Query 047502
Match_columns 145
No_of_seqs 130 out of 1165
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 11:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.2E-30 4.8E-35 157.0 15.2 140 1-144 16-155 (160)
2 KOG0027 Calmodulin and related 100.0 4E-28 8.7E-33 149.4 15.3 140 2-144 5-148 (151)
3 PTZ00183 centrin; Provisional 99.9 1.8E-25 3.9E-30 138.7 15.8 140 2-144 14-153 (158)
4 PTZ00184 calmodulin; Provision 99.9 4.9E-25 1.1E-29 135.4 15.7 140 2-144 8-147 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 1E-23 2.3E-28 125.7 14.0 141 2-145 30-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 5.1E-23 1.1E-27 121.9 14.7 136 2-144 29-164 (171)
7 KOG0030 Myosin essential light 99.9 3.6E-23 7.9E-28 120.6 13.2 139 2-144 8-150 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 7.8E-21 1.7E-25 119.1 14.3 137 2-144 30-174 (187)
9 KOG0037 Ca2+-binding protein, 99.8 2E-19 4.3E-24 112.8 14.4 130 5-144 57-187 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 4.6E-19 1E-23 111.3 14.0 138 5-144 26-174 (193)
11 KOG0036 Predicted mitochondria 99.8 1.9E-18 4.2E-23 117.2 13.6 134 2-144 11-145 (463)
12 KOG4223 Reticulocalbin, calume 99.6 2.4E-14 5.2E-19 95.0 9.0 140 2-143 74-226 (325)
13 PLN02964 phosphatidylserine de 99.6 9E-14 2E-18 101.4 12.6 102 2-108 140-243 (644)
14 KOG0027 Calmodulin and related 99.5 3.1E-13 6.7E-18 83.3 10.4 100 44-144 9-112 (151)
15 KOG4223 Reticulocalbin, calume 99.5 1.7E-13 3.7E-18 91.0 9.3 136 4-141 162-301 (325)
16 cd05022 S-100A13 S-100A13: S-1 99.5 1.5E-13 3.2E-18 76.7 6.7 65 79-144 7-74 (89)
17 KOG0377 Protein serine/threoni 99.5 9.1E-13 2E-17 91.0 11.7 137 4-144 463-614 (631)
18 COG5126 FRQ1 Ca2+-binding prot 99.5 1.2E-12 2.7E-17 79.9 11.1 99 44-144 21-119 (160)
19 PTZ00183 centrin; Provisional 99.5 1.6E-12 3.4E-17 80.6 11.6 100 44-144 18-117 (158)
20 PF13499 EF-hand_7: EF-hand do 99.5 2.5E-13 5.3E-18 72.2 6.9 62 81-143 1-66 (66)
21 KOG0037 Ca2+-binding protein, 99.5 5.5E-13 1.2E-17 84.1 8.9 122 5-142 94-217 (221)
22 KOG0038 Ca2+-binding kinase in 99.5 5.1E-13 1.1E-17 79.2 7.8 101 44-144 72-176 (189)
23 PTZ00184 calmodulin; Provision 99.4 4.7E-12 1E-16 77.6 11.3 100 44-144 12-111 (149)
24 PF13499 EF-hand_7: EF-hand do 99.4 6.1E-13 1.3E-17 70.7 6.3 64 6-69 1-66 (66)
25 cd05022 S-100A13 S-100A13: S-1 99.4 1E-12 2.2E-17 73.4 7.3 68 2-71 5-75 (89)
26 cd05027 S-100B S-100B: S-100B 99.4 1.3E-12 2.9E-17 73.0 7.4 64 80-144 8-78 (88)
27 cd05027 S-100B S-100B: S-100B 99.4 2.5E-12 5.5E-17 71.8 7.4 66 3-70 6-78 (88)
28 KOG0044 Ca2+ sensor (EF-Hand s 99.4 5.1E-11 1.1E-15 75.2 12.0 121 19-144 6-127 (193)
29 cd05029 S-100A6 S-100A6: S-100 99.3 2E-11 4.3E-16 68.2 7.6 64 80-144 10-78 (88)
30 KOG0040 Ca2+-binding actin-bun 99.3 2.5E-11 5.4E-16 93.8 10.2 134 1-143 2249-2396(2399)
31 cd05026 S-100Z S-100Z: S-100Z 99.3 2.1E-11 4.5E-16 69.0 7.0 65 80-144 10-80 (93)
32 cd05031 S-100A10_like S-100A10 99.3 2.4E-11 5.2E-16 69.0 7.2 65 79-144 7-78 (94)
33 cd00213 S-100 S-100: S-100 dom 99.3 2.2E-11 4.8E-16 68.3 6.8 69 1-71 4-79 (88)
34 smart00027 EH Eps15 homology d 99.3 2.8E-11 6.1E-16 69.0 7.3 66 2-71 7-72 (96)
35 cd05025 S-100A1 S-100A1: S-100 99.3 2.5E-11 5.5E-16 68.6 7.0 66 79-144 8-79 (92)
36 KOG2643 Ca2+ binding protein, 99.3 6.3E-11 1.4E-15 81.8 9.8 135 5-145 318-453 (489)
37 cd05031 S-100A10_like S-100A10 99.3 4.5E-11 9.8E-16 67.8 7.4 66 3-70 6-78 (94)
38 PF13833 EF-hand_8: EF-hand do 99.3 2.7E-11 5.9E-16 61.7 5.7 51 93-144 1-52 (54)
39 KOG0028 Ca2+-binding protein ( 99.2 2.6E-10 5.5E-15 68.8 10.4 99 44-143 34-132 (172)
40 cd05026 S-100Z S-100Z: S-100Z 99.2 7.1E-11 1.5E-15 66.8 7.3 66 3-70 8-80 (93)
41 cd05025 S-100A1 S-100A1: S-100 99.2 7.6E-11 1.6E-15 66.7 7.4 66 3-70 7-79 (92)
42 PLN02964 phosphatidylserine de 99.2 1.7E-10 3.8E-15 84.6 11.0 118 21-144 120-242 (644)
43 cd05029 S-100A6 S-100A6: S-100 99.2 8.2E-11 1.8E-15 65.7 7.2 67 2-70 7-78 (88)
44 cd00052 EH Eps15 homology doma 99.2 6.4E-11 1.4E-15 62.9 6.4 59 8-70 2-60 (67)
45 cd00052 EH Eps15 homology doma 99.2 8E-11 1.7E-15 62.6 6.6 59 83-144 2-60 (67)
46 smart00027 EH Eps15 homology d 99.2 1.1E-10 2.5E-15 66.4 7.3 64 78-144 8-71 (96)
47 cd00051 EFh EF-hand, calcium b 99.2 1.8E-10 3.8E-15 59.9 7.2 62 82-144 2-63 (63)
48 cd00213 S-100 S-100: S-100 dom 99.2 1.7E-10 3.6E-15 64.7 7.0 65 79-144 7-78 (88)
49 KOG2562 Protein phosphatase 2 99.2 4.2E-10 9E-15 78.3 9.9 129 7-141 280-420 (493)
50 cd05023 S-100A11 S-100A11: S-1 99.2 4.1E-10 8.8E-15 63.0 7.5 65 80-144 9-79 (89)
51 KOG0034 Ca2+/calmodulin-depend 99.2 6.7E-10 1.4E-14 70.1 9.4 101 8-109 69-176 (187)
52 cd00051 EFh EF-hand, calcium b 99.1 2.6E-10 5.7E-15 59.2 6.4 61 7-69 2-62 (63)
53 PF13833 EF-hand_8: EF-hand do 99.1 1.8E-10 3.8E-15 58.6 5.5 51 18-70 1-52 (54)
54 cd00252 SPARC_EC SPARC_EC; ext 99.1 5.3E-10 1.1E-14 65.4 7.2 63 77-144 45-107 (116)
55 PF14658 EF-hand_9: EF-hand do 99.1 5E-10 1.1E-14 58.2 5.6 62 84-145 2-64 (66)
56 cd05023 S-100A11 S-100A11: S-1 99.1 1.3E-09 2.9E-14 60.9 7.3 67 2-70 6-79 (89)
57 PF14658 EF-hand_9: EF-hand do 99.1 8.9E-10 1.9E-14 57.3 6.0 61 9-71 2-64 (66)
58 KOG1029 Endocytic adaptor prot 99.0 1.1E-08 2.4E-13 75.4 11.7 133 3-143 14-255 (1118)
59 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.9E-09 6.3E-14 62.3 7.2 58 44-106 49-106 (116)
60 cd05030 calgranulins Calgranul 99.0 2.6E-09 5.6E-14 59.8 6.5 64 80-144 8-78 (88)
61 cd05030 calgranulins Calgranul 99.0 4.3E-09 9.3E-14 58.9 6.3 67 2-70 5-78 (88)
62 KOG2643 Ca2+ binding protein, 98.9 4.7E-08 1E-12 68.0 10.6 131 7-143 235-382 (489)
63 KOG0036 Predicted mitochondria 98.9 4.4E-08 9.6E-13 67.7 10.1 95 44-144 15-109 (463)
64 KOG0041 Predicted Ca2+-binding 98.8 5.1E-08 1.1E-12 61.2 8.9 107 2-110 96-205 (244)
65 PF12763 EF-hand_4: Cytoskelet 98.8 1.6E-08 3.4E-13 58.1 6.3 66 1-71 6-71 (104)
66 KOG4251 Calcium binding protei 98.8 2.9E-08 6.3E-13 64.3 6.3 139 4-142 100-306 (362)
67 KOG0041 Predicted Ca2+-binding 98.8 3.7E-08 8E-13 61.8 6.4 66 78-144 97-162 (244)
68 PF00036 EF-hand_1: EF hand; 98.7 2.7E-08 5.9E-13 43.6 3.5 27 82-108 2-28 (29)
69 PF00036 EF-hand_1: EF hand; 98.7 3.1E-08 6.8E-13 43.4 3.6 29 6-34 1-29 (29)
70 cd05024 S-100A10 S-100A10: A s 98.6 4.7E-07 1E-11 50.4 7.7 64 80-144 8-75 (91)
71 PF13405 EF-hand_6: EF-hand do 98.6 7.9E-08 1.7E-12 42.9 3.6 30 6-35 1-31 (31)
72 KOG0751 Mitochondrial aspartat 98.6 1.6E-06 3.4E-11 61.6 11.3 105 3-110 34-138 (694)
73 KOG4666 Predicted phosphate ac 98.6 8.4E-08 1.8E-12 64.5 4.7 99 44-144 260-358 (412)
74 KOG0030 Myosin essential light 98.6 1.7E-06 3.8E-11 51.4 9.1 100 44-144 12-115 (152)
75 KOG0169 Phosphoinositide-speci 98.5 3.4E-06 7.3E-11 62.6 12.0 135 3-144 134-273 (746)
76 PF13405 EF-hand_6: EF-hand do 98.5 2.5E-07 5.4E-12 41.3 3.6 29 82-110 2-31 (31)
77 cd05024 S-100A10 S-100A10: A s 98.5 2E-06 4.3E-11 47.9 7.7 67 3-70 6-75 (91)
78 PF12763 EF-hand_4: Cytoskelet 98.5 1E-06 2.2E-11 50.6 6.7 62 78-143 8-69 (104)
79 KOG0031 Myosin regulatory ligh 98.5 1.4E-06 3E-11 52.7 6.9 88 17-107 76-164 (171)
80 PF14788 EF-hand_10: EF hand; 98.5 7.3E-07 1.6E-11 43.9 4.8 49 21-71 1-49 (51)
81 KOG0038 Ca2+-binding kinase in 98.4 2.9E-06 6.3E-11 50.9 7.7 100 9-109 75-178 (189)
82 KOG2562 Protein phosphatase 2 98.4 4E-06 8.8E-11 59.0 9.5 130 7-143 227-377 (493)
83 PRK12309 transaldolase/EF-hand 98.4 1.5E-06 3.4E-11 61.1 6.9 57 74-144 328-384 (391)
84 KOG0040 Ca2+-binding actin-bun 98.3 1.2E-05 2.5E-10 63.9 10.1 95 44-139 2254-2355(2399)
85 PF13202 EF-hand_5: EF hand; P 98.3 1.5E-06 3.2E-11 36.7 3.0 23 83-105 2-24 (25)
86 PF14788 EF-hand_10: EF hand; 98.2 4.4E-06 9.5E-11 41.1 4.7 47 97-144 2-48 (51)
87 PF13202 EF-hand_5: EF hand; P 98.2 1.9E-06 4.2E-11 36.3 3.0 24 7-30 1-24 (25)
88 KOG0377 Protein serine/threoni 98.2 6.2E-06 1.3E-10 58.0 7.0 63 6-70 548-614 (631)
89 PRK12309 transaldolase/EF-hand 98.2 1.4E-05 2.9E-10 56.4 7.6 59 35-109 328-386 (391)
90 PF09279 EF-hand_like: Phospho 98.1 7.8E-06 1.7E-10 45.2 4.3 62 82-144 2-68 (83)
91 KOG0046 Ca2+-binding actin-bun 98.1 1.9E-05 4.1E-10 56.6 7.0 69 1-70 15-84 (627)
92 PF10591 SPARC_Ca_bdg: Secrete 98.1 2.4E-06 5.1E-11 50.0 2.2 56 44-102 55-110 (113)
93 KOG0751 Mitochondrial aspartat 98.0 7.7E-05 1.7E-09 53.4 8.5 124 8-140 111-239 (694)
94 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.8E-06 6.1E-11 49.7 1.1 63 77-142 51-113 (113)
95 KOG1707 Predicted Ras related/ 97.9 0.00017 3.6E-09 52.8 9.5 137 4-143 194-375 (625)
96 KOG4065 Uncharacterized conser 97.7 0.00019 4.1E-09 41.5 5.7 64 80-143 67-143 (144)
97 smart00054 EFh EF-hand, calciu 97.5 0.00017 3.6E-09 30.6 3.0 27 7-33 2-28 (29)
98 KOG0046 Ca2+-binding actin-bun 97.5 0.00056 1.2E-08 49.4 6.5 63 80-143 19-83 (627)
99 PLN02952 phosphoinositide phos 97.4 0.0031 6.8E-08 47.0 10.0 88 56-144 13-109 (599)
100 KOG0035 Ca2+-binding actin-bun 97.4 0.0027 5.9E-08 48.9 9.7 102 2-104 744-848 (890)
101 PF05042 Caleosin: Caleosin re 97.4 0.0018 3.9E-08 40.4 7.3 135 5-142 7-163 (174)
102 smart00054 EFh EF-hand, calciu 97.4 0.00042 9E-09 29.2 3.3 25 83-107 3-27 (29)
103 PF09279 EF-hand_like: Phospho 97.3 0.0014 3.1E-08 36.0 5.8 63 7-70 2-68 (83)
104 KOG4666 Predicted phosphate ac 97.3 0.0017 3.7E-08 44.4 6.9 103 5-110 259-361 (412)
105 KOG1955 Ral-GTPase effector RA 97.3 0.0007 1.5E-08 48.7 5.3 66 2-71 228-293 (737)
106 KOG0998 Synaptic vesicle prote 97.2 0.0004 8.6E-09 53.8 3.6 133 3-143 127-343 (847)
107 KOG4251 Calcium binding protei 97.2 0.00033 7.1E-09 46.0 2.4 64 78-141 99-164 (362)
108 KOG1029 Endocytic adaptor prot 97.0 0.0014 3E-08 49.7 4.7 64 4-71 194-257 (1118)
109 KOG1265 Phospholipase C [Lipid 96.9 0.043 9.4E-07 42.7 11.7 121 15-144 158-298 (1189)
110 KOG3555 Ca2+-binding proteogly 96.7 0.0094 2E-07 41.2 6.4 62 77-143 247-308 (434)
111 KOG4065 Uncharacterized conser 96.6 0.0091 2E-07 34.7 5.0 60 9-68 71-142 (144)
112 KOG1955 Ral-GTPase effector RA 96.5 0.0082 1.8E-07 43.5 5.5 62 79-143 230-291 (737)
113 KOG0998 Synaptic vesicle prote 96.4 0.0051 1.1E-07 48.0 4.3 131 5-143 11-188 (847)
114 PF05517 p25-alpha: p25-alpha 96.3 0.033 7.2E-07 34.5 6.8 62 83-144 2-68 (154)
115 KOG0169 Phosphoinositide-speci 96.0 0.1 2.2E-06 39.9 8.8 94 44-143 137-230 (746)
116 PF05517 p25-alpha: p25-alpha 95.8 0.077 1.7E-06 32.9 6.5 62 8-71 2-69 (154)
117 KOG2243 Ca2+ release channel ( 95.6 0.027 5.9E-07 46.0 4.8 58 84-143 4061-4118(5019)
118 PF05042 Caleosin: Caleosin re 95.3 0.13 2.8E-06 32.3 6.3 31 114-144 93-123 (174)
119 KOG4347 GTPase-activating prot 95.2 0.042 9.1E-07 41.2 4.6 59 77-137 552-610 (671)
120 KOG4578 Uncharacterized conser 95.2 0.017 3.7E-07 39.7 2.4 63 81-143 334-396 (421)
121 PF08726 EFhand_Ca_insen: Ca2+ 95.0 0.036 7.8E-07 29.4 2.8 57 78-143 4-67 (69)
122 KOG3555 Ca2+-binding proteogly 94.4 0.12 2.7E-06 36.0 4.9 98 6-110 212-312 (434)
123 KOG4578 Uncharacterized conser 94.4 0.037 8E-07 38.2 2.4 66 44-109 334-399 (421)
124 KOG4347 GTPase-activating prot 94.3 0.081 1.8E-06 39.7 4.2 57 44-102 556-612 (671)
125 PLN02952 phosphoinositide phos 94.2 1.4 3E-05 33.6 10.3 90 18-108 13-110 (599)
126 KOG1707 Predicted Ras related/ 94.2 0.13 2.7E-06 38.5 4.9 85 4-92 314-398 (625)
127 KOG0042 Glycerol-3-phosphate d 94.2 0.12 2.6E-06 38.4 4.7 68 2-71 590-657 (680)
128 KOG0042 Glycerol-3-phosphate d 93.8 0.12 2.6E-06 38.5 4.2 63 81-144 594-656 (680)
129 PF09069 EF-hand_3: EF-hand; 93.8 0.65 1.4E-05 26.0 7.1 62 80-144 3-74 (90)
130 PLN02222 phosphoinositide phos 93.6 0.52 1.1E-05 35.6 7.2 64 79-144 24-89 (581)
131 KOG3866 DNA-binding protein of 93.4 0.67 1.5E-05 32.1 6.8 46 23-70 225-271 (442)
132 PLN02228 Phosphoinositide phos 93.2 0.84 1.8E-05 34.5 7.7 65 78-144 22-91 (567)
133 KOG0035 Ca2+-binding actin-bun 92.8 0.52 1.1E-05 37.2 6.3 65 79-144 746-815 (890)
134 PLN02230 phosphoinositide phos 92.5 1.2 2.5E-05 33.9 7.6 66 78-144 27-101 (598)
135 cd07313 terB_like_2 tellurium 92.2 1 2.2E-05 25.7 5.9 82 18-105 12-97 (104)
136 KOG2243 Ca2+ release channel ( 91.7 0.35 7.6E-06 40.2 4.4 60 9-71 4061-4120(5019)
137 COG4103 Uncharacterized protei 91.2 2.2 4.8E-05 26.0 6.5 102 9-118 34-139 (148)
138 PF14513 DAG_kinase_N: Diacylg 90.7 0.89 1.9E-05 27.7 4.6 72 18-93 4-82 (138)
139 KOG2871 Uncharacterized conser 90.1 0.27 5.9E-06 34.7 2.3 65 5-70 309-373 (449)
140 TIGR01848 PHA_reg_PhaR polyhyd 89.4 1.1 2.3E-05 25.9 4.0 20 89-108 12-31 (107)
141 KOG1264 Phospholipase C [Lipid 89.2 1.1 2.4E-05 35.2 5.0 134 7-143 146-291 (1267)
142 PLN02223 phosphoinositide phos 88.6 3.3 7.2E-05 31.1 7.0 66 78-144 14-91 (537)
143 KOG3866 DNA-binding protein of 88.0 5.2 0.00011 27.9 7.1 92 9-108 248-354 (442)
144 PF14513 DAG_kinase_N: Diacylg 87.8 0.38 8.3E-06 29.2 1.6 48 94-144 5-59 (138)
145 PF09069 EF-hand_3: EF-hand; 87.4 3.6 7.8E-05 23.1 8.4 62 5-71 3-75 (90)
146 PF05099 TerB: Tellurite resis 85.2 1.1 2.3E-05 27.0 2.7 80 18-101 36-117 (140)
147 KOG2871 Uncharacterized conser 83.7 1.4 3E-05 31.4 2.9 61 79-140 308-369 (449)
148 KOG4403 Cell surface glycoprot 82.7 7.5 0.00016 28.4 6.1 101 17-123 40-144 (575)
149 PF08726 EFhand_Ca_insen: Ca2+ 82.2 2.3 4.9E-05 22.6 2.8 27 4-31 5-31 (69)
150 PRK09430 djlA Dna-J like membr 81.7 14 0.00031 25.3 8.2 102 17-125 67-174 (267)
151 KOG0506 Glutaminase (contains 81.7 13 0.00028 27.7 7.1 60 9-70 90-157 (622)
152 PF07879 PHB_acc_N: PHB/PHA ac 81.2 2.8 6E-05 21.8 2.8 38 87-124 10-56 (64)
153 PLN02222 phosphoinositide phos 81.2 13 0.00029 28.5 7.3 65 5-71 25-90 (581)
154 PF07308 DUF1456: Protein of u 80.9 6.5 0.00014 20.8 5.3 40 100-140 17-56 (68)
155 PLN02228 Phosphoinositide phos 79.4 20 0.00043 27.5 7.7 65 5-71 24-92 (567)
156 cd07176 terB tellurite resista 79.2 5.1 0.00011 22.8 3.9 82 18-102 15-99 (111)
157 KOG0039 Ferric reductase, NADH 78.8 7.6 0.00017 30.2 5.6 76 60-142 4-86 (646)
158 PF03672 UPF0154: Uncharacteri 78.4 6.6 0.00014 20.5 3.6 33 18-52 28-60 (64)
159 COG3763 Uncharacterized protei 77.9 8.5 0.00018 20.4 4.2 34 17-52 34-67 (71)
160 PF00404 Dockerin_1: Dockerin 77.9 3.7 8E-05 16.3 2.5 17 15-31 1-17 (21)
161 PRK00523 hypothetical protein; 77.7 6.9 0.00015 20.9 3.6 33 18-52 36-68 (72)
162 KOG4004 Matricellular protein 77.4 1.1 2.3E-05 29.0 0.7 55 86-143 193-248 (259)
163 PF12174 RST: RCD1-SRO-TAF4 (R 77.0 7.9 0.00017 20.6 3.8 58 59-124 8-65 (70)
164 PF08414 NADPH_Ox: Respiratory 76.5 7 0.00015 22.3 3.7 60 44-109 31-93 (100)
165 KOG1265 Phospholipase C [Lipid 76.1 41 0.0009 27.5 9.5 66 44-109 222-300 (1189)
166 cd07313 terB_like_2 tellurium 72.6 4.4 9.5E-05 23.0 2.4 53 57-109 13-66 (104)
167 KOG2301 Voltage-gated Ca2+ cha 72.6 4.1 8.9E-05 34.8 3.0 67 2-71 1414-1484(1592)
168 PF08976 DUF1880: Domain of un 72.6 4.7 0.0001 23.7 2.4 28 44-71 8-35 (118)
169 PRK01844 hypothetical protein; 72.5 11 0.00023 20.2 3.6 33 18-52 35-67 (72)
170 KOG0869 CCAAT-binding factor, 69.1 25 0.00055 21.9 8.1 73 17-110 28-100 (168)
171 PF11116 DUF2624: Protein of u 67.5 19 0.00042 20.0 6.5 42 21-64 14-55 (85)
172 KOG1954 Endocytosis/signaling 66.1 21 0.00045 26.1 4.9 58 7-69 446-503 (532)
173 PF03979 Sigma70_r1_1: Sigma-7 65.1 6.3 0.00014 21.5 1.9 30 94-126 19-48 (82)
174 TIGR01639 P_fal_TIGR01639 Plas 65.0 17 0.00037 18.7 3.4 31 95-126 8-38 (61)
175 PF09336 Vps4_C: Vps4 C termin 64.9 11 0.00025 19.4 2.7 25 96-121 29-53 (62)
176 PF04157 EAP30: EAP30/Vps36 fa 64.9 38 0.00082 22.4 9.5 15 25-39 61-75 (223)
177 cd00086 homeodomain Homeodomai 64.8 16 0.00034 18.0 4.0 40 2-50 10-49 (59)
178 PF01885 PTS_2-RNA: RNA 2'-pho 63.6 15 0.00033 23.6 3.7 37 90-127 26-62 (186)
179 PF01023 S_100: S-100/ICaBP ty 62.5 16 0.00035 17.4 3.2 29 4-32 5-35 (44)
180 PRK00819 RNA 2'-phosphotransfe 61.6 23 0.00049 22.7 4.2 36 91-127 28-63 (179)
181 PF09068 EF-hand_2: EF hand; 59.4 37 0.00079 20.4 8.1 29 81-109 98-126 (127)
182 cd07316 terB_like_DjlA N-termi 59.2 31 0.00066 19.4 6.7 82 18-103 12-96 (106)
183 PF12419 DUF3670: SNF2 Helicas 58.9 25 0.00055 21.4 3.9 50 93-142 80-138 (141)
184 PLN02230 phosphoinositide phos 58.8 85 0.0019 24.5 7.4 66 5-71 29-102 (598)
185 PF11829 DUF3349: Protein of u 58.6 33 0.00071 19.6 5.2 66 60-126 20-85 (96)
186 COG4103 Uncharacterized protei 58.1 11 0.00024 23.1 2.2 28 114-141 63-90 (148)
187 KOG0455 Homoserine dehydrogena 57.0 16 0.00034 25.0 2.9 36 7-42 180-215 (364)
188 PLN02223 phosphoinositide phos 55.9 92 0.002 23.9 7.1 64 5-71 16-92 (537)
189 PTZ00373 60S Acidic ribosomal 55.7 41 0.00088 19.8 4.7 51 11-68 9-59 (112)
190 PF12486 DUF3702: ImpA domain 55.4 26 0.00056 21.8 3.5 30 3-32 67-96 (148)
191 PF00427 PBS_linker_poly: Phyc 52.8 51 0.0011 20.0 5.1 51 57-109 42-99 (131)
192 COG5069 SAC6 Ca2+-binding acti 52.7 1E+02 0.0022 23.4 6.9 79 5-90 485-564 (612)
193 PF08044 DUF1707: Domain of un 50.6 32 0.00068 17.2 2.8 31 93-124 20-50 (53)
194 KOG4301 Beta-dystrobrevin [Cyt 50.4 20 0.00044 25.5 2.8 57 85-143 115-171 (434)
195 PF00046 Homeobox: Homeobox do 50.3 31 0.00068 16.9 4.0 40 2-50 10-49 (57)
196 KOG1954 Endocytosis/signaling 48.7 38 0.00083 24.8 3.9 57 81-141 445-501 (532)
197 cd05833 Ribosomal_P2 Ribosomal 48.3 55 0.0012 19.1 4.7 54 10-70 6-59 (109)
198 COG2818 Tag 3-methyladenine DN 48.2 6.2 0.00013 25.3 0.1 40 78-118 53-92 (188)
199 PF02761 Cbl_N2: CBL proto-onc 48.1 48 0.001 18.4 6.5 65 44-110 8-72 (85)
200 PF09373 PMBR: Pseudomurein-bi 47.9 26 0.00056 15.4 2.1 16 94-109 2-17 (33)
201 PF07499 RuvA_C: RuvA, C-termi 47.4 33 0.00072 16.4 3.5 39 25-69 4-42 (47)
202 PLN00138 large subunit ribosom 45.9 62 0.0013 19.1 4.6 50 11-67 7-56 (113)
203 PF08461 HTH_12: Ribonuclease 45.5 36 0.00078 17.7 2.7 35 94-129 11-45 (66)
204 TIGR03573 WbuX N-acetyl sugar 44.7 73 0.0016 22.7 4.9 43 94-143 300-342 (343)
205 PF07128 DUF1380: Protein of u 43.8 40 0.00087 20.7 3.0 31 97-128 27-57 (139)
206 cd07177 terB_like tellurium re 43.6 57 0.0012 18.0 5.7 82 18-104 12-96 (104)
207 PF10281 Ish1: Putative stress 41.9 37 0.0008 15.4 3.5 30 114-143 4-34 (38)
208 PF04963 Sigma54_CBD: Sigma-54 41.8 74 0.0016 20.6 4.3 52 16-69 45-96 (194)
209 cd04411 Ribosomal_P1_P2_L12p R 41.1 73 0.0016 18.5 5.2 42 22-70 17-58 (105)
210 PF08730 Rad33: Rad33; InterP 40.9 95 0.0021 19.8 9.7 36 4-40 13-48 (170)
211 PF04558 tRNA_synt_1c_R1: Glut 40.3 96 0.0021 19.6 5.8 47 78-126 83-129 (164)
212 PF13623 SurA_N_2: SurA N-term 38.7 95 0.0021 19.1 4.5 37 106-143 99-145 (145)
213 KOG3449 60S acidic ribosomal p 38.0 86 0.0019 18.4 5.4 43 84-127 5-47 (112)
214 KOG4286 Dystrophin-like protei 37.2 1.8E+02 0.0039 23.6 6.1 131 7-142 422-577 (966)
215 PF08671 SinI: Anti-repressor 35.7 43 0.00093 14.6 1.7 10 97-106 17-26 (30)
216 KOG0506 Glutaminase (contains 35.7 1.4E+02 0.003 22.8 5.1 60 83-143 89-156 (622)
217 KOG4301 Beta-dystrobrevin [Cyt 34.7 1.1E+02 0.0025 22.0 4.4 61 47-109 114-174 (434)
218 PF09061 Stirrup: Stirrup; In 34.4 21 0.00045 18.6 0.7 31 19-51 47-77 (79)
219 PF14848 HU-DNA_bdg: DNA-bindi 34.4 97 0.0021 18.4 3.7 30 94-124 26-55 (124)
220 PF10897 DUF2713: Protein of u 33.8 1.4E+02 0.003 19.7 4.4 15 57-71 175-189 (246)
221 PF12872 OST-HTH: OST-HTH/LOTU 33.3 76 0.0016 16.4 6.1 13 19-31 21-33 (74)
222 PF09851 SHOCT: Short C-termin 32.7 51 0.0011 14.2 2.1 16 18-33 13-28 (31)
223 PF12631 GTPase_Cys_C: Catalyt 32.5 83 0.0018 16.6 4.0 46 81-126 24-72 (73)
224 PF04695 Pex14_N: Peroxisomal 32.3 1.2E+02 0.0026 18.4 5.6 48 79-129 3-50 (136)
225 PRK08181 transposase; Validate 32.1 94 0.002 21.4 3.8 48 19-71 4-51 (269)
226 KOG2557 Uncharacterized conser 32.0 2E+02 0.0043 21.1 5.3 52 57-109 72-123 (427)
227 PF07492 Trehalase_Ca-bi: Neut 30.6 9.8 0.00021 16.5 -0.7 15 86-100 5-19 (30)
228 TIGR01209 RNA ligase, Pab1020 29.3 1.7E+02 0.0036 21.4 4.7 99 11-109 163-272 (374)
229 PF04433 SWIRM: SWIRM domain; 29.3 21 0.00046 19.5 0.3 15 56-70 50-64 (86)
230 PF15017 AF1Q: Drug resistance 29.0 33 0.00071 19.2 1.0 16 90-105 69-84 (87)
231 PRK06402 rpl12p 50S ribosomal 28.7 1.3E+02 0.0028 17.6 4.8 41 21-68 16-56 (106)
232 PF06226 DUF1007: Protein of u 28.4 71 0.0015 21.0 2.6 25 10-34 55-79 (212)
233 COG1423 ATP-dependent DNA liga 28.4 1.7E+02 0.0037 21.2 4.5 98 11-108 171-279 (382)
234 TIGR00624 tag DNA-3-methyladen 28.1 17 0.00036 23.4 -0.3 33 78-110 51-83 (179)
235 PF09066 B2-adapt-app_C: Beta2 28.1 52 0.0011 19.0 1.8 18 93-110 3-20 (114)
236 cd00236 FinO_conjug_rep FinO b 28.1 1.6E+02 0.0034 18.4 4.0 62 45-106 64-127 (146)
237 PF10440 WIYLD: Ubiquitin-bind 28.1 78 0.0017 16.6 2.2 28 28-55 15-42 (65)
238 PF03586 Herpes_UL36: Herpesvi 28.0 2E+02 0.0044 19.7 5.2 27 44-71 122-148 (253)
239 PF10437 Lip_prot_lig_C: Bacte 27.9 1.1E+02 0.0024 16.6 3.2 42 99-143 44-86 (86)
240 KOG0039 Ferric reductase, NADH 27.2 2.2E+02 0.0047 22.6 5.3 64 44-108 19-89 (646)
241 PF09412 XendoU: Endoribonucle 27.2 1E+02 0.0022 21.2 3.3 13 96-108 118-130 (265)
242 PF13608 Potyvirid-P3: Protein 27.1 67 0.0015 24.0 2.5 30 3-33 287-316 (445)
243 COG1859 KptA RNA:NAD 2'-phosph 27.0 1.7E+02 0.0037 19.5 4.0 37 91-128 54-90 (211)
244 COG3877 Uncharacterized protei 27.0 1.4E+02 0.003 17.5 3.5 41 101-144 77-121 (122)
245 PF08100 Dimerisation: Dimeris 26.9 49 0.0011 16.3 1.3 23 85-107 11-33 (51)
246 PF08328 ASL_C: Adenylosuccina 26.3 1.4E+02 0.003 17.7 3.2 24 18-41 50-73 (115)
247 smart00513 SAP Putative DNA-bi 26.2 73 0.0016 14.0 4.3 21 21-41 3-23 (35)
248 KOG0113 U1 small nuclear ribon 26.0 1.5E+02 0.0032 21.0 3.8 67 23-91 61-127 (335)
249 PF04282 DUF438: Family of unk 25.7 1.2E+02 0.0026 16.3 5.6 8 60-67 29-36 (71)
250 PF09743 DUF2042: Uncharacteri 25.3 1.9E+02 0.0042 20.0 4.3 14 57-70 68-81 (272)
251 PF11363 DUF3164: Protein of u 25.0 2.1E+02 0.0045 18.8 5.8 20 51-70 127-146 (195)
252 cd07894 Adenylation_RNA_ligase 24.7 1.6E+02 0.0035 21.2 4.0 25 14-38 134-158 (342)
253 PLN02508 magnesium-protoporphy 24.6 2.1E+02 0.0045 20.6 4.3 87 37-130 35-123 (357)
254 PRK10353 3-methyl-adenine DNA 24.6 14 0.00031 23.8 -1.1 33 78-110 52-84 (187)
255 TIGR00135 gatC glutamyl-tRNA(G 24.4 1.4E+02 0.003 16.6 3.5 7 112-118 15-21 (93)
256 PRK05988 formate dehydrogenase 24.3 1.4E+02 0.0031 18.6 3.3 31 18-52 35-65 (156)
257 smart00389 HOX Homeodomain. DN 24.0 1E+02 0.0022 14.8 3.7 39 3-50 11-49 (56)
258 KOG2301 Voltage-gated Ca2+ cha 23.7 1.1E+02 0.0025 27.0 3.5 34 77-110 1414-1447(1592)
259 COG5562 Phage envelope protein 23.4 42 0.00091 20.5 0.8 19 125-143 80-98 (137)
260 PF07862 Nif11: Nitrogen fixat 23.3 1E+02 0.0022 14.7 2.8 21 98-119 28-48 (49)
261 PF02037 SAP: SAP domain; Int 23.2 88 0.0019 13.8 4.0 21 21-41 3-23 (35)
262 PF02885 Glycos_trans_3N: Glyc 22.8 1.3E+02 0.0027 15.5 4.8 28 94-121 29-56 (66)
263 PHA02335 hypothetical protein 22.6 1.7E+02 0.0038 17.1 5.5 48 55-109 20-69 (118)
264 TIGR02613 mob_myst_B mobile my 22.6 2E+02 0.0043 18.5 3.8 20 17-36 127-146 (186)
265 PRK14981 DNA-directed RNA poly 22.2 1.8E+02 0.0039 17.0 3.5 12 21-32 11-22 (112)
266 PF14237 DUF4339: Domain of un 22.2 72 0.0016 14.9 1.4 20 90-109 7-26 (45)
267 PF06957 COPI_C: Coatomer (COP 22.1 2.2E+02 0.0047 21.3 4.3 56 82-139 303-361 (422)
268 COG3820 Uncharacterized protei 22.0 1E+02 0.0022 19.9 2.3 49 58-106 19-69 (230)
269 TIGR01958 nuoE_fam NADH-quinon 22.0 1.3E+02 0.0028 18.5 2.8 41 7-52 18-58 (148)
270 COG5394 Uncharacterized protei 21.9 2.3E+02 0.0049 18.1 4.3 22 88-109 20-41 (193)
271 PF09107 SelB-wing_3: Elongati 21.8 1.2E+02 0.0026 14.9 3.7 9 60-68 11-19 (50)
272 cd08330 CARD_ASC_NALP1 Caspase 21.7 1.5E+02 0.0033 16.1 3.5 48 57-110 27-74 (82)
273 PRK07539 NADH dehydrogenase su 21.5 1.4E+02 0.0029 18.6 2.8 30 18-51 34-63 (154)
274 KOG4286 Dystrophin-like protei 20.7 4.8E+02 0.01 21.4 6.4 95 8-110 473-579 (966)
275 KOG4070 Putative signal transd 20.6 2.4E+02 0.0051 17.8 5.5 68 21-90 33-108 (180)
276 TIGR02787 codY_Gpos GTP-sensin 20.6 2.1E+02 0.0045 19.7 3.6 26 3-29 181-206 (251)
277 cd08324 CARD_NOD1_CARD4 Caspas 20.3 1.8E+02 0.0038 16.3 3.8 48 56-109 26-73 (85)
278 COG5083 SMP2 Uncharacterized p 20.2 89 0.0019 23.5 2.0 37 92-129 381-418 (580)
279 KOG2525 Folylpolyglutamate syn 20.2 2.4E+02 0.0051 21.6 4.1 41 17-60 46-86 (496)
280 TIGR03798 ocin_TIGR03798 bacte 20.0 1.5E+02 0.0032 15.2 3.3 25 97-122 25-49 (64)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=156.99 Aligned_cols=140 Identities=34% Similarity=0.635 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHH
Q 047502 1 MEVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKED 80 (145)
Q Consensus 1 ~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 80 (145)
++++++++.+|..+|++++|.|+..+|..+++.+|..++.+ ++..++..++. +++.|+|.+|+.++..........+
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~--ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEA--EINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHH--HHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 36889999999999999999999999999999999999999 99999999999 8899999999999998777778889
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.+..+|+.||.+++|+|+..+++.+++.+| ..++++++..++..++.+++|.|+|++|...+.
T Consensus 93 el~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 93 ELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 999999999999999999999999999999 999999999999999999999999999998664
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=4e-28 Score=149.37 Aligned_cols=140 Identities=44% Similarity=0.759 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCc---
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPK--- 78 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~--- 78 (145)
++..+++.+|..+|.+++|.|+..++..+++.+|..++.. ++..++..+|.+++|.|++.+|+.++.........
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~--el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEE--ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHH--HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 5678899999999999999999999999999999999998 99999999999999999999999998865443333
Q ss_pred -HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 79 -EDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 -~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...++.+|+.||.+++|+||..+|+.++..+| ...+.+++..+++.+|.+++|.|+|.+|+..+.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 45899999999999999999999999999999 899999999999999999999999999999875
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=1.8e-25 Score=138.71 Aligned_cols=140 Identities=31% Similarity=0.587 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDY 81 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 81 (145)
++++++..+|..+|++++|.|+..+|..+++.+|...+.. .+..++..+|.+++|.|+|.+|+.++............
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~--~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 91 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKE--EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE 91 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHH--HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH
Confidence 5778999999999999999999999999999999877776 89999999999999999999999987754444456678
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
++.+|+.+|.+++|.|+.++|..++...+ ..+++.++..++..++.+++|.|++++|..++.
T Consensus 92 l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 92 ILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 99999999999999999999999999998 889999999999999999999999999998875
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.94 E-value=4.9e-25 Score=135.45 Aligned_cols=140 Identities=39% Similarity=0.696 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDY 81 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 81 (145)
++++.++..|..+|.+++|.|+..+|..++..++..+... .+..++..+|.+++|.|+|++|+.++............
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 85 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE 85 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHH--HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH
Confidence 5678899999999999999999999999999999887766 89999999999999999999999998755444456678
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+..+|+.+|.+++|.|+.++|..++...+ ..++.+++..++..+|.+++|.|+|++|..++.
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 89999999999999999999999999998 888999999999999999999999999998774
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1e-23 Score=125.68 Aligned_cols=141 Identities=30% Similarity=0.505 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDY 81 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 81 (145)
++.+.++..|..||+++.|.|+..+|.-+++++|..+... ++..++..+|.++.|.|+|++|...+........+.+.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~--ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKE--EILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchH--HHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHH
Confidence 4567889999999999999999999999999999999999 99999999999999999999999998876666668899
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhcC
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLSH 145 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 145 (145)
+..+|+.+|-+++|.|+..+|+.+.+.+| ..++++++..++..+|.+++|.|+-++|...+++
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999999999999999 9999999999999999999999999999988764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=5.1e-23 Score=121.94 Aligned_cols=136 Identities=28% Similarity=0.500 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDY 81 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 81 (145)
.++.+++..|..+|.|++|.|..++++..+.++|..++.. ++..++.. .+|.|+|.-|+.++...+....+++.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~--elDaM~~E----a~gPINft~FLTmfGekL~gtdpe~~ 102 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDE--ELDAMMKE----APGPINFTVFLTMFGEKLNGTDPEEV 102 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHH--HHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHHH
Confidence 5899999999999999999999999999999999998888 99999985 46889999999999987777788899
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+..+|+.||.+++|.|..+.++.+|.+.| ...++++++.+++.+-.+..|.|+|..|+..++
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999876
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=3.6e-23 Score=120.60 Aligned_cols=139 Identities=30% Similarity=0.535 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCC--CCCcccHHHHHHHHhhhcCC--CC
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYN--GDGFIDVDEFMDAVHDDSGG--KP 77 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~--~~ 77 (145)
++..+++.+|..||+.++|.|+..+...+|+++|..++.. ++.+.+....++ +-.+++|++|+..+...... .-
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~a--eV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNA--EVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHH--HHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 5778999999999999999999999999999999999999 999999988877 45789999999988764433 33
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+..-.-++.||++++|+|...+++++|.++| ..++++++..++.... |.+|.|+|+.|++.+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 456777889999999999999999999999999 9999999999999885 7899999999998764
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=7.8e-21 Score=119.13 Aligned_cols=137 Identities=28% Similarity=0.467 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCc-ccHHHHHHHHhhhcCCCCcH
Q 047502 2 EVSSQFRQIFKVMDSN-GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGF-IDVDEFMDAVHDDSGGKPKE 79 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~-~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~~ 79 (145)
.|+..+...|.+++++ +.|.|+.+||..+.. +...+ ...+++..++.+++|. |+|++|+..+..........
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np-----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNP-----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCc-----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH
Confidence 5789999999999999 999999999999982 22222 4678999999988888 99999999999766666666
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCC--HHH----HHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCT--LED----CRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+.++-+|+.||.+++|+|+++++.+++..+-....+ ++. ++.++..+|.++||.|+++||.+++.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 799999999999999999999999999998533444 333 56688899999999999999998874
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=2e-19 Score=112.82 Aligned_cols=130 Identities=23% Similarity=0.352 Sum_probs=118.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHH
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCD-KSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLM 83 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 83 (145)
..+...|...|+++.|+|+.+|+..+|...... .+.. .++.|+..+|.+..|+|+++||..++. ..+.++
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~--TcrlmI~mfd~~~~G~i~f~EF~~Lw~-------~i~~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIE--TCRLMISMFDRDNSGTIGFKEFKALWK-------YINQWR 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHH--HHHHHHHHhcCCCCCccCHHHHHHHHH-------HHHHHH
Confidence 367889999999999999999999999865554 4555 899999999999999999999999998 667899
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.+|+.+|.|++|.|+..||++++..+| ..++++-.+.+++.++..+.|.|.+++|+.++.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 999999999999999999999999999 999999999999999987799999999998763
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=4.6e-19 Score=111.26 Aligned_cols=138 Identities=25% Similarity=0.404 Sum_probs=111.8
Q ss_pred HHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHH
Q 047502 5 SQFRQIFKVMDSN-GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLM 83 (145)
Q Consensus 5 ~~~~~~f~~~d~~-~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 83 (145)
+++...|+.|-.+ ++|.++.++|+.+++.+.- ....+..+..++..+|.+++|.|+|.||+.+++.. ......+.+.
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp-~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eekl~ 103 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFP-DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEKLK 103 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCC-CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHHhh
Confidence 4455555555444 7999999999999998875 33333389999999999999999999999999844 4446677888
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHh----CC------CCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINL----GC------DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~----~~------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.+|+.||.+++|+||+.|+..+++.. ++ .....+.+..+|..+|.|.||.||++||.....
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 99999999999999999999998885 21 112345578899999999999999999997653
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.81 E-value=1.9e-18 Score=117.24 Aligned_cols=134 Identities=31% Similarity=0.444 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCD-KSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKED 80 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 80 (145)
+...+++.+|..+|.+++|.++..++.+.+.++..+ +... ....++..+|.+.+|+++|++|...+. ..+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~--~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E~ 82 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYE--AAKMLFSAMDANRDGRVDYSEFKRYLD------NKEL 82 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchH--HHHHHHHhcccCcCCcccHHHHHHHHH------HhHH
Confidence 455678999999999999999999999999999998 4445 899999999999999999999999987 5777
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.+..+|+..|.+.||.|..+|+.+.+++++ ..++++++..+++.+|.++.+.|+++|+..++.
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 899999999999999999999999999999 999999999999999999999999999988764
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.4e-14 Score=94.95 Aligned_cols=140 Identities=22% Similarity=0.265 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhc------CC
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDS------GG 75 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~------~~ 75 (145)
+...++..++..+|.+++|.|+..++..++.......... .+.+-+..+|.+.+|.|+|+++........ ..
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~--~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d 151 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVE--EAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPD 151 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCccceeeHHHhhhhhhhcccCcccccc
Confidence 4567889999999999999999999999987765555555 677888889999999999999999765311 00
Q ss_pred C---C----cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 76 K---P----KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 76 ~---~----~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
. . ....-+..|+..|.+++|.+|++||..++...-+..+.+--+..-+...|.|+||.|+++||+.-+
T Consensus 152 ~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 152 EEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred chhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 0 0 111335679999999999999999999999876567777778889999999999999999998643
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.57 E-value=9e-14 Score=101.43 Aligned_cols=102 Identities=22% Similarity=0.372 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCCcH-HHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLG-CDKSNAT-KEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKE 79 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 79 (145)
.+++++++.|..+|++++|.+ +..+++.+| ..++... ..+..++..+|.+++|.|++.||+.++.. .......
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg~~~se 214 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FGNLVAA 214 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hccCCCH
Confidence 467889999999999999997 889999999 4666551 13899999999999999999999999884 3444667
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHH
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLIN 108 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 108 (145)
+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 215 EEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 215 NKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 78999999999999999999999999998
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-13 Score=83.26 Aligned_cols=100 Identities=30% Similarity=0.520 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCC----CHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKC----TLEDC 119 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~ 119 (145)
++..+|..+|.+++|.|+..++-.+++ .....+....+..++..+|.+++|.|+.++|..++........ +.+++
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr-~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLR-SLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 688999999999999999999999987 5666688899999999999999999999999999998762222 35599
Q ss_pred HHHHhccCCCCCCcccHHHHHHhhc
Q 047502 120 RRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 120 ~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+|+.+|.+++|.|++.+|..+|.
T Consensus 88 ~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 88 KEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHccCCCCcCcHHHHHHHHH
Confidence 9999999999999999999998875
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.7e-13 Score=90.96 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCC----CCcH
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGG----KPKE 79 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~----~~~~ 79 (145)
+.+-.+.|...|.|++|.++.+||..+|+---.+-... -.+..-+.-.|.|++|.|+++||+.-+...... ....
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~-iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKD-IVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHH-HHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 34456789999999999999999999885443332221 145667778899999999999999977643321 1123
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHH
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRS 141 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 141 (145)
..-.+.+...|.+++|+|+.+|+++.+...+ .....+++..++...|.|+||++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~-~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSE-QDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCC-ccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 4456788899999999999999998888877 667788999999999999999999999874
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.49 E-value=1.5e-13 Score=76.69 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=59.2
Q ss_pred HHHHHHHhhhHhc-CCCCcccHHHHHHHHHH-hCCCCCCH-HHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 79 EDYLMDAFLIFDI-NKNGLISAMELRRVLIN-LGCDKCTL-EDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 ~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...+..+|+.||. +++|+|+..+|+.+++. ++ ..+++ ++++.++..+|.|++|.|+|+||..++.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3578899999999 99999999999999999 77 66777 8999999999999999999999998764
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.49 E-value=9.1e-13 Score=90.97 Aligned_cols=137 Identities=21% Similarity=0.274 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCC------
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLIC-LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGK------ 76 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~------ 76 (145)
...+...|+.+|....|.|+..++..++.. +|+.++.. .+.. +....+.+|.|.|.+....+.......
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr--~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWR--LLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHH--Hhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHH
Confidence 346778899999999999999999999976 46666543 2222 334455678899988777655311110
Q ss_pred -----CcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCC---CCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 77 -----PKEDYLMDAFLIFDINKNGLISAMELRRVLINLGC---DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 77 -----~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.....+..+|...|.|.+|.|+.+||+.+++-++. .+++++++.++-+.+|.++||.|++.||+.+++
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 12346788999999999999999999999998752 567899999999999999999999999998763
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=1.2e-12 Score=79.90 Aligned_cols=99 Identities=26% Similarity=0.329 Sum_probs=91.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.++..|..+|++++|.|++.++..+++ .....++...+..++..+|. ++|.|+.++|..++....+...+++++..+|
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 678889999999999999999999998 77888899999999999999 9999999999999999764666799999999
Q ss_pred hccCCCCCCcccHHHHHHhhc
Q 047502 124 KGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+.+|.+++|.|++.++...++
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHhCCCCCceecHHHHHHHHH
Confidence 999999999999999998775
No 19
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=1.6e-12 Score=80.55 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.+..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.++|..++..........+.+..+|
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67888999999999999999999998743 33455678999999999999999999999998876422445677899999
Q ss_pred hccCCCCCCcccHHHHHHhhc
Q 047502 124 KGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+|.+++|.|+..+|..++.
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHH
Confidence 999999999999999998764
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=2.5e-13 Score=72.21 Aligned_cols=62 Identities=39% Similarity=0.629 Sum_probs=53.6
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTL----EDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
.++.+|+.+|.+++|+|+.+||..++...+ ...++ +.+..++..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG-RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT-SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999999999999999999999998 55444 445566999999999999999999875
No 21
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.47 E-value=5.5e-13 Score=84.12 Aligned_cols=122 Identities=16% Similarity=0.278 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHH
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMD 84 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 84 (145)
+.++.+...||.+..|.|.++||..++..+. .++.++..+|.|+.|.|+..|+..++. .+....+.+....
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~--------~Wr~vF~~~D~D~SG~I~~sEL~~Al~-~~Gy~Lspq~~~~ 164 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYIN--------QWRNVFRTYDRDRSGTIDSSELRQALT-QLGYRLSPQFYNL 164 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHH--------HHHHHHHhcccCCCCcccHHHHHHHHH-HcCcCCCHHHHHH
Confidence 3444555556666666666666666554331 455566666666666666666666655 4444455556666
Q ss_pred HhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCC--cccHHHHHHh
Q 047502 85 AFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDG--FVDFEEFRSM 142 (145)
Q Consensus 85 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g--~i~~~ef~~~ 142 (145)
+++.||..++|.|...+|.+.+..+. .+...|+..|.+..| .|+|++|+..
T Consensus 165 lv~kyd~~~~g~i~FD~FI~ccv~L~-------~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 165 LVRKYDRFGGGRIDFDDFIQCCVVLQ-------RLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHhccccCCceeHHHHHHHHHHHH-------HHHHHHHHhccccceeEEEeHHHHHHH
Confidence 66666655566666666666666553 344555555555554 3555566543
No 22
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.46 E-value=5.1e-13 Score=79.16 Aligned_cols=101 Identities=26% Similarity=0.420 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHH----
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDC---- 119 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~---- 119 (145)
.-+++...+..++.|.++|.+|+..++......+..-.+..+|+.||-++++.|...++...+..+-...++++++
T Consensus 72 fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ 151 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELIC 151 (189)
T ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 3457888888899999999999999887777778888899999999999999999999999999986577888885
Q ss_pred HHHHhccCCCCCCcccHHHHHHhhc
Q 047502 120 RRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 120 ~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..++..+|.+++|++++.+|...+.
T Consensus 152 ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 152 EKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHhcCCCCCcccHHHHHHHHH
Confidence 4567788999999999999998764
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.44 E-value=4.7e-12 Score=77.59 Aligned_cols=100 Identities=27% Similarity=0.406 Sum_probs=84.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.+...|..+|.+++|.|++.+|..++.. ....+....+..+|..+|.+++|.|+.++|..++............+..+|
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 5678888999999999999999998863 333455678999999999999999999999999887532344567789999
Q ss_pred hccCCCCCCcccHHHHHHhhc
Q 047502 124 KGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+|.+++|.|+.++|..++.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHH
Confidence 999999999999999987763
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=6.1e-13 Score=70.66 Aligned_cols=64 Identities=34% Similarity=0.644 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCc--HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 047502 6 QFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNA--TKEAEGMLKQMDYNGDGFIDVDEFMDAV 69 (145)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 69 (145)
+++.+|..+|.+++|.|+.++|..++..++...+.. .+.+..++..+|++++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999998766432 2256677999999999999999998764
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1e-12 Score=73.37 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCC-cHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 2 EVSSQFRQIFKVMDS-NGDGKLSSSELGEVLIC-LGCDKSN-ATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~-~~~g~i~~~~~~~~l~~-l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
.-+..+..+|+.||. +++|.|+..+|+.++.. +|...+. . ++..++..+|.|++|.|+|+||+..+..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~--~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVE--GLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHH--HHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 346788999999999 99999999999999999 8876666 6 8999999999999999999999998773
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.42 E-value=1.3e-12 Score=72.96 Aligned_cols=64 Identities=27% Similarity=0.462 Sum_probs=58.7
Q ss_pred HHHHHHhhhHh-cCCCC-cccHHHHHHHHHH-----hCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFD-INKNG-LISAMELRRVLIN-----LGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+..+|+.|| .+|+| .|+.++|+.+++. ++ ...++++++.+++.+|.+++|.|+|++|+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 57889999998 79999 5999999999999 77 778999999999999999999999999998764
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.40 E-value=2.5e-12 Score=71.82 Aligned_cols=66 Identities=30% Similarity=0.432 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 3 VSSQFRQIFKVMD-SNGDG-KLSSSELGEVLIC-----LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 3 ~~~~~~~~f~~~d-~~~~g-~i~~~~~~~~l~~-----l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
-+..+..+|+.+| ++++| .|+..+|+.+++. +|...+.. ++..+++.+|.+++|.|+|.+|+.++.
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~--~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQE--VVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHH--HHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4678999999998 79999 5999999999999 88877777 899999999999999999999999876
No 28
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=5.1e-11 Score=75.23 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=98.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCC-CCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcc
Q 047502 19 DGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYN-GDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLI 97 (145)
Q Consensus 19 ~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~-~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i 97 (145)
...++.+.+..+.+.-. .+.. +++.+.+.+-.+ +.|.++-++|...++..............+|+.+|.+++|.|
T Consensus 6 ~~~~~~~~~e~l~~~t~--f~~~--ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i 81 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQTK--FSKK--EIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTI 81 (193)
T ss_pred cccCCcHHHHHHHHhcC--CCHH--HHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCc
Confidence 44555555555554333 3334 788888887655 479999999999999776666777889999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 98 SAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 98 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+..||...+.... ....++-+.-.|+.+|.+++|.|+++|++.++.
T Consensus 82 ~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 82 DFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred CHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 9999999999987 667777788889999999999999999998764
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=2e-11 Score=68.20 Aligned_cols=64 Identities=20% Similarity=0.430 Sum_probs=56.7
Q ss_pred HHHHHHhhhHhc-CC-CCcccHHHHHHHHHH---hCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFDI-NK-NGLISAMELRRVLIN---LGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+-.+|..||. +| +|+|+.+||+.+++. +| ..++++++..+++.+|.+++|.|+|.+|+.++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 356778999998 67 899999999999974 57 778999999999999999999999999998764
No 30
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.31 E-value=2.5e-11 Score=93.85 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=105.0
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCC-----cHHHHHHHHHhhcCCCCCcccHHHHHHHHhh-hcC
Q 047502 1 MEVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSN-----ATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD-DSG 74 (145)
Q Consensus 1 ~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~ 74 (145)
+++++++..+|..||.+.+|.++..+|..+|+++|+..+. +++.++.++..+||+.+|.|+..+|+.++.. ...
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 4678899999999999999999999999999999998632 2338999999999999999999999998664 444
Q ss_pred CCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH----hccCC----CCCCcccHHHHHHhh
Q 047502 75 GKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI----KGVDK----DGDGFVDFEEFRSML 143 (145)
Q Consensus 75 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~----~~~d~----~~~g~i~~~ef~~~l 143 (145)
...+...+..+|+.+|. +.-+|+.+++.+.+. ++++.-++ ..+++ ...+.++|.+|++.+
T Consensus 2329 NI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt--------reqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2329 NILSSEEIEDAFRALDA-GKPYVTKEELYQNLT--------REQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccchHHHHHHHHHhhc-CCccccHHHHHhcCC--------HHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 55566799999999998 778999988755443 33332222 23333 335679999999865
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.29 E-value=2.1e-11 Score=69.00 Aligned_cols=65 Identities=22% Similarity=0.322 Sum_probs=54.9
Q ss_pred HHHHHHhhhHh-cCCCC-cccHHHHHHHHHHh-C---CCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFD-INKNG-LISAMELRRVLINL-G---CDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+..+|..|| .+++| +|+..||+.++... + ....++.++..++..+|.+++|.|+|+||+.++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 46778899999 78998 59999999999773 1 1345788999999999999999999999998764
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.29 E-value=2.4e-11 Score=68.97 Aligned_cols=65 Identities=25% Similarity=0.434 Sum_probs=56.7
Q ss_pred HHHHHHHhhhHhc-CC-CCcccHHHHHHHHHH-----hCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 79 EDYLMDAFLIFDI-NK-NGLISAMELRRVLIN-----LGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...+..+|..||. ++ +|.|+..+++.+++. ++ ..++++++..++..+|.+++|.|+|++|+.++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3567889999997 87 699999999999986 34 567889999999999999999999999998764
No 33
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.28 E-value=2.2e-11 Score=68.31 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCCC----CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 1 MEVSSQFRQIFKVMDS--NGDGKLSSSELGEVLIC-LGCDK----SNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 1 ~~~~~~~~~~f~~~d~--~~~g~i~~~~~~~~l~~-l~~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+++++.++.+|..+|+ +++|.|+..++..+++. +|... +.. .+..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~--ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPE--AVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHH--HHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3678889999999999 89999999999999986 55443 345 8999999999999999999999998873
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.28 E-value=2.8e-11 Score=68.97 Aligned_cols=66 Identities=29% Similarity=0.472 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+++..++.+|..+|.+++|.|+..++..+++.++. +.. ++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~--~~~--ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL--PQT--LLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC--CHH--HHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 57889999999999999999999999999998764 444 8999999999999999999999998763
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.28 E-value=2.5e-11 Score=68.60 Aligned_cols=66 Identities=26% Similarity=0.462 Sum_probs=56.7
Q ss_pred HHHHHHHhhhHh-cCCCC-cccHHHHHHHHHH-hCC---CCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 79 EDYLMDAFLIFD-INKNG-LISAMELRRVLIN-LGC---DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...+..+|..|| .+++| .|+..+++.+++. ++. ..++++++..++..+|.+++|.|+|.+|+.++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 356889999997 99999 5999999999986 431 246889999999999999999999999998764
No 36
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.27 E-value=6.3e-11 Score=81.77 Aligned_cols=135 Identities=14% Similarity=0.173 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCC-cHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHH
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSN-ATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLM 83 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 83 (145)
+-+..-|..+|+..+|.|+..+|..++-........ ....++++-..+..+ +..|+++||..++.-. .....+.
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl----~~l~dfd 392 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFL----NNLNDFD 392 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHH----hhhhHHH
Confidence 334566889999988999999999998776543333 222667777777766 4569999999998732 3445566
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhcC
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLSH 145 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 145 (145)
.+...|... .+.|+..+|+++.....+..+++..++-+|..+|.|+||.++++||+.+|++
T Consensus 393 ~Al~fy~~A-g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 393 IALRFYHMA-GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 666666544 4999999999999987658899989999999999999999999999998763
No 37
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.26 E-value=4.5e-11 Score=67.84 Aligned_cols=66 Identities=24% Similarity=0.399 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 3 VSSQFRQIFKVMDS-NG-DGKLSSSELGEVLIC-----LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 3 ~~~~~~~~f~~~d~-~~-~g~i~~~~~~~~l~~-----l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
-...+..+|..+|. ++ +|.|+..++..++.. +|..++.. ++..++..+|.+++|.|+|.+|+.++.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~--ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPM--AVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHH--HHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45678899999997 87 699999999999986 46666767 899999999999999999999998876
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.25 E-value=2.7e-11 Score=61.67 Aligned_cols=51 Identities=43% Similarity=0.772 Sum_probs=47.1
Q ss_pred CCCcccHHHHHHHHHHhCCCC-CCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 93 KNGLISAMELRRVLINLGCDK-CTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
++|.|+.++|+.++..+| .. ++++++..++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 379999999999998888 77 9999999999999999999999999999875
No 39
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.6e-10 Score=68.85 Aligned_cols=99 Identities=22% Similarity=0.315 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.++..+..+++++.|.|++.++..++. .....+..+.+..+..-+|+++.|.|+.++|+.++...-...-+.+++...|
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 788899999999999999999976665 5566677888999999999999999999999999776422444899999999
Q ss_pred hccCCCCCCcccHHHHHHhh
Q 047502 124 KGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l 143 (145)
+.+|.+.+|.||..+|..+.
T Consensus 113 rl~D~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVA 132 (172)
T ss_pred HcccccCCCCcCHHHHHHHH
Confidence 99999999999999998765
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=7.1e-11 Score=66.79 Aligned_cols=66 Identities=30% Similarity=0.431 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 3 VSSQFRQIFKVMD-SNGDG-KLSSSELGEVLIC-LG----CDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 3 ~~~~~~~~f~~~d-~~~~g-~i~~~~~~~~l~~-l~----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
-+..+..+|+.+| .+++| .|+..||+.++.. ++ ...+.. ++..++..+|.+++|.|+|+||+.++.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~--~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPM--LVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHH--HHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 4567888999999 67998 5999999999976 32 233444 899999999999999999999999887
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=7.6e-11 Score=66.66 Aligned_cols=66 Identities=32% Similarity=0.515 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hCC----CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 3 VSSQFRQIFKVMD-SNGDG-KLSSSELGEVLIC-LGC----DKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 3 ~~~~~~~~f~~~d-~~~~g-~i~~~~~~~~l~~-l~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
-+..+.++|..+| .+++| .|+..++..+++. +|. .++.. ++..++..+|.+++|.|+|.+|+.++.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~--~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDAD--AVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3567899999997 99999 5999999999986 553 34555 899999999999999999999999877
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=99.23 E-value=1.7e-10 Score=84.60 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=87.5
Q ss_pred cccHHHHHHHHHH-hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcC-CCCcHH---HHHHHhhhHhcCCCC
Q 047502 21 KLSSSELGEVLIC-LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSG-GKPKED---YLMDAFLIFDINKNG 95 (145)
Q Consensus 21 ~i~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~-~~~~~~---~~~~~f~~~d~~~~g 95 (145)
.++..++...... +..-...+.+++...|..+|++++|.+ ...... ... ..+... .++.+|..+|.+++|
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilr----slG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFV----SCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHH----HhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 3566666554432 011111122278888999999999986 333322 222 233333 389999999999999
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 96 LISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 96 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.|+.+||..++..++ ...+++++..+|+.+|.+++|.|+++||..++.
T Consensus 195 ~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 195 QLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred eEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 999999999999988 777899999999999999999999999998775
No 43
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.23 E-value=8.2e-11 Score=65.74 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 2 EVSSQFRQIFKVMDS-NG-DGKLSSSELGEVLIC---LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~-~~-~g~i~~~~~~~~l~~---l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
+.+..+-.+|+.++. ++ +|.|+.++|+.++.. +|...+.. ++..+++.+|.+++|.|+|++|+..+.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~--ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDA--EIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 456678889999998 56 899999999999963 67777777 999999999999999999999998876
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=6.4e-11 Score=62.92 Aligned_cols=59 Identities=32% Similarity=0.463 Sum_probs=53.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 8 RQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
+.+|..+|++++|.|+..++..++..+|. +.. .+..++..++.+++|.|+|.+|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~--~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRS--VLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHH--HHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 57899999999999999999999999875 444 799999999999999999999999876
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=8e-11 Score=62.55 Aligned_cols=59 Identities=31% Similarity=0.319 Sum_probs=52.7
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+.+|..+|.+++|.|+.+++..++...+ .+.+++..++..++.+++|.|++.+|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4689999999999999999999999876 3788899999999999999999999988763
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=1.1e-10 Score=66.45 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=55.8
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
....+..+|..+|.+++|.|+.+++..+++..+ ++.+++..++..++.+.+|.|++++|+.++.
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 345688899999999999999999999998865 6788899999999999999999999998764
No 47
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.20 E-value=1.8e-10 Score=59.90 Aligned_cols=62 Identities=47% Similarity=0.756 Sum_probs=56.1
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+..+|..+|.+++|.|+..++..++...+ ...+.+.+..++..++.+++|.|++++|..++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 46789999999999999999999999988 888899999999999999999999999988763
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.18 E-value=1.7e-10 Score=64.72 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=56.2
Q ss_pred HHHHHHHhhhHhc--CCCCcccHHHHHHHHHH-hCCCC----CCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 79 EDYLMDAFLIFDI--NKNGLISAMELRRVLIN-LGCDK----CTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 ~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...+..+|..+|. +++|.|+..+|..+++. .+ .. .+..++..++..++.+++|.|+|++|+.++.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 4568889999999 89999999999999986 44 33 3588999999999999999999999998764
No 49
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.17 E-value=4.2e-10 Score=78.33 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=101.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHH----hhcCCCCCcccHHHHHHHHhhhcCCCCcHHHH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLK----QMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYL 82 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 82 (145)
+...|..+|++++|.|+.+++...-... .+.. .+.++|. ..-...+|+++|++|+.++. ........+-+
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~--ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil-A~e~k~t~~Sl 353 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGDHT---LTER--IVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL-AEEDKDTPASL 353 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhccc---hhhH--HHHHHHhhccccceeeecCcccHHHHHHHHH-HhccCCCccch
Confidence 3445889999999999999998875432 2334 7888988 33344689999999999987 44555566789
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHHHh-------CC-CCCCHHHHHHHHhccCCCCCCcccHHHHHH
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLINL-------GC-DKCTLEDCRRMIKGVDKDGDGFVDFEEFRS 141 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 141 (145)
+.+|+.+|.+++|.|+..+++.+.... +- ...-+..+.++++.+.+...+.|++.+|..
T Consensus 354 eYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 354 EYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred hhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999999999999887663 21 233466678899999888899999999975
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.15 E-value=4.1e-10 Score=63.04 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=54.9
Q ss_pred HHHHHHhhh-HhcCCCC-cccHHHHHHHHHHhC----CCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLI-FDINKNG-LISAMELRRVLINLG----CDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+..+|+. +|.+++| .|+.+||+.++.... ....++.++..+++.+|.|++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 467788988 6677876 999999999999862 1355788999999999999999999999998764
No 51
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.15 E-value=6.7e-10 Score=70.12 Aligned_cols=101 Identities=24% Similarity=0.352 Sum_probs=82.3
Q ss_pred HHHHHhhcCCCCCc-ccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCC------cHH
Q 047502 8 RQIFKVMDSNGDGK-LSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKP------KED 80 (145)
Q Consensus 8 ~~~f~~~d~~~~g~-i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~------~~~ 80 (145)
.+++..++++++|. |++.+|...+..+....... .-++-.++.||.+++|.|+.+++...+........ ...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~-~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR-EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH-HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 57889999998888 99999999998765554433 25777899999999999999999999886444222 235
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
.+...|..+|.+++|.|+.+||..++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 67788999999999999999999998864
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.15 E-value=2.6e-10 Score=59.23 Aligned_cols=61 Identities=38% Similarity=0.737 Sum_probs=54.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAV 69 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 69 (145)
+..+|..+|.+++|.|+..++..++..++.+.+.. .+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEE--EIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH--HHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999998888777 88999999999999999999998764
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.15 E-value=1.8e-10 Score=58.65 Aligned_cols=51 Identities=33% Similarity=0.670 Sum_probs=46.7
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 18 GDGKLSSSELGEVLICLGCD-KSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
.+|.|+.++|..++..+|.. .+.. ++..++..+|.+++|.|+|.||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~--e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEE--EVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHH--HHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHH--HHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47899999999999888998 8888 899999999999999999999999876
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.11 E-value=5.3e-10 Score=65.43 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=54.4
Q ss_pred CcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 77 PKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 77 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.....+..+|..+|.+++|.|+.+|+..+. +. ..+..+..++..+|.|++|.||++||..++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 345678999999999999999999999876 22 3467788999999999999999999998874
No 55
>PF14658 EF-hand_9: EF-hand domain
Probab=99.09 E-value=5e-10 Score=58.18 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=56.9
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCC-CcccHHHHHHhhcC
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGD-GFVDFEEFRSMLSH 145 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 145 (145)
.+|..+|.++.|.|...++..+|+.++...+++.+++.+.+.+|+++. |.|+++.|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 479999999999999999999999999448999999999999999987 99999999998863
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.07 E-value=1.3e-09 Score=60.95 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHhC-----CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 2 EVSSQFRQIFKV-MDSNGDG-KLSSSELGEVLICLG-----CDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 2 ~~~~~~~~~f~~-~d~~~~g-~i~~~~~~~~l~~l~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
..+..+..+|+. .|.+++| .|+.+||..++.... ...... ++..++..+|.+++|.|+|+||+.++.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~--~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPG--VLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHH--HHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 356788999999 6677765 999999999997752 233334 899999999999999999999999876
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=99.07 E-value=8.9e-10 Score=57.25 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=56.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHhhcCCCC-CcccHHHHHHHHhh
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLICLGC-DKSNATKEAEGMLKQMDYNGD-GFIDVDEFMDAVHD 71 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~~ 71 (145)
..|..+|+++.|.|...++..+|++++. .+.+. +++.+...+|+++. |.|+++.|...+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~--~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEES--ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHH--HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999999 67777 99999999999988 99999999998864
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.1e-08 Score=75.37 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh-----------
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD----------- 71 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----------- 71 (145)
+.....+.|..+ .-+.|+|+..+-+.++-..|++.. .+-+||.+.|.|+||+++..||..++.+
T Consensus 14 Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~----VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP 88 (1118)
T KOG1029|consen 14 ERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTP----VLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLP 88 (1118)
T ss_pred HHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChH----HHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCC
Confidence 444556667776 447999999999999998888876 7899999999999999999999998876
Q ss_pred --------------------------------------------------------------------------------
Q 047502 72 -------------------------------------------------------------------------------- 71 (145)
Q Consensus 72 -------------------------------------------------------------------------------- 71 (145)
T Consensus 89 ~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ 168 (1118)
T KOG1029|consen 89 PVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHD 168 (1118)
T ss_pred CCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ------------------hcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCc
Q 047502 72 ------------------DSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGF 133 (145)
Q Consensus 72 ------------------~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~ 133 (145)
+.-.....-.....|..+|+...|++|..+-+.+|...+ +....+..++...|.|+||+
T Consensus 169 ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGk 245 (1118)
T KOG1029|consen 169 SSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGK 245 (1118)
T ss_pred cchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCc
Confidence 000011122567899999999999999999999998865 67778999999999999999
Q ss_pred ccHHHHHHhh
Q 047502 134 VDFEEFRSML 143 (145)
Q Consensus 134 i~~~ef~~~l 143 (145)
++.+||.-.+
T Consensus 246 L~~dEfilam 255 (1118)
T KOG1029|consen 246 LSADEFILAM 255 (1118)
T ss_pred ccHHHHHHHH
Confidence 9999998654
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.00 E-value=2.9e-09 Score=62.31 Aligned_cols=58 Identities=28% Similarity=0.286 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVL 106 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 106 (145)
.+.-.|..+|.|++|.|+..|+..+. ..+....+...|..+|.+++|.||.+||...+
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45555555666666666666655544 11334455556666666666666666666555
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.99 E-value=2.6e-09 Score=59.80 Aligned_cols=64 Identities=16% Similarity=0.390 Sum_probs=54.1
Q ss_pred HHHHHHhhhHhcC--CCCcccHHHHHHHHHH-hCCCCCC----HHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFDIN--KNGLISAMELRRVLIN-LGCDKCT----LEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d~~--~~g~i~~~e~~~~l~~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+...|..|+.. .+|.|+.++|+.++.. ++ ..++ +.++..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4567788889865 4799999999999974 44 5555 89999999999999999999999998764
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.95 E-value=4.3e-09 Score=58.90 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----CcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 2 EVSSQFRQIFKVMDSN--GDGKLSSSELGEVLI-CLGCDKS----NATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~--~~g~i~~~~~~~~l~-~l~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
.-+..+-.+|+.++.. .+|.|+..+|+.++. .++...+ .. ++..++..+|.+++|.|+|++|+.++.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~--~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQK--AIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHH--HHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3466788899999866 478999999999996 4554444 45 899999999999999999999999876
No 62
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.88 E-value=4.7e-08 Score=67.98 Aligned_cols=131 Identities=24% Similarity=0.420 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh------CC------CCCCcHH-HHH--HHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICL------GC------DKSNATK-EAE--GMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l------~~------~~~~~~~-~~~--~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+.-.|+.||.|+||.|+.+||..+...+ |. ....... .+. .....+.+++++++++++|+.++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 4457899999999999999999987433 11 1111100 111 2344578999999999999999874
Q ss_pred hcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 72 DSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCT--LEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 72 ~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
...+.++.-|..+|+..+|.|+..+|..++-.....+.. ...++.+-+.+... +-.|+++||..+.
T Consensus 315 -----Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 315 -----LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred -----HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 245677888999999999999999999999887522221 22356666777654 5569999998764
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.87 E-value=4.4e-08 Score=67.68 Aligned_cols=95 Identities=24% Similarity=0.373 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.+..+|..+|.+++|.++..+....+.......+.....+.+|+..|.+.+|.++.++|+..+... +.++..+|
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~F 88 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRIF 88 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHHH
Confidence 688999999999999999999998887655555777889999999999999999999999999975 46788999
Q ss_pred hccCCCCCCcccHHHHHHhhc
Q 047502 124 KGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+|.++||.|+..|.-..++
T Consensus 89 ~~iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 89 QSIDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred hhhccccCCccCHHHHHHHHH
Confidence 999999999999999877664
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.85 E-value=5.1e-08 Score=61.23 Aligned_cols=107 Identities=22% Similarity=0.335 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcH-H
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKE-D 80 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~-~ 80 (145)
.+++.+...|..+|.+.||+|+..+++.++..||-+-+-- -++.++..+|-|.+|+|+|.+|+-.+.......... .
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL--~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds 173 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHL--GLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDS 173 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhH--HHHHHHHHhhcccccchhHHHHHHHHHHHhccccccch
Confidence 3678899999999999999999999999999999998877 789999999999999999999999887644333222 1
Q ss_pred HHHHH--hhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 81 YLMDA--FLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 81 ~~~~~--f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
.+..+ .+..|-..-|......|..+=....
T Consensus 174 ~~~~LAr~~eVDVskeGV~GAknFFeAKI~~q 205 (244)
T KOG0041|consen 174 GLLRLARLSEVDVSKEGVSGAKNFFEAKIEAQ 205 (244)
T ss_pred HHHHHHHhcccchhhhhhhhHHHHHHHHHHhh
Confidence 22222 2336777778888877777654443
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.85 E-value=1.6e-08 Score=58.07 Aligned_cols=66 Identities=29% Similarity=0.461 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 1 MEVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 1 ~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+++...+.++|..++. ++|.|+..+...++...+++.. .+..||...|.+++|.++++||+.++..
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~----~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRD----VLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHH----HHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHH----HHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4688899999999985 6899999999999998888764 8999999999999999999999998774
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=64.34 Aligned_cols=139 Identities=19% Similarity=0.262 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhc---------
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLICL-GCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDS--------- 73 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~--------- 73 (145)
.+.+..+|.+.|.|.+|.|+..++++.+..- .-......++-+..|+..|++++|.|+|.+|..-+....
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 4678889999999999999999999887532 111111111556778889999999999999987655300
Q ss_pred ---------------------------CCCC-----------------------cHHHHHHHhhhHhcCCCCcccHHHHH
Q 047502 74 ---------------------------GGKP-----------------------KEDYLMDAFLIFDINKNGLISAMELR 103 (145)
Q Consensus 74 ---------------------------~~~~-----------------------~~~~~~~~f~~~d~~~~g~i~~~e~~ 103 (145)
...+ -...++.+...+|++++..++..+|.
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 0000 01134566677888888888888887
Q ss_pred HHHHHh----CCCCCC----HHHHHHHHhccCCCCCCcccHHHHHHh
Q 047502 104 RVLINL----GCDKCT----LEDCRRMIKGVDKDGDGFVDFEEFRSM 142 (145)
Q Consensus 104 ~~l~~~----~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~ 142 (145)
...-.. .+..+. ....+.+-..+|.+.+|.++.+|+..+
T Consensus 260 slpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y 306 (362)
T KOG4251|consen 260 SLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDY 306 (362)
T ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhh
Confidence 654321 113333 233444555667788888888877665
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.76 E-value=3.7e-08 Score=61.84 Aligned_cols=66 Identities=33% Similarity=0.498 Sum_probs=59.2
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
....+..+|+.||.+.||+|+..|++.++..+| .+.|---++.+++..|.|.+|+|++-+|+-++.
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 345778899999999999999999999999999 777777789999999999999999999987653
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.72 E-value=2.7e-08 Score=43.63 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=17.8
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHH
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLIN 108 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 108 (145)
++.+|+.+|.+++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456666666666677776666666654
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.71 E-value=3.1e-08 Score=43.44 Aligned_cols=29 Identities=31% Similarity=0.657 Sum_probs=21.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 047502 6 QFRQIFKVMDSNGDGKLSSSELGEVLICL 34 (145)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~l 34 (145)
+++.+|+.+|+|++|.|+.+||..+++.|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 35677888888888888888888877653
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.63 E-value=4.7e-07 Score=50.43 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=51.8
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHhC----CCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINLG----CDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+-.+|..|. ...+.++..||+.++..-- .....++.++.++...|.|+||.|++.||..++.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35667888887 4457999999999997731 1345788899999999999999999999998763
No 71
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.62 E-value=7.9e-08 Score=42.95 Aligned_cols=30 Identities=40% Similarity=0.742 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q 047502 6 QFRQIFKVMDSNGDGKLSSSELGEVLI-CLG 35 (145)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~-~l~ 35 (145)
+++.+|..+|.+++|.|+.+||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 72
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.60 E-value=1.6e-06 Score=61.62 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHH
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYL 82 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 82 (145)
+++.+.-.|...+.++...++.++|.+..-.+-......++.++.+-...|..++|-|+|+||..+-.. ...+....
T Consensus 34 eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~---lC~pDal~ 110 (694)
T KOG0751|consen 34 ELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESV---LCAPDALF 110 (694)
T ss_pred HHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhh---ccCchHHH
Confidence 334444445555677888999999988766554443333325555556677888999999999987442 22346677
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
..+|..||..++|.+|.+++.+++....
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccc
Confidence 8899999999999999999999998864
No 73
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.59 E-value=8.4e-08 Score=64.47 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=85.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.+..+|..+|.+.+|.++|.+.+..++-..........++.+|+.|+.+.||.++-.+|.-+++... ++.+-.+..+|
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~~lf 337 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceeeccccc
Confidence 4788999999999999999999998887777777788999999999999999999999999999863 34444566789
Q ss_pred hccCCCCCCcccHHHHHHhhc
Q 047502 124 KGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...+-..+|+|++.+|.++..
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hhhhcccCcceeHHHHHHHHH
Confidence 999888899999999998753
No 74
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.57 E-value=1.7e-06 Score=51.37 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcC--CCCcccHHHHHHHHHHhCC--CCCCHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDIN--KNGLISAMELRRVLINLGC--DKCTLEDC 119 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~~~~~--~~~~~~~~ 119 (145)
+++.+|..+|..++|+|++.+--.+++ .+...|....+......++++ +-..|+.++|..++..+++ ...+-+++
T Consensus 12 e~ke~F~lfD~~gD~ki~~~q~gdvlR-alG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edf 90 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISGSQVGDVLR-ALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDF 90 (152)
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHH-HhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHH
Confidence 889999999999999999999887776 666667778888888887766 5578999999999888752 45677788
Q ss_pred HHHHhccCCCCCCcccHHHHHHhhc
Q 047502 120 RRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 120 ~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
-.-++.+|+.++|.|...++...|.
T Consensus 91 vegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 91 VEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHHHHhhcccCCcceeHHHHHHHHH
Confidence 8889999999999999999987764
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.54 E-value=3.4e-06 Score=62.64 Aligned_cols=135 Identities=21% Similarity=0.350 Sum_probs=111.2
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHH
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYL 82 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 82 (145)
...-+..+|...|.+.+|.++..+...++..++...... .+..+++..+....+++...+|..+..... ..+ .+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~--~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~-~rp---ev 207 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSES--KARRLFKESDNSQTGKLEEEEFVKFRKELT-KRP---EV 207 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHH--HHHHHHHHHHhhccceehHHHHHHHHHhhc-cCc---hH
Confidence 345678899999999999999999999999999998888 899999999888899999999999876322 222 67
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHHHhCC-CCCCHHHHHHHHhccCCC----CCCcccHHHHHHhhc
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLINLGC-DKCTLEDCRRMIKGVDKD----GDGFVDFEEFRSMLS 144 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~ 144 (145)
...|..+..+ .+.++..++..++...++ ...+.+.+..+++.+... ..+.++++.|.++|.
T Consensus 208 ~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 208 YFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhc
Confidence 7778777544 899999999999999863 567888888888877543 456799999999874
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.51 E-value=2.5e-07 Score=41.31 Aligned_cols=29 Identities=45% Similarity=0.740 Sum_probs=24.2
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHH-HhC
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLI-NLG 110 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 110 (145)
++.+|+.+|.+++|+|+.+||..+++ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 67889999999999999999999998 454
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.49 E-value=2e-06 Score=47.93 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hC--CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLIC-LG--CDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~-l~--~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
-+..+-.+|+.+.. +.+.++..||+.++.. +. +.....+..+..++...|.|++|.|+|.||+.++.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45667789999974 4668999999999844 32 12222233899999999999999999999999987
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.49 E-value=1e-06 Score=50.61 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=51.7
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
.......+|..++. ++|.|+.++.+.++...+ ++.+.+..++...|.+.+|.++.+||+-+|
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 44667888888875 579999999999999865 778899999999999999999999998655
No 79
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.46 E-value=1.4e-06 Score=52.66 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCCcccHHHHHHHHHH-hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCC
Q 047502 17 NGDGKLSSSELGEVLIC-LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNG 95 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g 95 (145)
...|.|++.-|.+++.. |....+.. .+...|..+|.++.|.|.-..+..++. .....-..+.+..+|+.+-.+..|
T Consensus 76 Ea~gPINft~FLTmfGekL~gtdpe~--~I~~AF~~FD~~~~G~I~~d~lre~Lt-t~gDr~~~eEV~~m~r~~p~d~~G 152 (171)
T KOG0031|consen 76 EAPGPINFTVFLTMFGEKLNGTDPEE--VILNAFKTFDDEGSGKIDEDYLRELLT-TMGDRFTDEEVDEMYREAPIDKKG 152 (171)
T ss_pred hCCCCeeHHHHHHHHHHHhcCCCHHH--HHHHHHHhcCccCCCccCHHHHHHHHH-HhcccCCHHHHHHHHHhCCcccCC
Confidence 45778888888887743 33333334 678888888888888888887777776 566667778888888888888888
Q ss_pred cccHHHHHHHHH
Q 047502 96 LISAMELRRVLI 107 (145)
Q Consensus 96 ~i~~~e~~~~l~ 107 (145)
.+++..|..++.
T Consensus 153 ~~dy~~~~~~it 164 (171)
T KOG0031|consen 153 NFDYKAFTYIIT 164 (171)
T ss_pred ceeHHHHHHHHH
Confidence 888888888887
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.46 E-value=7.3e-07 Score=43.87 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 21 KLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 21 ~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+++..|++.+|+.+++..... ++..+|+.+|.+++|++..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~--yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDE--YARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HH--HHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHH--HHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 478899999999999999988 9999999999999999999999988763
No 81
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.43 E-value=2.9e-06 Score=50.89 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=77.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHH----HHH
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDY----LMD 84 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~----~~~ 84 (145)
++-..+..++.|.++..+|..++.-+.-..+.. ..+.-.++.+|-++++.|.-.+....+....+...+.+. +..
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrd-lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRD-LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHH-hhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 455677889999999999999886654433222 145556778999999999999999988876666655544 455
Q ss_pred HhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 85 AFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 85 ~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
+....|.+|+|.|+..+|..++...
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6667899999999999999998764
No 82
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.42 E-value=4e-06 Score=59.02 Aligned_cols=130 Identities=20% Similarity=0.294 Sum_probs=97.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH-----HHhCCC---------CCCcHHHHHHH---HHhhcCCCCCcccHHHHHHHH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVL-----ICLGCD---------KSNATKEAEGM---LKQMDYNGDGFIDVDEFMDAV 69 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l-----~~l~~~---------~~~~~~~~~~~---~~~~d~~~~~~i~~~ef~~~~ 69 (145)
+.++|-.+++.++|.|+..++..-. ..+.-. .+-. ....+ +..+|.+++|.++.++.....
T Consensus 227 i~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e--~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 227 IQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYE--HFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred hhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHH--HHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 5688989999999999988776532 211110 1111 22333 677899999999999988876
Q ss_pred hhhcCCCCcHHHHHHHhh----hHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 70 HDDSGGKPKEDYLMDAFL----IFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 70 ~~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
... .....+.++|. .+-...+|.++.++|..++-.+. ..-+++-+..+|+-+|.+++|.|+..|...+.
T Consensus 305 d~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 305 DHT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred ccc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 532 23557788888 33445789999999999999987 67788889999999999999999999887653
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.39 E-value=1.5e-06 Score=61.06 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 74 GGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 74 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
........+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...++
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3445567889999999999999999999842 46789999999999999999998765
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.29 E-value=1.2e-05 Score=63.93 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCC------cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCC-CCCCH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKP------KEDYLMDAFLIFDINKNGLISAMELRRVLINLGC-DKCTL 116 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~------~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~ 116 (145)
++.-+|..||.+.+|.+++++|..++...-...| +...++.+....|++.+|+|+..+...+|..-.. ...+.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~ 2333 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSS 2333 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccch
Confidence 5778999999999999999999999885433332 3457899999999999999999999998877432 45677
Q ss_pred HHHHHHHhccCCCCCCcccHHHH
Q 047502 117 EDCRRMIKGVDKDGDGFVDFEEF 139 (145)
Q Consensus 117 ~~~~~~~~~~d~~~~g~i~~~ef 139 (145)
+++...|+.++. +...|+.++.
T Consensus 2334 ~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2334 EEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred HHHHHHHHHhhc-CCccccHHHH
Confidence 899999999987 5556666655
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=1.5e-06 Score=36.68 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=14.2
Q ss_pred HHHhhhHhcCCCCcccHHHHHHH
Q 047502 83 MDAFLIFDINKNGLISAMELRRV 105 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~ 105 (145)
+.+|+.+|.+++|.|+.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666554
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.25 E-value=4.4e-06 Score=41.14 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 97 ISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 97 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
++..|++.+++.++ ..+++..+..+|..+|.+++|.+.-+||..+++
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 56677777777777 777777777788877777777777777776653
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.24 E-value=1.9e-06 Score=36.33 Aligned_cols=24 Identities=33% Similarity=0.724 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEV 30 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~ 30 (145)
++..|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456778888888888888887764
No 88
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.24 E-value=6.2e-06 Score=58.00 Aligned_cols=63 Identities=30% Similarity=0.540 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCC----CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 6 QFRQIFKVMDSNGDGKLSSSELGEVLICLGC----DKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
.+..+|+.+|.+++|.|+..||..++..++. +.+.. ++.++.+.+|.|++|.|++.||+.++.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~--~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDD--EILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHH--HHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 4556677777777777777777776665543 22333 666666777777777777777776655
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.17 E-value=1.4e-05 Score=56.43 Aligned_cols=59 Identities=29% Similarity=0.485 Sum_probs=50.3
Q ss_pred CCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 35 GCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
|...... .+..+|..+|.+++|.|+..||+. +..+|..+|.+++|.|+.+||...+...
T Consensus 328 ~~~~~~~--~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTH--AAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhH--HHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3344445 889999999999999999999952 4678999999999999999999998865
No 90
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.09 E-value=7.8e-06 Score=45.17 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=51.4
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHhccCCC----CCCcccHHHHHHhhc
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCD-KCTLEDCRRMIKGVDKD----GDGFVDFEEFRSMLS 144 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~ 144 (145)
+..+|..+.. +.+.||.++|..+|...++. ..+.+.+..++..+..+ ..+.+++++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 6778999965 78999999999999988754 56899999999988654 478999999999875
No 91
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.08 E-value=1.9e-05 Score=56.61 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCc-HHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 1 MEVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNA-TKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 1 ~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
++|+.+++..|...| +++|+|+..++..++...+.+.... .++++.++...+++.+|+|+|++|+..+.
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 368899999999999 8999999999999999988876432 33899999999999999999999999655
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.08 E-value=2.4e-06 Score=49.98 Aligned_cols=56 Identities=30% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMEL 102 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~ 102 (145)
.+.=.|..+|.|++|.|+..|+..+.... .+.+..++..++..|.+++|.||..|.
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 34444555555555555555554443322 233334455555555555555555554
No 93
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.98 E-value=7.7e-05 Score=53.40 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=70.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCC----CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHH
Q 047502 8 RQIFKVMDSNGDGKLSSSELGEVLICLGCDK----SNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLM 83 (145)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 83 (145)
..+|..||+.++|.++.+++..++....+.. ....+.++..| .......++|.+|.+++.. -..+...
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~-----~~~E~~~ 182 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHE-----FQLEHAE 182 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHH-----HHHHHHH
Confidence 3456666666666666666666665543321 11111222222 2222233556666665542 1234467
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccC-CCCCCcccHHHHH
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVD-KDGDGFVDFEEFR 140 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d-~~~~g~i~~~ef~ 140 (145)
++|+..|+.++|.||.=+|++.+.+.. .++...-+...+-... .+....+++..|.
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~~-~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTIR-IHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhhh-hhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 899999999999999999999999876 5555555555554443 3333445555443
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.97 E-value=2.8e-06 Score=49.67 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=47.3
Q ss_pred CcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHh
Q 047502 77 PKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSM 142 (145)
Q Consensus 77 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 142 (145)
.....+.-.|..+|.+++|.|+..|+..+...+ ...+..+..++..+|.|+||.||..|+..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 456678889999999999999999998887654 344556889999999999999999998753
No 95
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.93 E-value=0.00017 Score=52.75 Aligned_cols=137 Identities=20% Similarity=0.296 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCCcH-HHHHHHHHhhcCCC--CCcccHHHHHHHHhhhcC-----
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLIC-LGCDKSNAT-KEAEGMLKQMDYNG--DGFIDVDEFMDAVHDDSG----- 74 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~-l~~~~~~~~-~~~~~~~~~~d~~~--~~~i~~~ef~~~~~~~~~----- 74 (145)
++.+.++|...|.|++|.++-.|+...-.. ++.+..... +.++.++...-+++ ++.++..-|+.+......
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 567899999999999999999999987655 444444440 03333343333332 455666667766543000
Q ss_pred ------------------------------------CCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHH
Q 047502 75 ------------------------------------GKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLED 118 (145)
Q Consensus 75 ------------------------------------~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 118 (145)
...-...+..+|..||.++||.++..|+..+.......+++..-
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~ 353 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSP 353 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCc
Confidence 00113478999999999999999999999999998633322100
Q ss_pred HHHHHhccCCCCCCcccHHHHHHhh
Q 047502 119 CRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 119 ~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
.-...-.+..|.++|..|+..+
T Consensus 354 ---~~~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 354 ---YKDSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred ---ccccceecccceeehhhHHHHH
Confidence 0011112367889999888654
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00019 Score=41.47 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=47.8
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHh------CC---CCCCHHHH----HHHHhccCCCCCCcccHHHHHHhh
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINL------GC---DKCTLEDC----RRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~---~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
+.--..|+..|.+++|.|+--|+..++.-. |. +..++.++ +.+++.-|.|+||.|+|.||++..
T Consensus 67 qlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 67 QLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 333457889999999999999999888764 22 23456665 445566688999999999998753
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.52 E-value=0.00017 Score=30.56 Aligned_cols=27 Identities=30% Similarity=0.727 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLIC 33 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~ 33 (145)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777776653
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.47 E-value=0.00056 Score=49.43 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=53.0
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHhCC--CCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINLGC--DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
..++..|...| +++|+|+..++..++...+. .....++++.++...+.+.+|+|++++|+..+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 35677899998 89999999999999999762 12358889999999999999999999999854
No 99
>PLN02952 phosphoinositide phospholipase C
Probab=97.41 E-value=0.0031 Score=47.03 Aligned_cols=88 Identities=22% Similarity=0.324 Sum_probs=63.2
Q ss_pred CCCcccHHHHHHHHhhhc-CCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHhcc----C--
Q 047502 56 GDGFIDVDEFMDAVHDDS-GGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCD-KCTLEDCRRMIKGV----D-- 127 (145)
Q Consensus 56 ~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~----d-- 127 (145)
..|.++|++|..++.... ........+..+|..+..+ .+.||.++|..+|...++. ..+.+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357999999988877433 2333567899999999654 4789999999999998753 35666666665533 1
Q ss_pred -CCCCCcccHHHHHHhhc
Q 047502 128 -KDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 128 -~~~~g~i~~~ef~~~l~ 144 (145)
....+.+++++|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 11234589999998875
No 100
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.40 E-value=0.0027 Score=48.94 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHH---HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCc
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATK---EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPK 78 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 78 (145)
....+++..|..++....|.++.+++...+..+|........ ++..++...|++..|.+++.+|...+.+.......
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcH
Confidence 356788999999999999999999999999999998775311 45556666677777899999999999988777777
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHH
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRR 104 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~ 104 (145)
...+..+|..+-+++. +|..+++..
T Consensus 824 ~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7888888998877664 888888877
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.39 E-value=0.0018 Score=40.37 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=83.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhc---CCCCCccc---HHHHHHHHhhh------
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMD---YNGDGFID---VDEFMDAVHDD------ 72 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d---~~~~~~i~---~~ef~~~~~~~------ 72 (145)
..|++-..-+|+|+||.|.+-|.-..++++|...... .+-.++--.. +...+-+. |.=++.-+.+.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s--~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLS--LLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHH--HHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 3456666779999999999999999999999986544 2222221110 00111111 00011111110
Q ss_pred ----cCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCC------CCCCHHHHHHHHhccCCCCCCcccHHHHHHh
Q 047502 73 ----SGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGC------DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSM 142 (145)
Q Consensus 73 ----~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 142 (145)
....-..+..+.+|..++..+.+.||..|+..+++.... -..+.-|+..++... .+.+|.+..++...+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 011123468899999999988899999999999998531 122345566666665 577999988876543
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.36 E-value=0.00042 Score=29.25 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=14.2
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHH
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLI 107 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~ 107 (145)
+.+|+.+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3455555555556666666555554
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.32 E-value=0.0014 Score=36.04 Aligned_cols=63 Identities=13% Similarity=0.273 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCC----CCCcccHHHHHHHHh
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYN----GDGFIDVDEFMDAVH 70 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~ 70 (145)
+..+|..+.. +.+.|+.++|...|+.-........+.+..++..+.++ ..+.+++..|..++.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5566777744 56677777777777655444322222666666665443 245666666666654
No 104
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.29 E-value=0.0017 Score=44.42 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=79.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHH
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMD 84 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 84 (145)
..+...|..||.+++|.++.-+....+.-+..++... ..++--++.++...+|.+.=.++...+..... ...-.+..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~-~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTP-VIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcH-HHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 3467889999999999999887777776665554433 27788899999999998888777776653221 22335667
Q ss_pred HhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 85 AFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 85 ~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
.|...+...+|.|+.++|+.+....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 89999999999999999999988764
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0007 Score=48.70 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
|+.+++..-|+.+.++.+|.|+.+.-++++....++.. ++..||.+.|.+.+|.+++.||..++.+
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~----ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIE----ELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchH----HHHHHHhhcccCccccccHHHHHhhHhh
Confidence 67788889999999999999999999998887777665 8899999999999999999999999875
No 106
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0004 Score=53.84 Aligned_cols=133 Identities=21% Similarity=0.301 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhh----------
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDD---------- 72 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---------- 72 (145)
+...+..+|+.+.+. +|.++....+.++..-+++.. .+-++|...|.+.+|.++..+|...+...
T Consensus 127 e~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~----~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p 201 (847)
T KOG0998|consen 127 EQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSD----VLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEP 201 (847)
T ss_pred HHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChh----hhccccccccccccCCCChhhhhhhhhHHHHHhhcccCC
Confidence 456677889888665 888999988888876666554 56789999999999999999998876650
Q ss_pred --------------------------------------------------------------------------cCCCCc
Q 047502 73 --------------------------------------------------------------------------SGGKPK 78 (145)
Q Consensus 73 --------------------------------------------------------------------------~~~~~~ 78 (145)
......
T Consensus 202 ~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d 281 (847)
T KOG0998|consen 202 VPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSD 281 (847)
T ss_pred CCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHH
Confidence 001112
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
...+..+|...|.+.+|.|+..+....+...| +....+..++...+....|.+++.+|.-.+
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhh
Confidence 34556689999999999999999999988855 778889999999999999999999887543
No 107
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.16 E-value=0.00033 Score=45.99 Aligned_cols=64 Identities=30% Similarity=0.538 Sum_probs=45.5
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCC--CCHHHHHHHHhccCCCCCCcccHHHHHH
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDK--CTLEDCRRMIKGVDKDGDGFVDFEEFRS 141 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 141 (145)
....+..+|+..|-+.+|.||..++++.+..--..+ -+.++-+..|+..|.+++|.|+++||.-
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 445778888888888889999988888877631011 1223344567888888899999888863
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0014 Score=49.66 Aligned_cols=64 Identities=28% Similarity=0.443 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
...++++|..+|+...|+++..+-+.+|...+++.. .+-.||.+.|.|+||+++-+||+-.+..
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~----~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQN----QLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcCCchh----hHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 457889999999999999999999999998888766 6789999999999999999999998765
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.92 E-value=0.043 Score=42.69 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=84.0
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcC--CC-----CCcccHHHHHHHHhhhcCCCCcHHHHHHHhh
Q 047502 15 DSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDY--NG-----DGFIDVDEFMDAVHDDSGGKPKEDYLMDAFL 87 (145)
Q Consensus 15 d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~--~~-----~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 87 (145)
..+..|+|....+.+.+. -..... -+...+..+.. +. ....+++.|..++... -.+..+..+|.
T Consensus 158 qvn~~grip~knI~k~F~---~~k~~K--rVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl----cpR~eie~iF~ 228 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFS---ADKKEK--RVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL----CPRPEIEEIFR 228 (1189)
T ss_pred cccccccccHHHHHHHhh---cCCchh--HHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc----CCchhHHHHHH
Confidence 346778888666665543 222212 34444443332 11 1235577777777632 24468899999
Q ss_pred hHhcCCCCcccHHHHHHHHHHhCC---------CCCCHHHHHHHHhccCCCC----CCcccHHHHHHhhc
Q 047502 88 IFDINKNGLISAMELRRVLINLGC---------DKCTLEDCRRMIKGVDKDG----DGFVDFEEFRSMLS 144 (145)
Q Consensus 88 ~~d~~~~g~i~~~e~~~~l~~~~~---------~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~ 144 (145)
.+..++.-++|.++|..++..-+. +...+..+..++..+..+. .|.++-+.|+.+++
T Consensus 229 ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 229 KISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred HhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 999888899999999999998642 4567888999999998775 58999999999875
No 110
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.70 E-value=0.0094 Score=41.21 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=45.4
Q ss_pred CcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 77 PKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 77 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
.-...+.-+|..+|.+.+|.|+..|++.+-.. -.+.-++.+|+..|...||.|+-.|...++
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHHHHHhhhcccccCccccchhhhhh
Confidence 34566777888888888888888887766544 346677788888887778888887777654
No 111
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0091 Score=34.70 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=40.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhC------C-CCCCc-HHH----HHHHHHhhcCCCCCcccHHHHHHH
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLICLG------C-DKSNA-TKE----AEGMLKQMDYNGDGFIDVDEFMDA 68 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~l~------~-~~~~~-~~~----~~~~~~~~d~~~~~~i~~~ef~~~ 68 (145)
-.|...|-++++.|+.-++.+++--.. . +++.. +.+ +..+++--|.|++|.|+|-||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 467888999999999999998875442 2 22211 113 344455557778888888888764
No 112
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0082 Score=43.50 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=54.2
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
++.....|+..-.|-.|.|+-.--++++.... +.-.|+..+|...|.+.||.+++.||+..+
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 35666789999999999999998888888754 677899999999999999999999999765
No 113
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.0051 Score=47.97 Aligned_cols=131 Identities=24% Similarity=0.336 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhh------------
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDD------------ 72 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------------ 72 (145)
..+.++|+.+|..++|+|+..+-...+..-|+... .+-++|...|..+.|.++...|...+++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~q----vl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~ 86 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQ----VLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAK 86 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccccchh----hhhccccccccccCCccccccccccchHhhhhhcccCcCcc
Confidence 35678999999999999999999999887777655 66788999999988999999998887750
Q ss_pred ----------------------cCC-------------CCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHH
Q 047502 73 ----------------------SGG-------------KPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLE 117 (145)
Q Consensus 73 ----------------------~~~-------------~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~ 117 (145)
... .........+|+.+.+. +|.++....+.++.... +..+
T Consensus 87 ~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~---Lp~~ 162 (847)
T KOG0998|consen 87 KVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK---LPSD 162 (847)
T ss_pred ccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC---CChh
Confidence 000 00123455667777655 79999988888888754 6667
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 118 DCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 118 ~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
-+-.++...|.+.+|.++..+|.-.+
T Consensus 163 ~l~~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 163 VLGRIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred hhccccccccccccCCCChhhhhhhh
Confidence 78889999999999999999998654
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.34 E-value=0.033 Score=34.52 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=43.4
Q ss_pred HHHhhhH---hcCCCCcccHHHHHHHHHHhCC--CCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 83 MDAFLIF---DINKNGLISAMELRRVLINLGC--DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 83 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
+.+|..| -..+...++...|..+|+..+- ..++...++.+|..+-..+...|+|++|..+|.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 4455555 2455678888899999988742 347888888899887666666799999988764
No 115
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.96 E-value=0.1 Score=39.87 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=73.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
++..++...|.+.+|.+++.+-..++.. .........+...|+..+..++|.+...++..+..... .. + ++..+|
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~-~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~-~r--p-ev~~~f 211 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQ-LNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT-KR--P-EVYFLF 211 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHH-HHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc-cC--c-hHHHHH
Confidence 8899999999999999999988887663 22333455677788888888999999999999998876 22 2 677777
Q ss_pred hccCCCCCCcccHHHHHHhh
Q 047502 124 KGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 124 ~~~d~~~~g~i~~~ef~~~l 143 (145)
..+..+ .+.++..++..++
T Consensus 212 ~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 212 VQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHhCC-CCccCHHHHHHHH
Confidence 777544 7778888777765
No 116
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.75 E-value=0.077 Score=32.89 Aligned_cols=62 Identities=13% Similarity=0.324 Sum_probs=45.2
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHHhCCC---CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 8 RQIFKVM---DSNGDGKLSSSELGEVLICLGCD---KSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 8 ~~~f~~~---d~~~~g~i~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+.+|..| -..+...|+...|..+++..++- .+.. .+.-+|..+-..+..+|+|++|+.++..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~t--dvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTST--DVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HH--HHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchH--HHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4455555 35566789999999999999874 3334 7888999876666677999999998873
No 117
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.58 E-value=0.027 Score=46.00 Aligned_cols=58 Identities=19% Similarity=0.420 Sum_probs=50.3
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
..|+.||++|.|.|+..+|..++..- .+.+..+++-++.-...|.+..++|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 34778899999999999999998865 56788888889998999999999999998754
No 118
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.32 E-value=0.13 Score=32.35 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 114 CTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..++.++++|..++....+.+++.|...+++
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~ 123 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLK 123 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 4567788888888877777888888877653
No 119
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.23 E-value=0.042 Score=41.15 Aligned_cols=59 Identities=25% Similarity=0.206 Sum_probs=40.6
Q ss_pred CcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHH
Q 047502 77 PKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFE 137 (145)
Q Consensus 77 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 137 (145)
.....+..+|+.+|.+++|.||..++..-+..+. ..-.-+-+.-+|..++.+++ ..+.+
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccc
Confidence 3445677788888888888888888888877765 44444556677777777666 44433
No 120
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.19 E-value=0.017 Score=39.74 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
.+...|..+|.+.++.|.+.|++.+=+-+-...-...-.+.+++..|.|+|-.|++.|+..+|
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 455567777888777777776554433322112223445677777788888888888777665
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.99 E-value=0.036 Score=29.37 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=38.6
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhcc---C-C---CCCCcccHHHHHHhh
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGV---D-K---DGDGFVDFEEFRSML 143 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~---d-~---~~~g~i~~~ef~~~l 143 (145)
+.+.+..+|+.+ .++.++||.++|++.+..-+ +.-+...+ . . ...|.++|..|+..|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~--------aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ--------AEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC--------HHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCcHH--------HHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 456788999999 67789999999999877543 23333333 2 1 123779999998654
No 122
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.42 E-value=0.12 Score=35.97 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCC---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHH
Q 047502 6 QFRQIFKVMDSNGDGKLSSSELGEVLICLGC---DKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYL 82 (145)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 82 (145)
+|+..|..+=.+.++......+......+.. +.-.. ++.=||...|.|.++.++..|...... ...+..+
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKd--s~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~Ci 284 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKD--SLGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACI 284 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhh--hhhhhhhccccccccccCHHHhhhhhc-----cCchhHH
Confidence 5566676665666666666666665444322 23334 778899999999999999999777654 2456788
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
+..|...|...+|.|+..|....+....
T Consensus 285 kpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHHhhhcccccCccccchhhhhhccCC
Confidence 9999999999999999999888877754
No 123
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.38 E-value=0.037 Score=38.17 Aligned_cols=66 Identities=21% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
.+.-.|..+|.|.++.++..||..+=.............+.+|+..|.++|..|+..|+...|...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 344556788999999999777666544333444566778899999999999999999999888765
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.34 E-value=0.081 Score=39.73 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMEL 102 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~ 102 (145)
...++|...|.+.+|.++|.+++..+... ......+.+...|+.+|++++ ....++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l-~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSIL-KAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHH-HhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 66889999999999999999999998743 333455688889999999998 8888887
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=94.21 E-value=1.4 Score=33.59 Aligned_cols=90 Identities=6% Similarity=0.010 Sum_probs=61.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCC-CcHHHHHHHhhhH----h--
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGK-PKEDYLMDAFLIF----D-- 90 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----d-- 90 (145)
+.|.++.++|..+.+.+.......++++..+|..+...+ +.++.++|..++....... .....+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999998888776544333338999999986543 6799999999998654432 2333444444332 1
Q ss_pred -cCCCCcccHHHHHHHHHH
Q 047502 91 -INKNGLISAMELRRVLIN 108 (145)
Q Consensus 91 -~~~~g~i~~~e~~~~l~~ 108 (145)
..+.+.++.+.|..++..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 123456899999999864
No 126
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.19 E-value=0.13 Score=38.46 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHH
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLM 83 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 83 (145)
+..+..+|..+|.++||.++..++..++....-.+.....+... .-.+..|.+++.-|+..++...........-.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~ 389 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLNGFLSQWSLMTLLDPRRTLEY 389 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehhhHHHHHHHHhhccHHHHHHH
Confidence 56788999999999999999999999998876555221001111 11235799999999999986444433333334
Q ss_pred HHhhhHhcC
Q 047502 84 DAFLIFDIN 92 (145)
Q Consensus 84 ~~f~~~d~~ 92 (145)
.+|--|..+
T Consensus 390 L~Ylgf~~~ 398 (625)
T KOG1707|consen 390 LAYLGFPTD 398 (625)
T ss_pred HHhcCCccc
Confidence 455555544
No 127
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.16 E-value=0.12 Score=38.44 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
++....+..|..+|.+..|+++..++..+++..+...+.. .+.+++...+.+.+|.+...+|...+..
T Consensus 590 ~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~--~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 590 EDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDED--RLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 4566777889999999999999999999999888666655 7888888888888888999998887764
No 128
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.82 E-value=0.12 Score=38.46 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=56.5
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
..+..|..+|.++.|+++..+...+++..+ ..++++.+..++...+....|.+...+|.++++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 456678999999999999999999999998 789999999999999988899999999987653
No 129
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.77 E-value=0.65 Score=26.03 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHh-------CC---CCCCHHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINL-------GC---DKCTLEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
++++.+|+.+ .|.+|.++...|..++... +. ....+..++.+|.... ....|+.++|+.-++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 5677888888 5778999999998888874 21 1226777888888873 456799999987654
No 130
>PLN02222 phosphoinositide phospholipase C 2
Probab=93.55 E-value=0.52 Score=35.59 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=41.6
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHhccCC-CCCCcccHHHHHHhhc
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRRVLINLGCD-KCTLEDCRRMIKGVDK-DGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~ 144 (145)
...+..+|..+.. ++.++.++|..+|...++. ..+.+.+..++..+.. ...+.++++.|..+|.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3467777777753 4678888888888777643 3456666677766532 2345677888877764
No 131
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.38 E-value=0.67 Score=32.06 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHh-CCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 23 SSSELGEVLICL-GCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 23 ~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
|..++..++... |+.+..- .-+.+|...|.|++|.++=.+..+++.
T Consensus 225 SkdQLkEVWEE~DgLdpn~f--dPKTFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQF--DPKTFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred cHHHHHHHHHHhcCCCcccC--CcchheeeeccCCcccccHHHHHHHHH
Confidence 344555555443 3343333 344556666666666666555555544
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=93.21 E-value=0.84 Score=34.46 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=37.3
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHhccCCC----CCCcccHHHHHHhhc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCD-KCTLEDCRRMIKGVDKD----GDGFVDFEEFRSMLS 144 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~ 144 (145)
....+..+|..+.. ++.++.++|..++...++. ..+.+.+..++..+... ..|.++++.|..+|.
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 44566666666643 2467777777777666532 23444556666655432 234577777776654
No 133
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.79 E-value=0.52 Score=37.16 Aligned_cols=65 Identities=26% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCC-----HHHHHHHHhccCCCCCCcccHHHHHHhhc
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCT-----LEDCRRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
...++..|..++....|.++++++...+..+| ...- .+++..++...|.+..|.+++.+|...|.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLG-YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 35788999999999999999999999999998 4443 23455566666777779999999998774
No 134
>PLN02230 phosphoinositide phospholipase C 4
Probab=92.46 E-value=1.2 Score=33.93 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=46.8
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHhccC-------CCCCCcccHHHHHHhhc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCD--KCTLEDCRRMIKGVD-------KDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~l~ 144 (145)
....+..+|..+..++ +.+|.++|..+|...++. ..+.+++..++..+. .-..+.++++.|..+|.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 4568889999996444 899999999999998732 345666666665432 11245699999998875
No 135
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=92.25 E-value=1 Score=25.66 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHH----hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCC
Q 047502 18 GDGKLSSSELGEVLIC----LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINK 93 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~ 93 (145)
-||.++..|...+-.. ++++ .. ....++..+........++.+|...+............+..++...- -
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--A 85 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLD--AE--EAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--A 85 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcC--HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--h
Confidence 4888998887776543 3433 23 56666666655545567888888887754323334455666666653 3
Q ss_pred CCcccHHHHHHH
Q 047502 94 NGLISAMELRRV 105 (145)
Q Consensus 94 ~g~i~~~e~~~~ 105 (145)
||.++..|-.-+
T Consensus 86 DG~~~~~E~~~l 97 (104)
T cd07313 86 DGELDEYEEHLI 97 (104)
T ss_pred cCCCCHHHHHHH
Confidence 578887774433
No 136
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.75 E-value=0.35 Score=40.19 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=46.4
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
..|+.+|+++.|.|+..+|.+++..-... +.. ++.-++.-...+.+..++|++|+..+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~y-tqs--e~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHY-TQS--EIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccc-hhH--HHHHHHHhhccCccccccHHHHHHHhcC
Confidence 35788899999999999999998754332 233 5666777667788889999999987664
No 137
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.15 E-value=2.2 Score=26.01 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=62.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHH----hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHH
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLIC----LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMD 84 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 84 (145)
-.|+.+.. ||.++..|...+..- +|++.. .+..++.....-+.-.+++..|-..+.+........+.+..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~----~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~ 107 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGE----ELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGL 107 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45667654 566777765554433 344433 66777766655555668888888888765555555667777
Q ss_pred HhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHH
Q 047502 85 AFLIFDINKNGLISAMELRRVLINLGCDKCTLED 118 (145)
Q Consensus 85 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 118 (145)
++... ..||.++.-|-.-+++......+++.+
T Consensus 108 mweIa--~ADg~l~e~Ed~vi~RvAeLLgV~~~d 139 (148)
T COG4103 108 MWEIA--YADGELDESEDHVIWRVAELLGVSPED 139 (148)
T ss_pred HHHHH--HccccccHHHHHHHHHHHHHhCCCHHH
Confidence 77765 345778777766666654323344444
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.66 E-value=0.89 Score=27.68 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhc-------CCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHh
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMD-------YNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFD 90 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d 90 (145)
..+.|++.||.++-+=+-+ +.. .+++++..+. .+..+.|+|+-|..++..-.....+.+..+.+|..|-
T Consensus 4 ~~~~lsp~eF~qLq~y~ey--s~k--klkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY--STK--KLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH--------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred ceeccCHHHHHHHHHHHHH--HHH--HHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4567899988886543333 222 4777887773 3345679999999998865555567788999999986
Q ss_pred cCC
Q 047502 91 INK 93 (145)
Q Consensus 91 ~~~ 93 (145)
...
T Consensus 80 ~~~ 82 (138)
T PF14513_consen 80 KKP 82 (138)
T ss_dssp ---
T ss_pred Ccc
Confidence 554
No 139
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.12 E-value=0.27 Score=34.69 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
+.+++.|+.+|+.++|+|+.+-+..++..++...++.. ++-.+-..+|+..-|.|-..+|.....
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a-~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPA-YVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHH-HHHHhcCccChhhcceEEecccccccc
Confidence 57899999999999999999999999999985555541 555555566777666666666655444
No 140
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=89.35 E-value=1.1 Score=25.87 Aligned_cols=20 Identities=10% Similarity=0.416 Sum_probs=9.3
Q ss_pred HhcCCCCcccHHHHHHHHHH
Q 047502 89 FDINKNGLISAMELRRVLIN 108 (145)
Q Consensus 89 ~d~~~~g~i~~~e~~~~l~~ 108 (145)
||+..+.+||.+++.++++.
T Consensus 12 YDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cCCCccceeeHHHHHHHHHC
Confidence 44444444444444444444
No 141
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.16 E-value=1.1 Score=35.21 Aligned_cols=134 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHH--
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMD-- 84 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~-- 84 (145)
++..+...|.+....|+..++..++....+..+..+ .+.+-+..... +.+.++|.+|..++...+........+.-
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~k-fl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~ 223 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAK-FLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQKAILLEFKK 223 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHH-HHHHHHhHhhh-ccccccHHHHHHHHHHHhhccchhhhhcccc
Confidence 345555667667777999999999988888776542 33333333333 34669999999998865544333221111
Q ss_pred Hh--hhHhcCCCCcccHHHHHHHHHHhCCCCCCHH---HHHHHHhccC----CC-CCCcccHHHHHHhh
Q 047502 85 AF--LIFDINKNGLISAMELRRVLINLGCDKCTLE---DCRRMIKGVD----KD-GDGFVDFEEFRSML 143 (145)
Q Consensus 85 ~f--~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~---~~~~~~~~~d----~~-~~g~i~~~ef~~~l 143 (145)
.| ..-+...--.|+..+|.+++...+. ..... .+..++..+- .+ ....+.+.||+.+|
T Consensus 224 ~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~-e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 224 DFILGNTDRPDASVVYLQEFQRFLIHEQQ-EHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred hhhhcCCCCccceEeeHHHHHHHHHhhhH-HHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 11 1111122257999999999988752 22222 2333333331 11 24578999999876
No 142
>PLN02223 phosphoinositide phospholipase C
Probab=88.61 E-value=3.3 Score=31.13 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=46.5
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHH---HHhCC-CCCCHHHHHHHHhccCCC--------CCCcccHHHHHHhhc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVL---INLGC-DKCTLEDCRRMIKGVDKD--------GDGFVDFEEFRSMLS 144 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~~~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l~ 144 (145)
....++.+|..+. ++.|.++.+.+..++ ...++ ...+.++.+.+++.+-.. ..+.++.+.|..+|.
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 4467888898884 667899999998888 55443 345666777777654322 235699999998875
No 143
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.97 E-value=5.2 Score=27.92 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=55.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHH----hCCCCCCcHHHH-----------HHHHHhhcCCCCCcccHHHHHHHHhhhc
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLIC----LGCDKSNATKEA-----------EGMLKQMDYNGDGFIDVDEFMDAVHDDS 73 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~----l~~~~~~~~~~~-----------~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 73 (145)
..|...|.|++|.++..++..++.. +..+.+..+ ++ ..++..+|.|.+.-|+.++|+..-....
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeD-DM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEED-DMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 3566778899999999998887632 333322221 22 3466778999999999999998755332
Q ss_pred CCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHH
Q 047502 74 GGKPKEDYLMDAFLIFDINKNGLISAMELRRVLIN 108 (145)
Q Consensus 74 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 108 (145)
...+ .+. |..+ +.....|-++++++=+.
T Consensus 327 f~~p-~e~----WEtl--~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 327 FNPP-KEE----WETL--GQKKVYTEEELQQFERE 354 (442)
T ss_pred cCCc-chh----hhhh--cccccccHHHHHHHHHH
Confidence 2222 122 2222 22345566666665444
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.83 E-value=0.38 Score=29.24 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCC-------CCCCcccHHHHHHhhc
Q 047502 94 NGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDK-------DGDGFVDFEEFRSMLS 144 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~ 144 (145)
-+.||.+||.+.-+-+. .+..-++.++..+.. +..+.|+|+.|..+|.
T Consensus 5 ~~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp -S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 36778888887766654 123345566665532 2355799999988774
No 145
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.37 E-value=3.6 Score=23.10 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------CCCC----CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICL-------GCDK----SNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l-------~~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
.+++-+|..+ .+++|.++...|..+|+.+ |-.. ... .++..|.... ....|+-++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~--sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEP--SVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HH--HHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHH--HHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5677888888 7789999999999988654 1111 222 4555555542 3445777888877764
No 146
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=85.21 E-value=1.1 Score=27.04 Aligned_cols=80 Identities=26% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCC
Q 047502 18 GDGKLSSSELGEVLICL--GCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNG 95 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l--~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g 95 (145)
-||.|+.+|...+...+ ....+.. ....+...++.......++.+++..+............+..++.....| |
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G 111 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPE--EAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--G 111 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCH--HHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--T
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--C
Confidence 48889988888877666 1222223 4555555555433345777788776653222222334556666665444 5
Q ss_pred cccHHH
Q 047502 96 LISAME 101 (145)
Q Consensus 96 ~i~~~e 101 (145)
.++..|
T Consensus 112 ~~~~~E 117 (140)
T PF05099_consen 112 EISPEE 117 (140)
T ss_dssp C-SCCH
T ss_pred CCCHHH
Confidence 565554
No 147
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=1.4 Score=31.37 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=43.5
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHH-HHHHHhccCCCCCCcccHHHHH
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLED-CRRMIKGVDKDGDGFVDFEEFR 140 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef~ 140 (145)
.+.++++|+.+|+.++|+|+..-++.++.... ..+++.+ +..+=...++..-|.|-..+|.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N-~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALN-RLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhc-ccccCHHHHHHhcCccChhhcceEEecccc
Confidence 56889999999999999999999999999987 4454444 3333334555555555555443
No 148
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=82.67 E-value=7.5 Score=28.44 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCCcccHHHHHHHHHHhCCC----CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcC
Q 047502 17 NGDGKLSSSELGEVLICLGCD----KSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDIN 92 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~ 92 (145)
+++...+..+|+.+..-.... .+-. -+..|-+.+|-+.+|.|+.+|=-.++...+........-...|. .
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~E--Air~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH---~- 113 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYE--AIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH---G- 113 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHH--HHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc---C-
Confidence 344455555665543222211 2223 67888899999999999998866666654444333333333333 2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047502 93 KNGLISAMELRRVLINLGCDKCTLEDCRRMI 123 (145)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (145)
.|..||.+++..+|....-..++.+++-+++
T Consensus 114 dD~~ItVedLWeaW~~Sev~nWT~e~tvqWL 144 (575)
T KOG4403|consen 114 DDKHITVEDLWEAWKESEVHNWTNERTVQWL 144 (575)
T ss_pred CccceeHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 4689999999999988653456666654443
No 149
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=82.16 E-value=2.3 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVL 31 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l 31 (145)
.+++...|+.+ .++.++||..+|+..|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 46778899999 7789999999999975
No 150
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=81.72 E-value=14 Score=25.26 Aligned_cols=102 Identities=8% Similarity=0.090 Sum_probs=56.9
Q ss_pred CCCCcccHHHHHHHHHH----hCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcH--HHHHHHhhhHh
Q 047502 17 NGDGKLSSSELGEVLIC----LGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKE--DYLMDAFLIFD 90 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~--~~~~~~f~~~d 90 (145)
.-||.|+..|.. +.+. ++++.... ..+..++..- .....++.+|...+.......+.. ..+..+|...=
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r-~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~ 141 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEAR-RAAQQAFREG---KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF 141 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHH-HHHHHHHHHh---cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 358999999887 3333 45543321 1355555543 334488999999887544222211 12244444442
Q ss_pred cCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhc
Q 047502 91 INKNGLISAMELRRVLINLGCDKCTLEDCRRMIKG 125 (145)
Q Consensus 91 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 125 (145)
-||.++..|-.-+.+-.....++..++..+...
T Consensus 142 --ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 142 --ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred --hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 358888888444433333245777777776654
No 151
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=81.68 E-value=13 Score=27.74 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=44.1
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh---cC-----CCCCcccHHHHHHHHh
Q 047502 9 QIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM---DY-----NGDGFIDVDEFMDAVH 70 (145)
Q Consensus 9 ~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---d~-----~~~~~i~~~ef~~~~~ 70 (145)
-+|..+...+.+.++...|.++|++.|+..+++ -++.++..+ +. ...+.++.+.|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDP--RLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDP--RLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCc--hHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 356667555569999999999999999998887 566665433 32 2346788888888765
No 152
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=81.24 E-value=2.8 Score=21.82 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=26.2
Q ss_pred hhHhcCCCCcccHHHHHHHHHHhC---------CCCCCHHHHHHHHh
Q 047502 87 LIFDINKNGLISAMELRRVLINLG---------CDKCTLEDCRRMIK 124 (145)
Q Consensus 87 ~~~d~~~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~ 124 (145)
+.||...+.+||.+++.++++.-. +..++...+.+++-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~ 56 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIIL 56 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHH
Confidence 457888899999999999988741 14555555555443
No 153
>PLN02222 phosphoinositide phospholipase C 2
Probab=81.23 E-value=13 Score=28.49 Aligned_cols=65 Identities=14% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcC-CCCCcccHHHHHHHHhh
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDY-NGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~~ 71 (145)
.++..+|..+.. ++.|+.++|..+|....-......+.+..++..+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 467888888843 579999999999988765433222267777776532 23466999999998764
No 154
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=80.88 E-value=6.5 Score=20.80 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHH
Q 047502 100 MELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFR 140 (145)
Q Consensus 100 ~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 140 (145)
+++..++...+ ..++.+++.++++.-+..+--.++-..+.
T Consensus 17 ~~m~~if~l~~-~~vs~~el~a~lrke~~~~y~~c~D~~L~ 56 (68)
T PF07308_consen 17 DDMIEIFALAG-FEVSKAELSAWLRKEDEKGYKECSDQLLR 56 (68)
T ss_pred HHHHHHHHHcC-CccCHHHHHHHHCCCCCccccccChHHHH
Confidence 34555555555 56666666666665443333333333333
No 155
>PLN02228 Phosphoinositide phospholipase C
Probab=79.41 E-value=20 Score=27.49 Aligned_cols=65 Identities=12% Similarity=0.317 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCC----CCCcccHHHHHHHHhh
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYN----GDGFIDVDEFMDAVHD 71 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~ 71 (145)
.++..+|..+.. ++.|+.++|..+|....-........+..++..+.+. ..+.++...|..++..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 467788888743 3579999999999877544322212677888877543 2366999999888753
No 156
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=79.25 E-value=5.1 Score=22.84 Aligned_cols=82 Identities=16% Similarity=0.074 Sum_probs=42.3
Q ss_pred CCCcccHHHHHHHHHHhCCC--CCCc-HHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCC
Q 047502 18 GDGKLSSSELGEVLICLGCD--KSNA-TKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKN 94 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~--~~~~-~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 94 (145)
-||.++..|...+.+.+... .+.. ...+..++...-..- -..+..++...+............+..++.... -|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~--aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAA--AD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--cc
Confidence 48889999988888776422 2111 113444443332210 023346666666543332233344555555553 34
Q ss_pred CcccHHHH
Q 047502 95 GLISAMEL 102 (145)
Q Consensus 95 g~i~~~e~ 102 (145)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 77777663
No 157
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.84 E-value=7.6 Score=30.15 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=49.3
Q ss_pred ccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCC-------CCCCHHHHHHHHhccCCCCCC
Q 047502 60 IDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGC-------DKCTLEDCRRMIKGVDKDGDG 132 (145)
Q Consensus 60 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~~d~~~~g 132 (145)
++++++. ......+..++..|..+|. ++|.++.+++..++...-. ...+.+....++...+.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 6777776 3344566777888888877 7788888888877766421 223344455677777777777
Q ss_pred cccHHHHHHh
Q 047502 133 FVDFEEFRSM 142 (145)
Q Consensus 133 ~i~~~ef~~~ 142 (145)
.+.+.++...
T Consensus 77 y~~~~~~~~l 86 (646)
T KOG0039|consen 77 YITNEDLEIL 86 (646)
T ss_pred eeeecchhHH
Confidence 6666555443
No 158
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=78.38 E-value=6.6 Score=20.49 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM 52 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 52 (145)
.+..|+.+.++..+..+|-.++.. .++++++..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSek--qi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEK--QIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHH--HHHHHHHHH
Confidence 467799999999999999999988 888888754
No 159
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.90 E-value=8.5 Score=20.43 Aligned_cols=34 Identities=6% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 047502 17 NGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM 52 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 52 (145)
..|..|+.+.++..+...|..+++. .++++++..
T Consensus 34 k~NPpine~~iR~M~~qmGqKpSe~--kI~Qvm~~i 67 (71)
T COG3763 34 KDNPPINEEMIRMMMAQMGQKPSEK--KINQVMRSI 67 (71)
T ss_pred hhCCCCCHHHHHHHHHHhCCCchHH--HHHHHHHHH
Confidence 3477899999999999999999988 888888754
No 160
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.86 E-value=3.7 Score=16.25 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=10.4
Q ss_pred cCCCCCcccHHHHHHHH
Q 047502 15 DSNGDGKLSSSELGEVL 31 (145)
Q Consensus 15 d~~~~g~i~~~~~~~~l 31 (145)
|-|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 45677777777665543
No 161
>PRK00523 hypothetical protein; Provisional
Probab=77.70 E-value=6.9 Score=20.92 Aligned_cols=33 Identities=6% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM 52 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 52 (145)
.|..|+.+.++..+..+|..+++. .++++++..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSek--ki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSES--QIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHH--HHHHHHHHH
Confidence 477899999999999999999988 898888765
No 162
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=77.41 E-value=1.1 Score=29.04 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=38.7
Q ss_pred hhhHhcC-CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 86 FLIFDIN-KNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 86 f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
|-.+|.. -+|+++-.|+.-+-.. ..+.+.-+..+|...|.|+||.|+++|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap---~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP---LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCC---cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3345543 5788888876544322 22345667889999999999999999987654
No 163
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=76.98 E-value=7.9 Score=20.60 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=36.8
Q ss_pred cccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 047502 59 FIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIK 124 (145)
Q Consensus 59 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 124 (145)
.+.|......+... .....+..+...|+.=..+.|++++|.+.++..- -+.-+..++.
T Consensus 8 ~~~F~~L~~~l~~~----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV----GD~lL~s~I~ 65 (70)
T PF12174_consen 8 WMPFPMLFSALSKH----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV----GDQLLRSAIK 65 (70)
T ss_pred cccHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HHHHHHHHHH
Confidence 36666666666532 2334556666666666789999999999999863 1444444443
No 164
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=76.46 E-value=7 Score=22.34 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcC---CCCcccHHHHHHHHHHh
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDIN---KNGLISAMELRRVLINL 109 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~---~~g~i~~~e~~~~l~~~ 109 (145)
.|+.=|..+.. +|.+....|-.++.. ..+.+....+|..+... ....|+.+|+..++..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM----~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGM----KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCC----cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 45555555544 677777777777652 14555666666665432 24677777777777665
No 165
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=76.12 E-value=41 Score=27.46 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCC---------cHHHHHHHhhhHhcC----CCCcccHHHHHHHHHHh
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKP---------KEDYLMDAFLIFDIN----KNGLISAMELRRVLINL 109 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~---------~~~~~~~~f~~~d~~----~~g~i~~~e~~~~l~~~ 109 (145)
++..+|..+.-+....++.++++.+++...+.+. ....+..+...|-++ ..|.++.+-|...+..-
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 7899999998887788999999999987544322 334667777777655 46999999998888763
No 166
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=72.65 E-value=4.4 Score=22.98 Aligned_cols=53 Identities=9% Similarity=-0.058 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHhhhcC-CCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 57 DGFIDVDEFMDAVHDDSG-GKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 57 ~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
||.++-.|-..+-..... ..........+...+........+..++...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 678887775554332111 12334455666666655555667777777776653
No 167
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.62 E-value=4.1 Score=34.84 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC----CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDK----SNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
+..+.+.++|..+|++..|+|...++..+++.+.-+. ..+ . +.+.-..-..+++.|++.+-+.++.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~--~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNK--R-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCC--c-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 4578899999999999999999999999999885443 222 1 22222233446788999988888775
No 168
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=72.57 E-value=4.7 Score=23.73 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
.++.++..+-.|..|+|.|.+|+.-+..
T Consensus 8 QFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 8 QFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp HHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred HhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 7889999999999999999999998763
No 169
>PRK01844 hypothetical protein; Provisional
Probab=72.51 E-value=11 Score=20.20 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM 52 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 52 (145)
.+..|+.+.++..+...|..+++. .++++.+..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSek--ki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQK--KINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHH--HHHHHHHHH
Confidence 467899999999999999999988 888888765
No 170
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=69.13 E-value=25 Score=21.95 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=45.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCc
Q 047502 17 NGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGL 96 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~ 96 (145)
+.+-.++.+.+.++++..-=....-..+.+..++.+ ..||+.++.. .+-......+...
T Consensus 28 eqDr~LPIANV~RIMK~~lP~naKIsKDAKE~vQEC---------VSEfISFvT~------------EAsekC~~EkRKT 86 (168)
T KOG0869|consen 28 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQEC---------VSEFISFVTG------------EASEKCQREKRKT 86 (168)
T ss_pred hhhhhccHHHHHHHHHhcCCcccccchHHHHHHHHH---------HHHHHHHHhh------------HHHHHHHHHhcCc
Confidence 345567777777777654211111112556666554 3678888762 2333344567789
Q ss_pred ccHHHHHHHHHHhC
Q 047502 97 ISAMELRRVLINLG 110 (145)
Q Consensus 97 i~~~e~~~~l~~~~ 110 (145)
|+-+++..+|.++|
T Consensus 87 IngdDllwAm~tLG 100 (168)
T KOG0869|consen 87 INGDDLLWAMSTLG 100 (168)
T ss_pred ccHHHHHHHHHHcC
Confidence 99999999999988
No 171
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=67.48 E-value=19 Score=19.98 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHH
Q 047502 21 KLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDE 64 (145)
Q Consensus 21 ~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~e 64 (145)
.||..||..+.+..+++.+.. .+..++...--++-...+-++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~--QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKK--QAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCCCCCCHHH
Confidence 489999999999999999988 788888876544433333333
No 172
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.09 E-value=21 Score=26.06 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAV 69 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 69 (145)
+..+|..+.+ -+|.|+...-.+.+-...++. . .+-.+|...|.+.+|.++=+||.-+-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~sklpn--s--vlgkiwklad~d~dg~ld~eefala~ 503 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPN--S--VLGKIWKLADIDKDGMLDDEEFALAN 503 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhccCch--h--HHHhhhhhhcCCcccCcCHHHHHHHH
Confidence 4456766644 478888777777665444444 3 77889999999999999988887653
No 173
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=65.07 E-value=6.3 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=14.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHhcc
Q 047502 94 NGLISAMELRRVLINLGCDKCTLEDCRRMIKGV 126 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (145)
.|+||..++..++.. ..++++.+..++..+
T Consensus 19 ~G~lT~~eI~~~L~~---~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPE---DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S----S---HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCc---cCCCHHHHHHHHHHH
Confidence 466666666666664 235555666665554
No 174
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=64.98 E-value=17 Score=18.66 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHhcc
Q 047502 95 GLISAMELRRVLINLGCDKCTLEDCRRMIKGV 126 (145)
Q Consensus 95 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (145)
-.+|.+|+..++..++ ..++..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~-~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLD-EIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 4677888888888887 777777777776655
No 175
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=64.89 E-value=11 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHH
Q 047502 96 LISAMELRRVLINLGCDKCTLEDCRR 121 (145)
Q Consensus 96 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 121 (145)
.|+.++|..+++... ..++.+++..
T Consensus 29 ~it~~DF~~Al~~~k-pSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVK-PSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCG-GSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHH
Confidence 578888888888877 7777777765
No 176
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=64.85 E-value=38 Score=22.42 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=9.8
Q ss_pred HHHHHHHHHhCCCCC
Q 047502 25 SELGEVLICLGCDKS 39 (145)
Q Consensus 25 ~~~~~~l~~l~~~~~ 39 (145)
.+|..++..+|+.+.
T Consensus 61 ~~f~~~~~~lGvdp~ 75 (223)
T PF04157_consen 61 SQFQSMCASLGVDPL 75 (223)
T ss_dssp HHHHHHHHHHT--CH
T ss_pred HHHHHHHHHcCCCcc
Confidence 578888888888654
No 177
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=64.84 E-value=16 Score=17.97 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLK 50 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 50 (145)
++...|...|.. +.+.+..+...+...+|+... .|...|.
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~~~----qV~~WF~ 49 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKELGLTER----QVKIWFQ 49 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHH----HHHHHHH
Confidence 345566676655 557888888888888876554 5555554
No 178
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=63.60 E-value=15 Score=23.62 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=21.7
Q ss_pred hcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 047502 90 DINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVD 127 (145)
Q Consensus 90 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d 127 (145)
..+.+|++..+++...+...+ ..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~-~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG-LWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcC-CCCCHHHHHHHHhhCC
Confidence 356778888888888888765 5677888888776544
No 179
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=62.50 E-value=16 Score=17.36 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcCC--CCCcccHHHHHHHHH
Q 047502 4 SSQFRQIFKVMDSN--GDGKLSSSELGEVLI 32 (145)
Q Consensus 4 ~~~~~~~f~~~d~~--~~g~i~~~~~~~~l~ 32 (145)
+..+-.+|+.+... ....++..+|+.++.
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 44556667666422 344677777777764
No 180
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=61.61 E-value=23 Score=22.74 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=23.3
Q ss_pred cCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 047502 91 INKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVD 127 (145)
Q Consensus 91 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d 127 (145)
.+.+|++..+++...++..+ ..++.+++..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~-~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY-KWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc-CCCCHHHHHHHHHcCC
Confidence 45677777777777776544 4567777776665443
No 181
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=59.41 E-value=37 Score=20.42 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=20.4
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
.+.-++..||++++|.|+.-.|+-.+..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 34567888999999999999988877653
No 182
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=59.18 E-value=31 Score=19.45 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcC--CCCcHHHHHHHhhhHhcCCC
Q 047502 18 GDGKLSSSELGEVLICLGCD-KSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSG--GKPKEDYLMDAFLIFDINKN 94 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~d~~~~ 94 (145)
-||.++.+|...+-..+... .... ....+...+..-.....++.+|...+..... .......+..++...-. |
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--D 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAE--ARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--D 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--c
Confidence 48889988776665443221 1111 2333333333222222677888887765332 22234455666665543 5
Q ss_pred CcccHHHHH
Q 047502 95 GLISAMELR 103 (145)
Q Consensus 95 g~i~~~e~~ 103 (145)
|.++..|-.
T Consensus 88 G~~~~~E~~ 96 (106)
T cd07316 88 GELSEAERE 96 (106)
T ss_pred CCCCHHHHH
Confidence 788877743
No 183
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=58.86 E-value=25 Score=21.41 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=38.7
Q ss_pred CCCcccHHHHHHHHHHhCC--------CCCCHHHHHHHHhccCCCCCC-cccHHHHHHh
Q 047502 93 KNGLISAMELRRVLINLGC--------DKCTLEDCRRMIKGVDKDGDG-FVDFEEFRSM 142 (145)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~--------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 142 (145)
|+..||.+||.+++..-.. ..+.++++..+...+.....+ .+++.|.+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6789999999999987531 345888999999988775555 4998887764
No 184
>PLN02230 phosphoinositide phospholipase C 4
Probab=58.78 E-value=85 Score=24.47 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-CCcHHHHHHHHHhhcCC-------CCCcccHHHHHHHHhh
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDK-SNATKEAEGMLKQMDYN-------GDGFIDVDEFMDAVHD 71 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~~~~~ 71 (145)
.++..+|..+. .+++.|+.++|..+|..-.-.. ....+.+..++..+-.. ..+.++...|..++..
T Consensus 29 ~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 46788898884 3448999999999998876322 11111556666543211 2345999999987753
No 185
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=58.57 E-value=33 Score=19.59 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhcc
Q 047502 60 IDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGV 126 (145)
Q Consensus 60 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (145)
+.-.+|..+++...+. ...+.+..+-..+-..+....+..++..++...-....+++++..+-...
T Consensus 20 vP~~Dy~PLlALL~r~-Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRR-LTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhccc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 7777888887754444 56667777777776666677788888888888765677888887766554
No 186
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.07 E-value=11 Score=23.14 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=10.8
Q ss_pred CCHHHHHHHHhccCCCCCCcccHHHHHH
Q 047502 114 CTLEDCRRMIKGVDKDGDGFVDFEEFRS 141 (145)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 141 (145)
++.+++..++.....-+...+++..|..
T Consensus 63 i~~~~l~ali~~~e~~~~Ea~d~y~fts 90 (148)
T COG4103 63 IDGEELDALIEAGEEAGYEAIDLYSFTS 90 (148)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444333333333344444433
No 187
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=56.96 E-value=16 Score=25.04 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcH
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNAT 42 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~ 42 (145)
+.-+|..+....-|.++++++.++.+.+|+..++++
T Consensus 180 LsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPR 215 (364)
T KOG0455|consen 180 LSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPR 215 (364)
T ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCcc
Confidence 445788887667788999999999999999877663
No 188
>PLN02223 phosphoinositide phospholipase C
Probab=55.92 E-value=92 Score=23.94 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCC--CCCcHHHHHHHHHhhcCCC--------CCcccHHHHHHHHhh
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICL---GCD--KSNATKEAEGMLKQMDYNG--------DGFIDVDEFMDAVHD 71 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l---~~~--~~~~~~~~~~~~~~~d~~~--------~~~i~~~ef~~~~~~ 71 (145)
..++.+|..+ ..++|.++..++.+++.-| .-. .+.. +++.++..+-... .+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~--~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLN--AAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHH--HHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4567888888 4678999999999998444 222 2222 5556655443221 255899999998764
No 189
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=55.67 E-value=41 Score=19.82 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 047502 11 FKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDA 68 (145)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 68 (145)
|-....-++..+|..++.+++...|...... .+..++..+. ..+..+.+..
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~--~~~l~~~~L~-----GKdI~ELIa~ 59 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDD--VLDNFFKSLE-----GKTPHELIAA 59 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHH--HHHHHHHHHc-----CCCHHHHHHH
Confidence 4444455666799999999999999988877 7888887763 2556776664
No 190
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=55.40 E-value=26 Score=21.76 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLI 32 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~ 32 (145)
++..+.......|.++.++||.+++++++-
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy 96 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVY 96 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHH
Confidence 345555666667777777788888888654
No 191
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=52.79 E-value=51 Score=20.03 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCcccHHHHHHHHhhhc-------CCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 57 DGFIDVDEFMDAVHDDS-------GGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 57 ~~~i~~~ef~~~~~~~~-------~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
+|.|+..+|+..++... ........++.+|+.+ =|....+..|+.......
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khl--LGR~p~~~~Ei~~~~~i~ 99 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHL--LGRAPYNQAEISAYSQIL 99 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHH--CSS--SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHH--hCCCCCCHHHHHHHHHHH
Confidence 68899999999988511 1223445666677766 344555566666655554
No 192
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=52.66 E-value=1e+02 Score=23.44 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCC-cccHHHHHHHHhhhcCCCCcHHHHH
Q 047502 5 SQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDG-FIDVDEFMDAVHDDSGGKPKEDYLM 83 (145)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~-~i~~~ef~~~~~~~~~~~~~~~~~~ 83 (145)
+..-.+|..+-..+.+.|+..++..++..+|...... + .+...-++.+.- .+.|..++..+.... .....+.
T Consensus 485 ~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~--e--gi~~F~~~a~s~~gv~yl~v~~~i~sel---~D~d~v~ 557 (612)
T COG5069 485 RSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKE--E--GIRSFGDPAGSVSGVFYLDVLKGIHSEL---VDYDLVT 557 (612)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCc--c--ceeeccCCccccccchHHHHHHHHhhhh---cChhhhh
Confidence 3444667666566677799999999999999987755 2 333334444332 467777777665322 2334555
Q ss_pred HHhhhHh
Q 047502 84 DAFLIFD 90 (145)
Q Consensus 84 ~~f~~~d 90 (145)
..|..++
T Consensus 558 ~~~~~f~ 564 (612)
T COG5069 558 RGFTEFD 564 (612)
T ss_pred hhHHHHH
Confidence 5555554
No 193
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=50.61 E-value=32 Score=17.16 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=19.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 047502 93 KNGLISAMELRRVLINLGCDKCTLEDCRRMIK 124 (145)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 124 (145)
..|.|+.+||..-+.... .-.+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~-~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAY-AARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHc
Confidence 357777777777666654 4445556655543
No 194
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=50.45 E-value=20 Score=25.49 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=41.0
Q ss_pred HhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 85 AFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 85 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
....+|..+.|.+++--..-++.+.. .+.-.+.++.+|.... +..|.+.+..|..++
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 44567888999999888888887775 4444566788888875 567777766666654
No 195
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=50.29 E-value=31 Score=16.88 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 047502 2 EVSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLK 50 (145)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 50 (145)
++...|...|.. +.+++.++...+...+|++.. .|...|.
T Consensus 10 ~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~----~V~~WF~ 49 (57)
T PF00046_consen 10 EQLKVLEEYFQE-----NPYPSKEEREELAKELGLTER----QVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSHH----HHHHHHH
T ss_pred HHHHHHHHHHHH-----hcccccccccccccccccccc----ccccCHH
Confidence 355666666653 667888888888888877654 4555553
No 196
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.74 E-value=38 Score=24.79 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHH
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRS 141 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 141 (145)
....+|..+.+- +|+|+-..-+.-+-. ..+...-+-.+++..|.|.||.++-+||.-
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 456677777544 688887666555554 345667788999999999999999999974
No 197
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=48.29 E-value=55 Score=19.15 Aligned_cols=54 Identities=15% Similarity=0.323 Sum_probs=39.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 10 IFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
.|-.....++..+|.+++..++...|...... .+..++..+. ..+..+.+....
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~--~~~lf~~~L~-----GKdi~eLIa~g~ 59 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDE--KLNKVISELE-----GKDVEELIAAGK 59 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHH--HHHHHHHHHc-----CCCHHHHHHHhH
Confidence 34444455677899999999999999988877 7777777652 256677777544
No 198
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=48.18 E-value=6.2 Score=25.34 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=32.0
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHH
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLED 118 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 118 (145)
..+..+++|..||+.+=-..+-+++..++...| ......-
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~g-IIR~r~K 92 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAG-IIRNRGK 92 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc-hhhhHHH
Confidence 567889999999999989999999999998876 4443333
No 199
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=48.13 E-value=48 Score=18.45 Aligned_cols=65 Identities=18% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
++..++...-.++ -.|.+.+|...+...-.. .........=..+|...+|+||.=||--+.+-.+
T Consensus 8 eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~~-~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 8 EAAEFWKTSFGKR-TIVPWSEFRQALQKVHPI-SSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred HHHHHHHHHCCCC-eEeeHHHHHHHHHHhcCC-CchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 5666666544333 458888888888743333 2223444455567888889999888888777665
No 200
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=47.87 E-value=26 Score=15.41 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=11.2
Q ss_pred CCcccHHHHHHHHHHh
Q 047502 94 NGLISAMELRRVLINL 109 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~ 109 (145)
.|.|+.+++.++....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5777777777776653
No 201
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=47.42 E-value=33 Score=16.39 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 047502 25 SELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAV 69 (145)
Q Consensus 25 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 69 (145)
+|...+|..||+... ++..++..... ...++.++.+...
T Consensus 4 ~d~~~AL~~LGy~~~----e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALISLGYSKA----EAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHTTS-HH----HHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHH----HHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 577888888888776 66666666654 2336667766543
No 202
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=45.93 E-value=62 Score=19.08 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=35.9
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 047502 11 FKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMD 67 (145)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 67 (145)
|-..-..++..+|.+++.++|...|...... .+..++..+.- .+..+.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~--~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDD--RIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHH--HHHHHHHHHcC-----CCHHHHHH
Confidence 4344345666799999999999999888777 77777776631 45666664
No 203
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=45.53 E-value=36 Score=17.73 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCC
Q 047502 94 NGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKD 129 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~ 129 (145)
++.++..++...+...+ ..++++.+...+..++.+
T Consensus 11 ~~P~g~~~l~~~L~~~g-~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRG-EELSEEAVRRRLRAMERD 45 (66)
T ss_pred CCCCCHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHC
Confidence 46677777777777666 666666666666666543
No 204
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=44.70 E-value=73 Score=22.73 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCCCcccHHHHHHhh
Q 047502 94 NGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 143 (145)
.|.||++|=...++..- ....+..++.+++.++ |+-+||..++
T Consensus 300 ~G~itReeal~~v~~~d-~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYD-GEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 56666666666666543 2233455555555554 5566666543
No 205
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=43.84 E-value=40 Score=20.67 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHhccCC
Q 047502 97 ISAMELRRVLINLGCDKCTLEDCRRMIKGVDK 128 (145)
Q Consensus 97 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~ 128 (145)
.|.+++..+...+. ..+|++++..++..++.
T Consensus 27 WT~eDV~~~a~gme-~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGME-YNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCC-CCCCHHHHHHHHHHHhc
Confidence 46777777777666 77888888888887764
No 206
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=43.64 E-value=57 Score=17.96 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=38.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCC--C-cHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCC
Q 047502 18 GDGKLSSSELGEVLICLGCDKS--N-ATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKN 94 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~--~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 94 (145)
-||.|+.+|...+...+..... . ....+..++...-.. ..+...+................+..++.... -|
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~--aD 86 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVAL--AD 86 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hc
Confidence 4888999988877655543322 1 111333333332211 12334444443322111223334444555443 45
Q ss_pred CcccHHHHHH
Q 047502 95 GLISAMELRR 104 (145)
Q Consensus 95 g~i~~~e~~~ 104 (145)
|.++..|..-
T Consensus 87 G~~~~~E~~~ 96 (104)
T cd07177 87 GELDPEERAL 96 (104)
T ss_pred cCCCHHHHHH
Confidence 7777666443
No 207
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=41.90 E-value=37 Score=15.35 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=16.5
Q ss_pred CCHHHHHHHHhccCCCCCCcc-cHHHHHHhh
Q 047502 114 CTLEDCRRMIKGVDKDGDGFV-DFEEFRSML 143 (145)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~g~i-~~~ef~~~l 143 (145)
.++.++...+.......+... +.++++..+
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~ 34 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKSAKTRDELLKLA 34 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 455566666666555444333 666665544
No 208
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=41.82 E-value=74 Score=20.59 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 047502 16 SNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAV 69 (145)
Q Consensus 16 ~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 69 (145)
-|.+|+++ .....+...+++....-. .+..+++.++|-|-|.=+..|.+.+-
T Consensus 45 LD~~GyL~-~~~~eia~~l~~~~~~v~-~~l~~lQ~leP~GigAr~l~EcLllQ 96 (194)
T PF04963_consen 45 LDDDGYLT-ESLEEIAEELGVSEEEVE-KALELLQSLEPAGIGARDLQECLLLQ 96 (194)
T ss_dssp BTTTSTCS-S-HHHHHHHCTS-HHHHH-HHHHHHHTTSS--TTTS-TTHHHHHH
T ss_pred CCCCCccC-CCHHHHHHHhCCCHHHHH-HHHHHHHcCCCCccCcCCHHHHHHHH
Confidence 46788777 334455555665443221 45566777888888888888866553
No 209
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=41.13 E-value=73 Score=18.49 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 047502 22 LSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 22 i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 70 (145)
||.+++.++|...|...... .+..++..+. ..+..+.+....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~--~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPE--RVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHH--HHHHHHHHHc-----CCCHHHHHHHHH
Confidence 99999999999999998887 7888887762 256788777654
No 210
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=40.86 E-value=95 Score=19.78 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCC
Q 047502 4 SSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSN 40 (145)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~ 40 (145)
..++..+|..+-. +++-+..+++-.++..|.+|..-
T Consensus 13 EDEILe~Ya~~~~-~~~D~~l~~Lp~~f~~L~IP~cf 48 (170)
T PF08730_consen 13 EDEILEAYAEYTE-DEQDMTLKDLPNYFEDLQIPKCF 48 (170)
T ss_pred HHHHHHHHHHhcC-CccceeHHHHHHHHHHcCCChHH
Confidence 3455666766633 36669999999999999888654
No 211
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=40.30 E-value=96 Score=19.63 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=28.3
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhcc
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGV 126 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (145)
....+..+++++-.++...++.++|...+.- | ..+|++++......+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV-G-V~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACGV-G-VVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTTT-T-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcCC-C-eEECHHHHHHHHHHH
Confidence 4567788888887666667888888777654 4 677888887766544
No 212
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=38.67 E-value=95 Score=19.14 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHhCCCCCCHHHHHHHH----------hccCCCCCCcccHHHHHHhh
Q 047502 106 LINLGCDKCTLEDCRRMI----------KGVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 106 l~~~~~~~~~~~~~~~~~----------~~~d~~~~g~i~~~ef~~~l 143 (145)
+..+| ..++++++..++ ..+-.+..|.++...|..++
T Consensus 99 ~eklG-i~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 99 FEKLG-ITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHhC-CccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 33445 555666655555 21224568999988887764
No 213
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=38.02 E-value=86 Score=18.41 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 047502 84 DAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVD 127 (145)
Q Consensus 84 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d 127 (145)
.+|-.+...++-..+..++..++...| ....++.+..++..+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG-~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVG-AEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhC-cccCHHHHHHHHHHhc
Confidence 456667778888899999999999998 8888888888888774
No 214
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=37.19 E-value=1.8e+02 Score=23.59 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHHHHhhcCC-CCCcccHHHHHHHHHHh--------CCCCCCc---HHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcC
Q 047502 7 FRQIFKVMDSN-GDGKLSSSELGEVLICL--------GCDKSNA---TKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSG 74 (145)
Q Consensus 7 ~~~~f~~~d~~-~~g~i~~~~~~~~l~~l--------~~~~~~~---~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 74 (145)
...+|...+.. ++..+...+....|-.+ |.-.... +..+.=++..||+..+|.|..-+|...+. ...
T Consensus 422 ~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i-~lc 500 (966)
T KOG4286|consen 422 ALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII-SLC 500 (966)
T ss_pred HHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH-HHh
Confidence 34566666554 34445555555444222 2222111 11345577889999999999888887766 344
Q ss_pred CCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHH-------hC------CCCCCHHHHHHHHhccCCCCCCcccHHHHHH
Q 047502 75 GKPKEDYLMDAFLIFDINKNGLISAMELRRVLIN-------LG------CDKCTLEDCRRMIKGVDKDGDGFVDFEEFRS 141 (145)
Q Consensus 75 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-------~~------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 141 (145)
.....+.++.+|+....++.-.+ ...|...+.+ +| ..++ +.-+..+|... ++...|+...|..
T Consensus 501 k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNv-epsvrsCF~~v--~~~pei~~~~f~d 576 (966)
T KOG4286|consen 501 KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNI-EPSVRSCFQFV--NNKPEIEAALFLD 576 (966)
T ss_pred cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCC-ChHHHHHHHhc--CCCCcchHHHHHH
Confidence 55677788899999876654443 5555555444 22 1222 23456777743 4455677777765
Q ss_pred h
Q 047502 142 M 142 (145)
Q Consensus 142 ~ 142 (145)
-
T Consensus 577 w 577 (966)
T KOG4286|consen 577 W 577 (966)
T ss_pred H
Confidence 3
No 215
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=35.73 E-value=43 Score=14.56 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=3.5
Q ss_pred ccHHHHHHHH
Q 047502 97 ISAMELRRVL 106 (145)
Q Consensus 97 i~~~e~~~~l 106 (145)
||.++|+.++
T Consensus 17 ls~eeir~FL 26 (30)
T PF08671_consen 17 LSKEEIREFL 26 (30)
T ss_dssp --HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3444444443
No 216
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=35.70 E-value=1.4e+02 Score=22.75 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhcc---CC-----CCCCcccHHHHHHhh
Q 047502 83 MDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGV---DK-----DGDGFVDFEEFRSML 143 (145)
Q Consensus 83 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l 143 (145)
..+|..+-...++.++.-.|..+|+..| ...++..++.++..+ +. ...+.++.+-|.+++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstG-LrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTG-LRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcC-CCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 4567777666679999999999999999 777777787777654 21 234568888887664
No 217
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=34.73 E-value=1.1e+02 Score=21.98 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 47 GMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 47 ~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
-++..+|+.+.|+++.--....++ ........+.++.+|.... +.+|.+..-.+-+++...
T Consensus 114 flLaA~ds~~~g~~~vfavkiala-tlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALA-TLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhh-hhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 345567777777776544444433 3333445678899999884 567988888888888875
No 218
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=34.39 E-value=21 Score=18.61 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 047502 19 DGKLSSSELGEVLICLGCDKSNATKEAEGMLKQ 51 (145)
Q Consensus 19 ~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 51 (145)
.|+++.+-+.++++.+.-..... ++++++..
T Consensus 47 rgrvskavlvkmlrkly~~tk~e--~vkrmlhl 77 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNE--EVKRMLHL 77 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--H--HHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchH--HHHHHHHh
Confidence 46677777777777765444444 66666654
No 219
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=34.36 E-value=97 Score=18.40 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=14.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 047502 94 NGLISAMELRRVLINLGCDKCTLEDCRRMIK 124 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 124 (145)
.|.++.+++..-+...+ ..++.+++..++.
T Consensus 26 ~~~~tl~~Ia~~i~~~~-s~~t~~di~~vl~ 55 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEG-STLTRADIEAVLN 55 (124)
T ss_pred cCccCHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 35555555555444433 4445555444443
No 220
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=33.78 E-value=1.4e+02 Score=19.71 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=11.5
Q ss_pred CCcccHHHHHHHHhh
Q 047502 57 DGFIDVDEFMDAVHD 71 (145)
Q Consensus 57 ~~~i~~~ef~~~~~~ 71 (145)
.|.++|..++.-+.+
T Consensus 175 ~geldFn~iL~~Mk~ 189 (246)
T PF10897_consen 175 KGELDFNDILDKMKL 189 (246)
T ss_pred cCCCcHHHHHHHHHH
Confidence 367889988887764
No 221
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=33.34 E-value=76 Score=16.43 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=7.5
Q ss_pred CCcccHHHHHHHH
Q 047502 19 DGKLSSSELGEVL 31 (145)
Q Consensus 19 ~g~i~~~~~~~~l 31 (145)
+|.|..+++...+
T Consensus 21 ~g~v~ls~l~~~~ 33 (74)
T PF12872_consen 21 DGWVSLSQLGQEY 33 (74)
T ss_dssp TSSEEHHHHHHHH
T ss_pred CceEEHHHHHHHH
Confidence 4556666666643
No 222
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=32.72 E-value=51 Score=14.22 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=12.5
Q ss_pred CCCcccHHHHHHHHHH
Q 047502 18 GDGKLSSSELGEVLIC 33 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~ 33 (145)
..|.||.++|...-..
T Consensus 13 ~~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 13 DKGEISEEEYEQKKAR 28 (31)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 3788999999886654
No 223
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=32.51 E-value=83 Score=16.63 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHhhhHhcCCCCcccHHHHHHHHHHhC---CCCCCHHHHHHHHhcc
Q 047502 81 YLMDAFLIFDINKNGLISAMELRRVLINLG---CDKCTLEDCRRMIKGV 126 (145)
Q Consensus 81 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~ 126 (145)
.+..+...++..-.--+-..+++.++..++ +...+++.++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 344444444433333444556666666542 1666777888888765
No 224
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=32.29 E-value=1.2e+02 Score=18.40 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=27.6
Q ss_pred HHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCCC
Q 047502 79 EDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDKD 129 (145)
Q Consensus 79 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~ 129 (145)
++.+..+-+.+....=..-+.++=+.+|+. .+++++|++.++......
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~s---KGLt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLES---KGLTEEEIDEALGRAGSP 50 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHH---CT--HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHc---CCCCHHHHHHHHHhcCCc
Confidence 344555555555444455556666777777 448888888888877544
No 225
>PRK08181 transposase; Validated
Probab=32.05 E-value=94 Score=21.39 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 19 DGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 19 ~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
...|+.+.+...++.|.++.... .+..+.... ..+.++|.+|+..+..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~--~~~~~~~~a---~~~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKT--LWPQFAEQA---DKEGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHH--HHHHHHHHH---hhcCCCHHHHHHHHHH
Confidence 45688888999999998886544 455554433 2355899999998753
No 226
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=31.96 E-value=2e+02 Score=21.11 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 57 DGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 57 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
+..++++.++.... ........+..+.+....+.+++|.....++.+++...
T Consensus 72 ~~~~~l~k~~~~~~-~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKA-TYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred CccchHHHHhhHHh-hhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 34688888877665 44455566778888889999999999999999998874
No 227
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=30.59 E-value=9.8 Score=16.51 Aligned_cols=15 Identities=20% Similarity=-0.035 Sum_probs=7.6
Q ss_pred hhhHhcCCCCcccHH
Q 047502 86 FLIFDINKNGLISAM 100 (145)
Q Consensus 86 f~~~d~~~~g~i~~~ 100 (145)
...-|.+++-.||.+
T Consensus 5 L~qEDTDgn~qITIe 19 (30)
T PF07492_consen 5 LEQEDTDGNFQITIE 19 (30)
T ss_pred hhccccCCCcEEEEe
Confidence 334455555555543
No 228
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=29.33 E-value=1.7e+02 Score=21.44 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=49.9
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCC-------CCcH--HHHHHHHHhhcCCCCCcccHHH--HHHHHhhhcCCCCcH
Q 047502 11 FKVMDSNGDGKLSSSELGEVLICLGCDK-------SNAT--KEAEGMLKQMDYNGDGFIDVDE--FMDAVHDDSGGKPKE 79 (145)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~l~~~~-------~~~~--~~~~~~~~~~d~~~~~~i~~~e--f~~~~~~~~~~~~~~ 79 (145)
|..+|.+.+..++.++-..++..+|++. +..+ +.+..++..++..+.-.|-+++ -..-..+-.++....
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~ 242 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI 242 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccCh
Confidence 4445566688999999999999999875 1111 1344555555544332222211 110001111222344
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
..++.+|+.+---+.+++..-=++..+...
T Consensus 243 ~Di~~~~~~~~d~g~df~~sRi~Re~f~~~ 272 (374)
T TIGR01209 243 NDIKYAARYFFELGRDFFFSRILREAFQSY 272 (374)
T ss_pred HHHHHHHhhccccCchHHHHHHHHHHHHHH
Confidence 555566665543444555444444444443
No 229
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=29.32 E-value=21 Score=19.54 Aligned_cols=15 Identities=0% Similarity=0.166 Sum_probs=5.1
Q ss_pred CCCcccHHHHHHHHh
Q 047502 56 GDGFIDVDEFMDAVH 70 (145)
Q Consensus 56 ~~~~i~~~ef~~~~~ 70 (145)
..+.++..+-...+.
T Consensus 50 ~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 50 PNKYLTKTDARKLIK 64 (86)
T ss_dssp TTS---HHHHHHHTT
T ss_pred CCCcccHHHHHHHcc
Confidence 334444444444433
No 230
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=28.98 E-value=33 Score=19.19 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.5
Q ss_pred hcCCCCcccHHHHHHH
Q 047502 90 DINKNGLISAMELRRV 105 (145)
Q Consensus 90 d~~~~g~i~~~e~~~~ 105 (145)
|.++.|+||..-++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 4567899999887775
No 231
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=28.73 E-value=1.3e+02 Score=17.60 Aligned_cols=41 Identities=15% Similarity=0.393 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 047502 21 KLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDA 68 (145)
Q Consensus 21 ~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 68 (145)
.||.+++..+|...|...... .+..++..+. .++..+.+.-
T Consensus 16 ~it~e~I~~IL~AAGveVee~--~~k~~v~aL~-----GkdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEA--RVKALVAALE-----DVNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHH--HHHHHHHHHc-----CCCHHHHHHh
Confidence 799999999999999998877 7888877662 2666777654
No 232
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=28.41 E-value=71 Score=21.02 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=20.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh
Q 047502 10 IFKVMDSNGDGKLSSSELGEVLICL 34 (145)
Q Consensus 10 ~f~~~d~~~~g~i~~~~~~~~l~~l 34 (145)
+...+|.|++|.++.+++..+...+
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3456789999999999999987654
No 233
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=28.41 E-value=1.7e+02 Score=21.23 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=52.2
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCC---------CCcHHHHHHHHHhhcCCCCCcccHHHHHHH--HhhhcCCCCcH
Q 047502 11 FKVMDSNGDGKLSSSELGEVLICLGCDK---------SNATKEAEGMLKQMDYNGDGFIDVDEFMDA--VHDDSGGKPKE 79 (145)
Q Consensus 11 f~~~d~~~~g~i~~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~--~~~~~~~~~~~ 79 (145)
|...+.+.++.++.++=.+++...|++. +...+++..++..++.++.-.|-+++=-.. ..+-.++....
T Consensus 171 FDire~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keGREGVV~Kdpdm~~~plKYtTsyan~ 250 (382)
T COG1423 171 FDIREKNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEGREGVVMKDPDMRVPPLKYTTSYANI 250 (382)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcCCcceEecCcccccCcceeecccccH
Confidence 4444567788899999999999888763 111137888888887765422222210000 00111222334
Q ss_pred HHHHHHhhhHhcCCCCcccHHHHHHHHHH
Q 047502 80 DYLMDAFLIFDINKNGLISAMELRRVLIN 108 (145)
Q Consensus 80 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 108 (145)
..++.+|+.+-.-+.++++..-++..++.
T Consensus 251 ~Dik~afr~~~elgr~f~~sRiiRe~F~~ 279 (382)
T COG1423 251 EDIKYAFRFFFELGRDFFFSRIIREGFQS 279 (382)
T ss_pred HHHHHHHhhhhhcCchHHHHHHHHHHHHH
Confidence 45555666554444455444444444333
No 234
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.14 E-value=17 Score=23.37 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=26.5
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
..+.++.+|..||+..=-..+-+++..++.+-+
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~ 83 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDG 83 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCcc
Confidence 556788899999888878888888888887755
No 235
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=28.13 E-value=52 Score=18.98 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=11.4
Q ss_pred CCCcccHHHHHHHHHHhC
Q 047502 93 KNGLISAMELRRVLINLG 110 (145)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~ 110 (145)
.+|.|++++|...|+.+.
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 369999999999999974
No 236
>cd00236 FinO_conjug_rep FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which encodes the proteins responsible for conjugative transfer of this plasmid from host to recipient Escherichia coli cells; antisense RNA, FinP is thought to interact with traJ mRNA to occlude its ribosome binding site, blocking traJ translation and thereby inhibiting transcription of the tra operon; FinO protects FinP against degradation by binding to FinP and sterically blocking the cellular endonuclease RNase E; FinO also also binds to the complementary stem-loop structures in traJ mRNA and promotes duplex formation between FinP and traJ RNA in vitro; this domain contains two independent RNA binding regions
Probab=28.12 E-value=1.6e+02 Score=18.38 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCC--CCcccHHHHHHHH
Q 047502 45 AEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINK--NGLISAMELRRVL 106 (145)
Q Consensus 45 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~--~g~i~~~e~~~~l 106 (145)
.++|+..+..+.+..++..++..++.....+..-...+..-=..+|.+| -|.||.++-..+.
T Consensus 64 ~~di~~dl~~~~~~~lsk~~Lr~AL~~~t~s~rYL~~~~~Ga~R~DL~G~p~G~Vt~ee~~~Aa 127 (146)
T cd00236 64 KDGILQDVAQHPNIPLTHEELRCAVKAITRRESYLQAMVAGAPRYDLEGYVAGHISQEAEVYAA 127 (146)
T ss_pred HHHHHHHHHhCccCCCCHHHHHHHHHHHhCCHHHHHHHhCCCceeCCCCCCCCeeCHHHHHHHH
Confidence 3444444433334456666666666544333222223333333445443 3666665544443
No 237
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=28.10 E-value=78 Score=16.64 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=19.8
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHhhcCC
Q 047502 28 GEVLICLGCDKSNATKEAEGMLKQMDYN 55 (145)
Q Consensus 28 ~~~l~~l~~~~~~~~~~~~~~~~~~d~~ 55 (145)
...++.+|+....-.+.+..++..+|.|
T Consensus 15 ~dam~~lG~~~~~v~~vl~~LL~lY~~n 42 (65)
T PF10440_consen 15 LDAMRQLGFSKKQVRPVLKNLLKLYDGN 42 (65)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 4556778887665555788888888643
No 238
>PF03586 Herpes_UL36: Herpesvirus UL36 tegument protein; InterPro: IPR005210 The UL36 open reading frame (ORF) encodes the largest Human herpesvirus 1 (HHV-1) protein, a 270 kDa polypeptide designated VP1/2, which is also a component of the virion tegument. A null mutation in the UL36 gene of herpes simplex virus type 1 results in accumulation of unenveloped DNA-filled capsids in the cytoplasm of infected cells []. The region which defines these sequences only covers a small central part of this large protein.; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity
Probab=28.00 E-value=2e+02 Score=19.70 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=18.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhh
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHD 71 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 71 (145)
....|+... .-++|.++|.+++..+..
T Consensus 122 I~~~iL~~A-~a~~G~idy~~~V~~l~~ 148 (253)
T PF03586_consen 122 IAEGILEHA-AAGGGNIDYYDAVGRLSG 148 (253)
T ss_pred HHHHHHHHH-HccCCCCcHHHHHHHHHH
Confidence 334455555 456788999998887764
No 239
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=27.86 E-value=1.1e+02 Score=16.59 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHhccCCC-CCCcccHHHHHHhh
Q 047502 99 AMELRRVLINLGCDKCTLEDCRRMIKGVDKD-GDGFVDFEEFRSML 143 (145)
Q Consensus 99 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 143 (145)
.+++...+.. ...+.+.+...+...+.. --|.++.++|++.|
T Consensus 44 i~~le~~L~G---~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALIG---CPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHTT---CBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 4555555533 456667777777766443 23567777776653
No 240
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.22 E-value=2.2e+02 Score=22.58 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhhhcC-------CCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHH
Q 047502 44 EAEGMLKQMDYNGDGFIDVDEFMDAVHDDSG-------GKPKEDYLMDAFLIFDINKNGLISAMELRRVLIN 108 (145)
Q Consensus 44 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~-------~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 108 (145)
-++-++..+|. .+|.++-+++...+..... ..+..+....++...|.+..|+++..++..++..
T Consensus 19 ~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 19 KLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred HHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 35555555554 5555665555555443111 1112233444566666666666666666666554
No 241
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=27.19 E-value=1e+02 Score=21.24 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=5.0
Q ss_pred cccHHHHHHHHHH
Q 047502 96 LISAMELRRVLIN 108 (145)
Q Consensus 96 ~i~~~e~~~~l~~ 108 (145)
..+..+|+..|..
T Consensus 118 ~~~~~~Fk~~L~~ 130 (265)
T PF09412_consen 118 PSDEAEFKKQLKN 130 (265)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3344444444443
No 242
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=27.09 E-value=67 Score=23.95 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLIC 33 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~ 33 (145)
+...+..+| .+....++..+.+||.+.+..
T Consensus 287 ~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~ 316 (445)
T PF13608_consen 287 EEDEIEHLY-MLCKKHGKLPTEEEFLEYVEE 316 (445)
T ss_pred HHHHHHHHH-HHHHHhCCCCCHHHHHHHHHh
Confidence 344555666 555556788889999998873
No 243
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=27.01 E-value=1.7e+02 Score=19.50 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=30.4
Q ss_pred cCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHhccCC
Q 047502 91 INKNGLISAMELRRVLINLGCDKCTLEDCRRMIKGVDK 128 (145)
Q Consensus 91 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~ 128 (145)
.|..|+...+++...++..+ ..++.+.+..+...-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~-~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAG-RWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhc-cCCCHHHHHHHHhcCCC
Confidence 57889999999999999987 88888888877765543
No 244
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.95 E-value=1.4e+02 Score=17.45 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCCCCH--HHH--HHHHhccCCCCCCcccHHHHHHhhc
Q 047502 101 ELRRVLINLGCDKCTL--EDC--RRMIKGVDKDGDGFVDFEEFRSMLS 144 (145)
Q Consensus 101 e~~~~l~~~~~~~~~~--~~~--~~~~~~~d~~~~g~i~~~ef~~~l~ 144 (145)
.|-.+++.+|+.+.++ .++ ..++++.. .|.|+-+|-...|.
T Consensus 77 kld~vlramgy~p~~e~~~~i~~~~i~~qle---~Gei~peeA~~~L~ 121 (122)
T COG3877 77 KLDEVLRAMGYNPDSENSVNIGKKKIIDQLE---KGEISPEEAIKMLN 121 (122)
T ss_pred HHHHHHHHcCCCCCCCChhhhhHHHHHHHHH---cCCCCHHHHHHHhc
Confidence 4555666665322221 111 23555553 46677777666654
No 245
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=26.89 E-value=49 Score=16.32 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=12.8
Q ss_pred HhhhHhcCCCCcccHHHHHHHHH
Q 047502 85 AFLIFDINKNGLISAMELRRVLI 107 (145)
Q Consensus 85 ~f~~~d~~~~g~i~~~e~~~~l~ 107 (145)
+|..+...|++.+|..|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 34444444557777777666555
No 246
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=26.32 E-value=1.4e+02 Score=17.73 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=12.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCc
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNA 41 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~ 41 (145)
.+..|-.+-++.+|+..|.+.+-+
T Consensus 50 ~nWeVlaEpIQTvmRr~g~~~pYE 73 (115)
T PF08328_consen 50 ENWEVLAEPIQTVMRRYGIPNPYE 73 (115)
T ss_dssp T-GGGGHHHHHHHHHHTT-SSHHH
T ss_pred HCHHHHHHHHHHHHHHcCCCCHHH
Confidence 344455555666666666555544
No 247
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.22 E-value=73 Score=13.97 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHhCCCCCCc
Q 047502 21 KLSSSELGEVLICLGCDKSNA 41 (145)
Q Consensus 21 ~i~~~~~~~~l~~l~~~~~~~ 41 (145)
.++.++++..++..|++.+-.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~ 23 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGT 23 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCC
Confidence 467888999999998886644
No 248
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=26.02 E-value=1.5e+02 Score=21.02 Aligned_cols=67 Identities=19% Similarity=0.007 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhc
Q 047502 23 SSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDI 91 (145)
Q Consensus 23 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~ 91 (145)
+.++=.+.....+...... .+...+...|++++-.+.=.-|..++...+.....+..++..|..|-.
T Consensus 61 t~~e~~er~~~~k~e~~~~--~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~ 127 (335)
T KOG0113|consen 61 TPEEPLERGRREKTEKIPH--KLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGP 127 (335)
T ss_pred chhhHHHhhhhhhhhhhHH--HHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCc
Confidence 3344444444444444444 566677778888876666577777766566666778888888888743
No 249
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.70 E-value=1.2e+02 Score=16.25 Aligned_cols=8 Identities=13% Similarity=0.298 Sum_probs=3.2
Q ss_pred ccHHHHHH
Q 047502 60 IDVDEFMD 67 (145)
Q Consensus 60 i~~~ef~~ 67 (145)
|+..|...
T Consensus 29 Vs~~EI~~ 36 (71)
T PF04282_consen 29 VSASEISA 36 (71)
T ss_pred CCHHHHHH
Confidence 44444333
No 250
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=25.33 E-value=1.9e+02 Score=20.02 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=7.8
Q ss_pred CCcccHHHHHHHHh
Q 047502 57 DGFIDVDEFMDAVH 70 (145)
Q Consensus 57 ~~~i~~~ef~~~~~ 70 (145)
.|+++..+....+.
T Consensus 68 gGRv~~~dL~~~Ln 81 (272)
T PF09743_consen 68 GGRVNLVDLAQALN 81 (272)
T ss_pred CCceEHHHHHHhcC
Confidence 36666666555443
No 251
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.96 E-value=2.1e+02 Score=18.76 Aligned_cols=20 Identities=5% Similarity=0.263 Sum_probs=10.2
Q ss_pred hhcCCCCCcccHHHHHHHHh
Q 047502 51 QMDYNGDGFIDVDEFMDAVH 70 (145)
Q Consensus 51 ~~d~~~~~~i~~~ef~~~~~ 70 (145)
.+..|..|.|+....+.+..
T Consensus 127 af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 127 AFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred HHhcCCCCCcCHHHHHHHHh
Confidence 34445555555555555444
No 252
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=24.72 E-value=1.6e+02 Score=21.16 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=18.4
Q ss_pred hcCCCCCcccHHHHHHHHHHhCCCC
Q 047502 14 MDSNGDGKLSSSELGEVLICLGCDK 38 (145)
Q Consensus 14 ~d~~~~g~i~~~~~~~~l~~l~~~~ 38 (145)
++.++.+.++..+...++..++++.
T Consensus 134 ~~~~~~~~lp~~eR~~lLe~lg~~~ 158 (342)
T cd07894 134 RKKNTGRPLPVEERRELLEKYGLPT 158 (342)
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCCC
Confidence 3344456788999999999987753
No 253
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=24.63 E-value=2.1e+02 Score=20.61 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHhhcCCCC--CcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCC
Q 047502 37 DKSNATKEAEGMLKQMDYNGD--GFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLGCDKC 114 (145)
Q Consensus 37 ~~~~~~~~~~~~~~~~d~~~~--~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~ 114 (145)
+.+...++++.++..+-.|.| --+--++|...+.. .........+.-+-+.+...=+|.+=..|+..-++...
T Consensus 35 d~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~-l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~n---- 109 (357)
T PLN02508 35 NKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADK-IQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTN---- 109 (357)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhccchhh-CCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCC----
Confidence 333333478888887755433 22334455554331 11111222233333344556678888887776665532
Q ss_pred CHHHHHHHHhccCCCC
Q 047502 115 TLEDCRRMIKGVDKDG 130 (145)
Q Consensus 115 ~~~~~~~~~~~~d~~~ 130 (145)
..+.++|..+..|.
T Consensus 110 --P~lae~F~lMaRDE 123 (357)
T PLN02508 110 --PVVAEIFTLMSRDE 123 (357)
T ss_pred --hHHHHHHHHhCchh
Confidence 45667777776654
No 254
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=24.60 E-value=14 Score=23.84 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.3
Q ss_pred cHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 78 KEDYLMDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 78 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
..+.++.+|..||+..=-..+-+++..++.+-+
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch
Confidence 556788899999988777788888888887754
No 255
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.37 E-value=1.4e+02 Score=16.58 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=2.7
Q ss_pred CCCCHHH
Q 047502 112 DKCTLED 118 (145)
Q Consensus 112 ~~~~~~~ 118 (145)
..+++++
T Consensus 15 L~l~eee 21 (93)
T TIGR00135 15 LELSEEE 21 (93)
T ss_pred CCCCHHH
Confidence 3334333
No 256
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=24.34 E-value=1.4e+02 Score=18.62 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=20.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM 52 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 52 (145)
..|.|+.+.+..+...+|++.+ .+..+...+
T Consensus 35 ~~G~Ip~e~~~~iA~~l~v~~~----~V~~vatFY 65 (156)
T PRK05988 35 EFGYVPEDAVPVIAEALNLSRA----EVHGVITFY 65 (156)
T ss_pred HcCCCCHHHHHHHHHHhCCCHH----HHHHHHHHh
Confidence 3577888888877777777766 444444433
No 257
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=24.03 E-value=1e+02 Score=14.78 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLK 50 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 50 (145)
++..|.+.|.. +.+.+.++...+...+|++.. .|...|.
T Consensus 11 ~~~~L~~~f~~-----~~~P~~~~~~~la~~~~l~~~----qV~~WF~ 49 (56)
T smart00389 11 QLEELEKEFQK-----NPYPSREEREELAAKLGLSER----QVKVWFQ 49 (56)
T ss_pred HHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHH----HHHHhHH
Confidence 44455555532 226777777777777776633 4555543
No 258
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.68 E-value=1.1e+02 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=29.9
Q ss_pred CcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 77 PKEDYLMDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 77 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
.+.+....++..+|++..|.|...++..+++.+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 3456778899999999999999999999999985
No 259
>COG5562 Phage envelope protein [General function prediction only]
Probab=23.38 E-value=42 Score=20.45 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=12.2
Q ss_pred ccCCCCCCcccHHHHHHhh
Q 047502 125 GVDKDGDGFVDFEEFRSML 143 (145)
Q Consensus 125 ~~d~~~~g~i~~~ef~~~l 143 (145)
...++..|..+|++|+..+
T Consensus 80 al~~~qsGqttF~ef~~~l 98 (137)
T COG5562 80 ALRRHQSGQTTFEEFCSAL 98 (137)
T ss_pred HHHHHhcCCccHHHHHHHH
Confidence 3344557777777777655
No 260
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=23.29 E-value=1e+02 Score=14.66 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHhCCCCCCHHHH
Q 047502 98 SAMELRRVLINLGCDKCTLEDC 119 (145)
Q Consensus 98 ~~~e~~~~l~~~~~~~~~~~~~ 119 (145)
+.+++..+.+..| ...+.+++
T Consensus 28 ~~~e~~~lA~~~G-y~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAG-YDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcC-CCCCHHHh
Confidence 5667777777777 67776654
No 261
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.16 E-value=88 Score=13.82 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHhCCCCCCc
Q 047502 21 KLSSSELGEVLICLGCDKSNA 41 (145)
Q Consensus 21 ~i~~~~~~~~l~~l~~~~~~~ 41 (145)
.++..+++..++..|++.+-.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~ 23 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGK 23 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSS
T ss_pred cCcHHHHHHHHHHCCCCCCCC
Confidence 367788899999888886654
No 262
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.83 E-value=1.3e+02 Score=15.50 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=11.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHH
Q 047502 94 NGLISAMELRRVLINLGCDKCTLEDCRR 121 (145)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 121 (145)
+|.++..++..++..+.....+.+|+..
T Consensus 29 ~g~~s~~qiaAfL~al~~kget~~Eiag 56 (66)
T PF02885_consen 29 DGEVSDAQIAAFLMALRMKGETPEEIAG 56 (66)
T ss_dssp TTSS-HHHHHHHHHHHHHH---HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3455555555555544222344444433
No 263
>PHA02335 hypothetical protein
Probab=22.65 E-value=1.7e+02 Score=17.07 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCC--cccHHHHHHHHHHh
Q 047502 55 NGDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNG--LISAMELRRVLINL 109 (145)
Q Consensus 55 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g--~i~~~e~~~~l~~~ 109 (145)
++...|++++|..-+. +...++..|+.|.+.|+= .+=...+.-+....
T Consensus 20 ~np~sVt~ddf~~Dlk-------Ri~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF 69 (118)
T PHA02335 20 NNPQSVTYDDFEEDLK-------RFKYIKRLFKRYLNTGELKTHLILNHIIILYNVF 69 (118)
T ss_pred CCcccccHHHHHHHHH-------HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Confidence 3346799999998876 445778888888766544 33334444444443
No 264
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=22.63 E-value=2e+02 Score=18.48 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=8.9
Q ss_pred CCCCcccHHHHHHHHHHhCC
Q 047502 17 NGDGKLSSSELGEVLICLGC 36 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~l~~ 36 (145)
+|||++..-=+.-+|...|+
T Consensus 127 DGNGRt~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 127 NGNGRHARLATDLLLEQQGY 146 (186)
T ss_pred CCCcHHHHHHHHHHHHHCCC
Confidence 44554444444444444443
No 265
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=22.23 E-value=1.8e+02 Score=17.03 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=6.2
Q ss_pred cccHHHHHHHHH
Q 047502 21 KLSSSELGEVLI 32 (145)
Q Consensus 21 ~i~~~~~~~~l~ 32 (145)
.|+.++...+|.
T Consensus 11 ~lt~sEa~~iL~ 22 (112)
T PRK14981 11 YITIAEAKEILS 22 (112)
T ss_pred cccHHHHHHHHH
Confidence 455555555554
No 266
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.20 E-value=72 Score=14.92 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=14.5
Q ss_pred hcCCCCcccHHHHHHHHHHh
Q 047502 90 DINKNGLISAMELRRVLINL 109 (145)
Q Consensus 90 d~~~~g~i~~~e~~~~l~~~ 109 (145)
+....|.++.++++.++..-
T Consensus 7 ~g~~~GP~s~~el~~l~~~g 26 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISSG 26 (45)
T ss_pred CCeEECCcCHHHHHHHHHcC
Confidence 34456888888888887764
No 267
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.13 E-value=2.2e+02 Score=21.28 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHhhhHhcCCCCcccHHHHHHHHHHhCCCCC-CHHHHHHHHhccCCCCCC--cccHHHH
Q 047502 82 LMDAFLIFDINKNGLISAMELRRVLINLGCDKC-TLEDCRRMIKGVDKDGDG--FVDFEEF 139 (145)
Q Consensus 82 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~d~~~~g--~i~~~ef 139 (145)
++.+...+=+. ..++|...|..-|-.++ ... -.+..++++...+.+... .|+|+++
T Consensus 303 Lr~AM~~~~K~-KNf~tAa~FArRLLel~-p~~~~a~qArKil~~~e~~~tDa~~i~yD~~ 361 (422)
T PF06957_consen 303 LRSAMSQAFKL-KNFITAASFARRLLELN-PSPEVAEQARKILQACERNPTDAHEIDYDER 361 (422)
T ss_dssp HHHHHHHCCCT-TBHHHHHHHHHHHHCT---SCHHHHHHHHHHHHHCCS--BSS--S--TT
T ss_pred HHHHHHHHHHh-ccHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCceecCCCCC
Confidence 44444444333 47889988888877775 322 234578888888876543 4777764
No 268
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.02 E-value=1e+02 Score=19.90 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=25.1
Q ss_pred CcccHHHHHHHHhhhcC--CCCcHHHHHHHhhhHhcCCCCcccHHHHHHHH
Q 047502 58 GFIDVDEFMDAVHDDSG--GKPKEDYLMDAFLIFDINKNGLISAMELRRVL 106 (145)
Q Consensus 58 ~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 106 (145)
-.++|++...+|..... ...-.-...+-.+-+|+-.+|.++++|+...-
T Consensus 19 TsLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~rae 69 (230)
T COG3820 19 TSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIARAE 69 (230)
T ss_pred ccccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHhhh
Confidence 34667666666542100 00011233444556666677777777766553
No 269
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=21.98 E-value=1.3e+02 Score=18.51 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhh
Q 047502 7 FRQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQM 52 (145)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 52 (145)
+-.+.+... +.-|.|+.+.+..+...++++.+ .+..+...+
T Consensus 18 li~~L~~vQ-~~~G~i~~~~~~~iA~~l~~~~~----~v~~v~tFY 58 (148)
T TIGR01958 18 IMPALMIAQ-EQKGWVTPEAIAAVAEMLGIPPV----WVYEVATFY 58 (148)
T ss_pred HHHHHHHHH-HHhCCCCHHHHHHHHHHhCcCHH----HHHHHHhHH
Confidence 334444442 34678999999999999988877 444544433
No 270
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.92 E-value=2.3e+02 Score=18.10 Aligned_cols=22 Identities=5% Similarity=0.253 Sum_probs=15.1
Q ss_pred hHhcCCCCcccHHHHHHHHHHh
Q 047502 88 IFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 88 ~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
.|+...+-+||.+++.++++.-
T Consensus 20 LYnT~TSTYVTL~dla~mVk~g 41 (193)
T COG5394 20 LYNTGTSTYVTLEDLAQMVKEG 41 (193)
T ss_pred hcccCCceeeeHHHHHHHHhcC
Confidence 4566667777777777777663
No 271
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=21.78 E-value=1.2e+02 Score=14.86 Aligned_cols=9 Identities=56% Similarity=0.722 Sum_probs=3.4
Q ss_pred ccHHHHHHH
Q 047502 60 IDVDEFMDA 68 (145)
Q Consensus 60 i~~~ef~~~ 68 (145)
++..+|...
T Consensus 11 itv~~~rd~ 19 (50)
T PF09107_consen 11 ITVAEFRDL 19 (50)
T ss_dssp BEHHHHHHH
T ss_pred CcHHHHHHH
Confidence 333333333
No 272
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.71 E-value=1.5e+02 Score=16.11 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 57 DGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 57 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
.|.++-+++-..-+ .......++.++..... .|.....-|..+++...
T Consensus 27 ~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~ 74 (82)
T cd08330 27 KKVITQEQYSEVRA----EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEE 74 (82)
T ss_pred CCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhC
Confidence 45666666655543 22445556666665533 46666666666666543
No 273
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=21.52 E-value=1.4e+02 Score=18.58 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=20.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 047502 18 GDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQ 51 (145)
Q Consensus 18 ~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 51 (145)
.-|+|+.+.+..+...++++.+ .+..+...
T Consensus 34 ~~g~ip~~~~~~iA~~l~v~~~----~v~~v~tF 63 (154)
T PRK07539 34 QRGWVPDEAIEAVADYLGMPAI----DVEEVATF 63 (154)
T ss_pred HhCCCCHHHHHHHHHHhCcCHH----HHHHHHHH
Confidence 3677888888888887777766 44444443
No 274
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=20.67 E-value=4.8e+02 Score=21.44 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhh------------hcCC
Q 047502 8 RQIFKVMDSNGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHD------------DSGG 75 (145)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------------~~~~ 75 (145)
.=++..||+..+|.|..-.|+-.+..+....... ....+|..+...+.. ++-..|-.++.- ....
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~lee--k~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLED--KYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHH--HHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 3456889999999999999988887776655555 566888877544332 223333333321 1223
Q ss_pred CCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHhC
Q 047502 76 KPKEDYLMDAFLIFDINKNGLISAMELRRVLINLG 110 (145)
Q Consensus 76 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 110 (145)
.....-++..|.. .|..+.-++..++..++
T Consensus 550 sNvepsvrsCF~~-----v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 550 SNIEPSVRSCFQF-----VNNKPEIEAALFLDWMR 579 (966)
T ss_pred CCCChHHHHHHHh-----cCCCCcchHHHHHHHhc
Confidence 3344566777772 23334444555555544
No 275
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=20.64 E-value=2.4e+02 Score=17.81 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHhCCCC----CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhhhc----CCCCcHHHHHHHhhhHh
Q 047502 21 KLSSSELGEVLICLGCDK----SNATKEAEGMLKQMDYNGDGFIDVDEFMDAVHDDS----GGKPKEDYLMDAFLIFD 90 (145)
Q Consensus 21 ~i~~~~~~~~l~~l~~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~d 90 (145)
.|+..+|..++...+.-. +.. ++.-.|..+--..-+.++|++|..++.... ...+.++.+..+++.+.
T Consensus 33 em~gkn~~KlcKdc~V~DgK~vT~t--dt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 33 EMNGKNWDKLCKDCKVIDGKSVTGT--DTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLA 108 (180)
T ss_pred ccccccHHHHHhhcCcccCCccccc--ccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Confidence 588889999998876532 222 334444444444456799999976655322 33445566777776664
No 276
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=20.58 E-value=2.1e+02 Score=19.65 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHH
Q 047502 3 VSSQFRQIFKVMDSNGDGKLSSSELGE 29 (145)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~~~~~ 29 (145)
|++.+..++..++.+ +|+++..++..
T Consensus 181 EleAv~~IL~~L~~~-egrlse~eLAe 206 (251)
T TIGR02787 181 ELEAVEHIFEELDGN-EGLLVASKIAD 206 (251)
T ss_pred HHHHHHHHHHHhccc-cccccHHHHHH
Confidence 334444444444221 34455444433
No 277
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.30 E-value=1.8e+02 Score=16.25 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHhhhcCCCCcHHHHHHHhhhHhcCCCCcccHHHHHHHHHHh
Q 047502 56 GDGFIDVDEFMDAVHDDSGGKPKEDYLMDAFLIFDINKNGLISAMELRRVLINL 109 (145)
Q Consensus 56 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 109 (145)
++|.++-+++-...+ .+.+.+.++.++...- ..|.--.+-|..++...
T Consensus 26 ~n~~it~E~y~~V~a----~~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVCA----CPTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHHh----CCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHH
Confidence 456777777766654 4455566777766642 23555555566666554
No 278
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=20.17 E-value=89 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCCCcccHHHHH-HHHHHhCCCCCCHHHHHHHHhccCCC
Q 047502 92 NKNGLISAMELR-RVLINLGCDKCTLEDCRRMIKGVDKD 129 (145)
Q Consensus 92 ~~~g~i~~~e~~-~~l~~~~~~~~~~~~~~~~~~~~d~~ 129 (145)
|=||.||..++. .+..-+| ..++-.-+..++..++.+
T Consensus 381 DiDGTITkSD~~Ghv~~miG-kdwth~gVAkLYtdI~rN 418 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIG-KDWTHNGVAKLYTDIDRN 418 (580)
T ss_pred ecCCcEEehhhHHHHHHHhc-cchhhcchhhhhhhhccC
Confidence 457999999999 5555566 788888888888888766
No 279
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=20.16 E-value=2.4e+02 Score=21.56 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCcHHHHHHHHHhhcCCCCCcc
Q 047502 17 NGDGKLSSSELGEVLICLGCDKSNATKEAEGMLKQMDYNGDGFI 60 (145)
Q Consensus 17 ~~~g~i~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~~~i 60 (145)
+..+.++...+..+|+.+|++ .+. +--.++.....++.|.+
T Consensus 46 ~~~~~~~l~~m~~~L~~lg~p-~d~--~~l~iIHVAGTkGKGSt 86 (496)
T KOG2525|consen 46 DNPQGLTLPRMRKLLERLGNP-EDQ--NSLNIIHVAGTKGKGST 86 (496)
T ss_pred CCccccCHHHHHHHHHHhCCh-hhh--hheeEEEEecCCCCcch
Confidence 345567888888888888888 433 34456666677666654
No 280
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=20.05 E-value=1.5e+02 Score=15.19 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHH
Q 047502 97 ISAMELRRVLINLGCDKCTLEDCRRM 122 (145)
Q Consensus 97 i~~~e~~~~l~~~~~~~~~~~~~~~~ 122 (145)
.+.+++..+.+..| ..++.+++...
T Consensus 25 ~~~e~~~~lA~~~G-f~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAG-FEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 34678888888888 88888888764
Done!