Query 047499
Match_columns 152
No_of_seqs 129 out of 1086
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11636 mrcA penicillin-bindi 100.0 1.2E-50 2.5E-55 377.5 16.9 148 2-149 119-273 (850)
2 COG5009 MrcA Membrane carboxyp 100.0 9.1E-51 2E-55 368.9 15.8 147 2-148 120-273 (797)
3 PRK13481 glycosyltransferase; 100.0 3.1E-50 6.8E-55 326.9 15.4 128 2-129 97-231 (232)
4 PRK14850 penicillin-binding pr 100.0 1E-49 2.2E-54 367.7 16.4 148 2-149 210-367 (764)
5 TIGR02071 PBP_1b penicillin-bi 100.0 1.2E-49 2.5E-54 366.2 16.4 148 2-149 200-357 (730)
6 PRK09506 mrcB bifunctional gly 100.0 2.1E-49 4.5E-54 368.0 16.7 148 2-149 264-421 (830)
7 TIGR02073 PBP_1c penicillin-bi 100.0 3.4E-49 7.3E-54 363.0 16.2 147 2-148 86-237 (727)
8 TIGR02074 PBP_1a_fam penicilli 100.0 1.8E-48 3.9E-53 347.5 17.0 148 2-149 55-210 (530)
9 PRK11240 penicillin-binding pr 100.0 1.3E-47 2.7E-52 354.4 16.6 144 2-146 115-263 (772)
10 TIGR02070 mono_pep_trsgly mono 100.0 1.1E-46 2.5E-51 304.9 13.0 116 2-117 108-223 (224)
11 COG0744 MrcB Membrane carboxyp 100.0 2.3E-46 5.1E-51 341.3 16.5 148 2-149 130-284 (661)
12 PRK00056 mtgA monofunctional b 100.0 1.6E-46 3.4E-51 306.3 13.5 118 2-119 113-230 (236)
13 PF00912 Transgly: Transglycos 100.0 5.8E-46 1.3E-50 292.1 12.2 112 2-113 67-178 (178)
14 COG4953 PbpC Membrane carboxyp 100.0 1.6E-39 3.5E-44 292.6 15.1 146 2-148 111-261 (733)
15 PF09851 SHOCT: Short C-termin 90.2 0.44 9.6E-06 27.1 3.0 23 106-128 5-27 (31)
16 cd08324 CARD_NOD1_CARD4 Caspas 80.2 2.7 5.9E-05 29.6 3.5 36 97-132 6-44 (85)
17 PF10925 DUF2680: Protein of u 78.7 9.4 0.0002 24.9 5.5 28 100-127 15-42 (59)
18 cd08330 CARD_ASC_NALP1 Caspase 75.3 4.5 9.8E-05 27.8 3.5 25 106-130 18-42 (82)
19 cd08329 CARD_BIRC2_BIRC3 Caspa 66.4 9 0.0002 27.0 3.5 27 106-132 26-52 (94)
20 cd08325 CARD_CASP1-like Caspas 62.2 12 0.00026 25.7 3.4 42 105-146 18-59 (83)
21 cd08323 CARD_APAF1 Caspase act 57.8 17 0.00036 25.4 3.5 26 105-130 16-41 (86)
22 PF09693 Phage_XkdX: Phage unc 55.7 13 0.00027 22.3 2.3 22 108-129 17-38 (40)
23 cd01671 CARD Caspase activatio 55.2 19 0.00042 23.5 3.4 28 104-131 14-41 (80)
24 COG3937 Uncharacterized conser 55.1 43 0.00092 24.6 5.4 29 98-126 19-47 (108)
25 cd08788 CARD_NOD2_2_CARD15 Cas 54.9 37 0.00079 23.7 4.8 41 105-149 16-56 (81)
26 PF00619 CARD: Caspase recruit 48.5 31 0.00067 22.8 3.6 25 105-129 18-42 (85)
27 smart00114 CARD Caspase recrui 48.0 26 0.00057 23.7 3.2 26 107-132 24-49 (88)
28 PRK04031 DNA primase; Provisio 44.8 49 0.0011 29.6 5.1 61 71-131 73-147 (408)
29 PF13730 HTH_36: Helix-turn-he 44.1 70 0.0015 19.3 4.5 45 73-118 2-55 (55)
30 cd08332 CARD_CASP2 Caspase act 43.8 38 0.00083 23.5 3.6 26 106-131 23-48 (90)
31 PF06014 DUF910: Bacterial pro 43.7 29 0.00063 23.0 2.7 23 105-127 30-52 (62)
32 cd08785 CARD_CARD9-like Caspas 43.6 42 0.00091 23.4 3.7 27 105-131 18-44 (86)
33 PRK11512 DNA-binding transcrip 41.6 38 0.00082 24.8 3.5 59 59-122 21-88 (144)
34 PF09397 Ftsk_gamma: Ftsk gamm 41.4 22 0.00047 23.6 1.9 23 101-123 33-55 (65)
35 PF08100 Dimerisation: Dimeris 40.0 44 0.00096 21.0 3.1 39 108-149 11-51 (51)
36 PF12802 MarR_2: MarR family; 36.8 34 0.00074 21.0 2.3 46 73-120 2-53 (62)
37 TIGR01669 phage_XkdX phage unc 36.2 45 0.00097 20.5 2.6 20 109-128 23-42 (45)
38 PF13545 HTH_Crp_2: Crp-like h 36.0 49 0.0011 21.1 3.0 32 73-119 28-59 (76)
39 cd08810 CARD_BCL10 Caspase act 35.9 60 0.0013 22.6 3.5 25 106-130 19-43 (84)
40 PF12793 SgrR_N: Sugar transpo 33.2 81 0.0018 22.9 4.0 38 67-119 13-50 (115)
41 smart00843 Ftsk_gamma This dom 32.6 35 0.00077 22.6 1.8 24 100-123 31-54 (63)
42 PF14038 YqzE: YqzE-like prote 31.8 32 0.00069 22.2 1.5 19 4-24 9-27 (54)
43 cd08326 CARD_CASP9 Caspase act 31.4 78 0.0017 21.8 3.5 25 106-130 19-43 (84)
44 COG3462 Predicted membrane pro 31.1 69 0.0015 23.7 3.3 43 82-128 71-113 (117)
45 TIGR01610 phage_O_Nterm phage 31.0 1E+02 0.0023 21.2 4.2 38 69-121 43-80 (95)
46 cd08327 CARD_RAIDD Caspase act 30.8 65 0.0014 22.8 3.1 23 108-130 26-48 (94)
47 COG2066 GlsA Glutaminase [Amin 30.7 99 0.0021 26.7 4.6 83 37-122 166-249 (309)
48 KOG0982 Centrosomal protein Nu 29.7 39 0.00085 30.6 2.1 52 1-52 433-489 (502)
49 PF00325 Crp: Bacterial regula 28.5 1.2E+02 0.0026 17.3 3.5 18 101-118 15-32 (32)
50 PF10415 FumaraseC_C: Fumarase 28.2 1.1E+02 0.0023 19.5 3.5 23 106-128 26-48 (55)
51 PF02631 RecX: RecX family; I 27.3 84 0.0018 22.4 3.3 25 103-127 9-33 (121)
52 PF08220 HTH_DeoR: DeoR-like h 25.9 72 0.0016 20.0 2.4 25 104-128 1-25 (57)
53 PHA02513 V1 structural protein 25.8 1.1E+02 0.0023 22.9 3.5 26 21-46 2-31 (135)
54 PRK10026 arsenate reductase; P 24.4 94 0.002 23.5 3.1 79 12-95 6-96 (141)
55 PF07812 TfuA: TfuA-like prote 23.4 2E+02 0.0044 21.4 4.7 63 55-126 43-107 (120)
56 PF11046 HycA_repressor: Trans 23.3 58 0.0013 25.1 1.8 16 35-50 108-123 (148)
57 PF04433 SWIRM: SWIRM domain; 22.9 2.4E+02 0.0052 18.8 5.0 52 70-128 11-64 (86)
58 PF09633 DUF2023: Protein of u 21.6 72 0.0016 23.2 1.9 26 61-86 62-87 (101)
59 COG1414 IclR Transcriptional r 21.4 84 0.0018 25.5 2.5 45 64-123 10-54 (246)
60 PF13618 Gluconate_2-dh3: Gluc 21.3 1.5E+02 0.0031 21.2 3.6 39 50-88 47-86 (131)
61 smart00420 HTH_DEOR helix_turn 21.3 1.6E+02 0.0035 16.7 3.3 23 105-127 2-24 (53)
62 PF14076 DUF4258: Domain of un 21.1 1.5E+02 0.0032 18.6 3.2 25 107-132 5-29 (73)
63 PF08044 DUF1707: Domain of un 21.0 2E+02 0.0044 18.0 3.7 25 101-125 7-31 (53)
64 COG4483 Uncharacterized protei 20.3 1.6E+02 0.0035 19.8 3.2 32 96-127 21-52 (68)
No 1
>PRK11636 mrcA penicillin-binding protein 1a; Provisional
Probab=100.00 E-value=1.2e-50 Score=377.49 Aligned_cols=148 Identities=33% Similarity=0.471 Sum_probs=142.0
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+|++++||+.||++|+++|++||++||||||||+|||.||||+|+|||++||++||||++++||++|||+
T Consensus 119 STITQQlaKn~~l~~ert~~RKikE~~lA~~lE~~~SKdeILe~YLN~IyfG~gayGV~aAA~~YFgK~~~~LtlaEaA~ 198 (850)
T PRK11636 119 STITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAV 198 (850)
T ss_pred CcHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCcHhHHHHHHHHhCCChHHCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-------CchhhHHHHHHHhh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-------DGKKYADRLLYLLS 149 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-------~~~~~~d~~~~~~~ 149 (152)
|||||++|+.|||++||+++++||+.||++|++.|+||++|+++|..+|+.+.. ..|+|+|.|.++|.
T Consensus 199 LAgl~kaPs~y~P~~npe~a~~Rr~~VL~~M~~~G~It~~e~~~a~~~pl~~~~~~~~~~~~~~y~~~~V~~~l~ 273 (850)
T PRK11636 199 IAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQAQYDQARSEPIVANYHAPEIAFSAPYLSEMVRQEMY 273 (850)
T ss_pred HhccCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCcccccccCccccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987542 35889999988763
No 2
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.1e-51 Score=368.91 Aligned_cols=147 Identities=41% Similarity=0.554 Sum_probs=142.1
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+|++++||+.||++|++||++||+.+||+||||+|||.+|||.|.|||.+||+.||||++.+||++|+|+
T Consensus 120 STITQQvAkNf~Ltsertl~RKikEa~LA~~IE~~lsKdeILELYLNkIylG~~aYGvaAAAq~YFgKsV~eLtlaE~A~ 199 (797)
T COG5009 120 STITQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSKDEILELYLNKIYLGYRAYGVAAAAQTYFGKSVNELTLAEAAM 199 (797)
T ss_pred cHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhcCcchhHHHHHHHHhCCChhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-------CchhhHHHHHHHh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-------DGKKYADRLLYLL 148 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-------~~~~~~d~~~~~~ 148 (152)
||+||++|+.|||+.||+++++|||+||++|.++|+||++|+++|..+|+.... .+|.|++.|.+||
T Consensus 200 lA~LPKaPs~ynP~~~p~RA~~RRn~VL~rM~e~gyIt~~~~~~A~~epl~~~~~~~~~~~~A~YfaE~VRqe~ 273 (797)
T COG5009 200 LAGLPKAPSNYNPLYNPERAKERRNYVLNRMLEEGYITQEQADEAKAEPLVAKYHGPEIAFSAPYFAEMVRQEM 273 (797)
T ss_pred HhhcCCCccccCCccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCcccccccccchhccChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998763 4578888888776
No 3
>PRK13481 glycosyltransferase; Provisional
Probab=100.00 E-value=3.1e-50 Score=326.92 Aligned_cols=128 Identities=31% Similarity=0.442 Sum_probs=125.3
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCC-------CCC
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHP-------SLL 74 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~-------~~L 74 (152)
||||||+|||++++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||++ ++|
T Consensus 97 STITQQlaKn~~l~~~rt~~RK~~E~~~A~~lE~~~SK~eILe~YLN~v~~G~g~yGi~aAA~~YFgK~~~~~~~~~~~L 176 (232)
T PRK13481 97 STITQQVVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHI 176 (232)
T ss_pred CcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHcccCCchHHHHHHHHHHcCCCccccccCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 599
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcC
Q 047499 75 SMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQ 129 (152)
Q Consensus 75 t~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~ 129 (152)
|++|||+|||+||+|+.|+|.++++.+++||+.||++|++.|+||++|++.|..+
T Consensus 177 tl~EaA~LA~l~~~P~~y~P~~~~~~a~~R~~~VL~~M~~~g~It~~q~~~a~~~ 231 (232)
T PRK13481 177 TVLQSAILASKVNAPSVYNINDMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ 231 (232)
T ss_pred CHHHHHHHhhhcCCCccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998753
No 4
>PRK14850 penicillin-binding protein 1b; Provisional
Probab=100.00 E-value=1e-49 Score=367.72 Aligned_cols=148 Identities=30% Similarity=0.415 Sum_probs=142.4
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc----chhHHHHHHHhhCCCCCCCCHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIESASIFYFGKHPSLLSMA 77 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~----~~Gv~aAA~~yFgk~~~~Lt~~ 77 (152)
||||||||||+|++++||+.||++|+++|++||++||||||||+|||.||||+| +|||++||++||||++++||++
T Consensus 210 STITQQlvKn~~l~~erT~~RK~~E~~lAl~LE~~ysKdeILe~YLN~vy~G~~~~~~i~Gv~aAs~~YFgk~~~eLtl~ 289 (764)
T PRK14850 210 STLTQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLGQDGNEQIRGFPLASIYYFGRPINELNLD 289 (764)
T ss_pred cHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCCCcceecHHHHHHHHcCCChHHCCHH
Confidence 999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC------CchhhHHHHHHHhh
Q 047499 78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD------DGKKYADRLLYLLS 149 (152)
Q Consensus 78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~------~~~~~~d~~~~~~~ 149 (152)
|+|+||||+++|+.|||++||+++++||+.||++|+++|+||++|++.|..+|+.+.. ..|+|.|.|.+|+.
T Consensus 290 EaAlLagl~k~Ps~ynP~~~pe~a~~Rrn~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~f~~~v~~el~ 367 (764)
T PRK14850 290 QYALLVGMVKGASLYNPWTNPNLTLKRRNLVLFLLYKQKVITRKLYKDLCSRPLNVQSKGNIISSHPAFIQLVCEEFH 367 (764)
T ss_pred HHHHHhhhcCCccccCCccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhccccccccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997642 46899999998874
No 5
>TIGR02071 PBP_1b penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B.
Probab=100.00 E-value=1.2e-49 Score=366.18 Aligned_cols=148 Identities=33% Similarity=0.459 Sum_probs=142.5
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc----chhHHHHHHHhhCCCCCCCCHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIESASIFYFGKHPSLLSMA 77 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~----~~Gv~aAA~~yFgk~~~~Lt~~ 77 (152)
||||||||||+|++++||+.||++|+++|++||++||||||||+|||.||||+| +|||++||++||||++++||++
T Consensus 200 STiTQQlvKn~~l~~ert~~RK~~E~~lA~~lE~~~sKdeILe~YLN~vy~G~~g~~~~~Gi~~Aa~~YFgk~~~~Ltl~ 279 (730)
T TIGR02071 200 STLTQQLVKNLFLSNERSLWRKANEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGFPLASQYYFGRPLGELSLD 279 (730)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCCCCCEeeHHHHHHHHhCCChhhCCHH
Confidence 999999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC------CchhhHHHHHHHhh
Q 047499 78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD------DGKKYADRLLYLLS 149 (152)
Q Consensus 78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~------~~~~~~d~~~~~~~ 149 (152)
|+|+||||+++|+.|||++||+++++|||.||++|+++|+||++|++.|..+|+.+.. ..|+|.|.|.+||.
T Consensus 280 E~A~Lagl~k~Ps~y~P~~~pe~a~~Rrn~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~~~~~v~~~l~ 357 (730)
T TIGR02071 280 QVALLVGMVKGPSYYNPWRNPDRALERRNLVLRLLQEQKIIDDEEYDMLSARPLGVQKKGGIISRQPAFLQLVRRELR 357 (730)
T ss_pred HHHHHHhhcCCccccCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCcccCcCccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997643 46899999998874
No 6
>PRK09506 mrcB bifunctional glycosyl transferase/transpeptidase; Reviewed
Probab=100.00 E-value=2.1e-49 Score=367.97 Aligned_cols=148 Identities=31% Similarity=0.441 Sum_probs=142.2
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc----chhHHHHHHHhhCCCCCCCCHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG----IYGIESASIFYFGKHPSLLSMA 77 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~----~~Gv~aAA~~yFgk~~~~Lt~~ 77 (152)
||||||||||+|++++||+.||++|+++|+.||.+|||+||||+|||.||||+| +|||++||++||||++++||++
T Consensus 264 STITQQLvKn~~l~~erTl~RK~~E~~lAl~LE~~ysKdeILe~YLN~vy~G~~g~~~~~Gi~aAs~~YFgk~~~eLtl~ 343 (830)
T PRK09506 264 STLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRILELYLNEVYLGQSGDDQIRGFPLASLYYFGRPVEELSLD 343 (830)
T ss_pred chHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCCCcCeecHHHHHHHHcCCChHHCCHH
Confidence 999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC------CchhhHHHHHHHhh
Q 047499 78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD------DGKKYADRLLYLLS 149 (152)
Q Consensus 78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~------~~~~~~d~~~~~~~ 149 (152)
|+|+||||+++|+.|||++||+++++|||.||+.|+++|+||++|++.|..+|+.+.. ..|+|.|.|.+||.
T Consensus 344 E~AlLagl~k~Ps~YnP~~~pe~a~~Rrn~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~f~~~v~~el~ 421 (830)
T PRK09506 344 QQALLVGMVKGASLYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPKGGVISPQPAFMQMVRQELQ 421 (830)
T ss_pred HHHHHhhhcCCCccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhCccccCcCccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997643 35899999998874
No 7
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=100.00 E-value=3.4e-49 Score=362.98 Aligned_cols=147 Identities=35% Similarity=0.414 Sum_probs=141.0
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||++++++||+.||++|+++|++||++|||+||||+|||.+|||+|+|||++||+.||||++++||++|||+
T Consensus 86 STITqQlak~~~~~~~rt~~rK~~E~~~A~~lE~~~sK~eILe~YLN~i~~G~~~~Gv~aAs~~YFgK~~~~Ltl~EaA~ 165 (727)
T TIGR02073 86 STLTMQLARLLDPELSRTLTGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSLAEAAL 165 (727)
T ss_pred chHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCccHHHHHHHHHHcCCChHHCCHHHHhH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC-----CCchhhHHHHHHHh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR-----DDGKKYADRLLYLL 148 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~-----~~~~~~~d~~~~~~ 148 (152)
|||||++|+.|+|.+||+++++||+.||++|++.|+||++|++.|..+|+... ...|+|++.++.++
T Consensus 166 LA~l~~~P~~y~P~~~~~~a~~rr~~VL~~M~~~g~it~~e~~~a~~~p~~~~~~~~~~~a~~~~~~v~~~~ 237 (727)
T TIGR02073 166 LAALPQAPSARRLDRLPKAAKAARDRLLDRMVEQGPDDSEQVALAALEPLPALPEPLPQLAPHFALKLLRAR 237 (727)
T ss_pred HeeccCCcccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhCccccccccCccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998653 24689999888765
No 8
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.
Probab=100.00 E-value=1.8e-48 Score=347.46 Aligned_cols=148 Identities=45% Similarity=0.647 Sum_probs=142.5
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||++++++||+.||++|+++|.+||++|||+||||+|||.+|||+|+|||++||++||||++++||++|||+
T Consensus 55 STitqQ~~k~~~~~~~~t~~rK~~E~~~a~~le~~~sK~~Il~~YlN~~~~g~~~~Gv~~Aa~~yF~k~~~~L~~~e~a~ 134 (530)
T TIGR02074 55 STITQQLAKNLYLTNERTITRKIQEALLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQFYFGKSVNDLTLAEAAM 134 (530)
T ss_pred CcHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCccHHHHHHHHHHcCCChhHCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC--------CchhhHHHHHHHhh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD--------DGKKYADRLLYLLS 149 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~--------~~~~~~d~~~~~~~ 149 (152)
||||+++|+.|+|..+++++.+||+.||++|++.|+||++|++.|..+|+.... ..|+|.|.|.+|+.
T Consensus 135 La~~~~~P~~~~p~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~~el~ 210 (530)
T TIGR02074 135 LAGLPKAPSAYNPFVNPERAKDRRNLVLSNMVENGYITAEEAEEAINEPIQLYLQTKTAEEYKYPYFVDYVIQELE 210 (530)
T ss_pred HHhhccCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhCCcccccccccccCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997532 46899999998873
No 9
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=100.00 E-value=1.3e-47 Score=354.38 Aligned_cols=144 Identities=33% Similarity=0.370 Sum_probs=135.3
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||++ ..+||+.||++|+++|++||++||||||||+|||.+|||+|+|||++||+.||||++++||++|||+
T Consensus 115 STITqQlar~~~-~~~rt~~rK~~E~~lA~~lE~~~sK~eILe~YLN~i~fG~~~~Gv~aAa~~YFgK~~~~LtlaEaA~ 193 (772)
T PRK11240 115 STLTMQVARLLD-PHPRTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAAL 193 (772)
T ss_pred chHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCchHHHHHHHHHHcCCChhHCCHHHHHH
Confidence 999999999865 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-----CchhhHHHHHH
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-----DGKKYADRLLY 146 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-----~~~~~~d~~~~ 146 (152)
||||+++|+.|+|.+||+++++||+.||++|++.|+||++|++.|..+|+.... ..|++++.+..
T Consensus 194 LA~lp~aPs~y~P~~~~~~a~~rr~~VL~~M~~~g~it~~e~~~a~~~~~~~~~~~~~~~a~~~~~~~~~ 263 (772)
T PRK11240 194 LAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQGVWSAEQVKESREEPVWLAPRQMPQLAPLFARMMLG 263 (772)
T ss_pred HhccCCCcccCCCcCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCcccccccCCccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987542 34677776654
No 10
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase. This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam model pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan).
Probab=100.00 E-value=1.1e-46 Score=304.94 Aligned_cols=116 Identities=32% Similarity=0.451 Sum_probs=114.7
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||+|||+|++++||+.||++|+++|++||..|||+||||.|||.++||+|+|||++||++||||++++||.+|||+
T Consensus 108 STITQQlaKnl~l~~~rs~~RK~~E~~lA~~lE~~~sK~~ILe~YLN~v~~G~g~yGv~aAa~~yFgk~~~~Lt~~EaA~ 187 (224)
T TIGR02070 108 STISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFGAEAAARYYFKRSASNLTRGQAAR 187 (224)
T ss_pred chHHHHHHHHHccCCCCcHhHHHHHHHHHHHHHHhcCHHHHHHHHhhhcccCCCcHHHHHHHHHHcCCChHHCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGF 117 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~ 117 (152)
|||++++|+.|+|.++++.+++|++.||++|.+.|.
T Consensus 188 LA~ll~~P~~y~p~~~~~~~~~R~~~vl~~M~~~g~ 223 (224)
T TIGR02070 188 LAAVLPNPKYYDENRPGPYVRRKATWILKQMGYLGL 223 (224)
T ss_pred HHhhcCCccccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999885
No 11
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.3e-46 Score=341.33 Aligned_cols=148 Identities=42% Similarity=0.620 Sum_probs=141.6
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+|+++++|+.||++|+++|++||..|||+||||+|||.||||+|.|||++||++||||++++||++|+|+
T Consensus 130 STITQQl~KN~fL~~~~t~~RK~~E~~lA~~LE~~~sKdeILe~YLN~vy~G~g~~Gv~aAA~~yFgk~a~~Ltl~qaA~ 209 (661)
T COG0744 130 STITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFGRGAYGVEAAAQYYFGKPAKDLTLAQAAL 209 (661)
T ss_pred cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhcccCCCchHHHHHHHHHhCCChHHCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC-------CCchhhHHHHHHHhh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR-------DDGKKYADRLLYLLS 149 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~-------~~~~~~~d~~~~~~~ 149 (152)
||||+|+|+.|+|.++++.+++|++.||++|++.|+||++|+++|+.+|+.+. ...+.|.+.|..|++
T Consensus 210 Lag~~~~Ps~y~p~~~~~~a~~R~~~VL~~M~~~g~It~~~~~~A~~~~l~~~~~~~~~~~~~~~~~~~v~~el~ 284 (661)
T COG0744 210 LAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYDAALAEPLQVQQAKTVATSPPPYFDDVVRQELA 284 (661)
T ss_pred HhccCCCccccCCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHhccCCcccccccccccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984 234777787777765
No 12
>PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
Probab=100.00 E-value=1.6e-46 Score=306.33 Aligned_cols=118 Identities=35% Similarity=0.467 Sum_probs=116.2
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||+|||++++++||+.||++|+++|++||..|||+||||.|||.++||+|+|||++||++||||++++||.+|||+
T Consensus 113 STITQQlaKnl~l~~~rs~~RK~~E~~lA~~lE~~~sK~~ILe~YLN~v~~G~g~yGi~aAa~~YFgk~~~~Ls~~EaA~ 192 (236)
T PRK00056 113 STISQQTAKNLFLWPGRSWVRKGLEAPLTLMIELVWSKRRILEVYLNIAEWGPGIFGAEAAARHYFGKPASKLSASQAAL 192 (236)
T ss_pred CcHHHHHHHHHcccCCCcHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCchHHHHHHHHHcCCChhhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFID 119 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it 119 (152)
|||++++|+.|+|.++++.+++|++.||++|.+.|..+
T Consensus 193 La~ll~~P~~y~p~~~~~~~~~R~~~Vl~~M~~~g~~~ 230 (236)
T PRK00056 193 LAAVLPNPRRYDAHRPSPYVRRRAAWILRQMRQLGGPE 230 (236)
T ss_pred HHhhcCCccccCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999854
No 13
>PF00912 Transgly: Transglycosylase; InterPro: IPR001264 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 51 GT51 from CAZY comprises enzymes with only one known activity; murein polymerases (2.4 from EC). These enzymes utilise MurNAc-GlcNAc-P-P-lipid II as the sugar donor. The family includes the bifunctional penicillin-binding proteins that have a transglycosylase (N terminus) and transpeptidase (C terminus) domain [] and the monofunctional biosynthetic peptidoglycan transglycosylases [].; GO: 0003824 catalytic activity, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall; PDB: 3VMT_A 3VMS_B 3VMQ_A 3VMR_A 3D3H_A 3NB7_A 3NB6_A 2OQO_A 2V2F_A 3HZS_A ....
Probab=100.00 E-value=5.8e-46 Score=292.10 Aligned_cols=112 Identities=55% Similarity=0.836 Sum_probs=109.0
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+++++++|+.||++|+++|.+||+.|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus 67 STItqQlak~~~~~~~~t~~rK~~E~~~A~~le~~~sK~~ILe~YLN~i~~G~~~~Gv~aAs~~yF~k~~~~Ls~~eaa~ 146 (178)
T PF00912_consen 67 STITQQLAKNLFLSNERTLRRKLREAILALRLERRYSKDEILELYLNSIYFGNGIYGVEAASRYYFGKSPSDLSLAEAAL 146 (178)
T ss_dssp SHHHHHHHHHHTTSSSSSHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCSBESTTBBSHHHHHHHHHSSSCGG--HHHHHH
T ss_pred eeHHHHHHHHHHccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhHcccccchHHHHHHHHhCCCHHHCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMV 113 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~ 113 (152)
||+++++|+.|+|.++|+.+++||++||++|+
T Consensus 147 La~l~~~P~~y~p~~~~~~~~~r~~~vL~~M~ 178 (178)
T PF00912_consen 147 LAGLLPNPSRYNPYRNPERAKERRNRVLDRMV 178 (178)
T ss_dssp HHHCTTSTTTSBTTTSHHHHHHHHHHHHHHHH
T ss_pred HhhhccCccccCCCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999996
No 14
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-39 Score=292.61 Aligned_cols=146 Identities=34% Similarity=0.422 Sum_probs=138.2
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||+||.+.. .+||+..|++|++.|++||.++||+|||+.|||.+|||+|++||++||..||||++++||.+|+|+
T Consensus 111 STlTMQvARlleP-~~Rtl~gK~~qi~rAiqLE~~lSK~EIL~lYLn~aPyGgNieGv~AAS~aYFgk~~~~Ls~aEAal 189 (733)
T COG4953 111 STLTMQVARLLEP-RPRTLGGKIRQIWRAIQLESRLSKREILELYLNRAPYGGNIEGVRAASLAYFGKEPKRLSLAEAAL 189 (733)
T ss_pred chHHHHHHHHhCc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCchHHHHHHHHHHhCCChhhcCHHHHHH
Confidence 9999999998764 559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC-----CCchhhHHHHHHHh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR-----DDGKKYADRLLYLL 148 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~-----~~~~~~~d~~~~~~ 148 (152)
||++||+|++.+|.++++++.++|++||++|+..|+++++++..+..+|+..+ ..+|||+++++.|-
T Consensus 190 LavLPq~P~~~rpdr~~~~a~~AR~~vL~rm~~~g~~~~~~~~~a~le~v~~~~~~~p~~APhfa~~l~~~~ 261 (733)
T COG4953 190 LAVLPQNPERRRPDRNPEAAEAARNRVLTRMAVQGVWSEEEAKRARLEPVPNRRRQLPFLAPHFAFRLLNQY 261 (733)
T ss_pred HHhccCChhhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhccccccchhhcccccHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999988653 46799998887754
No 15
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=90.23 E-value=0.44 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhc
Q 047499 106 ARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
-..|+.|++.|.||++|+.....
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Confidence 35799999999999999998754
No 16
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=80.18 E-value=2.7 Score=29.59 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=26.9
Q ss_pred CcHHHHHHHH---HHHHHHHHcCCCCHHHHHHHhcCCCC
Q 047499 97 DCSRGKTFQA---RVLKRMVEAGFIDIETALWVLKQPLD 132 (152)
Q Consensus 97 ~~~~~~~r~~---~vL~~m~~~g~it~~~~~~a~~~p~~ 132 (152)
|.+....|.. -+|++|..+|+|++++++...+.|=+
T Consensus 6 hRe~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~~T~ 44 (85)
T cd08324 6 NRELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCACPTQ 44 (85)
T ss_pred HHHHHHHHHHhhHHHHHHHhccCCccHHHHHHHHhCCCC
Confidence 3344444433 38999999999999999998777644
No 17
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=78.74 E-value=9.4 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHh
Q 047499 100 RGKTFQARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 100 ~~~~r~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
.....+..+++..++.|.||+++++...
T Consensus 15 qm~e~kK~~idk~Ve~G~iTqeqAd~ik 42 (59)
T PF10925_consen 15 QMLELKKQIIDKYVEAGVITQEQADAIK 42 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456778899999999999999998764
No 18
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=75.33 E-value=4.5 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
+.||+.|.+.|+||+++++...+++
T Consensus 18 ~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 18 DPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 5699999999999999999988876
No 19
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=66.42 E-value=9 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCCCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQPLD 132 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p~~ 132 (152)
+.||+.|.+.|+||.++++....++-.
T Consensus 26 ~~ilD~Ll~~~Vlt~ee~e~I~~~~t~ 52 (94)
T cd08329 26 LPILDSLLSANVITEQEYDVIKQKTQT 52 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCCh
Confidence 349999999999999999988776543
No 20
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=62.22 E-value=12 Score=25.70 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhcCCCCCCCCchhhHHHHHH
Q 047499 105 QARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLY 146 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~~~~~~~d~~~~ 146 (152)
-+-+|+.|.+.++++++|.+....+.-.....+...+|.|..
T Consensus 18 i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~ 59 (83)
T cd08325 18 INGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTE 59 (83)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 456899999999999999999887765555666666666653
No 21
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=57.83 E-value=17 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 105 QARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
...|++.|++.|+||.++++....+|
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 34599999999999999999887765
No 22
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=55.73 E-value=13 Score=22.27 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhcC
Q 047499 108 VLKRMVEAGFIDIETALWVLKQ 129 (152)
Q Consensus 108 vL~~m~~~g~it~~~~~~a~~~ 129 (152)
-+...+..|.||++|+...-.+
T Consensus 17 ~v~~~V~~g~IT~eey~eITGe 38 (40)
T PF09693_consen 17 DVKNFVEAGWITKEEYKEITGE 38 (40)
T ss_pred HHHHHhhcCeECHHHHHHhhCC
Confidence 3677888899999999876544
No 23
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=55.18 E-value=19 Score=23.52 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHhcCCC
Q 047499 104 FQARVLKRMVEAGFIDIETALWVLKQPL 131 (152)
Q Consensus 104 r~~~vL~~m~~~g~it~~~~~~a~~~p~ 131 (152)
..+.|++.|.+.|++|.++++.....+-
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~~~~ 41 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRSEST 41 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHcCCC
Confidence 4467999999999999999999877553
No 24
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=55.10 E-value=43 Score=24.62 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 047499 98 CSRGKTFQARVLKRMVEAGFIDIETALWV 126 (152)
Q Consensus 98 ~~~~~~r~~~vL~~m~~~g~it~~~~~~a 126 (152)
......+.+.+.+.|++.|-|+.+|+.+.
T Consensus 19 ~a~~~ek~~klvDelVkkGeln~eEak~~ 47 (108)
T COG3937 19 AAETAEKVQKLVDELVKKGELNAEEAKRF 47 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44567788899999999999999998764
No 25
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=54.93 E-value=37 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhcCCCCCCCCchhhHHHHHHHhh
Q 047499 105 QARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLLYLLS 149 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~~~~~~~d~~~~~~~ 149 (152)
.+.+|+.|.+.|.|+.+|.+.... | .......+-.+++.+.
T Consensus 16 V~~~Ld~ll~~G~is~~Ecd~Ir~-p---~~T~sqqARrLLD~V~ 56 (81)
T cd08788 16 VDGALELLLTRGFFSSYDCDEIRL-P---IFTPSQQARRLLDLVK 56 (81)
T ss_pred HHHHHHHHHHcCCccHhhcchhhc-C---CCChHHHHHHHHHHHH
Confidence 467999999999999999988553 2 2223344445555443
No 26
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=48.51 E-value=31 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhcC
Q 047499 105 QARVLKRMVEAGFIDIETALWVLKQ 129 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~~~ 129 (152)
-+.|++.|++.|+||.++++.....
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~~ 42 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRSE 42 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcc
Confidence 3569999999999999999997763
No 27
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=47.96 E-value=26 Score=23.71 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHhcCCCC
Q 047499 107 RVLKRMVEAGFIDIETALWVLKQPLD 132 (152)
Q Consensus 107 ~vL~~m~~~g~it~~~~~~a~~~p~~ 132 (152)
.||+.|++.|++|.++++.-...+-.
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~t~ 49 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAATTK 49 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccCCh
Confidence 59999999999999999988776644
No 28
>PRK04031 DNA primase; Provisional
Probab=44.77 E-value=49 Score=29.64 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHhhcCCCCCCCCCCCCc--------HH------HHHHHHHHHHHHHHcCCCCHHHHHHHhcCCC
Q 047499 71 PSLLSMAEAAMLAGMIPAPDLRSPLKDC--------SR------GKTFQARVLKRMVEAGFIDIETALWVLKQPL 131 (152)
Q Consensus 71 ~~~Lt~~EaA~La~l~~~P~~y~P~~~~--------~~------~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~ 131 (152)
|+.|+.-|.|+||+++..=.+--|+... -+ -.+|...+|..|.+.+.++..+.-.-..+.+
T Consensus 73 pSsLDrvETAilAA~lEtIdRVGPc~A~i~v~~IeDvR~~Kr~~IveRAkeil~~~~~e~~~~s~ei~~ev~e~v 147 (408)
T PRK04031 73 PSSLDRVETAILAAALETIDRVGPCRAKIEVTEIEDVRAEKRKKIVERAKEILKKWFDEKVPDSKEIIEEVREAV 147 (408)
T ss_pred cCcccHHHHHHHHHHHhhhhccccceeEEEEEEeeehHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHh
Confidence 6899999999999999988888887421 12 2345556999999999999888765544433
No 29
>PF13730 HTH_36: Helix-turn-helix domain
Probab=44.09 E-value=70 Score=19.28 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=27.9
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCCc--H-------HHHHHHHHHHHHHHHcCCC
Q 047499 73 LLSMAEAAMLAGMIPAPDLRSPLKDC--S-------RGKTFQARVLKRMVEAGFI 118 (152)
Q Consensus 73 ~Lt~~EaA~La~l~~~P~~y~P~~~~--~-------~~~~r~~~vL~~m~~~g~i 118 (152)
+||..|.+++..|..-.+...- ..| + ..+....+.++.|.+.|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~-~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGG-CFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 6888888888777654322211 222 1 1244455789999999986
No 30
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.81 E-value=38 Score=23.53 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQPL 131 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p~ 131 (152)
+.|++.|++.|++|.++++.....|-
T Consensus 23 ~~v~~~L~~~gvlt~~~~~~I~~~~t 48 (90)
T cd08332 23 DELLIHLLQKDILTDSMAESIMAKPT 48 (90)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCC
Confidence 35999999999999999998877663
No 31
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=43.72 E-value=29 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHh
Q 047499 105 QARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
...=|+.|++.|+|+.+++..|.
T Consensus 30 M~~El~~Ly~~~lidk~~y~~A~ 52 (62)
T PF06014_consen 30 MEIELKELYKSGLIDKKEYLTAK 52 (62)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH
Confidence 34457999999999999999885
No 32
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=43.60 E-value=42 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhcCCC
Q 047499 105 QARVLKRMVEAGFIDIETALWVLKQPL 131 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~~~p~ 131 (152)
-++|++.|++.|++|.++.+.....|-
T Consensus 18 ~~~l~d~L~q~~VLt~~d~EeI~~~~t 44 (86)
T cd08785 18 PSRLTPYLRQCKVLDEQDEEEVLSSPR 44 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCc
Confidence 346999999999999999999887655
No 33
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=41.61 E-value=38 Score=24.85 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCC--CCCCCHHHHHHHhhcCCCCCCCCCCCCcHHH-------HHHHHHHHHHHHHcCCCCHHH
Q 047499 59 IESASIFYFGKH--PSLLSMAEAAMLAGMIPAPDLRSPLKDCSRG-------KTFQARVLKRMVEAGFIDIET 122 (152)
Q Consensus 59 v~aAA~~yFgk~--~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~-------~~r~~~vL~~m~~~g~it~~~ 122 (152)
+......+|+.. ..+||..|...|..+-..|. ..+... +....+++++|.+.|+|....
T Consensus 21 ~~~~~~~~~~~~l~~~glt~~q~~vL~~l~~~~~-----~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~ 88 (144)
T PRK11512 21 VNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAAC-----ITPVELKKVLSVDLGALTRMLDRLVCKGWVERLP 88 (144)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 334444444443 45799999999998854332 122222 333457999999999997654
No 34
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=41.39 E-value=22 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHH
Q 047499 101 GKTFQARVLKRMVEAGFIDIETA 123 (152)
Q Consensus 101 ~~~r~~~vL~~m~~~g~it~~~~ 123 (152)
+-.|..++++.|.+.|+|++.+-
T Consensus 33 GynrAariid~LE~~GiVs~~~~ 55 (65)
T PF09397_consen 33 GYNRAARIIDQLEEEGIVSPANG 55 (65)
T ss_dssp -HHHHHHHHHHHHHCTSBE---T
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC
Confidence 35577789999999999998753
No 35
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=39.98 E-value=44 Score=20.98 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHcC--CCCHHHHHHHhcCCCCCCCCchhhHHHHHHHhh
Q 047499 108 VLKRMVEAG--FIDIETALWVLKQPLDLRDDGKKYADRLLYLLS 149 (152)
Q Consensus 108 vL~~m~~~g--~it~~~~~~a~~~p~~~~~~~~~~~d~~~~~~~ 149 (152)
|.+-+.+.| .+|.+|....... .....+.+.|++++-|+
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~---~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT---SNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC---T-TTHHHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC---CCcchHHHHHHHHHHhC
Confidence 678888886 8999998886652 55667889999988663
No 36
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=36.82 E-value=34 Score=20.96 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=30.9
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCCc------HHHHHHHHHHHHHHHHcCCCCH
Q 047499 73 LLSMAEAAMLAGMIPAPDLRSPLKDC------SRGKTFQARVLKRMVEAGFIDI 120 (152)
Q Consensus 73 ~Lt~~EaA~La~l~~~P~~y~P~~~~------~~~~~r~~~vL~~m~~~g~it~ 120 (152)
+||..|..+|..+-..|.. +.+-. ...+....++++.|.+.|+|..
T Consensus 2 glt~~q~~vL~~l~~~~~~--~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r 53 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE--ELTQSELAERLGISKSTVSRIVKRLEKKGLVER 53 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS--GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHHHHHHCCCC--CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5888888888888777763 01111 1124455679999999999854
No 37
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=36.18 E-value=45 Score=20.49 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.0
Q ss_pred HHHHHHcCCCCHHHHHHHhc
Q 047499 109 LKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 109 L~~m~~~g~it~~~~~~a~~ 128 (152)
+...+..|.||++|++..-.
T Consensus 23 v~~~V~~~~IT~eey~eITG 42 (45)
T TIGR01669 23 VNKFVEKKLITREQYKVITG 42 (45)
T ss_pred HHHHhhcCccCHHHHHHHhC
Confidence 56777888888888876543
No 38
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=35.99 E-value=49 Score=21.13 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q 047499 73 LLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFID 119 (152)
Q Consensus 73 ~Lt~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it 119 (152)
.+|..|.|-++|+ .....+++|+.|.+.|+|+
T Consensus 28 ~lt~~~iA~~~g~---------------sr~tv~r~l~~l~~~g~I~ 59 (76)
T PF13545_consen 28 PLTQEEIADMLGV---------------SRETVSRILKRLKDEGIIE 59 (76)
T ss_dssp ESSHHHHHHHHTS---------------CHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHCC---------------CHHHHHHHHHHHHHCCCEE
Confidence 5788888888876 3456789999999999985
No 39
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=35.91 E-value=60 Score=22.62 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
+++++.|.+.|++|.++.+.....|
T Consensus 19 ~~l~d~L~s~~ILt~~d~EeI~~~~ 43 (84)
T cd08810 19 DRHFDYLRSKRILTRDDCEEISCRT 43 (84)
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccC
Confidence 4599999999999999999988766
No 40
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=33.18 E-value=81 Score=22.93 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=27.1
Q ss_pred hCCCCCCCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q 047499 67 FGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFID 119 (152)
Q Consensus 67 Fgk~~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it 119 (152)
|+-.+..+|++|.|-+-.. ..+....+|++|.+.|+|+
T Consensus 13 ~~~~~~~vtl~elA~~l~c---------------S~Rn~r~lLkkm~~~gWi~ 50 (115)
T PF12793_consen 13 YGGQPVEVTLDELAELLFC---------------SRRNARTLLKKMQEEGWIT 50 (115)
T ss_pred cCCCCcceeHHHHHHHhCC---------------CHHHHHHHHHHHHHCCCee
Confidence 3455667888888876633 2334557999999999985
No 41
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=32.63 E-value=35 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHH
Q 047499 100 RGKTFQARVLKRMVEAGFIDIETA 123 (152)
Q Consensus 100 ~~~~r~~~vL~~m~~~g~it~~~~ 123 (152)
-+-.|..++++.|.+.|+|++.+-
T Consensus 31 IGynrAariid~lE~~GiV~p~~g 54 (63)
T smart00843 31 IGYNRAARLIDQLEEEGIVGPANG 54 (63)
T ss_pred cchhHHHHHHHHHHHCcCCCCCCC
Confidence 345677889999999999987653
No 42
>PF14038 YqzE: YqzE-like protein
Probab=31.78 E-value=32 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=12.2
Q ss_pred chHHHHHhhhcCCCCCHHHHH
Q 047499 4 ATWQLVKNTFLKNERTISRKI 24 (152)
Q Consensus 4 ITqQlakn~~~~~~rt~~rK~ 24 (152)
||||+|+- .+.++.-+++-
T Consensus 9 ~Tqq~V~Y--mdtPkeERk~~ 27 (54)
T PF14038_consen 9 MTQQFVKY--MDTPKEERKER 27 (54)
T ss_pred HHHHHHHH--hhCCHHHHHHH
Confidence 79999994 35555544443
No 43
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.40 E-value=78 Score=21.76 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
+.|++.|++.|++|.++.+....++
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~ 43 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAG 43 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 4699999999999999998877655
No 44
>COG3462 Predicted membrane protein [Function unknown]
Probab=31.11 E-value=69 Score=23.73 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.2
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
+++-..-|+.++-. ....|...||+.=...|-||+||+.+-.+
T Consensus 71 ~~g~~r~~~~~d~~----e~~sRA~eIlkER~AkGEItEEEY~r~~~ 113 (117)
T COG3462 71 ILGAVRRGSDDDDA----ERGSRAEEILKERYAKGEITEEEYRRIIR 113 (117)
T ss_pred HHHHhcccchhccc----ccccHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34444556655422 22356677898889999999999988654
No 45
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=31.04 E-value=1e+02 Score=21.24 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHH
Q 047499 69 KHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIE 121 (152)
Q Consensus 69 k~~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~ 121 (152)
+....+|..|.|-++|+- +.-..++|+.|.+.|+|..+
T Consensus 43 ~~~~~is~~eLa~~~g~s---------------r~tVsr~L~~Le~~GlI~r~ 80 (95)
T TIGR01610 43 KKQDRVTATVIAELTGLS---------------RTHVSDAIKSLARRRIIFRQ 80 (95)
T ss_pred ccCCccCHHHHHHHHCcC---------------HHHHHHHHHHHHHCCCeeee
Confidence 456678888888888762 33467889999999999743
No 46
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=30.84 E-value=65 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCCHHHHHHHhcCC
Q 047499 108 VLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 108 vL~~m~~~g~it~~~~~~a~~~p 130 (152)
|++.|++.|+||.++++...++|
T Consensus 26 v~~~L~~~gIlT~~~~e~I~a~~ 48 (94)
T cd08327 26 VIQYLYQEGILTESHVEEIESQT 48 (94)
T ss_pred HHHHHHhCCCCCHHHHHHHHccC
Confidence 78889999999999999887665
No 47
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=30.65 E-value=99 Score=26.71 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHH-HHHHHHHc
Q 047499 37 ISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQAR-VLKRMVEA 115 (152)
Q Consensus 37 ~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~-vL~~m~~~ 115 (152)
-.+..-|..||-. ||.=-.-++.|-..||..=.=..|..+.|.+-.++-++. ++|.++..-...++.+ +...|+..
T Consensus 166 ~~rN~AiA~~l~~--~G~l~~dv~~al~~Y~~qCai~~~~~dLA~~g~~LA~~G-~~p~tge~v~~~~~ar~i~a~M~Tc 242 (309)
T COG2066 166 AFRNRAIAYLLKS--FGNLEHDVEEALDVYFHQCAIEMNCVDLARLGLFLANGG-VNPLTGERVVPADQARQINALMLTC 242 (309)
T ss_pred chhhHHHHHHHHh--CCccCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC-cCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 3456667777654 454334799999999998888999999999999888877 7899988877777766 88999999
Q ss_pred CCCCHHH
Q 047499 116 GFIDIET 122 (152)
Q Consensus 116 g~it~~~ 122 (152)
|.-+..-
T Consensus 243 GmYd~sG 249 (309)
T COG2066 243 GMYDASG 249 (309)
T ss_pred cccccch
Confidence 9876554
No 48
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.68 E-value=39 Score=30.63 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCcchHHHHHhhhcCCC--CCHHHHHHHHHHHHHHHHhCCHHHH---HHHHHhhhcc
Q 047499 1 MFQATWQLVKNTFLKNE--RTISRKIVEMVLALALERAISKWEI---LSSYVSKIYW 52 (152)
Q Consensus 1 ~STITqQlakn~~~~~~--rt~~rK~~E~~lA~~le~~~sK~eI---Le~YLN~v~~ 52 (152)
|+||.-|.+||++.... .++..-+-|+.-+-.++...-+++| |..|+..+..
T Consensus 433 ilTls~q~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqeeiNfRL~~yid~iil 489 (502)
T KOG0982|consen 433 ILTLSTQFLKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQEEINFRLKFYIDFIIL 489 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHhHHHH
Confidence 67999999999765443 5677778888888888888888888 8888877653
No 49
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=28.46 E-value=1.2e+02 Score=17.27 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 047499 101 GKTFQARVLKRMVEAGFI 118 (152)
Q Consensus 101 ~~~r~~~vL~~m~~~g~i 118 (152)
..+-..++|.++.++|+|
T Consensus 15 t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 15 TRETVSRILKKLERQGLI 32 (32)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 345567889999999876
No 50
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=28.22 E-value=1.1e+02 Score=19.47 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhc
Q 047499 106 ARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
..|-+...+.|++|++|++..+.
T Consensus 26 ~svre~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 26 RSVREVVLEEGLLTEEELDELLD 48 (55)
T ss_dssp --HHHHHHHTTSS-HHHHHHHTS
T ss_pred CCHHHHHHHcCCCCHHHHHHHcC
Confidence 34778888999999999998753
No 51
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=27.26 E-value=84 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHh
Q 047499 103 TFQARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 103 ~r~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
.-.+.||+.|.+.|+|+...+..+.
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~ 33 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESY 33 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3467899999999999999987663
No 52
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=25.92 E-value=72 Score=19.97 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499 104 FQARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 104 r~~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
|++.|++.+.+.|.++-++....+.
T Consensus 1 R~~~Il~~l~~~~~~s~~ela~~~~ 25 (57)
T PF08220_consen 1 RQQQILELLKEKGKVSVKELAEEFG 25 (57)
T ss_pred CHHHHHHHHHHcCCEEHHHHHHHHC
Confidence 6789999999999999999887654
No 53
>PHA02513 V1 structural protein V1; Reviewed
Probab=25.76 E-value=1.1e+02 Score=22.94 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHH----HhCCHHHHHHHH
Q 047499 21 SRKIVEMVLALALE----RAISKWEILSSY 46 (152)
Q Consensus 21 ~rK~~E~~lA~~le----~~~sK~eILe~Y 46 (152)
+.|+++...|+.++ +.++||||-|.+
T Consensus 2 ~s~~~~~~~~lkv~knp~kyft~eqi~ea~ 31 (135)
T PHA02513 2 WSKLKVTHEALKVAKNPYKYFTKEQIAEAT 31 (135)
T ss_pred chHHHHHHHHHHHhcChhhhcCHHHHHHHH
Confidence 46888999999999 889999999986
No 54
>PRK10026 arsenate reductase; Provisional
Probab=24.37 E-value=94 Score=23.55 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=44.5
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHhhhccCCcchhHHHH-HHHh--hCCCCCCCCHHHHH
Q 047499 12 TFLKNERTISRKIVEMVLALALE--------RAISKWEILSSYVSKIYWGHGIYGIESA-SIFY--FGKHPSLLSMAEAA 80 (152)
Q Consensus 12 ~~~~~~rt~~rK~~E~~lA~~le--------~~~sK~eILe~YLN~v~~G~~~~Gv~aA-A~~y--Fgk~~~~Lt~~EaA 80 (152)
+|....=+-.||..+++-+..++ ..+|++||..+-=. +|.+.-.+-.- +..| .|-+..++|..|
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~---~g~~~~~lint~~~~yr~L~~~~~~ls~~e-- 80 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIAD---MGISVRALLRKNVEPYEELGLAEDKFTDDQ-- 80 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHh---CCCCHHHHHHcCCchHHHcCCCccCCCHHH--
Confidence 34444445689999998887754 45799988766542 34322222111 1112 133334566555
Q ss_pred HHhhcCCCCCCC-CCC
Q 047499 81 MLAGMIPAPDLR-SPL 95 (152)
Q Consensus 81 ~La~l~~~P~~y-~P~ 95 (152)
++..|...|... +|.
T Consensus 81 ~l~ll~~~P~LIKRPI 96 (141)
T PRK10026 81 LIDFMLQHPILINRPI 96 (141)
T ss_pred HHHHHHhCccceeCcE
Confidence 667788888855 465
No 55
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=23.41 E-value=2e+02 Score=21.45 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=38.5
Q ss_pred cchhHHHHHHHhhCCCCCCCCHHHHHHHhhcCCCCCC--CCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 047499 55 GIYGIESASIFYFGKHPSLLSMAEAAMLAGMIPAPDL--RSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWV 126 (152)
Q Consensus 55 ~~~Gv~aAA~~yFgk~~~~Lt~~EaA~La~l~~~P~~--y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a 126 (152)
|..||..--+.|= +=.--+..|.| ++-+|.. |.|... ..-.-+..|+.+++.|.|++++++.-
T Consensus 43 GM~GvG~If~~Yr--~G~i~~DDEVA----v~~~p~~~g~~~ls~---plVniR~tl~~a~~~g~i~~~~~~~l 107 (120)
T PF07812_consen 43 GMIGVGRIFEWYR--DGEIEDDDEVA----VLHGPAELGYRPLSE---PLVNIRATLRAAVRAGIISEEEAAAL 107 (120)
T ss_pred CCEeehHHHHHHh--cCCcCCcccee----eeecCcccCCccccH---HHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4556666556662 22223445544 4445554 666643 33344567999999999999998764
No 56
>PF11046 HycA_repressor: Transcriptional repressor of hyc and hyp operons; InterPro: IPR021285 This family is conserved in Proteobacteria. It is likely to be the transcriptional repressor molecule for the hyc and hyp operons, which express, amongst others, the protein HycA. This protein may be harnessed for the reduction of technetium oxide, an unwelcome product of radio-nucleotide bioaccumulation. HycA produces formate hydrogenlyase, one of the key proteins necessary for metal compound reduction [].
Probab=23.27 E-value=58 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.6
Q ss_pred HhCCHHHHHHHHHhhh
Q 047499 35 RAISKWEILSSYVSKI 50 (152)
Q Consensus 35 ~~~sK~eILe~YLN~v 50 (152)
..-+|+++||-|||.+
T Consensus 108 ~nRDre~VLEHYL~KI 123 (148)
T PF11046_consen 108 SNRDREQVLEHYLEKI 123 (148)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3458999999999986
No 57
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=22.95 E-value=2.4e+02 Score=18.82 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHH--HHHcCCCCHHHHHHHhc
Q 047499 70 HPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKR--MVEAGFIDIETALWVLK 128 (152)
Q Consensus 70 ~~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~--m~~~g~it~~~~~~a~~ 128 (152)
+++.|+..|..++.-+... ..|+.=..-||.++.. +-..+.+|.+++.....
T Consensus 11 ~~~~l~~~E~~~~~e~~~~-------~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 11 DPDKLSEIEKQLCPEFFIG-------KTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIK 64 (86)
T ss_dssp TTTSS-HHHHHHCHHCTTS-------CHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTT
T ss_pred CcccCCHHHHHHhHHHhcc-------CChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHcc
Confidence 4578999999888876553 3466667889999888 77789999999977664
No 58
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=21.64 E-value=72 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=19.8
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHhhcC
Q 047499 61 SASIFYFGKHPSLLSMAEAAMLAGMI 86 (152)
Q Consensus 61 aAA~~yFgk~~~~Lt~~EaA~La~l~ 86 (152)
++.+.+=.+++++||++|=.+|-.|+
T Consensus 62 ~~ir~i~~~pL~~lTpEEDFiLG~mL 87 (101)
T PF09633_consen 62 EVIRSIVTRPLNELTPEEDFILGIML 87 (101)
T ss_dssp HHHHHHHTS-GGG--HHHHHHHHHHT
T ss_pred HHHHHHhCCchhhCCcHHHHHHHHHh
Confidence 46677778999999999999999887
No 59
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=21.37 E-value=84 Score=25.52 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=35.9
Q ss_pred HHhhCCCCCCCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHH
Q 047499 64 IFYFGKHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123 (152)
Q Consensus 64 ~~yFgk~~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~ 123 (152)
-.+|...+..|++.|.|-..+++++ -..++|..|++.|++..+..
T Consensus 10 L~~l~~~~~~l~l~ela~~~glpks---------------T~~RlL~tL~~~G~v~~d~~ 54 (246)
T COG1414 10 LDLLAEGPGGLSLAELAERLGLPKS---------------TVHRLLQTLVELGYVEQDPE 54 (246)
T ss_pred HHHHHhCCCCCCHHHHHHHhCcCHH---------------HHHHHHHHHHHCCCEEEcCC
Confidence 3567777777999999999999754 23467999999999987763
No 60
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=21.28 E-value=1.5e+02 Score=21.23 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=30.2
Q ss_pred hccCCcchhHHHHHHHhhCCCCCCCCHHHHH-HHhhcCCC
Q 047499 50 IYWGHGIYGIESASIFYFGKHPSLLSMAEAA-MLAGMIPA 88 (152)
Q Consensus 50 v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA-~La~l~~~ 88 (152)
--|-.|+-.+.+.|+.-|||+..+|+.+|-. +|..+-++
T Consensus 47 ~~~~~gl~~ld~~a~~~~g~~F~~l~~~~~~~lL~~~~~~ 86 (131)
T PF13618_consen 47 RAFRAGLAALDAYAQKRYGKSFAELSPAQREALLDALEKS 86 (131)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHhc
Confidence 4455677789999999999999999998865 44555444
No 61
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=21.28 E-value=1.6e+02 Score=16.73 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHh
Q 047499 105 QARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 105 ~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
+..|++.+.+.|.++..+....+
T Consensus 2 ~~~il~~l~~~~~~s~~~l~~~l 24 (53)
T smart00420 2 QQQILELLAQQGKVSVEELAELL 24 (53)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHH
Confidence 45677777777777777777765
No 62
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=21.06 E-value=1.5e+02 Score=18.57 Aligned_cols=25 Identities=28% Similarity=0.152 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHhcCCCC
Q 047499 107 RVLKRMVEAGFIDIETALWVLKQPLD 132 (152)
Q Consensus 107 ~vL~~m~~~g~it~~~~~~a~~~p~~ 132 (152)
...++|.+.| ||.++...++..+-.
T Consensus 5 Ha~~rm~eR~-Is~~~I~~~l~~g~i 29 (73)
T PF14076_consen 5 HARERMQERG-ISEEDIEDALENGEI 29 (73)
T ss_pred HHHHHHHhCC-CCHHHHHHHHhcCeE
Confidence 4577888888 999999998876643
No 63
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=20.96 E-value=2e+02 Score=18.03 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHH
Q 047499 101 GKTFQARVLKRMVEAGFIDIETALW 125 (152)
Q Consensus 101 ~~~r~~~vL~~m~~~g~it~~~~~~ 125 (152)
-+.+.-.+|...+..|.||.+|++.
T Consensus 7 dR~~~~~~L~~a~a~GrL~~~Ef~~ 31 (53)
T PF08044_consen 7 DRERAVDLLRAAFAEGRLSLDEFDE 31 (53)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3455667899999999999999875
No 64
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.34 E-value=1.6e+02 Score=19.85 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHh
Q 047499 96 KDCSRGKTFQARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 96 ~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
.++....+=...=|.+|.+.|+++++++..|.
T Consensus 21 g~r~~~iemm~~El~~ly~~~ll~Ke~yl~a~ 52 (68)
T COG4483 21 GKRLYDIEMMQIELSELYDSGLLDKEDYLRAR 52 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34555555566678999999999999998874
Done!