb|3DWK|A Chain A, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|B Chain B, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|C Chain C, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|D Chain D, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
Length = 625
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T Q+VK+ FL ++I RK E L+ LE+ SK +I Y++KIY+ G+ GI++A+
Sbjct: 83 TQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAK 142
Query: 65 FYFGK 69
+YF K
Sbjct: 143 YYFNK 147
>pdb|2OLU|A Chain A, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Apoenzyme
pdb|2OLV|A Chain A, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
pdb|2OLV|B Chain B, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
Length = 669
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASI 64
T Q+VK+ FL ++I RK E L+ LE+ SK +I Y++KIY+ G+ GI++A+
Sbjct: 92 TQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAK 151
Query: 65 FYFGK 69
+YF K
Sbjct: 152 YYFNK 156
>pdb|3VMA|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
Pbp1b From Escherichia Coli
Length = 768
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIE 60
T QLVKN FL +ER+ RK E +AL ++ SK IL Y++++Y G I G
Sbjct: 233 TQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFP 292
Query: 61 SASIFYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKD 97
AS++YFG+ GM+ + +P ++
Sbjct: 293 LASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRN 329
>pdb|3FWL|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
Pbp1b From Escherichia Coli
Length = 751
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 5 TWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIE 60
T QLVKN FL +ER+ RK E AL + SK IL Y +++Y G I G
Sbjct: 216 TQQLVKNLFLSSERSYWRKANEAYXALIXDARYSKDRILELYXNEVYLGQSGDNEIRGFP 275
Query: 61 SASIFYFGK 69
AS++YFG+
Sbjct: 276 LASLYYFGR 284
>pdb|2JE5|A Chain A, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
pdb|2JE5|B Chain B, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
Length = 720
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 7 QLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYW-----GHGIYGIES 61
QL+K + + T++RK E+V ALALERA++K EIL++Y++ + G I G
Sbjct: 112 QLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGARQ 171
Query: 62 ASIFYFGKHPXXXXXXXXXXXXGMIPAPDLRSPLKDCSRGKT 103
A+ FG G+ +P SP ++ K+
Sbjct: 172 AAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKS 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,952,978
Number of Sequences: 62578
Number of extensions: 127376
Number of successful extensions: 296
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 11
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)