Query 047499
Match_columns 152
No_of_seqs 129 out of 1086
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oqo_A Penicillin-binding prot 100.0 1.5E-52 5E-57 333.6 13.5 127 2-128 73-199 (200)
2 3hzs_A Monofunctional glycosyl 100.0 1.9E-51 6.6E-56 328.9 14.9 127 2-128 73-206 (209)
3 3vmt_A Monofunctional glycosyl 100.0 2E-50 6.9E-55 331.9 13.5 128 2-129 126-260 (263)
4 3fwm_A Penicillin-binding prot 100.0 4.2E-49 1.4E-53 362.1 11.1 148 2-149 213-370 (751)
5 3udf_A Penicillin-binding prot 100.0 2E-48 6.7E-53 356.8 11.8 148 2-149 92-246 (731)
6 2jch_A Penicillin-binding prot 100.0 4E-47 1.4E-51 347.4 1.4 147 2-148 107-276 (720)
7 2olv_A Penicillin-binding prot 100.0 7.6E-44 2.6E-48 323.6 15.6 148 2-149 89-253 (669)
8 1qme_A Penicillin-binding prot 98.9 1.5E-10 5.2E-15 104.9 -0.1 76 17-98 67-145 (702)
9 2y2m_A PBP1B, penicillin-bindi 98.3 2.2E-08 7.7E-13 88.0 -4.2 55 69-123 3-69 (494)
10 2xf7_A GP23.1; viral protein; 55.9 16 0.00054 22.1 3.6 27 107-133 22-48 (51)
11 2p1h_A APAF-1, apoptotic prote 41.8 24 0.00084 23.0 3.3 25 106-130 25-49 (94)
12 4fx0_A Probable transcriptiona 41.3 37 0.0013 23.7 4.5 66 72-137 29-101 (148)
13 2nn4_A Hypothetical protein YQ 39.2 25 0.00084 23.1 2.9 27 101-127 27-53 (72)
14 1vzm_A Osteocalcin; calcium-bi 38.1 18 0.00062 21.6 1.9 16 56-71 29-44 (45)
15 4gwp_D Mediator of RNA polymer 35.1 8.9 0.00031 27.6 0.2 24 4-29 61-84 (121)
16 1nh2_D Transcription initiatio 34.2 39 0.0013 24.2 3.6 39 88-127 2-40 (121)
17 1dgn_A Iceberg (protease inhib 33.1 34 0.0012 22.7 2.9 40 106-145 22-61 (89)
18 4i16_A Caspase recruitment dom 31.7 52 0.0018 22.4 3.7 25 106-130 23-47 (93)
19 2d28_C XPSE, type II secretion 31.2 33 0.0011 23.8 2.8 23 107-129 9-31 (149)
20 3kae_A CDC27, possible protein 30.6 24 0.00082 27.7 2.0 50 19-70 171-222 (242)
21 4e9m_A Nucleotide-binding olig 29.7 53 0.0018 24.3 3.7 23 106-128 44-66 (144)
22 3nqo_A MARR-family transcripti 29.0 19 0.00065 26.3 1.2 46 72-120 37-89 (189)
23 1q8h_A Osteocalcin; helix-turn 28.6 23 0.0008 21.5 1.3 14 56-69 35-48 (49)
24 3fap_B FRAP, FKBP12-rapamycin 27.7 25 0.00085 24.0 1.5 13 57-69 11-23 (94)
25 3r84_B Mediator of RNA polymer 27.7 14 0.00049 25.3 0.2 23 5-29 65-87 (92)
26 1v2z_A Circadian clock protein 27.6 89 0.003 21.9 4.4 50 5-54 2-54 (111)
27 4a0z_A Transcription factor FA 26.7 75 0.0026 23.8 4.2 28 101-128 10-37 (190)
28 1g2y_A Hepatocyte nuclear fact 26.2 82 0.0028 17.4 3.2 23 23-45 7-29 (32)
29 4aik_A Transcriptional regulat 25.4 15 0.00051 26.0 0.0 44 72-119 27-77 (151)
30 3nrv_A Putative transcriptiona 25.4 56 0.0019 22.0 3.1 58 59-121 20-87 (148)
31 3kat_A Nacht, LRR and PYD doma 25.2 48 0.0016 23.0 2.6 24 106-130 37-60 (107)
32 3c1d_A Protein ORAA, regulator 23.2 72 0.0025 22.9 3.5 24 103-126 47-70 (159)
33 1okr_A MECI, methicillin resis 23.0 17 0.00057 24.3 -0.1 49 69-121 3-61 (123)
34 2nz7_A NOD1, caspase recruitme 22.4 64 0.0022 21.8 2.8 21 107-128 31-51 (98)
35 2ve8_A FTSK, DNA translocase F 21.6 60 0.0021 21.2 2.4 22 102-123 38-59 (73)
36 3ygs_P Procaspase 9; apoptosis 21.1 67 0.0023 21.3 2.7 23 107-129 25-47 (97)
37 3crd_A Raidd; caspase recruitm 20.8 55 0.0019 21.8 2.2 23 108-130 26-48 (100)
No 1
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB: 3d3h_A* 3nb7_A 3nb6_A
Probab=100.00 E-value=1.5e-52 Score=333.60 Aligned_cols=127 Identities=43% Similarity=0.606 Sum_probs=125.5
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+++++++|+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||++++||++|||+
T Consensus 73 STITqQlaKn~~l~~~rt~~RK~~E~~~A~~lE~~~sK~eILe~YLN~i~fG~g~yGi~aAa~~YFgk~~~~Lt~~EaA~ 152 (200)
T 2oqo_A 73 STITQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQVYFGKHVWELSLDEAAL 152 (200)
T ss_dssp CCHHHHHHHTTSSSCCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHSSCGGGCCHHHHHH
T ss_pred CHHHHHHHHHhccCccccHhHHHHHHHHHHHHHHHcCHHHHHHHHHhhccCCCcchHHHHHHHHHhCCChhhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
||||+++|+.|+|.+||+.+++||+.||++|++.|+||++|++.|..
T Consensus 153 La~l~~~P~~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~~~~~A~~ 199 (200)
T 2oqo_A 153 LAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYEEAVN 199 (200)
T ss_dssp HHHSTTCHHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHT
T ss_pred HhccccCCccCCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999875
No 2
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=100.00 E-value=1.9e-51 Score=328.91 Aligned_cols=127 Identities=29% Similarity=0.431 Sum_probs=124.8
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCC-------CCCC
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKH-------PSLL 74 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~-------~~~L 74 (152)
||||||||||+|++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||++||||+ +++|
T Consensus 73 STITQQlaKn~~l~~~rt~~RK~~E~~lA~~lE~~~sK~eILe~YLN~i~fG~g~yGi~aAa~~YFgk~~~~~~~~~~~L 152 (209)
T 3hzs_A 73 STITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHI 152 (209)
T ss_dssp CCHHHHHHHHHBCCCCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTSSCCBTTBCSHHHHHHHHHSCBCCTTCSSSCBC
T ss_pred chHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCCcccccCChhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 5899
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499 75 SMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 75 t~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
|++|||+|||++++|+.|+|.++|+++++||+.||++|++.|+||++|++.|..
T Consensus 153 tl~EaA~LAgl~~~Ps~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~A~~ 206 (209)
T 3hzs_A 153 TVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMS 206 (209)
T ss_dssp CHHHHHHHHHHTTSTTTCCSSSCCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CHHHHHHHhhhccCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875
No 3
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=100.00 E-value=2e-50 Score=331.91 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=125.5
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCC-------CCCC
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKH-------PSLL 74 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~-------~~~L 74 (152)
||||||||||+|++++||+.||++|+++|++||+.|||+||||+|||.+|||+|+|||++||+.||||+ +++|
T Consensus 126 STITQQlaKn~~l~~~rt~~RK~~E~~lA~~lE~~~sK~eILe~YLN~iyfG~g~yGieaAA~~YFgK~~~~~n~~~~~L 205 (263)
T 3vmt_A 126 STITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHI 205 (263)
T ss_dssp CCHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHHHHSCHHHHHHHHHTSSCCSTTCCSHHHHHHHHHSCBCCTTCCSSCBC
T ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCCcccccCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 5899
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcC
Q 047499 75 SMAEAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQ 129 (152)
Q Consensus 75 t~~EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~ 129 (152)
|++|||+|||++++|+.|+|.++++++++||+.||++|++.|+||++|++.|..+
T Consensus 206 tl~EaA~LAgl~~~Ps~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~A~~e 260 (263)
T 3vmt_A 206 TVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ 260 (263)
T ss_dssp CHHHHHHHHHHHHSCTTCCTTSCCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CHHHHHHHhhhccCccccCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999764
No 4
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Probab=100.00 E-value=4.2e-49 Score=362.06 Aligned_cols=148 Identities=30% Similarity=0.423 Sum_probs=120.2
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCC----cchhHHHHHHHhhCCCCCCCCHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGH----GIYGIESASIFYFGKHPSLLSMA 77 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~----~~~Gv~aAA~~yFgk~~~~Lt~~ 77 (152)
||||||||||+|++++||+.||++|+++|++||++|||+||||+|||.+|||+ |+|||++||++||||++++||++
T Consensus 213 STITqQlakn~~l~~~rt~~rK~~E~~~A~~le~~~sK~eILe~YLN~i~~G~~g~~~~~Gi~aAa~~yFgk~~~~Lt~~ 292 (751)
T 3fwm_A 213 STLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLD 292 (751)
T ss_dssp -CHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTTCEEEEETTEEEESHHHHHHHHTSSCGGGCCHH
T ss_pred ChHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHhhcCCCCCCcchhHHHHHHHHhCCCchhCCHH
Confidence 99999999999999999999999999999999999999999999999999997 59999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCC------CCchhhHHHHHHHhh
Q 047499 78 EAAMLAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLR------DDGKKYADRLLYLLS 149 (152)
Q Consensus 78 EaA~La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~------~~~~~~~d~~~~~~~ 149 (152)
|+|+||||+++|+.|||++||+++++||+.||++|++.|+||++|++.|..+|+.+. ...|+|.|.|.+||.
T Consensus 293 eaA~Lagl~~~Ps~y~P~~~p~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~pl~~~~~~~~~~~~p~f~~~v~~~l~ 370 (751)
T 3fwm_A 293 QQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQ 370 (751)
T ss_dssp HHHHHHHHTTCTTTSCTTTCSHHHHHHHHHHHTC---------------------------CCSSSHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCccccCCccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCCccccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999764 347999999999874
No 5
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase; HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A* 3udx_A* 3ue0_A* 3ue1_A*
Probab=100.00 E-value=2e-48 Score=356.80 Aligned_cols=148 Identities=34% Similarity=0.480 Sum_probs=109.0
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+|++++||+.||++|+++|++||++|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus 92 STITqQl~kn~~l~~~~t~~rK~~E~~~A~~le~~~sK~~ILe~YLN~i~~G~~~~Gi~aAa~~yFgk~~~~L~~~eaA~ 171 (731)
T 3udf_A 92 STITMQVAKNYYLSPERTLKRKITEIFLARKIEQNLSKEDILSLYVNKIFLGKNAYGIAAAAKIYYNKSINELSIAQMAM 171 (731)
T ss_dssp ----------------------------------CHHHHHHHHHHTTTCBCSTTBBSHHHHHHHHHSCCGGGCCHHHHHH
T ss_pred chHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcccCCcchHHHHHHHHHhCCChhhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-------CchhhHHHHHHHhh
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-------DGKKYADRLLYLLS 149 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-------~~~~~~d~~~~~~~ 149 (152)
||||+++|+.|+|++||+++++||+.||++|++.|+||++|++.|..+|+.+.. ..|+|.|.|.++|.
T Consensus 172 La~~~~~P~~y~p~~~~~~a~~rr~~vL~~m~~~g~It~~e~~~A~~~pl~~~~~~~~~~~~a~y~~~~vr~~l~ 246 (731)
T 3udf_A 172 IAGLPKAPSKYNPVVNPERALERRNWILGRMLQLGYISQAEYQKAVAEPINLNMPNRDLNNIHPYAGEMVRSELV 246 (731)
T ss_dssp HHTSTTCTTTSCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHSCCCCCCCCCEECCSSHHHHHHHHHHHH
T ss_pred HhhhccCccccCCcCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCcccccCCCCcccCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997642 46899999988764
No 6
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*
Probab=100.00 E-value=4e-47 Score=347.38 Aligned_cols=147 Identities=30% Similarity=0.306 Sum_probs=7.9
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCc-----chhHHHHHHHhhCCCCCCCCH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHG-----IYGIESASIFYFGKHPSLLSM 76 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~-----~~Gv~aAA~~yFgk~~~~Lt~ 76 (152)
||||||||||++++++||+.||++|+++|++||++||||||||+|||.+|||+| +|||++||+.||||++++||+
T Consensus 107 STITQQlaKn~~l~~~~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~i~fG~~~~g~~~yGv~aAa~~YFgk~~~~Ltl 186 (720)
T 2jch_A 107 STLTQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGARQAAEGIFGVDASQLTV 186 (720)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHHHHHHhccCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHhhcccCCCCCccccHhHHHHHHHHhCCChhhCCH
Confidence 999999999999999999999999999999999999999999999999999985 699999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCc---------HHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC---------Cch
Q 047499 77 AEAAMLAGMIPAPDLRSPLKDC---------SRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD---------DGK 138 (152)
Q Consensus 77 ~EaA~La~l~~~P~~y~P~~~~---------~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~---------~~~ 138 (152)
+|+|+||||+++|+.|||++|| +++++||+.||++|++.|+||++|++.|..+|+.... ..|
T Consensus 187 ~EaA~Lagl~~~Ps~y~P~~~~~~~~~~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~l~~~~~~~~~~~~~~~~ 266 (720)
T 2jch_A 187 PQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLYSMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISQD 266 (720)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHhCcCCCCcccCCccChhhhhcchhhHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCccccccccccccccccc
Confidence 9999999999999999999876 4566999999999999999999999999999986431 346
Q ss_pred hhHHHHHHHh
Q 047499 139 KYADRLLYLL 148 (152)
Q Consensus 139 ~~~d~~~~~~ 148 (152)
.+.|.|..++
T Consensus 267 y~~~~v~~~~ 276 (720)
T 2jch_A 267 YLYFTTLAEA 276 (720)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 7788777654
No 7
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme transferase; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=100.00 E-value=7.6e-44 Score=323.62 Aligned_cols=148 Identities=29% Similarity=0.335 Sum_probs=139.4
Q ss_pred CcchHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHH
Q 047499 2 FQATWQLVKNTFLKNERTISRKIVEMVLALALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAM 81 (152)
Q Consensus 2 STITqQlakn~~~~~~rt~~rK~~E~~lA~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~ 81 (152)
||||||||||+|+++++|+.||++|+++|++||.+|||+||||+|||.+|||+|+|||++||++||||++++||++|+|+
T Consensus 89 STiTqQl~k~~~l~~~~t~~rK~~E~~~a~~le~~~sK~~Ile~YlN~i~~g~~~~Gv~aAa~~yFgk~~~~Ltl~eaA~ 168 (669)
T 2olv_A 89 STLTQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAKYYFNKDLKDLNLAEEAY 168 (669)
T ss_dssp CCHHHHHHHTTTCCSCCTTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHCCCSTTCCHHHHHH
T ss_pred chHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhCCHHHHHHHhccccccCCCccCHHHHHHHHcCCChhHcCHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCC-----------------CchhhHHHH
Q 047499 82 LAGMIPAPDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVLKQPLDLRD-----------------DGKKYADRL 144 (152)
Q Consensus 82 La~l~~~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~-----------------~~~~~~d~~ 144 (152)
||||+++|+.|+|+++|+++++||+.||++|++.|+||++|++.|..+|+.... ..++|.|.+
T Consensus 169 LAgl~~~P~~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~l~~~~~~~~~e~~r~~~~~~~~~~~~~~~~~ 248 (669)
T 2olv_A 169 LAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWEDAKKIDLKANLVNRTPEERQNIDTNQDSEYNSYVNFV 248 (669)
T ss_dssp HHHGGGSHHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTSCTTTTCCCCCHHHHSCCCCCTTGGGHHHHHHH
T ss_pred HhhhccCccccCcccCHHHHHHHHHHHHHhccccCcCCHHHHHHHHcCCcccccccccccccccccccCccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875211 346788888
Q ss_pred HHHhh
Q 047499 145 LYLLS 149 (152)
Q Consensus 145 ~~~~~ 149 (152)
+.++.
T Consensus 249 ~~~~~ 253 (669)
T 2olv_A 249 KSELM 253 (669)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
No 8
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=98.90 E-value=1.5e-10 Score=104.95 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHH-HHHHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCCCCCCCHHHHHHHhhcC--CCCCCCC
Q 047499 17 ERTISRKIVEMVLA-LALERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKHPSLLSMAEAAMLAGMI--PAPDLRS 93 (152)
Q Consensus 17 ~rt~~rK~~E~~lA-~~le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~~~~Lt~~EaA~La~l~--~~P~~y~ 93 (152)
+++..||+.|++.+ +.||..++|++|++.|+|.++||.+.+||+.|+..||++++ |++.|+|+. +.|.+|.
T Consensus 67 ~~~~~~k~~e~l~~~l~l~~~~~k~~i~~~~~n~v~f~~~~~gi~~a~~~~~~~~~------~~~~l~Gi~~~~~~~R~y 140 (702)
T 1qme_A 67 EKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKEL------EAAEVKGIDFTTSPNRSY 140 (702)
T ss_dssp ---------------------------------------------------------------------------CEEEC
T ss_pred chhhHHHHHHHHHHHhCCCHHHHHHHHhhccccceEEEecccCCCHHHHHHHHHHH------HhcCCCcEEEEecceEEC
Confidence 45788999999997 89999999999999999999999999999999999999876 778899998 9999999
Q ss_pred CCCCc
Q 047499 94 PLKDC 98 (152)
Q Consensus 94 P~~~~ 98 (152)
|..+.
T Consensus 141 P~~~~ 145 (702)
T 1qme_A 141 PNGQF 145 (702)
T ss_dssp TTSSS
T ss_pred CCccc
Confidence 98654
No 9
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell WALL, peptidoglycan, inhibitor; HET: E08; 1.62A {Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A* 2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A* 2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Probab=98.27 E-value=2.2e-08 Score=88.03 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHhhcCCC------------CCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHH
Q 047499 69 KHPSLLSMAEAAMLAGMIPA------------PDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETA 123 (152)
Q Consensus 69 k~~~~Lt~~EaA~La~l~~~------------P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~ 123 (152)
|+++|||++|||+||||+++ |..++|+.+++.+.++|++||++|.+.|.|+++++
T Consensus 3 kd~~~L~~~E~A~lAgi~q~~~~~~~~~~~~~~~~~~p~~~~~~~~~ar~~vl~~l~~~~~i~~~~~ 69 (494)
T 2y2m_A 3 SSISEITYSDGTVIASIESDLLRQDFLPSGTVTGISRDYLYFTTLAEAQERMYDYLAQRDNVSAKEL 69 (494)
T ss_dssp --CCEEECTTSCEEEEC------------------CCSHHHHHHHHHHHHHHHHHHHHHTTCCTTGG
T ss_pred cchHhCCHHHhHHHHhcccchhhccccCccccchhhCCCcCHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 89999999999999999996 66678888899999999999999999999999886
No 10
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=55.86 E-value=16 Score=22.08 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHhcCCCCC
Q 047499 107 RVLKRMVEAGFIDIETALWVLKQPLDL 133 (152)
Q Consensus 107 ~vL~~m~~~g~it~~~~~~a~~~p~~~ 133 (152)
..|+..++.|-||++|++....-|+..
T Consensus 22 ~~mR~AV~~G~iTQ~E~D~I~~ypwga 48 (51)
T 2xf7_A 22 ELLRVAVNAGDLTQEEADKIMSYPWGA 48 (51)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTSCTTC
T ss_pred HHHHHHHhcCcccHHHHHHHHhCcccc
Confidence 356778899999999999999888754
No 11
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=41.82 E-value=24 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
+.|++.|.+.|++|.++.+....++
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~~ 49 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNEP 49 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 4699999999999999999887763
No 12
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=41.31 E-value=37 Score=23.72 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhhcCCCCCCC-CCCCCcHHH------HHHHHHHHHHHHHcCCCCHHHHHHHhcCCCCCCCCc
Q 047499 72 SLLSMAEAAMLAGMIPAPDLR-SPLKDCSRG------KTFQARVLKRMVEAGFIDIETALWVLKQPLDLRDDG 137 (152)
Q Consensus 72 ~~Lt~~EaA~La~l~~~P~~y-~P~~~~~~~------~~r~~~vL~~m~~~g~it~~~~~~a~~~p~~~~~~~ 137 (152)
.+||..|..+|..+-..|..- .|.+-.+-+ +....+++++|.+.|+|....-..-...-+.+....
T Consensus 29 ~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G 101 (148)
T 4fx0_A 29 SGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKG 101 (148)
T ss_dssp GTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHH
Confidence 468999999998887666432 233211211 333457999999999995443333333445544433
No 13
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=39.25 E-value=25 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHh
Q 047499 101 GKTFQARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 101 ~~~r~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
..+-...=|+.|++.|+|+.+++..|.
T Consensus 27 DielM~~El~~Ly~~~lId~~~y~~A~ 53 (72)
T 2nn4_A 27 EIEFMLDELKELYMNHMIEKEQWARAA 53 (72)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 334444558999999999999999884
No 14
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=38.09 E-value=18 Score=21.63 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.8
Q ss_pred chhHHHHHHHhhCCCC
Q 047499 56 IYGIESASIFYFGKHP 71 (152)
Q Consensus 56 ~~Gv~aAA~~yFgk~~ 71 (152)
.+|+.+|=+.|||.-|
T Consensus 29 ~~G~~~AY~ryfG~~~ 44 (45)
T 1vzm_A 29 AQGIVAAYQAFYGPIP 44 (45)
T ss_dssp HHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHcCCCC
Confidence 5899999999999654
No 15
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=35.11 E-value=8.9 Score=27.56 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=17.5
Q ss_pred chHHHHHhhhcCCCCCHHHHHHHHHH
Q 047499 4 ATWQLVKNTFLKNERTISRKIVEMVL 29 (152)
Q Consensus 4 ITqQlakn~~~~~~rt~~rK~~E~~l 29 (152)
=||||+|.+= +--.++|-++|-|+
T Consensus 61 qTmQLIKgvQ--DLLvlTRsIREKWl 84 (121)
T 4gwp_D 61 QTMQLIKNVQ--DLLILTRSIKEKWL 84 (121)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3899999752 22357888998876
No 16
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=34.16 E-value=39 Score=24.17 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=27.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHh
Q 047499 88 APDLRSPLKDCSRGKTFQARVLKRMVEAGFIDIETALWVL 127 (152)
Q Consensus 88 ~P~~y~P~~~~~~~~~r~~~vL~~m~~~g~it~~~~~~a~ 127 (152)
+|.+|.-++...-+..-.+ .|+.|+..|.|+++.+...+
T Consensus 2 ~~~~y~lYR~StiG~aL~d-tLdEli~~~~Isp~la~kVL 40 (121)
T 1nh2_D 2 VPGYYELYRRSTIGNSLVD-ALDTLISDGRIEASLAMRVL 40 (121)
T ss_dssp --CCCCGGGGSHHHHHHHH-HHHHHHHTTSSCHHHHHHHH
T ss_pred CcchHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHHH
Confidence 4666777766655555444 69999999999999987654
No 17
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=33.14 E-value=34 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCCCCCCCCchhhHHHHH
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQPLDLRDDGKKYADRLL 145 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p~~~~~~~~~~~d~~~ 145 (152)
+.+|+.|.+.++++.+|++.-....-..........|.|+
T Consensus 22 ~~lLD~Ll~~~VLn~~E~e~i~~~~~t~~dkar~LiD~V~ 61 (89)
T 1dgn_A 22 NALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDLVT 61 (89)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 4699999999999999999987764443444445555544
No 18
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=31.66 E-value=52 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
.+|+.-|.+.|+||.++.+....+|
T Consensus 23 ~~l~~yL~q~~VLt~~deEeI~~~~ 47 (93)
T 4i16_A 23 AKLTPYLRQCKVIDEQDEDEVLNAP 47 (93)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHSSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHhcCc
Confidence 4599999999999999999999988
No 19
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=31.19 E-value=33 Score=23.80 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHhcC
Q 047499 107 RVLKRMVEAGFIDIETALWVLKQ 129 (152)
Q Consensus 107 ~vL~~m~~~g~it~~~~~~a~~~ 129 (152)
.+.+.|++.|.||+++.+.|...
T Consensus 9 ~lg~~Lv~~g~it~~ql~~al~~ 31 (149)
T 2d28_C 9 RIVEALLERRRLKDTDLVRARQL 31 (149)
T ss_dssp HHHHHHHHTTSSCHHHHHHCCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 46677888888888888877543
No 20
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.56 E-value=24 Score=27.67 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHH--HHHhCCHHHHHHHHHhhhccCCcchhHHHHHHHhhCCC
Q 047499 19 TISRKIVEMVLALA--LERAISKWEILSSYVSKIYWGHGIYGIESASIFYFGKH 70 (152)
Q Consensus 19 t~~rK~~E~~lA~~--le~~~sK~eILe~YLN~v~~G~~~~Gv~aAA~~yFgk~ 70 (152)
+-.|-++|..+.-. +....|. +.++-|.|.+| |-|.|=|..||+.||+-.
T Consensus 171 ~~~~~i~~~y~~d~~~lHe~~s~-~~ikkY~n~iP-GiGSY~va~aa~~yf~lg 222 (242)
T 3kae_A 171 TGRRGIEEEYVSDSIEFHESLSP-SLVKKYMEHVP-GIGSYFISNAARRYFNLG 222 (242)
T ss_dssp ----CHHHHHHHHHHHHHHHCCH-HHHHHHHTSTT-THHHHHHHHHHHHHHHTT
T ss_pred hhhccchhhhhhhHHHHHHhccH-HHHHHHHHhCC-CchhHHHHHHHHHHHhcc
Confidence 34555777777644 4444665 78899999998 778899999999999843
No 21
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=29.69 E-value=53 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhc
Q 047499 106 ARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
+-+|+.|.+.|+|+.+|++....
T Consensus 44 ~~LLD~LL~~gvLs~EE~EiV~~ 66 (144)
T 4e9m_A 44 QCLVDNLLKNDYFSAEDAEIVCA 66 (144)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHhc
Confidence 34899999999999999976654
No 22
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=29.05 E-value=19 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhhcCCCCCCCCCCCCcHHH-------HHHHHHHHHHHHHcCCCCH
Q 047499 72 SLLSMAEAAMLAGMIPAPDLRSPLKDCSRG-------KTFQARVLKRMVEAGFIDI 120 (152)
Q Consensus 72 ~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~-------~~r~~~vL~~m~~~g~it~ 120 (152)
.+||..|..+|..+-..|. .|. .+... +....+++++|.+.|+|..
T Consensus 37 ~~lt~~q~~vL~~L~~~~~--~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 89 (189)
T 3nqo_A 37 GILTSRQYMTILSILHLPE--EET-TLNNIARKMGTSKQNINRLVANLEKNGYVDV 89 (189)
T ss_dssp CSSCHHHHHHHHHHHHSCG--GGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCCHHHHHHHHHHHhccC--CCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3599999999999876542 122 12221 3344579999999999853
No 23
>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite CRYS surface binding protein, calcium binding protein; HET: CGU; 2.00A {Sus scrofa} SCOP: g.32.1.1 PDB: 1q3m_A*
Probab=28.60 E-value=23 Score=21.51 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=12.6
Q ss_pred chhHHHHHHHhhCC
Q 047499 56 IYGIESASIFYFGK 69 (152)
Q Consensus 56 ~~Gv~aAA~~yFgk 69 (152)
.+|+.+|=+.|||.
T Consensus 35 ~~G~~~AY~ryfG~ 48 (49)
T 1q8h_A 35 HIGFQEAYRRFYGI 48 (49)
T ss_dssp HHCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCC
Confidence 47999999999995
No 24
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=27.70 E-value=25 Score=23.97 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=11.6
Q ss_pred hhHHHHHHHhhCC
Q 047499 57 YGIESASIFYFGK 69 (152)
Q Consensus 57 ~Gv~aAA~~yFgk 69 (152)
-|++.||+.|||-
T Consensus 11 e~LeeAsr~~f~~ 23 (94)
T 3fap_B 11 EGLEEASRLYFGE 23 (94)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 4899999999986
No 25
>3r84_B Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=27.66 E-value=14 Score=25.34 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=17.4
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHHHH
Q 047499 5 TWQLVKNTFLKNERTISRKIVEMVL 29 (152)
Q Consensus 5 TqQlakn~~~~~~rt~~rK~~E~~l 29 (152)
|+|++|.+ .+-=+++|-++|.|+
T Consensus 65 t~qLIrgv--QDLL~lTRsirEkWl 87 (92)
T 3r84_B 65 TMQLIKNV--QDLLILTRSIKEKWL 87 (92)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHH
Confidence 78999964 233468899999886
No 26
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=27.60 E-value=89 Score=21.94 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=35.2
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHhhhccCC
Q 047499 5 TWQLVKNTFLKNERTISRKIVEMVLALALERA---ISKWEILSSYVSKIYWGH 54 (152)
Q Consensus 5 TqQlakn~~~~~~rt~~rK~~E~~lA~~le~~---~sK~eILe~YLN~v~~G~ 54 (152)
+|+..||+-....+.+.+.++--+-.+.|... -+-.+-|+.++|.++|+.
T Consensus 2 ~~~f~r~l~~~er~~ll~~L~~~YR~ill~YF~~d~~~nq~Id~FVn~aFfad 54 (111)
T 1v2z_A 2 TAFFFRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFAD 54 (111)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC
Confidence 68889998765555666666655555555533 355788899999999976
No 27
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=26.72 E-value=75 Score=23.79 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHhc
Q 047499 101 GKTFQARVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 101 ~~~r~~~vL~~m~~~g~it~~~~~~a~~ 128 (152)
..+|++.|++.+.++|.++-++....+.
T Consensus 10 k~eR~~~i~~~l~~~~~~~~~~la~~~~ 37 (190)
T 4a0z_A 10 KDKRREAIRQQIDSNPFITDHELSDLFQ 37 (190)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEeHHHHHHHHC
Confidence 4679999999999999999999887655
No 28
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=26.23 E-value=82 Score=17.36 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Q 047499 23 KIVEMVLALALERAISKWEILSS 45 (152)
Q Consensus 23 K~~E~~lA~~le~~~sK~eILe~ 45 (152)
-+++-.+...|++-.|||.++..
T Consensus 7 ~LQ~eLL~aLL~SGlsKe~Liqa 29 (32)
T 1g2y_A 7 QLQTEMLAALLESGLSKEALIQA 29 (32)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHH
Confidence 36777788889999999988764
No 29
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=25.45 E-value=15 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHhhcCCCCCCCCCCCCcHHH-------HHHHHHHHHHHHHcCCCC
Q 047499 72 SLLSMAEAAMLAGMIPAPDLRSPLKDCSRG-------KTFQARVLKRMVEAGFID 119 (152)
Q Consensus 72 ~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~-------~~r~~~vL~~m~~~g~it 119 (152)
-+||..|..+|..+-..|... .+... +....+++++|.+.|+|.
T Consensus 27 ~gLt~~q~~vL~~L~~~~~~~----~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPPEQ----SQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCTTS----CHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHHHcCCCC----cHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 369999999998886543322 22222 334457999999999985
No 30
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=25.38 E-value=56 Score=22.01 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCCC---CCCCHHHHHHHhhcCCCCCCCCCCCCcHHH-------HHHHHHHHHHHHHcCCCCHH
Q 047499 59 IESASIFYFGKHP---SLLSMAEAAMLAGMIPAPDLRSPLKDCSRG-------KTFQARVLKRMVEAGFIDIE 121 (152)
Q Consensus 59 v~aAA~~yFgk~~---~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~-------~~r~~~vL~~m~~~g~it~~ 121 (152)
+.......|.+.. -+||..|..+|..+-..|. . ..... +....+++++|.+.|+|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~~~~~----~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 20 LANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASD----C-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHC----CCGGGTCCHHHHHHHHHHHHSSS----B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCC----C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4444555566554 2799999999998876652 2 22222 33345799999999999755
No 31
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=25.19 E-value=48 Score=23.01 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhcCC
Q 047499 106 ARVLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 106 ~~vL~~m~~~g~it~~~~~~a~~~p 130 (152)
+-||+.|.. ++|++++++...+++
T Consensus 37 ~~ILD~Ll~-~VLteee~e~I~ae~ 60 (107)
T 3kat_A 37 EVVLDKLHG-QVLSQEQYERVLAEN 60 (107)
T ss_dssp HHHHHHHTT-TTSCHHHHHHHHHCC
T ss_pred HHHHHHHHH-hhCCHHHHHHHHhCC
Confidence 349999997 699999999988765
No 32
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.20 E-value=72 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHH
Q 047499 103 TFQARVLKRMVEAGFIDIETALWV 126 (152)
Q Consensus 103 ~r~~~vL~~m~~~g~it~~~~~~a 126 (152)
.-.+.||+.|.+.|+||.+.+..+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~ 70 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVAR 70 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHH
Confidence 446789999999999999998866
No 33
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.98 E-value=17 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHHHHhhcCCCCCCCCCCCCcHHH----------HHHHHHHHHHHHHcCCCCHH
Q 047499 69 KHPSLLSMAEAAMLAGMIPAPDLRSPLKDCSRG----------KTFQARVLKRMVEAGFIDIE 121 (152)
Q Consensus 69 k~~~~Lt~~EaA~La~l~~~P~~y~P~~~~~~~----------~~r~~~vL~~m~~~g~it~~ 121 (152)
+...+||..|...|..+-..+ |..-.+-+ .....++|++|.+.|+|...
T Consensus 3 ~~~~~lt~~~~~vL~~l~~~~----~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 3 NKTYEISSAEWEVMNIIWMKK----YASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp -CCCCCCHHHHHHHHHHHHHS----SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cccccCCHHHHHHHHHHHhCC----CcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 445689999999888775432 22111111 33445799999999999654
No 34
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=22.41 E-value=64 Score=21.84 Aligned_cols=21 Identities=5% Similarity=0.221 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHhc
Q 047499 107 RVLKRMVEAGFIDIETALWVLK 128 (152)
Q Consensus 107 ~vL~~m~~~g~it~~~~~~a~~ 128 (152)
-+|+.|.+.|+|++++ .....
T Consensus 31 ~lLD~LL~~~VL~~ee-~~I~~ 51 (98)
T 2nz7_A 31 CLVDNLLKNDYFSAED-AEIVC 51 (98)
T ss_dssp HHHHHHHHTTSSCHHH-HHHHH
T ss_pred HHHHHHHHcCCCCHHH-HHHHc
Confidence 4899999999999999 66553
No 35
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.57 E-value=60 Score=21.17 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHH
Q 047499 102 KTFQARVLKRMVEAGFIDIETA 123 (152)
Q Consensus 102 ~~r~~~vL~~m~~~g~it~~~~ 123 (152)
-.|..++++.|.+.|+|++.+.
T Consensus 38 YnRAArlid~lE~~GiVgp~~g 59 (73)
T 2ve8_A 38 YNRAARMIEAMEMAGVVTPMNT 59 (73)
T ss_dssp HHHHHHHHHHHHHTTSBCCCCT
T ss_pred hHHHHHHHHHHHHCCcCCcccC
Confidence 4566789999999999987654
No 36
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.11 E-value=67 Score=21.29 Aligned_cols=23 Identities=0% Similarity=-0.003 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHhcC
Q 047499 107 RVLKRMVEAGFIDIETALWVLKQ 129 (152)
Q Consensus 107 ~vL~~m~~~g~it~~~~~~a~~~ 129 (152)
.|++.|++.|++|.++.+....+
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~~ 47 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQRA 47 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHhc
Confidence 38999999999999999988765
No 37
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=20.81 E-value=55 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCCHHHHHHHhcCC
Q 047499 108 VLKRMVEAGFIDIETALWVLKQP 130 (152)
Q Consensus 108 vL~~m~~~g~it~~~~~~a~~~p 130 (152)
|++.|++.|+||.++++....++
T Consensus 26 lld~L~~~~VLt~~~~e~I~~~~ 48 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEINAQT 48 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHHTTCS
T ss_pred HHHHHHHCCCCCHHHHHHHHcCC
Confidence 78899999999999999887764
Done!