BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047500
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
 pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
          Length = 632

 Score = 36.2 bits (82), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 81  LQALYNYGARKFVLIGVGQIGCSPNQLAQNSPDGRTCVKRVNDANVIFNNKLRGLVDQFN 140
           +QAL   GAR  V+  +  +G +P         G       +  +  FN +L   + Q  
Sbjct: 181 VQALQQAGARYIVVWLLPDLGLTPATF------GGPLQPFASQLSGTFNAELTAQLSQ-- 232

Query: 141 NNDSDAKFIYINAYGIFQDITANPARYGFRVTN--TGCCGVGRNNGQITCLPLQNPCPNR 198
              + A  I +N   + ++  ANPA +G        G C  G          +    P+ 
Sbjct: 233 ---AGANVIPLNIPLLLKEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDP 289

Query: 199 REYVFWDAFHPTEAANTIIATRSYS 223
            + +F D+ HPT     +IA  +YS
Sbjct: 290 SKLLFNDSVHPTITGQRLIADYTYS 314


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,423,047
Number of Sequences: 62578
Number of extensions: 318904
Number of successful extensions: 524
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 2
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)