Query 047503
Match_columns 920
No_of_seqs 467 out of 3988
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.5E-93 2.1E-97 834.5 48.2 829 2-862 1-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-61 3.2E-66 604.2 47.0 656 170-880 183-906 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.8E-44 1.7E-48 382.5 16.3 284 176-468 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 6E-25 1.3E-29 276.2 15.7 338 530-878 117-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.2E-24 2.6E-29 273.5 16.7 294 577-878 139-439 (968)
6 KOG0444 Cytoskeletal regulator 99.9 4.3E-26 9.4E-31 242.2 -6.8 316 530-858 54-377 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.5E-21 3.2E-26 207.1 1.2 334 531-876 102-448 (873)
8 KOG4194 Membrane glycoprotein 99.8 2.7E-21 5.9E-26 205.1 2.2 314 552-878 78-427 (873)
9 PLN03210 Resistant to P. syrin 99.8 2.5E-19 5.4E-24 225.1 17.3 291 568-879 548-881 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.4E-26 208.9 -8.2 333 532-878 8-350 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 1.5E-20 3.2E-25 191.2 -5.9 299 567-879 103-540 (565)
12 KOG0618 Serine/threonine phosp 99.7 5.4E-19 1.2E-23 198.0 -8.3 72 572-643 62-133 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 2.8E-19 6E-24 182.1 -12.1 265 576-878 43-308 (565)
14 PRK15387 E3 ubiquitin-protein 99.6 7.3E-15 1.6E-19 171.2 11.7 253 580-878 203-456 (788)
15 KOG0618 Serine/threonine phosp 99.5 1.4E-16 3E-21 179.0 -4.9 205 665-878 253-487 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 8.2E-14 1.8E-18 162.4 9.9 242 579-863 223-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 2E-13 4.3E-18 160.5 7.9 243 579-878 179-426 (754)
18 KOG0617 Ras suppressor protein 99.4 1.1E-14 2.4E-19 131.7 -4.0 153 576-734 31-184 (264)
19 PRK04841 transcriptional regul 99.3 1.4E-10 3.1E-15 145.6 26.9 298 172-514 15-333 (903)
20 PRK15370 E3 ubiquitin-protein 99.3 2.3E-12 5E-17 151.6 9.2 202 578-806 220-426 (754)
21 KOG0617 Ras suppressor protein 99.3 2.4E-14 5.2E-19 129.5 -6.2 152 549-709 30-184 (264)
22 cd00116 LRR_RI Leucine-rich re 99.3 6.7E-13 1.4E-17 145.1 0.2 87 571-657 16-118 (319)
23 PRK00411 cdc6 cell division co 99.3 1.7E-09 3.6E-14 121.7 26.5 304 169-493 28-358 (394)
24 cd00116 LRR_RI Leucine-rich re 99.2 4E-12 8.6E-17 139.0 1.2 89 766-854 216-318 (319)
25 TIGR02928 orc1/cdc6 family rep 99.2 7E-09 1.5E-13 115.4 26.7 307 170-494 14-351 (365)
26 KOG4658 Apoptotic ATPase [Sign 99.2 2.4E-11 5.2E-16 145.3 5.8 266 547-847 518-798 (889)
27 TIGR03015 pepcterm_ATPase puta 99.1 6E-09 1.3E-13 110.6 23.0 183 194-389 43-242 (269)
28 KOG4237 Extracellular matrix p 99.1 1.6E-12 3.5E-17 133.2 -4.8 130 551-687 65-199 (498)
29 KOG4237 Extracellular matrix p 99.1 8.2E-12 1.8E-16 128.1 -0.6 122 579-706 68-196 (498)
30 PF01637 Arch_ATPase: Archaeal 99.1 8.1E-10 1.8E-14 114.7 12.3 202 173-384 1-233 (234)
31 KOG2120 SCF ubiquitin ligase, 99.0 1.2E-11 2.7E-16 122.1 -4.4 195 625-846 186-390 (419)
32 TIGR00635 ruvB Holliday juncti 99.0 2.9E-08 6.3E-13 107.3 19.1 282 171-494 4-290 (305)
33 PF05729 NACHT: NACHT domain 99.0 4.7E-09 1E-13 102.4 11.7 147 195-351 1-163 (166)
34 KOG4341 F-box protein containi 98.9 4.9E-11 1.1E-15 123.7 -3.2 296 578-903 138-457 (483)
35 COG2909 MalT ATP-dependent tra 98.9 2.6E-07 5.6E-12 105.3 24.4 298 180-515 24-340 (894)
36 PRK00080 ruvB Holliday junctio 98.9 1.1E-07 2.4E-12 103.5 20.7 282 171-494 25-311 (328)
37 KOG0532 Leucine-rich repeat (L 98.9 1.5E-10 3.3E-15 124.3 -2.9 158 569-736 89-247 (722)
38 KOG1909 Ran GTPase-activating 98.8 7.2E-10 1.6E-14 112.8 -0.6 250 572-855 24-310 (382)
39 KOG3207 Beta-tubulin folding c 98.7 5.4E-09 1.2E-13 109.4 2.3 182 598-807 118-313 (505)
40 PF14580 LRR_9: Leucine-rich r 98.7 1.3E-08 2.8E-13 97.7 4.4 106 576-687 17-124 (175)
41 KOG3207 Beta-tubulin folding c 98.7 2E-09 4.3E-14 112.6 -1.3 212 618-856 115-339 (505)
42 KOG1259 Nischarin, modulator o 98.7 3.3E-09 7.2E-14 105.1 0.1 178 615-807 205-386 (490)
43 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.4E-13 114.0 5.1 107 574-686 112-219 (394)
44 PTZ00112 origin recognition co 98.7 3.5E-06 7.7E-11 97.0 23.5 303 170-494 754-1087(1164)
45 PRK13342 recombination factor 98.6 5.7E-07 1.2E-11 100.9 15.4 176 171-386 12-197 (413)
46 KOG1909 Ran GTPase-activating 98.6 4.2E-09 9E-14 107.3 -2.0 252 595-879 24-310 (382)
47 PF13173 AAA_14: AAA domain 98.6 1.5E-07 3.3E-12 86.9 8.2 123 194-343 2-127 (128)
48 PTZ00202 tuzin; Provisional 98.6 3.8E-05 8.3E-10 82.3 26.7 165 169-351 260-434 (550)
49 COG3899 Predicted ATPase [Gene 98.6 1.7E-06 3.7E-11 104.7 18.9 295 172-491 1-355 (849)
50 KOG0532 Leucine-rich repeat (L 98.6 4E-09 8.8E-14 113.6 -3.3 173 578-785 75-248 (722)
51 PRK06893 DNA replication initi 98.6 1.1E-06 2.3E-11 90.1 14.5 152 194-387 39-205 (229)
52 COG2256 MGS1 ATPase related to 98.5 9.5E-07 2.1E-11 92.5 13.2 172 168-379 27-206 (436)
53 PRK05564 DNA polymerase III su 98.5 5.4E-06 1.2E-10 89.6 18.0 178 171-384 4-189 (313)
54 KOG1259 Nischarin, modulator o 98.5 3.8E-08 8.3E-13 97.7 0.5 126 623-759 283-409 (490)
55 KOG4341 F-box protein containi 98.4 8.5E-09 1.8E-13 107.4 -4.4 300 552-876 138-461 (483)
56 TIGR03420 DnaA_homol_Hda DnaA 98.4 3E-06 6.4E-11 87.3 13.7 171 176-387 22-203 (226)
57 PRK04195 replication factor C 98.4 3.2E-05 7E-10 88.7 22.8 178 171-384 14-201 (482)
58 PF14580 LRR_9: Leucine-rich r 98.4 2.4E-07 5.3E-12 89.0 4.2 109 576-687 40-151 (175)
59 PRK07003 DNA polymerase III su 98.4 3.2E-05 6.8E-10 89.1 21.5 202 171-389 16-225 (830)
60 PF13401 AAA_22: AAA domain; P 98.4 9.3E-07 2E-11 82.3 7.6 115 194-317 4-125 (131)
61 KOG2028 ATPase related to the 98.3 6.4E-06 1.4E-10 84.5 13.4 157 194-379 162-330 (554)
62 PF13191 AAA_16: AAA ATPase do 98.3 1.9E-06 4.1E-11 85.7 9.4 50 172-221 1-51 (185)
63 PRK14961 DNA polymerase III su 98.3 2.5E-05 5.4E-10 86.0 18.4 193 171-381 16-216 (363)
64 PRK12402 replication factor C 98.3 1.1E-05 2.4E-10 88.7 15.8 196 171-382 15-223 (337)
65 cd00009 AAA The AAA+ (ATPases 98.3 5.5E-06 1.2E-10 78.8 11.6 123 174-319 1-131 (151)
66 COG5238 RNA1 Ran GTPase-activa 98.3 6E-08 1.3E-12 95.2 -3.0 249 574-855 26-315 (388)
67 cd01128 rho_factor Transcripti 98.2 1.5E-06 3.3E-11 89.1 6.3 95 194-291 16-114 (249)
68 COG4886 Leucine-rich repeat (L 98.2 7.4E-07 1.6E-11 100.4 4.3 173 551-735 115-289 (394)
69 KOG2120 SCF ubiquitin ligase, 98.2 3.5E-08 7.6E-13 98.1 -5.5 179 677-878 186-374 (419)
70 TIGR02903 spore_lon_C ATP-depe 98.2 0.00039 8.6E-09 81.5 26.8 208 171-388 154-398 (615)
71 PRK14949 DNA polymerase III su 98.2 4.7E-05 1E-09 89.5 18.3 183 171-385 16-221 (944)
72 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 68.8 3.7 56 602-657 2-59 (61)
73 KOG2982 Uncharacterized conser 98.2 8.1E-07 1.8E-11 88.6 2.9 87 573-659 66-158 (418)
74 PLN03025 replication factor C 98.2 3.3E-05 7.2E-10 83.6 15.7 179 171-380 13-195 (319)
75 PRK12323 DNA polymerase III su 98.2 5.1E-05 1.1E-09 86.2 17.2 179 171-385 16-225 (700)
76 PRK09376 rho transcription ter 98.2 1.5E-06 3.4E-11 92.4 4.9 107 181-291 157-267 (416)
77 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 67.8 4.1 59 578-636 1-61 (61)
78 PRK13341 recombination factor 98.2 2.2E-05 4.8E-10 92.7 14.8 171 171-379 28-211 (725)
79 PRK06645 DNA polymerase III su 98.2 6.4E-05 1.4E-09 85.1 17.9 196 171-380 21-224 (507)
80 PLN03150 hypothetical protein; 98.2 2.6E-06 5.6E-11 100.6 7.1 102 579-685 419-524 (623)
81 PRK14957 DNA polymerase III su 98.2 6.2E-05 1.3E-09 85.7 17.8 186 171-389 16-225 (546)
82 PRK14963 DNA polymerase III su 98.2 5.8E-05 1.3E-09 85.8 17.6 201 171-390 14-223 (504)
83 PRK08727 hypothetical protein; 98.2 4.6E-05 9.9E-10 78.3 15.4 147 194-382 41-201 (233)
84 PRK14960 DNA polymerase III su 98.2 6.7E-05 1.4E-09 85.5 17.8 176 171-382 15-216 (702)
85 COG3903 Predicted ATPase [Gene 98.2 2.2E-06 4.9E-11 90.5 5.6 291 193-513 13-314 (414)
86 PRK14962 DNA polymerase III su 98.2 0.00012 2.6E-09 82.7 19.7 187 171-389 14-223 (472)
87 COG1474 CDC6 Cdc6-related prot 98.1 0.00012 2.6E-09 79.7 19.0 209 170-387 16-240 (366)
88 PRK09087 hypothetical protein; 98.1 0.00012 2.7E-09 74.4 17.7 140 194-384 44-194 (226)
89 PRK07940 DNA polymerase III su 98.1 0.00011 2.4E-09 80.8 18.1 174 171-385 5-213 (394)
90 PRK00440 rfc replication facto 98.1 8.8E-05 1.9E-09 80.9 17.1 178 171-381 17-199 (319)
91 TIGR01242 26Sp45 26S proteasom 98.1 3.1E-05 6.8E-10 85.6 13.6 178 168-379 119-328 (364)
92 PRK09112 DNA polymerase III su 98.1 0.00014 3E-09 78.9 17.6 203 170-386 22-241 (351)
93 PF05496 RuvB_N: Holliday junc 98.1 8.8E-05 1.9E-09 73.0 14.1 176 171-387 24-223 (233)
94 PRK08691 DNA polymerase III su 98.0 0.00014 3E-09 83.8 17.6 183 171-389 16-225 (709)
95 PF14516 AAA_35: AAA-like doma 98.0 0.0014 3.1E-08 71.1 24.6 210 171-394 11-248 (331)
96 PRK14087 dnaA chromosomal repl 98.0 0.00052 1.1E-08 77.4 21.9 189 172-387 117-321 (450)
97 PRK14956 DNA polymerase III su 98.0 0.00012 2.5E-09 81.3 16.2 193 171-380 18-217 (484)
98 TIGR02397 dnaX_nterm DNA polym 98.0 0.00022 4.7E-09 79.1 18.7 183 171-386 14-219 (355)
99 TIGR00678 holB DNA polymerase 98.0 0.00016 3.6E-09 71.8 15.9 90 279-381 95-187 (188)
100 PF00308 Bac_DnaA: Bacterial d 98.0 0.00016 3.6E-09 73.2 16.0 183 172-385 10-208 (219)
101 PRK07994 DNA polymerase III su 98.0 0.00016 3.5E-09 83.8 17.7 195 171-384 16-219 (647)
102 PRK05896 DNA polymerase III su 98.0 0.00013 2.9E-09 83.1 16.4 200 171-387 16-223 (605)
103 PRK14951 DNA polymerase III su 98.0 0.00017 3.6E-09 83.4 17.4 197 171-383 16-223 (618)
104 PRK07471 DNA polymerase III su 98.0 0.00028 6.1E-09 77.0 18.3 200 171-386 19-239 (365)
105 PRK14964 DNA polymerase III su 98.0 0.00016 3.4E-09 81.2 16.5 179 171-381 13-213 (491)
106 PRK08084 DNA replication initi 98.0 9.7E-05 2.1E-09 76.0 13.8 171 171-385 23-209 (235)
107 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.6E-11 98.7 -0.8 122 577-706 71-194 (414)
108 PRK14958 DNA polymerase III su 98.0 0.00023 4.9E-09 81.3 17.3 187 171-389 16-225 (509)
109 PHA02544 44 clamp loader, smal 98.0 0.00037 8E-09 75.8 18.4 147 171-349 21-171 (316)
110 PRK14955 DNA polymerase III su 98.0 0.00015 3.4E-09 80.8 15.6 205 171-386 16-230 (397)
111 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 58.0 4.0 39 602-640 2-40 (44)
112 PRK08903 DnaA regulatory inact 97.9 0.00028 6.1E-09 72.6 16.0 172 174-389 22-203 (227)
113 TIGR02880 cbbX_cfxQ probable R 97.9 0.00038 8.3E-09 73.6 16.8 159 172-353 23-210 (284)
114 PRK05642 DNA replication initi 97.9 0.00036 7.9E-09 71.7 16.1 153 194-385 45-208 (234)
115 PRK14969 DNA polymerase III su 97.9 0.0004 8.6E-09 79.9 17.8 187 171-389 16-225 (527)
116 PRK03992 proteasome-activating 97.9 0.00015 3.2E-09 80.6 13.7 175 170-378 130-336 (389)
117 PRK14970 DNA polymerase III su 97.9 0.00049 1.1E-08 76.4 17.8 185 171-387 17-212 (367)
118 CHL00181 cbbX CbbX; Provisiona 97.9 0.00057 1.2E-08 72.3 17.1 160 171-353 23-211 (287)
119 KOG2227 Pre-initiation complex 97.9 0.00056 1.2E-08 73.5 16.6 223 170-402 149-386 (529)
120 TIGR00362 DnaA chromosomal rep 97.8 0.0016 3.6E-08 73.2 21.6 179 173-381 113-306 (405)
121 PRK07764 DNA polymerase III su 97.8 0.00052 1.1E-08 82.4 18.0 181 171-389 15-226 (824)
122 PRK09111 DNA polymerase III su 97.8 0.00056 1.2E-08 79.3 17.7 200 171-385 24-233 (598)
123 TIGR00767 rho transcription te 97.8 2.9E-05 6.4E-10 83.4 6.6 95 195-292 169-267 (415)
124 KOG2543 Origin recognition com 97.8 0.00046 1E-08 72.2 14.8 173 170-350 5-192 (438)
125 PRK14954 DNA polymerase III su 97.8 0.00055 1.2E-08 79.5 17.3 207 171-387 16-231 (620)
126 TIGR02881 spore_V_K stage V sp 97.8 0.00025 5.4E-09 74.5 13.2 158 172-353 7-193 (261)
127 PRK00149 dnaA chromosomal repl 97.8 0.0018 3.8E-08 73.9 21.0 204 173-406 125-349 (450)
128 PRK14952 DNA polymerase III su 97.8 0.00084 1.8E-08 77.5 18.1 205 171-390 13-225 (584)
129 PLN03150 hypothetical protein; 97.8 1.8E-05 3.8E-10 93.6 4.6 111 750-860 419-532 (623)
130 PRK14959 DNA polymerase III su 97.8 0.0009 1.9E-08 76.9 18.0 202 171-390 16-226 (624)
131 PRK07133 DNA polymerase III su 97.8 0.00081 1.7E-08 78.5 17.9 196 171-387 18-222 (725)
132 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4E-10 56.7 2.9 40 578-617 1-40 (44)
133 PRK14950 DNA polymerase III su 97.8 0.00095 2.1E-08 78.3 18.2 197 171-384 16-220 (585)
134 PRK14971 DNA polymerase III su 97.7 0.00094 2E-08 78.1 17.9 182 171-385 17-223 (614)
135 KOG2982 Uncharacterized conser 97.7 1.2E-05 2.7E-10 80.4 1.9 205 696-906 69-287 (418)
136 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.8E-10 93.1 3.5 84 572-656 142-229 (699)
137 KOG0531 Protein phosphatase 1, 97.7 3.7E-06 8.1E-11 94.8 -2.2 244 598-857 69-319 (414)
138 PRK14086 dnaA chromosomal repl 97.7 0.0025 5.4E-08 73.0 20.0 156 194-379 314-482 (617)
139 PRK11331 5-methylcytosine-spec 97.7 0.00018 3.9E-09 78.8 10.3 119 171-303 175-298 (459)
140 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00038 8.3E-09 84.6 13.9 156 171-351 187-363 (852)
141 PRK14953 DNA polymerase III su 97.7 0.0023 4.9E-08 72.8 18.8 178 171-385 16-220 (486)
142 PRK08451 DNA polymerase III su 97.7 0.0021 4.5E-08 73.1 18.3 179 171-385 14-218 (535)
143 PRK06305 DNA polymerase III su 97.6 0.002 4.3E-08 72.8 18.2 184 171-387 17-225 (451)
144 TIGR03689 pup_AAA proteasome A 97.6 0.00071 1.5E-08 76.4 14.0 163 171-352 182-379 (512)
145 KOG1859 Leucine-rich repeat pr 97.6 2E-06 4.3E-11 95.7 -6.1 50 607-657 170-219 (1096)
146 TIGR02639 ClpA ATP-dependent C 97.6 0.00049 1.1E-08 83.1 13.0 156 171-351 182-358 (731)
147 PTZ00454 26S protease regulato 97.5 0.0017 3.8E-08 71.7 15.3 177 170-379 144-351 (398)
148 PF05621 TniB: Bacterial TniB 97.5 0.0035 7.5E-08 65.0 16.3 195 178-381 44-257 (302)
149 PRK14965 DNA polymerase III su 97.5 0.0038 8.2E-08 72.9 18.6 199 171-389 16-225 (576)
150 PRK14948 DNA polymerase III su 97.5 0.0041 8.9E-08 72.8 18.7 200 171-385 16-222 (620)
151 COG0593 DnaA ATPase involved i 97.5 0.011 2.4E-07 64.4 20.5 157 171-354 88-260 (408)
152 PRK14088 dnaA chromosomal repl 97.5 0.0031 6.7E-08 71.2 17.0 178 172-379 107-299 (440)
153 PRK06620 hypothetical protein; 97.5 0.0026 5.6E-08 64.2 14.7 157 170-380 16-184 (214)
154 CHL00176 ftsH cell division pr 97.5 0.0019 4.2E-08 75.6 15.6 175 171-378 183-387 (638)
155 COG1373 Predicted ATPase (AAA+ 97.5 0.0019 4.2E-08 71.7 14.9 137 178-347 24-163 (398)
156 PRK15386 type III secretion pr 97.5 0.00046 1E-08 74.8 9.5 72 574-656 48-121 (426)
157 PRK06647 DNA polymerase III su 97.5 0.0054 1.2E-07 71.0 18.7 196 171-383 16-218 (563)
158 CHL00095 clpC Clp protease ATP 97.4 0.00056 1.2E-08 83.7 10.9 158 171-350 179-353 (821)
159 PRK05707 DNA polymerase III su 97.4 0.0072 1.6E-07 65.1 18.1 96 279-385 105-203 (328)
160 KOG3665 ZYG-1-like serine/thre 97.4 8.7E-05 1.9E-09 87.4 3.5 127 531-659 122-262 (699)
161 PRK12422 chromosomal replicati 97.4 0.0084 1.8E-07 67.5 18.7 155 194-378 141-306 (445)
162 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0017 3.6E-08 79.8 13.5 157 171-351 173-349 (852)
163 COG2255 RuvB Holliday junction 97.3 0.01 2.2E-07 60.0 16.2 173 171-384 26-222 (332)
164 PTZ00361 26 proteosome regulat 97.3 0.0016 3.4E-08 72.6 11.9 156 171-353 183-369 (438)
165 TIGR00763 lon ATP-dependent pr 97.3 0.01 2.2E-07 72.3 20.0 48 170-217 319-370 (775)
166 TIGR01241 FtsH_fam ATP-depende 97.3 0.0048 1E-07 71.3 16.3 176 170-378 54-259 (495)
167 KOG1947 Leucine rich repeat pr 97.3 2.5E-05 5.4E-10 90.7 -2.5 167 697-881 268-441 (482)
168 PRK10536 hypothetical protein; 97.3 0.0028 6.1E-08 64.3 12.3 137 171-319 55-214 (262)
169 PRK15386 type III secretion pr 97.3 0.0012 2.6E-08 71.7 9.9 32 819-853 156-187 (426)
170 PRK10865 protein disaggregatio 97.3 0.0015 3.2E-08 79.9 11.9 45 171-217 178-222 (857)
171 smart00382 AAA ATPases associa 97.3 0.0015 3.2E-08 61.3 9.7 89 195-294 3-92 (148)
172 PRK11034 clpA ATP-dependent Cl 97.3 0.0015 3.3E-08 77.9 11.4 158 171-351 186-362 (758)
173 PRK05563 DNA polymerase III su 97.3 0.01 2.3E-07 68.9 18.0 193 171-381 16-216 (559)
174 KOG4579 Leucine-rich repeat (L 97.2 2.1E-05 4.6E-10 69.7 -3.1 76 581-656 30-109 (177)
175 PRK08116 hypothetical protein; 97.2 0.0019 4.1E-08 67.7 10.6 102 195-318 115-221 (268)
176 PF00004 AAA: ATPase family as 97.2 0.0015 3.3E-08 60.5 8.9 21 197-217 1-21 (132)
177 KOG0989 Replication factor C, 97.2 0.0018 3.9E-08 66.0 9.7 177 171-378 36-223 (346)
178 PRK10787 DNA-binding ATP-depen 97.2 0.005 1.1E-07 74.2 15.3 161 170-351 321-506 (784)
179 PRK07399 DNA polymerase III su 97.2 0.0084 1.8E-07 64.2 15.1 197 171-385 4-221 (314)
180 PRK08118 topology modulation p 97.2 0.00016 3.5E-09 69.8 1.9 34 196-229 3-37 (167)
181 PF04665 Pox_A32: Poxvirus A32 97.1 0.0015 3.3E-08 66.0 8.3 36 195-232 14-49 (241)
182 KOG1859 Leucine-rich repeat pr 97.1 1.3E-05 2.7E-10 89.6 -7.1 114 567-687 176-290 (1096)
183 PF05673 DUF815: Protein of un 97.1 0.033 7.2E-07 56.0 17.2 121 168-321 24-154 (249)
184 TIGR00602 rad24 checkpoint pro 97.1 0.0048 1E-07 71.8 12.4 47 171-217 84-133 (637)
185 KOG4579 Leucine-rich repeat (L 97.0 0.00011 2.4E-09 65.3 -0.7 84 574-657 49-133 (177)
186 PRK08769 DNA polymerase III su 97.0 0.03 6.6E-07 59.8 17.5 95 279-386 112-209 (319)
187 PRK08058 DNA polymerase III su 97.0 0.019 4E-07 62.4 16.2 168 172-350 6-181 (329)
188 KOG0741 AAA+-type ATPase [Post 97.0 0.0099 2.1E-07 64.9 13.5 148 192-375 536-704 (744)
189 TIGR02639 ClpA ATP-dependent C 97.0 0.029 6.4E-07 67.9 18.8 115 171-303 454-578 (731)
190 TIGR02640 gas_vesic_GvpN gas v 97.0 0.042 9.1E-07 57.6 17.7 57 177-242 8-64 (262)
191 PHA00729 NTP-binding motif con 96.9 0.0076 1.7E-07 60.2 10.9 34 182-217 7-40 (226)
192 KOG0733 Nuclear AAA ATPase (VC 96.9 0.019 4E-07 64.0 14.6 156 171-353 190-376 (802)
193 COG0466 Lon ATP-dependent Lon 96.9 0.012 2.6E-07 67.1 13.3 161 170-352 322-509 (782)
194 PRK08181 transposase; Validate 96.9 0.0029 6.2E-08 65.9 8.0 42 185-232 101-142 (269)
195 PRK06871 DNA polymerase III su 96.9 0.065 1.4E-06 57.4 18.2 183 179-382 10-200 (325)
196 COG3267 ExeA Type II secretory 96.9 0.086 1.9E-06 52.9 17.5 181 193-387 50-247 (269)
197 PF13177 DNA_pol3_delta2: DNA 96.8 0.016 3.4E-07 55.7 12.2 136 175-339 1-162 (162)
198 PF10443 RNA12: RNA12 protein; 96.8 0.035 7.6E-07 60.4 15.7 219 176-404 1-297 (431)
199 PRK07952 DNA replication prote 96.8 0.006 1.3E-07 62.5 9.6 52 179-232 84-135 (244)
200 COG1223 Predicted ATPase (AAA+ 96.8 0.016 3.4E-07 57.6 11.7 176 170-379 120-319 (368)
201 PRK07261 topology modulation p 96.8 0.0029 6.4E-08 61.5 6.8 66 196-291 2-68 (171)
202 COG1222 RPT1 ATP-dependent 26S 96.8 0.058 1.2E-06 56.6 16.2 202 171-406 151-392 (406)
203 COG0542 clpA ATP-binding subun 96.8 0.064 1.4E-06 63.1 18.4 118 171-304 491-619 (786)
204 PRK12377 putative replication 96.7 0.0057 1.2E-07 62.8 8.8 37 194-232 101-137 (248)
205 PRK06090 DNA polymerase III su 96.7 0.068 1.5E-06 57.1 16.9 165 178-385 10-201 (319)
206 TIGR01243 CDC48 AAA family ATP 96.7 0.019 4.2E-07 69.7 14.6 176 171-379 453-657 (733)
207 PTZ00494 tuzin-like protein; P 96.7 0.65 1.4E-05 50.5 23.5 172 169-351 369-544 (664)
208 TIGR01243 CDC48 AAA family ATP 96.7 0.016 3.5E-07 70.4 13.8 176 171-379 178-381 (733)
209 PF07693 KAP_NTPase: KAP famil 96.7 0.065 1.4E-06 58.5 17.4 172 177-350 2-262 (325)
210 KOG1644 U2-associated snRNP A' 96.7 0.0021 4.6E-08 61.4 4.7 105 771-879 42-152 (233)
211 TIGR03346 chaperone_ClpB ATP-d 96.7 0.097 2.1E-06 64.6 20.3 132 171-317 565-717 (852)
212 PRK12608 transcription termina 96.6 0.0066 1.4E-07 65.2 8.4 109 178-290 118-230 (380)
213 PRK08939 primosomal protein Dn 96.6 0.0085 1.9E-07 63.9 9.3 117 175-316 135-259 (306)
214 KOG1644 U2-associated snRNP A' 96.6 0.0024 5.2E-08 61.1 4.2 78 579-657 43-123 (233)
215 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0087 1.9E-07 73.0 10.3 48 170-217 565-619 (852)
216 PRK09361 radB DNA repair and r 96.6 0.012 2.6E-07 60.4 9.8 55 183-240 12-66 (225)
217 PRK06526 transposase; Provisio 96.5 0.0048 1E-07 63.9 6.5 23 195-217 99-121 (254)
218 PRK06921 hypothetical protein; 96.5 0.01 2.2E-07 62.0 8.7 37 194-232 117-154 (266)
219 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.014 3.1E-07 60.3 9.7 97 192-290 17-125 (235)
220 TIGR02237 recomb_radB DNA repa 96.5 0.011 2.4E-07 59.8 8.7 95 192-290 10-107 (209)
221 CHL00195 ycf46 Ycf46; Provisio 96.4 0.037 7.9E-07 62.9 13.3 178 171-379 228-429 (489)
222 KOG0735 AAA+-type ATPase [Post 96.4 0.066 1.4E-06 60.9 14.8 186 172-385 409-616 (952)
223 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0025 5.5E-08 68.1 3.8 47 171-217 51-101 (361)
224 PRK07993 DNA polymerase III su 96.4 0.2 4.4E-06 54.2 18.5 178 178-383 9-202 (334)
225 PRK10865 protein disaggregatio 96.4 0.038 8.3E-07 67.8 14.3 47 171-217 568-621 (857)
226 PRK09183 transposase/IS protei 96.4 0.0075 1.6E-07 62.9 7.2 23 195-217 103-125 (259)
227 PF00448 SRP54: SRP54-type pro 96.3 0.014 3E-07 58.0 8.3 90 194-290 1-93 (196)
228 KOG2004 Mitochondrial ATP-depe 96.3 0.059 1.3E-06 61.4 13.9 105 169-292 409-517 (906)
229 PF13207 AAA_17: AAA domain; P 96.3 0.0026 5.5E-08 58.0 2.9 22 196-217 1-22 (121)
230 COG4608 AppF ABC-type oligopep 96.3 0.015 3.3E-07 59.1 8.5 128 194-325 39-177 (268)
231 PF01695 IstB_IS21: IstB-like 96.3 0.0049 1.1E-07 60.2 4.9 37 194-232 47-83 (178)
232 KOG1514 Origin recognition com 96.3 0.17 3.7E-06 57.9 17.1 205 171-388 396-624 (767)
233 cd03214 ABC_Iron-Siderophores_ 96.3 0.025 5.5E-07 55.6 9.8 122 194-321 25-161 (180)
234 KOG0730 AAA+-type ATPase [Post 96.3 0.21 4.5E-06 56.8 17.7 157 171-354 434-618 (693)
235 COG0470 HolB ATPase involved i 96.3 0.03 6.4E-07 61.2 11.3 144 172-340 2-170 (325)
236 PRK06964 DNA polymerase III su 96.3 0.26 5.6E-06 53.3 17.9 92 279-385 131-225 (342)
237 cd01120 RecA-like_NTPases RecA 96.2 0.02 4.3E-07 55.1 8.8 40 196-237 1-40 (165)
238 TIGR02858 spore_III_AA stage I 96.2 0.049 1.1E-06 56.8 12.0 137 179-323 97-234 (270)
239 TIGR02974 phageshock_pspF psp 96.2 0.096 2.1E-06 56.8 14.7 45 173-217 1-45 (329)
240 KOG0744 AAA+-type ATPase [Post 96.2 0.017 3.8E-07 59.2 8.1 81 194-291 177-261 (423)
241 cd01133 F1-ATPase_beta F1 ATP 96.2 0.018 3.9E-07 59.6 8.3 49 195-245 70-120 (274)
242 PRK06696 uridine kinase; Valid 96.2 0.0062 1.3E-07 62.2 4.9 42 176-217 3-45 (223)
243 cd01393 recA_like RecA is a b 96.1 0.041 8.9E-07 56.4 10.8 95 192-290 17-124 (226)
244 KOG1947 Leucine rich repeat pr 96.1 0.00092 2E-08 77.6 -1.7 238 572-857 182-441 (482)
245 PRK06835 DNA replication prote 96.1 0.015 3.2E-07 62.6 7.6 36 195-232 184-219 (329)
246 COG2884 FtsE Predicted ATPase 96.1 0.066 1.4E-06 51.1 10.6 58 268-325 143-204 (223)
247 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.041 8.8E-07 51.8 9.6 102 194-322 26-131 (144)
248 PRK15455 PrkA family serine pr 96.1 0.0062 1.3E-07 68.5 4.6 45 172-216 77-125 (644)
249 KOG0734 AAA+-type ATPase conta 96.1 0.028 6.1E-07 61.6 9.2 47 171-217 304-360 (752)
250 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.041 8.9E-07 55.9 9.9 123 195-321 31-202 (254)
251 KOG2123 Uncharacterized conser 96.0 0.00046 9.9E-09 68.8 -3.9 78 578-657 19-98 (388)
252 PRK11034 clpA ATP-dependent Cl 96.0 0.02 4.3E-07 68.5 8.6 47 171-217 458-511 (758)
253 COG5238 RNA1 Ran GTPase-activa 95.9 0.0082 1.8E-07 60.0 4.3 90 569-658 83-196 (388)
254 CHL00095 clpC Clp protease ATP 95.9 0.053 1.2E-06 66.6 12.3 133 171-318 509-662 (821)
255 COG1484 DnaC DNA replication p 95.9 0.018 3.9E-07 59.7 6.9 74 194-291 105-178 (254)
256 cd01394 radB RadB. The archaea 95.9 0.049 1.1E-06 55.5 10.1 53 183-237 8-60 (218)
257 KOG0731 AAA+-type ATPase conta 95.9 0.18 3.9E-06 59.1 15.3 178 171-381 311-520 (774)
258 TIGR02239 recomb_RAD51 DNA rep 95.9 0.03 6.5E-07 60.1 8.7 67 182-249 84-154 (316)
259 cd03247 ABCC_cytochrome_bd The 95.9 0.041 8.8E-07 54.0 9.1 122 194-322 28-161 (178)
260 cd03222 ABC_RNaseL_inhibitor T 95.8 0.052 1.1E-06 52.8 9.5 23 194-216 25-47 (177)
261 PF13671 AAA_33: AAA domain; P 95.8 0.01 2.3E-07 55.8 4.6 22 196-217 1-22 (143)
262 PRK07667 uridine kinase; Provi 95.8 0.011 2.5E-07 58.7 5.0 38 180-217 3-40 (193)
263 PRK11889 flhF flagellar biosyn 95.8 0.081 1.8E-06 57.3 11.5 89 193-291 240-331 (436)
264 cd00544 CobU Adenosylcobinamid 95.8 0.018 3.9E-07 55.6 6.1 37 197-238 2-38 (169)
265 COG0542 clpA ATP-binding subun 95.8 0.029 6.3E-07 65.9 8.8 158 171-351 170-346 (786)
266 PRK09354 recA recombinase A; P 95.8 0.031 6.6E-07 60.1 8.3 99 183-290 48-148 (349)
267 KOG2228 Origin recognition com 95.8 0.16 3.4E-06 53.0 12.9 175 171-351 24-219 (408)
268 cd00983 recA RecA is a bacter 95.8 0.028 6E-07 59.9 7.8 90 192-290 53-143 (325)
269 cd03238 ABC_UvrA The excision 95.7 0.05 1.1E-06 52.9 8.9 118 194-322 21-153 (176)
270 TIGR01817 nifA Nif-specific re 95.7 0.077 1.7E-06 62.1 12.1 48 170-217 195-242 (534)
271 TIGR02902 spore_lonB ATP-depen 95.7 0.043 9.4E-07 63.6 9.9 45 171-217 65-109 (531)
272 PLN03187 meiotic recombination 95.7 0.052 1.1E-06 58.5 9.8 66 185-251 117-186 (344)
273 PRK05541 adenylylsulfate kinas 95.7 0.014 3E-07 57.2 5.1 37 193-231 6-42 (176)
274 PRK04132 replication factor C 95.7 0.29 6.2E-06 59.1 16.6 154 202-385 574-732 (846)
275 TIGR02238 recomb_DMC1 meiotic 95.7 0.044 9.6E-07 58.6 9.0 67 183-250 85-155 (313)
276 TIGR02012 tigrfam_recA protein 95.7 0.028 6E-07 59.8 7.3 90 192-290 53-143 (321)
277 PF08423 Rad51: Rad51; InterP 95.7 0.024 5.1E-07 59.0 6.6 55 194-249 38-96 (256)
278 PF14532 Sigma54_activ_2: Sigm 95.6 0.021 4.6E-07 53.3 5.7 106 174-318 1-110 (138)
279 PRK10733 hflB ATP-dependent me 95.6 0.13 2.8E-06 61.2 13.6 156 171-353 152-337 (644)
280 PRK04301 radA DNA repair and r 95.6 0.056 1.2E-06 58.5 9.6 65 184-249 92-160 (317)
281 PRK05800 cobU adenosylcobinami 95.6 0.0072 1.6E-07 58.4 2.5 22 196-217 3-24 (170)
282 COG1136 SalX ABC-type antimicr 95.6 0.099 2.2E-06 52.3 10.4 64 262-325 141-210 (226)
283 COG4618 ArpD ABC-type protease 95.6 0.075 1.6E-06 58.4 10.2 22 195-216 363-384 (580)
284 PRK06067 flagellar accessory p 95.6 0.075 1.6E-06 54.8 10.1 103 183-290 14-130 (234)
285 cd01131 PilT Pilus retraction 95.5 0.027 5.8E-07 56.3 6.3 111 195-322 2-113 (198)
286 PRK13695 putative NTPase; Prov 95.5 0.032 7E-07 54.5 6.8 22 196-217 2-23 (174)
287 PRK08699 DNA polymerase III su 95.5 0.22 4.7E-06 53.8 13.6 70 279-350 112-184 (325)
288 COG2607 Predicted ATPase (AAA+ 95.5 0.48 1E-05 47.1 14.4 113 171-318 60-183 (287)
289 KOG0733 Nuclear AAA ATPase (VC 95.5 0.25 5.5E-06 55.4 14.0 157 194-379 545-718 (802)
290 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.17 3.6E-06 47.9 11.0 119 195-319 3-139 (159)
291 PLN03186 DNA repair protein RA 95.4 0.074 1.6E-06 57.5 9.7 67 183-250 112-182 (342)
292 KOG2739 Leucine-rich acidic nu 95.4 0.011 2.4E-07 59.2 3.1 36 622-657 63-101 (260)
293 PRK11608 pspF phage shock prot 95.4 0.057 1.2E-06 58.5 8.8 47 171-217 6-52 (326)
294 cd03216 ABC_Carb_Monos_I This 95.4 0.075 1.6E-06 51.2 8.6 112 195-321 27-145 (163)
295 KOG2035 Replication factor C, 95.3 0.38 8.2E-06 48.8 13.0 215 172-414 14-266 (351)
296 KOG0991 Replication factor C, 95.2 0.036 7.8E-07 54.2 5.7 44 171-216 27-70 (333)
297 PRK09270 nucleoside triphospha 95.2 0.024 5.2E-07 58.2 5.0 26 192-217 31-56 (229)
298 PRK10867 signal recognition pa 95.2 0.14 3E-06 57.1 11.2 24 193-216 99-122 (433)
299 KOG2739 Leucine-rich acidic nu 95.2 0.01 2.2E-07 59.5 1.9 81 575-655 62-151 (260)
300 cd03228 ABCC_MRP_Like The MRP 95.1 0.18 3.8E-06 49.1 10.6 123 194-323 28-160 (171)
301 TIGR03499 FlhF flagellar biosy 95.1 0.07 1.5E-06 56.5 8.3 39 194-232 194-232 (282)
302 TIGR00959 ffh signal recogniti 95.1 0.29 6.2E-06 54.7 13.2 25 193-217 98-122 (428)
303 COG2812 DnaX DNA polymerase II 95.1 0.14 3.1E-06 57.8 10.8 190 171-378 16-213 (515)
304 cd03235 ABC_Metallic_Cations A 95.1 0.23 5E-06 50.3 11.6 24 194-217 25-48 (213)
305 PRK06547 hypothetical protein; 95.0 0.03 6.5E-07 54.3 4.7 33 183-217 6-38 (172)
306 cd03230 ABC_DR_subfamily_A Thi 95.0 0.24 5.2E-06 48.2 11.2 121 194-322 26-159 (173)
307 KOG2123 Uncharacterized conser 95.0 0.0022 4.8E-08 64.1 -3.1 99 550-653 17-123 (388)
308 cd03115 SRP The signal recogni 95.0 0.12 2.7E-06 50.3 9.1 22 196-217 2-23 (173)
309 cd03237 ABC_RNaseL_inhibitor_d 95.0 0.19 4.1E-06 52.1 10.8 128 194-323 25-181 (246)
310 cd03223 ABCD_peroxisomal_ALDP 95.0 0.25 5.5E-06 47.7 11.1 115 194-322 27-152 (166)
311 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.18 3.9E-06 49.7 10.3 22 196-217 1-22 (183)
312 PRK04296 thymidine kinase; Pro 95.0 0.031 6.8E-07 55.4 4.8 113 195-319 3-117 (190)
313 KOG0739 AAA+-type ATPase [Post 95.0 0.5 1.1E-05 48.3 13.0 174 171-378 133-334 (439)
314 KOG0728 26S proteasome regulat 94.9 0.99 2.1E-05 44.9 14.6 151 173-351 148-331 (404)
315 PF13238 AAA_18: AAA domain; P 94.9 0.017 3.7E-07 53.1 2.7 21 197-217 1-21 (129)
316 PRK14974 cell division protein 94.9 0.24 5.3E-06 53.3 11.6 25 193-217 139-163 (336)
317 cd03264 ABC_drug_resistance_li 94.9 0.18 3.9E-06 51.0 10.3 21 196-216 27-47 (211)
318 COG1618 Predicted nucleotide k 94.9 0.019 4E-07 53.1 2.6 24 194-217 5-28 (179)
319 COG0464 SpoVK ATPases of the A 94.9 0.37 8.1E-06 55.9 14.0 156 171-353 242-425 (494)
320 cd03263 ABC_subfamily_A The AB 94.9 0.17 3.7E-06 51.6 10.1 23 194-216 28-50 (220)
321 COG1120 FepC ABC-type cobalami 94.8 0.17 3.6E-06 51.9 9.6 64 261-324 136-205 (258)
322 PF12061 DUF3542: Protein of u 94.8 0.086 1.9E-06 53.8 7.2 78 4-87 296-373 (402)
323 PRK14722 flhF flagellar biosyn 94.8 0.18 3.8E-06 55.0 10.2 89 194-292 137-227 (374)
324 PF00560 LRR_1: Leucine Rich R 94.8 0.014 3E-07 34.8 1.0 17 603-619 2-18 (22)
325 PF00485 PRK: Phosphoribulokin 94.8 0.021 4.5E-07 57.0 2.9 83 196-284 1-87 (194)
326 PLN00020 ribulose bisphosphate 94.8 0.071 1.5E-06 56.9 6.9 26 192-217 146-171 (413)
327 TIGR00150 HI0065_YjeE ATPase, 94.8 0.04 8.6E-07 50.4 4.4 40 178-217 6-45 (133)
328 PRK07132 DNA polymerase III su 94.8 1.4 3.1E-05 46.7 16.8 144 181-350 6-161 (299)
329 PTZ00035 Rad51 protein; Provis 94.7 0.22 4.7E-06 54.1 10.8 68 182-250 106-177 (337)
330 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.3E-07 34.6 1.1 22 625-646 1-22 (22)
331 PTZ00301 uridine kinase; Provi 94.7 0.024 5.2E-07 56.8 3.2 24 194-217 3-26 (210)
332 COG2019 AdkA Archaeal adenylat 94.7 0.055 1.2E-06 50.3 5.2 24 194-217 4-27 (189)
333 cd03246 ABCC_Protease_Secretio 94.7 0.13 2.8E-06 50.1 8.4 23 195-217 29-51 (173)
334 COG1102 Cmk Cytidylate kinase 94.7 0.034 7.3E-07 51.5 3.8 44 196-252 2-45 (179)
335 KOG0924 mRNA splicing factor A 94.7 0.17 3.7E-06 57.1 9.8 130 180-322 361-514 (1042)
336 TIGR00235 udk uridine kinase. 94.7 0.028 6.1E-07 56.7 3.6 25 193-217 5-29 (207)
337 PRK05480 uridine/cytidine kina 94.7 0.026 5.7E-07 57.1 3.4 25 193-217 5-29 (209)
338 PRK08233 hypothetical protein; 94.6 0.026 5.7E-07 55.6 3.3 24 194-217 3-26 (182)
339 PRK00771 signal recognition pa 94.6 0.22 4.7E-06 55.8 10.7 25 193-217 94-118 (437)
340 PRK13531 regulatory ATPase Rav 94.6 0.035 7.5E-07 61.9 4.4 43 171-217 20-62 (498)
341 PF13604 AAA_30: AAA domain; P 94.6 0.23 4.9E-06 49.5 9.8 23 195-217 19-41 (196)
342 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.098 2.1E-06 50.1 6.9 115 195-323 26-145 (157)
343 TIGR02868 CydC thiol reductant 94.5 0.27 5.9E-06 57.7 12.0 23 194-216 361-383 (529)
344 cd03215 ABC_Carb_Monos_II This 94.5 0.32 6.9E-06 47.9 10.6 24 194-217 26-49 (182)
345 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.28 6.1E-06 49.5 10.4 23 194-216 29-51 (213)
346 cd02019 NK Nucleoside/nucleoti 94.5 0.027 5.7E-07 45.2 2.4 22 196-217 1-22 (69)
347 TIGR01425 SRP54_euk signal rec 94.5 0.26 5.7E-06 54.6 10.9 25 193-217 99-123 (429)
348 COG0572 Udk Uridine kinase [Nu 94.5 0.031 6.7E-07 55.3 3.2 25 193-217 7-31 (218)
349 PRK06002 fliI flagellum-specif 94.5 0.11 2.4E-06 57.7 7.8 92 195-290 166-264 (450)
350 TIGR00390 hslU ATP-dependent p 94.5 0.094 2E-06 57.3 7.1 77 171-249 12-104 (441)
351 TIGR01069 mutS2 MutS2 family p 94.5 2.6 5.6E-05 51.2 20.0 23 194-216 322-344 (771)
352 cd01122 GP4d_helicase GP4d_hel 94.4 0.35 7.5E-06 51.1 11.5 53 194-249 30-82 (271)
353 KOG1969 DNA replication checkp 94.3 0.11 2.5E-06 59.3 7.7 73 193-292 325-399 (877)
354 TIGR00064 ftsY signal recognit 94.3 0.26 5.6E-06 51.8 10.0 92 193-291 71-165 (272)
355 PF01583 APS_kinase: Adenylyls 94.3 0.05 1.1E-06 51.2 4.1 36 194-231 2-37 (156)
356 COG0468 RecA RecA/RadA recombi 94.3 0.27 5.8E-06 51.2 9.7 95 189-290 55-151 (279)
357 cd03244 ABCC_MRP_domain2 Domai 94.3 0.3 6.4E-06 49.8 10.2 23 194-216 30-52 (221)
358 PRK06762 hypothetical protein; 94.3 0.035 7.5E-07 53.8 3.1 24 194-217 2-25 (166)
359 COG0465 HflB ATP-dependent Zn 94.3 0.46 1E-05 54.5 12.4 180 168-380 147-356 (596)
360 PRK05201 hslU ATP-dependent pr 94.2 0.098 2.1E-06 57.2 6.7 79 170-250 14-108 (443)
361 TIGR03522 GldA_ABC_ATP gliding 94.2 0.3 6.5E-06 52.4 10.5 24 194-217 28-51 (301)
362 PF00006 ATP-synt_ab: ATP synt 94.2 0.14 3E-06 51.4 7.4 37 195-235 16-52 (215)
363 PRK12723 flagellar biosynthesi 94.2 0.5 1.1E-05 52.0 12.2 89 193-291 173-265 (388)
364 cd03240 ABC_Rad50 The catalyti 94.2 0.061 1.3E-06 54.0 4.8 51 272-322 131-187 (204)
365 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.3 6.5E-06 50.3 10.0 58 183-244 10-67 (237)
366 COG1875 NYN ribonuclease and A 94.1 0.32 6.8E-06 51.4 9.7 38 175-214 228-265 (436)
367 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.1 0.63 1.4E-05 48.1 12.3 24 194-217 29-52 (238)
368 TIGR03375 type_I_sec_LssB type 94.1 0.35 7.5E-06 58.8 11.9 23 194-216 491-513 (694)
369 cd02025 PanK Pantothenate kina 94.1 0.17 3.6E-06 51.4 7.7 22 196-217 1-22 (220)
370 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.29 6.3E-06 50.2 9.7 41 193-235 19-59 (229)
371 PF06309 Torsin: Torsin; Inte 94.0 0.086 1.9E-06 47.2 4.8 47 171-217 25-76 (127)
372 cd01135 V_A-ATPase_B V/A-type 94.0 0.16 3.5E-06 52.5 7.5 97 195-291 70-177 (276)
373 cd03282 ABC_MSH4_euk MutS4 hom 94.0 0.39 8.4E-06 48.1 10.1 47 278-326 106-159 (204)
374 cd03253 ABCC_ATM1_transporter 94.0 0.56 1.2E-05 48.4 11.8 61 263-323 137-201 (236)
375 PRK10463 hydrogenase nickel in 94.0 0.53 1.2E-05 49.3 11.3 93 193-291 103-195 (290)
376 PRK12724 flagellar biosynthesi 94.0 0.24 5.2E-06 54.5 9.0 24 194-217 223-246 (432)
377 COG1116 TauB ABC-type nitrate/ 93.9 0.46 1E-05 47.9 10.2 22 195-216 30-51 (248)
378 PRK15429 formate hydrogenlyase 93.9 0.17 3.6E-06 61.2 8.6 47 171-217 376-422 (686)
379 PRK14721 flhF flagellar biosyn 93.8 0.6 1.3E-05 51.9 11.9 23 194-216 191-213 (420)
380 COG2842 Uncharacterized ATPase 93.8 0.39 8.4E-06 49.6 9.6 115 172-303 73-190 (297)
381 PRK03839 putative kinase; Prov 93.8 0.043 9.4E-07 53.9 2.9 22 196-217 2-23 (180)
382 KOG3347 Predicted nucleotide k 93.8 0.078 1.7E-06 48.3 4.1 105 194-325 7-111 (176)
383 COG4088 Predicted nucleotide k 93.8 0.16 3.4E-06 49.1 6.3 23 195-217 2-24 (261)
384 PRK04328 hypothetical protein; 93.8 0.2 4.4E-06 52.0 7.9 51 183-235 12-62 (249)
385 PRK05022 anaerobic nitric oxid 93.8 0.27 5.8E-06 57.1 9.7 48 170-217 186-233 (509)
386 TIGR01360 aden_kin_iso1 adenyl 93.8 0.046 1E-06 54.1 3.0 25 193-217 2-26 (188)
387 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.18 3.9E-06 52.7 7.5 41 192-234 34-74 (259)
388 cd03236 ABC_RNaseL_inhibitor_d 93.7 0.55 1.2E-05 48.9 10.9 24 194-217 26-49 (255)
389 PTZ00185 ATPase alpha subunit; 93.7 0.3 6.6E-06 54.6 9.2 97 195-291 190-300 (574)
390 PRK14738 gmk guanylate kinase; 93.7 0.056 1.2E-06 54.4 3.4 31 187-217 6-36 (206)
391 TIGR02314 ABC_MetN D-methionin 93.6 0.32 7E-06 52.9 9.4 23 194-216 31-53 (343)
392 cd03283 ABC_MutS-like MutS-lik 93.6 0.33 7.1E-06 48.4 8.8 22 195-216 26-47 (199)
393 cd03213 ABCG_EPDR ABCG transpo 93.6 0.44 9.6E-06 47.4 9.8 24 194-217 35-58 (194)
394 cd01121 Sms Sms (bacterial rad 93.6 0.2 4.4E-06 55.0 7.9 51 182-234 70-120 (372)
395 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.082 1.8E-06 56.2 4.6 47 170-216 60-110 (358)
396 cd03369 ABCC_NFT1 Domain 2 of 93.6 0.92 2E-05 45.7 12.2 23 194-216 34-56 (207)
397 cd03217 ABC_FeS_Assembly ABC-t 93.6 0.19 4.1E-06 50.4 7.1 24 194-217 26-49 (200)
398 PF03205 MobB: Molybdopterin g 93.6 0.072 1.6E-06 49.6 3.7 39 195-234 1-39 (140)
399 PF07728 AAA_5: AAA domain (dy 93.6 0.1 2.3E-06 48.7 4.9 42 197-243 2-43 (139)
400 smart00534 MUTSac ATPase domai 93.6 0.7 1.5E-05 45.5 11.0 53 273-326 69-130 (185)
401 PF00910 RNA_helicase: RNA hel 93.6 0.039 8.4E-07 48.9 1.8 21 197-217 1-21 (107)
402 TIGR03574 selen_PSTK L-seryl-t 93.6 0.32 6.9E-06 50.7 9.0 22 196-217 1-22 (249)
403 cd01129 PulE-GspE PulE/GspE Th 93.5 0.17 3.6E-06 53.0 6.8 109 174-301 62-170 (264)
404 PRK04040 adenylate kinase; Pro 93.5 0.056 1.2E-06 53.3 3.1 24 194-217 2-25 (188)
405 PRK13409 putative ATPase RIL; 93.5 0.4 8.6E-06 56.5 10.5 124 195-323 366-519 (590)
406 cd02024 NRK1 Nicotinamide ribo 93.5 0.046 9.9E-07 53.6 2.3 22 196-217 1-22 (187)
407 PRK00625 shikimate kinase; Pro 93.5 0.052 1.1E-06 52.6 2.7 22 196-217 2-23 (173)
408 COG1428 Deoxynucleoside kinase 93.4 0.056 1.2E-06 52.7 2.8 24 194-217 4-27 (216)
409 COG0194 Gmk Guanylate kinase [ 93.4 0.085 1.9E-06 50.4 3.9 24 194-217 4-27 (191)
410 PRK05986 cob(I)alamin adenolsy 93.4 0.43 9.3E-06 46.5 8.8 122 194-318 22-158 (191)
411 KOG0473 Leucine-rich repeat pr 93.4 0.0035 7.5E-08 61.1 -5.4 84 574-657 38-121 (326)
412 PLN02318 phosphoribulokinase/u 93.4 0.092 2E-06 59.7 4.8 35 183-217 54-88 (656)
413 PRK12727 flagellar biosynthesi 93.4 0.2 4.4E-06 56.5 7.4 24 194-217 350-373 (559)
414 PF08433 KTI12: Chromatin asso 93.4 0.12 2.6E-06 54.0 5.4 23 195-217 2-24 (270)
415 KOG2170 ATPase of the AAA+ sup 93.4 0.11 2.3E-06 53.3 4.7 112 172-302 83-202 (344)
416 cd02023 UMPK Uridine monophosp 93.3 0.049 1.1E-06 54.5 2.4 22 196-217 1-22 (198)
417 PRK12597 F0F1 ATP synthase sub 93.3 0.26 5.5E-06 55.3 8.1 94 195-290 144-247 (461)
418 PF00158 Sigma54_activat: Sigm 93.3 0.21 4.5E-06 48.3 6.6 45 173-217 1-45 (168)
419 TIGR03575 selen_PSTK_euk L-ser 93.3 0.23 5.1E-06 53.4 7.5 21 197-217 2-22 (340)
420 TIGR02322 phosphon_PhnN phosph 93.3 0.061 1.3E-06 52.9 2.9 23 195-217 2-24 (179)
421 PF13481 AAA_25: AAA domain; P 93.3 0.086 1.9E-06 52.5 4.1 41 195-235 33-81 (193)
422 PF00154 RecA: recA bacterial 93.3 0.28 6.1E-06 52.2 8.0 90 193-291 52-142 (322)
423 PF03308 ArgK: ArgK protein; 93.3 0.1 2.2E-06 52.8 4.5 62 179-240 14-75 (266)
424 PRK13537 nodulation ABC transp 93.3 0.7 1.5E-05 49.7 11.2 22 195-216 34-55 (306)
425 KOG0735 AAA+-type ATPase [Post 93.3 3 6.5E-05 48.2 16.1 154 171-351 667-848 (952)
426 KOG1532 GTPase XAB1, interacts 93.2 0.066 1.4E-06 53.8 2.9 26 192-217 17-42 (366)
427 PRK13545 tagH teichoic acids e 93.2 0.83 1.8E-05 52.0 12.0 24 194-217 50-73 (549)
428 PRK00131 aroK shikimate kinase 93.2 0.063 1.4E-06 52.4 2.9 24 194-217 4-27 (175)
429 cd03280 ABC_MutS2 MutS2 homolo 93.2 0.43 9.2E-06 47.8 8.9 21 195-215 29-49 (200)
430 PF06745 KaiC: KaiC; InterPro 93.2 0.096 2.1E-06 53.7 4.4 94 192-289 17-124 (226)
431 PRK05973 replicative DNA helic 93.2 0.47 1E-05 48.4 9.1 48 194-245 64-111 (237)
432 PRK11000 maltose/maltodextrin 93.2 0.58 1.2E-05 51.7 10.7 22 195-216 30-51 (369)
433 TIGR03498 FliI_clade3 flagella 93.2 0.25 5.5E-06 54.8 7.7 23 195-217 141-163 (418)
434 cd03285 ABC_MSH2_euk MutS2 hom 93.2 0.077 1.7E-06 53.9 3.5 23 194-216 30-52 (222)
435 TIGR03796 NHPM_micro_ABC1 NHPM 93.2 0.68 1.5E-05 56.5 12.3 23 194-216 505-527 (710)
436 PRK09519 recA DNA recombinatio 93.2 0.23 5E-06 59.1 7.8 100 182-290 47-148 (790)
437 KOG0736 Peroxisome assembly fa 93.2 3 6.6E-05 48.6 16.1 149 171-346 672-851 (953)
438 COG1124 DppF ABC-type dipeptid 93.2 0.1 2.2E-06 52.0 4.2 23 194-216 33-55 (252)
439 COG2274 SunT ABC-type bacterio 93.1 0.74 1.6E-05 55.0 12.0 61 262-322 608-673 (709)
440 PRK10751 molybdopterin-guanine 93.1 0.079 1.7E-06 51.0 3.3 25 193-217 5-29 (173)
441 PRK06217 hypothetical protein; 93.1 0.062 1.3E-06 53.0 2.6 22 196-217 3-24 (183)
442 PRK13765 ATP-dependent proteas 93.1 0.15 3.2E-06 59.9 6.1 76 171-252 31-106 (637)
443 cd02028 UMPK_like Uridine mono 93.1 0.059 1.3E-06 52.8 2.4 22 196-217 1-22 (179)
444 COG1703 ArgK Putative periplas 93.1 0.088 1.9E-06 54.1 3.6 65 180-244 37-101 (323)
445 PF07726 AAA_3: ATPase family 93.1 0.069 1.5E-06 48.0 2.6 27 197-225 2-28 (131)
446 PRK00889 adenylylsulfate kinas 93.1 0.08 1.7E-06 51.8 3.3 24 194-217 4-27 (175)
447 PRK09280 F0F1 ATP synthase sub 93.1 0.32 7E-06 54.3 8.3 94 195-290 145-248 (463)
448 PRK05703 flhF flagellar biosyn 93.0 0.31 6.7E-06 54.7 8.3 39 194-232 221-259 (424)
449 PRK00279 adk adenylate kinase; 93.0 0.5 1.1E-05 47.9 9.2 22 196-217 2-23 (215)
450 COG1131 CcmA ABC-type multidru 93.0 0.93 2E-05 48.3 11.6 24 194-217 31-54 (293)
451 TIGR03263 guanyl_kin guanylate 93.0 0.073 1.6E-06 52.3 3.0 23 195-217 2-24 (180)
452 PRK10820 DNA-binding transcrip 93.0 0.32 6.9E-06 56.5 8.6 47 171-217 204-250 (520)
453 cd02021 GntK Gluconate kinase 93.0 0.063 1.4E-06 51.0 2.4 22 196-217 1-22 (150)
454 PRK11174 cysteine/glutathione 93.0 0.84 1.8E-05 54.4 12.5 23 194-216 376-398 (588)
455 PF12775 AAA_7: P-loop contain 93.0 0.1 2.2E-06 54.8 4.1 34 181-217 23-56 (272)
456 KOG0743 AAA+-type ATPase [Post 93.0 12 0.00026 41.2 19.7 121 195-353 236-385 (457)
457 PRK08927 fliI flagellum-specif 93.0 0.3 6.5E-06 54.3 7.9 93 194-291 158-259 (442)
458 PF13504 LRR_7: Leucine rich r 93.0 0.069 1.5E-06 29.4 1.5 16 625-640 2-17 (17)
459 COG0467 RAD55 RecA-superfamily 93.0 0.14 3.1E-06 53.7 5.3 42 192-235 21-62 (260)
460 TIGR00958 3a01208 Conjugate Tr 92.9 0.78 1.7E-05 55.8 12.3 23 194-216 507-529 (711)
461 TIGR01192 chvA glucan exporter 92.9 0.92 2E-05 53.8 12.6 23 194-216 361-383 (585)
462 PF03193 DUF258: Protein of un 92.9 0.17 3.6E-06 48.0 5.1 35 178-217 24-58 (161)
463 TIGR02236 recomb_radA DNA repa 92.9 0.27 5.8E-06 53.1 7.5 64 185-249 86-153 (310)
464 cd03243 ABC_MutS_homologs The 92.9 0.48 1E-05 47.5 8.7 22 195-216 30-51 (202)
465 TIGR00708 cobA cob(I)alamin ad 92.9 0.64 1.4E-05 44.6 9.0 121 194-318 5-140 (173)
466 PRK13657 cyclic beta-1,2-gluca 92.9 0.51 1.1E-05 56.2 10.4 23 194-216 361-383 (588)
467 TIGR01842 type_I_sec_PrtD type 92.9 0.85 1.8E-05 53.7 12.2 23 194-216 344-366 (544)
468 TIGR03305 alt_F1F0_F1_bet alte 92.9 0.31 6.7E-06 54.3 7.8 95 195-291 139-243 (449)
469 COG0563 Adk Adenylate kinase a 92.8 0.072 1.6E-06 51.8 2.6 22 196-217 2-23 (178)
470 KOG1051 Chaperone HSP104 and r 92.8 0.46 9.9E-06 57.1 9.6 115 171-303 562-685 (898)
471 PRK05439 pantothenate kinase; 92.8 0.13 2.9E-06 54.5 4.8 25 192-216 84-108 (311)
472 cd00227 CPT Chloramphenicol (C 92.8 0.075 1.6E-06 51.9 2.8 23 195-217 3-25 (175)
473 PRK11176 lipid transporter ATP 92.8 0.7 1.5E-05 55.0 11.5 23 194-216 369-391 (582)
474 cd01132 F1_ATPase_alpha F1 ATP 92.8 0.43 9.3E-06 49.4 8.2 102 195-301 70-183 (274)
475 COG3840 ThiQ ABC-type thiamine 92.8 1.2 2.5E-05 42.6 10.1 23 194-216 25-47 (231)
476 PRK11388 DNA-binding transcrip 92.8 0.64 1.4E-05 55.8 11.1 47 171-217 325-371 (638)
477 TIGR01420 pilT_fam pilus retra 92.8 0.24 5.2E-06 54.2 6.8 112 194-321 122-233 (343)
478 COG0488 Uup ATPase components 92.7 0.27 5.8E-06 56.5 7.4 136 195-337 349-511 (530)
479 TIGR02788 VirB11 P-type DNA tr 92.7 0.49 1.1E-05 50.9 9.0 112 194-320 144-255 (308)
480 TIGR00554 panK_bact pantothena 92.7 0.11 2.3E-06 54.7 3.9 25 192-216 60-84 (290)
481 PRK11823 DNA repair protein Ra 92.7 0.42 9.1E-06 54.1 8.8 53 181-235 67-119 (446)
482 cd00820 PEPCK_HprK Phosphoenol 92.7 0.1 2.2E-06 45.5 3.1 22 194-215 15-36 (107)
483 PRK00409 recombination and DNA 92.7 11 0.00024 46.0 21.3 22 194-215 327-348 (782)
484 PF00625 Guanylate_kin: Guanyl 92.6 0.098 2.1E-06 51.6 3.3 36 194-231 2-37 (183)
485 cd02020 CMPK Cytidine monophos 92.6 0.074 1.6E-06 50.2 2.4 22 196-217 1-22 (147)
486 PRK03846 adenylylsulfate kinas 92.6 0.1 2.2E-06 52.3 3.4 25 193-217 23-47 (198)
487 TIGR02857 CydD thiol reductant 92.6 0.49 1.1E-05 55.5 9.7 23 194-216 348-370 (529)
488 PF08477 Miro: Miro-like prote 92.6 0.095 2.1E-06 47.3 2.9 22 197-218 2-23 (119)
489 cd03287 ABC_MSH3_euk MutS3 hom 92.5 0.62 1.3E-05 47.2 8.9 23 194-216 31-53 (222)
490 PRK10078 ribose 1,5-bisphospho 92.5 0.096 2.1E-06 51.8 3.1 23 195-217 3-25 (186)
491 KOG1970 Checkpoint RAD17-RFC c 92.4 0.75 1.6E-05 51.3 9.8 41 176-216 87-132 (634)
492 TIGR02203 MsbA_lipidA lipid A 92.4 0.83 1.8E-05 54.2 11.5 23 194-216 358-380 (571)
493 cd00071 GMPK Guanosine monopho 92.4 0.088 1.9E-06 49.0 2.5 22 196-217 1-22 (137)
494 TIGR01193 bacteriocin_ABC ABC- 92.4 0.86 1.9E-05 55.6 11.8 23 194-216 500-522 (708)
495 PRK00300 gmk guanylate kinase; 92.4 0.099 2.2E-06 52.6 3.1 24 194-217 5-28 (205)
496 PRK15439 autoinducer 2 ABC tra 92.4 1.4 3.1E-05 51.3 13.0 23 194-216 37-59 (510)
497 TIGR01040 V-ATPase_V1_B V-type 92.4 0.28 6E-06 54.4 6.6 96 195-290 142-257 (466)
498 PF02562 PhoH: PhoH-like prote 92.4 0.17 3.7E-06 50.2 4.5 52 176-231 5-56 (205)
499 PRK07594 type III secretion sy 92.4 0.38 8.2E-06 53.5 7.7 47 194-244 155-202 (433)
500 PRK13947 shikimate kinase; Pro 92.3 0.09 2E-06 51.2 2.6 22 196-217 3-24 (171)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-93 Score=834.48 Aligned_cols=829 Identities=27% Similarity=0.437 Sum_probs=637.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhccChHHHHHHHHHHHHhhhhhHH
Q 047503 2 AEAAVNLVIETLGSLLVQEINLLGSTKQEVQSIKNELESIRSFLKDADAREAAEEEEGESNEGVKTWVKQVREEAFRIED 81 (920)
Q Consensus 2 a~~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~L~~i~~~l~~a~~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD 81 (920)
|++.++..++|+.+++.+++..+.++++.+..|+++|..+++++.|++++ +... ..+..|...+++++|++||
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~--~~~~-----~~~~~~~e~~~~~~~~~e~ 73 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK--RDDL-----ERRVNWEEDVGDLVYLAED 73 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh--cchH-----HHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999998 6665 7889999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcccc--chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccCcccccCCCCccccccccC
Q 047503 82 VIDEYILKEAKLARGSGLTYH--LRKFFCFINVLKLHHGIASKIEVIKSSLADIQRRERHYSFRSIEQGSVSRTRNVISH 159 (920)
Q Consensus 82 ~ld~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (920)
.++.|..+............+ ..+..+.. .+++..+..+..+.+++.++.+..+.|+....-.. ...... ..
T Consensus 74 ~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~---~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~-~~~~~~--~~ 147 (889)
T KOG4658|consen 74 IIWLFLVEEIERKANDLLSTRSVERQRLCLC---GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV-VGESLD--PR 147 (889)
T ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHhhh---hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec-cccccc--ch
Confidence 999999877653211111101 11222221 45667777788888888888888888775432111 000000 11
Q ss_pred CCCCCCCCCCCCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc-ccCCCCceEEEEeCCCCCH
Q 047503 160 DPRVGSLFIEDDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY-VMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 160 ~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~ 238 (920)
..+.+.|...+.. ||.+..++++++.|.+++ ..+++|+||||+||||||++++|+.. ++.+||.++||+||+.|+.
T Consensus 148 ~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 148 EKVETRPIQSESD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred hhcccCCCCcccc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 1123333333444 999999999999999987 38999999999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccch
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
..++.+|++.++..... ......++++..|.+.|++|||||||||||+..+|+.+..++|...+||+|++|||+.
T Consensus 225 ~~iq~~Il~~l~~~~~~-----~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~ 299 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEE-----WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSE 299 (889)
T ss_pred HhHHHHHHHHhccCCcc-----cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccH
Confidence 99999999998764211 2222347889999999999999999999999999999999999999999999999999
Q ss_pred hhhhh-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChH
Q 047503 319 AVADF-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVS 397 (920)
Q Consensus 319 ~v~~~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~ 397 (920)
+|+.. ++.. ..++++.|+.+|||.||++.+|.... ..++.++++|++|+++|+|+|||++++|+.|+.|.. .+
T Consensus 300 ~V~~~~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~--~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~ 373 (889)
T KOG4658|consen 300 EVCGRAMGVD---YPIEVECLTPEEAWDLFQKKVGPNTL--GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQ 373 (889)
T ss_pred hhhhccccCC---ccccccccCccccHHHHHHhhccccc--cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HH
Confidence 99987 5443 88999999999999999999998753 344559999999999999999999999999999986 88
Q ss_pred HHHHHHhccCCCCCC-C-CchhhHHHHhhhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccC-CCCCChH
Q 047503 398 EWRRSLEGLGSKLGS-D-PHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPY-STRPPSE 474 (920)
Q Consensus 398 ~w~~~~~~~~~~~~~-~-~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~-~~~~~~e 474 (920)
+|+++++.+.+.... . ...+.+.++|.+||+.||.++|.||+|||+||+||+|+++.||.+|+||||+.+ ..+..++
T Consensus 374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~ 453 (889)
T KOG4658|consen 374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE 453 (889)
T ss_pred HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence 999999999887433 2 235689999999999999999999999999999999999999999999999987 5578899
Q ss_pred HHHHHHHHHHHhcccccccc---ccCceEecHHHHHHHHHHhh-----ccCceEeCCCCcc-----ccCCCeeEEEEecC
Q 047503 475 QLGEEYLSELIDRSLVHVSR---RARSCRVHDLMHEIILEKTK-----DLGFCLDLSREDL-----SCCTKTRRISINQS 541 (920)
Q Consensus 475 ~~~~~~l~~L~~~sll~~~~---~~~~~~mHdlv~~~~~~~~~-----~e~~~~~~~~~~~-----~~~~~~r~lsl~~~ 541 (920)
++|+.|+.+|++++|++... ...+|+|||++||+|.++++ +++++........ .....+||+++..+
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN 533 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc
Confidence 99999999999999999986 45789999999999999999 7776665432211 23357899999988
Q ss_pred cc-ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCC-CCcCcccccCcccCceeeecCCCccccCcc
Q 047503 542 LN-NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAP-IEFLPEEVGNLFHLHYLSVRNTKVKVLPKS 619 (920)
Q Consensus 542 ~~-~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~ 619 (920)
.. .......+++++||.+.++..-.......+|..++.||||||++|. +.++|++|++|.|||||++++|.+..||.+
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH
Confidence 76 5556677889999999987531234556779999999999999875 669999999999999999999999999999
Q ss_pred ccCCCCCcEEeecCC-cccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCC
Q 047503 620 IGRLLNLQTLDLKHS-LVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLR 698 (920)
Q Consensus 620 i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~ 698 (920)
+.+|+.|.+|++..+ .+..+|..+..|++||+|.+..... .........+.++.+|+.+.....+......+..+.
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeecccc---ccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 999999999999988 5556666677799999999987431 111122233455555555555433333345555566
Q ss_pred CCcEEEEE-e-cCCcchhHHHHhccCCCCCEEEEeeCCCCcccc-c-cc--CC-CCcccccEEEEecc-CCCCCccccCC
Q 047503 699 QLRKLGIQ-L-TNDDGKNLCASIADMENLESLTVESTSREETFD-I-QS--LG-SPPQYLEHLYLVGS-MKNLPDWIFKL 770 (920)
Q Consensus 699 ~L~~L~l~-~-~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~-l-~~--l~-~~~~~L~~L~L~~~-~~~lp~~~~~l 770 (920)
.|+++... . ..........++..+.+|++|.+.+|...+... . .. .. .++ ++..+.+..+ ....+.|....
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP-NLSKVSILNCHMLRDLTWLLFA 769 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH-HHHHHHhhccccccccchhhcc
Confidence 66544433 1 112233456677889999999999997754321 0 00 00 122 4444444443 34667788788
Q ss_pred CCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCe-eeEccCCccccceeeeccCCCCceeeEcC----CCCccc
Q 047503 771 KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEK-LHFKDGWFPRLQRLVLLDLKGVTLMMIDK----GAMPCL 845 (920)
Q Consensus 771 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L 845 (920)
++|+.|.+..|....++++....+..+..+.+..+..... .....++|+++..+.+.... +..+.++. +.||.+
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLL 848 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccCccc
Confidence 9999999999998888888888888777755554433322 34555667776666666533 55555544 566666
Q ss_pred cEEEEecC-CCCCccCcc
Q 047503 846 RELKIGPC-PLLKEIPAG 862 (920)
Q Consensus 846 ~~L~l~~c-~~l~~lp~~ 862 (920)
.++.+.+| .++...|.+
T Consensus 849 ~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 849 STLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccceeccccceeecCCc
Confidence 66666665 445555544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-61 Score=604.19 Aligned_cols=656 Identities=20% Similarity=0.267 Sum_probs=452.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe---CCC-----------
Q 047503 170 DDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV---GRE----------- 235 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---~~~----------- 235 (920)
.+.+|||++.++++..+|.-+.+++++|+|+||||+||||||+.+|+. +..+|++.+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccc
Confidence 457999999999999999766667999999999999999999999994 7889998888742 111
Q ss_pred CC-HHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEE
Q 047503 236 CM-KKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLT 314 (920)
Q Consensus 236 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivT 314 (920)
++ ...+..+++.++....+ ... .. ...+++.++++|+||||||||+.+.|+.+.......++||+||||
T Consensus 261 ~~~~~~l~~~~l~~il~~~~------~~~---~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD------IKI---YH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC------ccc---CC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 01 11233444444433211 110 11 245778899999999999999999999988766666789999999
Q ss_pred ccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCC
Q 047503 315 TRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHG 394 (920)
Q Consensus 315 tR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~ 394 (920)
||+..++..+... .+|+++.|++++||+||+++||+.. ..+.++.+++++|+++|+|+|||++++|+.|+.+
T Consensus 331 Trd~~vl~~~~~~---~~~~v~~l~~~ea~~LF~~~Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-- 402 (1153)
T PLN03210 331 TKDKHFLRAHGID---HIYEVCLPSNELALEMFCRSAFKKN---SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-- 402 (1153)
T ss_pred eCcHHHHHhcCCC---eEEEecCCCHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC--
Confidence 9999998765433 7899999999999999999999763 3356789999999999999999999999999976
Q ss_pred ChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChh-hHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCCh
Q 047503 395 SVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPH-HLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPS 473 (920)
Q Consensus 395 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~ 473 (920)
+..+|..+++++.... ...+..+|++||++|++ ..|.||+++|+|+.+..+ ..+..|++.+....
T Consensus 403 ~~~~W~~~l~~L~~~~-----~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~------ 468 (1153)
T PLN03210 403 DKEDWMDMLPRLRNGL-----DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV------ 468 (1153)
T ss_pred CHHHHHHHHHHHHhCc-----cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc------
Confidence 3789999999886532 24799999999999987 499999999999988755 34778888765532
Q ss_pred HHHHHHHHHHHHhccccccccccCceEecHHHHHHHHHHhhccC-------ceEeCCC-----CccccCCCeeEEEEecC
Q 047503 474 EQLGEEYLSELIDRSLVHVSRRARSCRVHDLMHEIILEKTKDLG-------FCLDLSR-----EDLSCCTKTRRISINQS 541 (920)
Q Consensus 474 e~~~~~~l~~L~~~sll~~~~~~~~~~mHdlv~~~~~~~~~~e~-------~~~~~~~-----~~~~~~~~~r~lsl~~~ 541 (920)
+..+..|+++||++... ..+.|||++|++|+.+++++. |.....+ .......+++++++...
T Consensus 469 ----~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 ----NIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ----hhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 22389999999998764 579999999999999987653 1111000 00112346788877644
Q ss_pred cc-----ccccccCCCCceEEEeeccCC-----CCcchhhhhhccC-CeeeEEEccCCCCCcCcccccCcccCceeeecC
Q 047503 542 LN-----NVLEWTEDSKIRSVFFLNVDK-----LPGSFMTKLVAEF-KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRN 610 (920)
Q Consensus 542 ~~-----~~~~~~~~~~lrsL~~~~~~~-----~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 610 (920)
.. .......+++|+.|.+..... ....++ .-|..+ ..||.|++.++++..+|..+ .+.+|++|++++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG 620 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC
Confidence 32 112245677777777654321 111122 222333 34677777766666666655 356666666666
Q ss_pred CCccccCccccCCCCCcEEeecCC-cccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC--
Q 047503 611 TKVKVLPKSIGRLLNLQTLDLKHS-LVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-- 687 (920)
Q Consensus 611 ~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-- 687 (920)
+.+..+|..+..+++|+.|+|+++ .++.+|. +..+++|++|++++| .....+|..++.+++|+.|++..|.
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c-----~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC-----SSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC-----CCccccchhhhccCCCCEEeCCCCCCc
Confidence 666666666666666666666655 4555553 556666666666665 2334555566666666666665544
Q ss_pred chhHHhcccCCCCcEEEEE-ecCC------------------cchhHHHHhccCCCCCEEEEeeCCCCccc----cc-cc
Q 047503 688 STILKELRKLRQLRKLGIQ-LTND------------------DGKNLCASIADMENLESLTVESTSREETF----DI-QS 743 (920)
Q Consensus 688 ~~~~~~l~~l~~L~~L~l~-~~~~------------------~~~~l~~~l~~~~~L~~L~L~~~~~~~~~----~l-~~ 743 (920)
...+.. .++++|+.|+++ +... ....++..+ .+++|.+|.+.++...... .+ ..
T Consensus 695 ~~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 695 EILPTG-INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CccCCc-CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchh
Confidence 111211 145555555554 2111 001122111 2344444444432211000 00 00
Q ss_pred CCCCcccccEEEEecc--CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCcccc
Q 047503 744 LGSPPQYLEHLYLVGS--MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRL 821 (920)
Q Consensus 744 l~~~~~~L~~L~L~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L 821 (920)
....+++|+.|.|+++ ...+|.+++++++|+.|+|++|......+.. .++++|+.|+|++|.....++. ..++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~~L~sL~~L~Ls~c~~L~~~p~---~~~nL 848 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-INLESLESLDLSGCSRLRTFPD---ISTNI 848 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-CCccccCEEECCCCCccccccc---ccccc
Confidence 1112348999999887 4578999999999999999998543333333 3789999999998866554432 34689
Q ss_pred ceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecChHH
Q 047503 822 QRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGMLTV 880 (920)
Q Consensus 822 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 880 (920)
+.|++.++ .++.+|...+.+++|+.|++++|+.++.+|..+..+++|+.+++++|+..
T Consensus 849 ~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 849 SDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 99999875 56778877888999999999999999999999999999999999999743
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.8e-44 Score=382.49 Aligned_cols=284 Identities=36% Similarity=0.615 Sum_probs=229.7
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccC
Q 047503 176 IESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQ 255 (920)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 255 (920)
||.++++|.++|....++.++|+|+||||+||||||++++++..++.+|+.++||.+++..+...++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999666799999999999999999999999877999999999999999999999999999999765221
Q ss_pred CccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcccCCccceeec
Q 047503 256 SALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQSSFVQVHEL 335 (920)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l 335 (920)
. ....+.++....+.+.|+++++||||||||+...|+.+...++....|++||||||+..++..+... ...+++
T Consensus 81 ~----~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l 154 (287)
T PF00931_consen 81 I----SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIEL 154 (287)
T ss_dssp S----SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEEC
T ss_pred c----ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 1 1344667899999999999999999999999999999998888877899999999999988766542 278999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHHhccCCCCCCC-C
Q 047503 336 EALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLEGLGSKLGSD-P 414 (920)
Q Consensus 336 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~-~ 414 (920)
++|+.++|++||.+.++... ...++.+.+.+++|+++|+|+|||++++|++|+.+. +..+|..+++++....... +
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~~~~~l~~~~~~~~~ 231 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE--SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEEALEELENSLRESRD 231 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHHHHHHHHHCHTCSSG
T ss_pred cccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 99999999999999997654 123455678899999999999999999999997665 4788999998776554322 2
Q ss_pred chhhHHHHhhhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCC
Q 047503 415 HLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYS 468 (920)
Q Consensus 415 ~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~ 468 (920)
....+..++.+||+.||++.|.||+|||+||+++.|+++.++++|+++|||...
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 347899999999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=6e-25 Score=276.18 Aligned_cols=338 Identities=21% Similarity=0.253 Sum_probs=185.4
Q ss_pred CCCeeEEEEecCcc-ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCC-cCcccccCcccCceee
Q 047503 530 CTKTRRISINQSLN-NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIE-FLPEEVGNLFHLHYLS 607 (920)
Q Consensus 530 ~~~~r~lsl~~~~~-~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~ 607 (920)
..++|+|.+.++.. ...+...+++|++|.+.++.. ....+..+.++++|++|+|++|.+. .+|..++++.+|++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcc--cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 34566666665543 112223455666666554432 1123344566777777777777665 5666777777777777
Q ss_pred ecCCCcc-ccCccccCCCCCcEEeecCCccc-ccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccc
Q 047503 608 VRNTKVK-VLPKSIGRLLNLQTLDLKHSLVT-QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQ 685 (920)
Q Consensus 608 L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~ 685 (920)
+++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|. ....+|..++++++|++|++..
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-----LTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-----eccccChhHhCCCCCCEEECcC
Confidence 7776654 56667777777777777777655 566667777777777776652 2224555666666666666665
Q ss_pred cC--chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccC--C
Q 047503 686 AN--STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSM--K 761 (920)
Q Consensus 686 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~ 761 (920)
+. ...+..+..+++|+.|+++.+.... .++..+..+++|+.|++.+|...+..+ ..+...+ +|+.|.++++. +
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~-~L~~L~L~~n~l~~ 346 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLP-RLQVLQLWSNKFSG 346 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCC-CCCEEECcCCCCcC
Confidence 54 2344555566666666665332221 234445555666666665554433221 2223333 45555555441 2
Q ss_pred CCCccccCCCCcceEEEEeeccC------------------------CCcccccCCCcccceeEEecccCCCeeeEccCC
Q 047503 762 NLPDWIFKLKNLVRIGLYWSELT------------------------NDPMNVLQALPNLLELRLRDAYDYEKLHFKDGW 817 (920)
Q Consensus 762 ~lp~~~~~l~~L~~L~L~~~~l~------------------------~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 817 (920)
.+|.++..+++|+.|+|++|.+. +..+..++.+++|+.|+|++|.+...++.....
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 34444444455555555544444 334444445555555555555444444433444
Q ss_pred ccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 818 FPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 818 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+++|+.|++++|.....++.....+++|+.|++++|...+.+|..+ ..++|+.|++++|.
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 5555555555554333334334456666666666666555555443 34666667766654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.2e-24 Score=273.51 Aligned_cols=294 Identities=21% Similarity=0.249 Sum_probs=172.5
Q ss_pred CCeeeEEEccCCCCC-cCcccccCcccCceeeecCCCcc-ccCccccCCCCCcEEeecCCccc-ccchhhcccccCCeEe
Q 047503 577 FKLMKVLDFEDAPIE-FLPEEVGNLFHLHYLSVRNTKVK-VLPKSIGRLLNLQTLDLKHSLVT-QLPVEIKNLKKLRYLL 653 (920)
Q Consensus 577 l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~ 653 (920)
+++|++|+|++|.+. .+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 444555555555444 44555555555555555555543 45555555555555555555443 4455555555555555
Q ss_pred ecccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEe
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVE 731 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~ 731 (920)
+++|. ....+|..++.+++|++|++..+. ...+..++.+++|+.|.++.+.... .++..+..+++|++|+++
T Consensus 219 L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNN-----LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CcCCc-----cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec-cCchhHhhccCcCEEECc
Confidence 55542 122445555666666666665554 2344455566666666655332221 234445556666666666
Q ss_pred eCCCCcccccccCCCCcccccEEEEeccC--CCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCC
Q 047503 732 STSREETFDIQSLGSPPQYLEHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYE 809 (920)
Q Consensus 732 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~ 809 (920)
+|...+.++ ..+...+ +|+.|+++++. +.+|.++..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+..
T Consensus 293 ~n~l~~~~p-~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 293 DNSLSGEIP-ELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCeeccCCC-hhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 654433221 2223344 66666666652 3456666666677777777666666666666666777777776665554
Q ss_pred eeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 810 KLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 810 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.++.....+++|+.|++.++.....++...+.+++|+.|++++|.....+|..+..+++|+.|+++++.
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 444444456667777777665444555556678888888888888666778888888888888888764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.3e-26 Score=242.17 Aligned_cols=316 Identities=20% Similarity=0.201 Sum_probs=226.9
Q ss_pred CCCeeEEEEecCcc--ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceee
Q 047503 530 CTKTRRISINQSLN--NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLS 607 (920)
Q Consensus 530 ~~~~r~lsl~~~~~--~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 607 (920)
..++.||++.-+.. ..-+..+++.||++.+..+.--+..++++ +-+++.|.+|||++|++.+.|..+.+-+++-.|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 45778888876554 23346789999999988765533334444 4689999999999999999999999999999999
Q ss_pred ecCCCccccCcccc-CCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCcccccccc
Q 047503 608 VRNTKVKVLPKSIG-RLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQA 686 (920)
Q Consensus 608 L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~ 686 (920)
|++|+|.++|.++. +|.-|-.|||++|+++.+|+.+.+|..|+.|.|++|.+. ..-...+..+++|++|.+++.
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-----hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-----HFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-----HHHHhcCccchhhhhhhcccc
Confidence 99999999998865 899999999999999999999999999999999997432 222234667889999998877
Q ss_pred C---chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCC
Q 047503 687 N---STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKN 762 (920)
Q Consensus 687 ~---~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~ 762 (920)
+ ...+..+..+.+|+.++++.|+. ..+|..+.++++|+.|+|++|.+.+.- ....... +|++|+++.+ ...
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~L--p~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~-~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNL--PIVPECLYKLRNLRRLNLSGNKITELN--MTEGEWE-NLETLNLSRNQLTV 282 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCC--CcchHHHhhhhhhheeccCcCceeeee--ccHHHHh-hhhhhccccchhcc
Confidence 6 45677788889999999986644 347888999999999999998765421 0111122 6677777765 456
Q ss_pred CCccccCCCCcceEEEEeeccCCC-cccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCC
Q 047503 763 LPDWIFKLKNLVRIGLYWSELTND-PMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGA 841 (920)
Q Consensus 763 lp~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 841 (920)
+|+.+..++.|++|.+.+|+++-+ .++.+|.|.+|+.+...+|.. +-.|.....+++|+.|.|+.+ .+-.+|....-
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHl 360 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHL 360 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccc-ceeechhhhhh
Confidence 777777777777777777766543 344566666666666654432 233333445566666666543 34444444455
Q ss_pred CccccEEEEecCCCCCc
Q 047503 842 MPCLRELKIGPCPLLKE 858 (920)
Q Consensus 842 ~~~L~~L~l~~c~~l~~ 858 (920)
+|.|+.|+++.||++-.
T Consensus 361 L~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cCCcceeeccCCcCccC
Confidence 56666666666665543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-21 Score=207.11 Aligned_cols=334 Identities=17% Similarity=0.216 Sum_probs=249.5
Q ss_pred CCeeEEEEecCcc-cccccc-CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceee
Q 047503 531 TKTRRISINQSLN-NVLEWT-EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLS 607 (920)
Q Consensus 531 ~~~r~lsl~~~~~-~~~~~~-~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~ 607 (920)
.++..+.+..+.. .++... ...++..|.+.++-. .++-.+.++-++.||+|||+.|.|..+| .++..-.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 3455556665544 333333 344566666655433 2233456788899999999999999887 4465667899999
Q ss_pred ecCCCccccCc-cccCCCCCcEEeecCCcccccchh-hcccccCCeEeecccCCCcccccccccCccCCcccCccccccc
Q 047503 608 VRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQ 685 (920)
Q Consensus 608 L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~ 685 (920)
|++|.|+.+.. .+..|.+|.+|.|+.|+++++|.. |.+|++|+.|+|..|..... + -..+..+.+|+.|.+..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv----e-~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV----E-GLTFQGLPSLQNLKLQR 254 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee----h-hhhhcCchhhhhhhhhh
Confidence 99999998864 577889999999999999999974 67799999999998732110 0 12367889999999888
Q ss_pred cCchhH--HhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCC
Q 047503 686 ANSTIL--KELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKN 762 (920)
Q Consensus 686 ~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~ 762 (920)
++...+ ..+-.|.+++.|++..|.... --..++.++..|+.|+++.|.+.. +...++.-.+ +|+.|+|+.+ ..+
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Wsftq-kL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQ-KLKELDLSSNRITR 331 (873)
T ss_pred cCcccccCcceeeecccceeecccchhhh-hhcccccccchhhhhccchhhhhe-eecchhhhcc-cceeEecccccccc
Confidence 874333 346678899999998654322 123467889999999999987643 3456666666 9999999987 556
Q ss_pred CC-ccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee---EccCCccccceeeeccCCCCceeeE-
Q 047503 763 LP-DWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH---FKDGWFPRLQRLVLLDLKGVTLMMI- 837 (920)
Q Consensus 763 lp-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~- 837 (920)
++ ..+..+..|+.|+|++|.+....-..+.++.+|+.|+|+.|.+.-.+. ..+.++++|+.|.+.++ +++.++.
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh
Confidence 64 456778999999999999877777788899999999999886543332 22457999999999996 5677754
Q ss_pred cCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEec
Q 047503 838 DKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCG 876 (920)
Q Consensus 838 ~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 876 (920)
.+..+++||+|++.+|+.-..-|..+.++ .|++|.+..
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 45679999999999999655557788888 999998776
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-21 Score=205.06 Aligned_cols=314 Identities=18% Similarity=0.185 Sum_probs=196.0
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccC-ccccCCCCCcEEe
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLD 630 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~ 630 (920)
+..++|.+.++.- ..+-...|.++++|+.+++..|.++.+|...+...||+.|+|.+|.|.++. +++..++.|++||
T Consensus 78 ~~t~~LdlsnNkl--~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKL--SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeecccccc--ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3445555544332 123335567888888888888888888877777777888888887777654 3466677777777
Q ss_pred ecCCcccccch-hhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCc--hhHHhcccCCCCcEEEEEe
Q 047503 631 LKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANS--TILKELRKLRQLRKLGIQL 707 (920)
Q Consensus 631 L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~--~~~~~l~~l~~L~~L~l~~ 707 (920)
|+.|.|..+|. .+..-.++++|+|.+|.... --...+..+.+|.+|.+..+.. -....+.+|++|+.|++..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~-----l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITT-----LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccc-----cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 77777777764 35555677777777753211 1112355556666666666652 2233455566666666653
Q ss_pred cCCcchhHHHHhccC------------------------CCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCC
Q 047503 708 TNDDGKNLCASIADM------------------------ENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKN 762 (920)
Q Consensus 708 ~~~~~~~l~~~l~~~------------------------~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~ 762 (920)
|..... -...+..+ .++++|+|..|..... .-..+..+. .|+.|+++.+ +.+
T Consensus 231 N~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt-~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 231 NRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLT-SLEQLDLSYNAIQR 307 (873)
T ss_pred cceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh-hcccccccc-hhhhhccchhhhhe
Confidence 322111 01123344 4555555555443221 112333444 6667777665 232
Q ss_pred C-CccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeE----
Q 047503 763 L-PDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMI---- 837 (920)
Q Consensus 763 l-p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---- 837 (920)
+ ++.+..++.|+.|+|++|.++..+...+..|..|+.|.|++|.+...-...+.++.+|+.|+|.++.. .|.+
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l--s~~IEDaa 385 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL--SWCIEDAA 385 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE--EEEEecch
Confidence 2 33445667777777777777777777777777777777777755433233345688999999987642 2333
Q ss_pred -cCCCCccccEEEEecCCCCCccCc-ccCCCCCCCEEEEecCh
Q 047503 838 -DKGAMPCLRELKIGPCPLLKEIPA-GIEHLRNLEILKFCGML 878 (920)
Q Consensus 838 -~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 878 (920)
.+..+|+|++|.+.+|+ ++++|. .+..+++|++|++.+++
T Consensus 386 ~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence 23469999999999987 888874 78899999999999976
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.5e-19 Score=225.10 Aligned_cols=291 Identities=20% Similarity=0.247 Sum_probs=209.0
Q ss_pred chhhhhhccCCeeeEEEccCCCC------C-cCcccccCcc-cCceeeecCCCccccCccccCCCCCcEEeecCCccccc
Q 047503 568 SFMTKLVAEFKLMKVLDFEDAPI------E-FLPEEVGNLF-HLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQL 639 (920)
Q Consensus 568 ~~~~~~~~~l~~Lr~L~L~~~~~------~-~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l 639 (920)
.+....|.+|++|+.|.+..+.. . .+|..+..++ +|++|.+.++.+..+|..+ .+.+|+.|++.+|.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 34566789999999999976532 2 5677777764 6999999999999999988 689999999999999999
Q ss_pred chhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEEE-ecCCcchhHH
Q 047503 640 PVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQ-LTNDDGKNLC 716 (920)
Q Consensus 640 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~-~~~~~~~~l~ 716 (920)
|.++..+++|+.|+++++. ....+| .++.+++|++|++.+|. ...+..+..+++|+.|+++ ++.. ..++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~-----~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L--~~Lp 698 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSK-----NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL--EILP 698 (1153)
T ss_pred ccccccCCCCCEEECCCCC-----CcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc--CccC
Confidence 9999999999999999862 233455 58889999999999876 5567788999999999998 4322 2244
Q ss_pred HHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCC-------------------------
Q 047503 717 ASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKL------------------------- 770 (920)
Q Consensus 717 ~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l------------------------- 770 (920)
..+ ++++|+.|++++|.....+ ...+.+|+.|+|.++ ...+|..+ .+
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccch
Confidence 333 6789999999988643322 122337777777765 34555433 23
Q ss_pred ------CCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCcc
Q 047503 771 ------KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPC 844 (920)
Q Consensus 771 ------~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 844 (920)
++|+.|+|++|......+..++++++|+.|+|++|...+.++... .+++|+.|++++|..+..++. ..++
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~n 847 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTN 847 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccc
Confidence 455666666665444455556666777777776665555554332 466677777776666555432 2356
Q ss_pred ccEEEEecCCCCCccCcccCCCCCCCEEEEecChH
Q 047503 845 LRELKIGPCPLLKEIPAGIEHLRNLEILKFCGMLT 879 (920)
Q Consensus 845 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 879 (920)
|+.|++++|. ++.+|..+..+++|+.|++++|+.
T Consensus 848 L~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 848 ISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred cCEeECCCCC-CccChHHHhcCCCCCEEECCCCCC
Confidence 7777776654 566788888999999999999973
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=1.1e-21 Score=208.92 Aligned_cols=333 Identities=20% Similarity=0.196 Sum_probs=213.8
Q ss_pred CeeEEEEecCccc---cc-cccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceee
Q 047503 532 KTRRISINQSLNN---VL-EWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLS 607 (920)
Q Consensus 532 ~~r~lsl~~~~~~---~~-~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 607 (920)
-+|.+.+.+++.. ++ ....+..++-|.+.... ....|+-+..+.+|..|.+++|++.++...++.|+.||.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~---L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK---LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh---hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 4566666666541 22 23346666666654432 23445666777888888888888877777778888888888
Q ss_pred ecCCCcc--ccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCc-cCCcccCcccccc
Q 047503 608 VRNTKVK--VLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIV 684 (920)
Q Consensus 608 L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~ 684 (920)
++.|+++ .+|..|.+|..|.+|||++|++.+.|..+.+-.++-.|+|++|+ ...+|.. +-+++.|-.|+++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~------IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN------IETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc------cccCCchHHHhhHhHhhhccc
Confidence 8887766 67888888888888888888888888888888888888888753 3345543 4577778888877
Q ss_pred ccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCC
Q 047503 685 QAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKN 762 (920)
Q Consensus 685 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~ 762 (920)
.+. ...+..+..+.+|++|.++.|....-.+ .-+..+.+|+.|.+++....-.-...++.... +|..++++.+ ...
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSENNLPI 236 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccchhhcCCCchhhhh-hhhhccccccCCCc
Confidence 777 5666677777777777777443222111 12344556666666655332111112233333 6666666654 456
Q ss_pred CCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCC-CceeeEcCCC
Q 047503 763 LPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKG-VTLMMIDKGA 841 (920)
Q Consensus 763 lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~ 841 (920)
+|..+-++++|+.|+|++|.++... ...+...+|+.|+|+.|... .+|.....+++|+.|.+.++.. .+-+|...|.
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 6666677777777777777765422 22344556777777766543 2343344567777777765432 2235666677
Q ss_pred CccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 842 MPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 842 ~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+.+|+.+...+|. ++-+|.++..|+.|+.|.++.+.
T Consensus 315 L~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 315 LIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc
Confidence 7777777777554 67778888888888888777653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.5e-20 Score=191.25 Aligned_cols=299 Identities=23% Similarity=0.267 Sum_probs=184.4
Q ss_pred cchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhccc
Q 047503 567 GSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNL 646 (920)
Q Consensus 567 ~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l 646 (920)
...++.-+.....|+.|+.+.|.+..+|++|+.+..|..|+..+|++..+|.+++++..|..|++.+|+++.+|....++
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m 182 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAM 182 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHH
Confidence 34445556777788888888888888888888888888888888888888888888888888888888888777776668
Q ss_pred ccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcc------------------------cCCCCcE
Q 047503 647 KKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELR------------------------KLRQLRK 702 (920)
Q Consensus 647 ~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~------------------------~l~~L~~ 702 (920)
+.|+||++..| ....+|+.+|.+.+|..|++..+......++. .+++|..
T Consensus 183 ~~L~~ld~~~N------~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 183 KRLKHLDCNSN------LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHhcccchh------hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 88888887764 34467777777777777776655522222333 4555555
Q ss_pred EEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccC----------------------
Q 047503 703 LGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSM---------------------- 760 (920)
Q Consensus 703 L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---------------------- 760 (920)
|++.-++. ...|..+..+.+|++|++++|..+... .+++.. .|+.|-+.|+.
T Consensus 257 LDLRdNkl--ke~Pde~clLrsL~rLDlSNN~is~Lp--~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 257 LDLRDNKL--KEVPDEICLLRSLERLDLSNNDISSLP--YSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred eecccccc--ccCchHHHHhhhhhhhcccCCccccCC--cccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 55553322 234555566677777777777554321 011111 12222222210
Q ss_pred -----------------CCCCcccc----CCCC--------------------------cceEEEEeeccC---------
Q 047503 761 -----------------KNLPDWIF----KLKN--------------------------LVRIGLYWSELT--------- 784 (920)
Q Consensus 761 -----------------~~lp~~~~----~l~~--------------------------L~~L~L~~~~l~--------- 784 (920)
...|.|.. ...+ .+.++++.|++.
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~l 410 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVEL 410 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHH
Confidence 00111100 0001 222333333221
Q ss_pred --------------CCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCC--------------------
Q 047503 785 --------------NDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLK-------------------- 830 (920)
Q Consensus 785 --------------~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------------- 830 (920)
+..+..++.+++|..|+|++|..- .+|...+.+-.|+.|+++.+.
T Consensus 411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLAS 489 (565)
T ss_pred HHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhc
Confidence 223334556777777777766432 344445555666666666532
Q ss_pred --CCceeeEc-CCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecChH
Q 047503 831 --GVTLMMID-KGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGMLT 879 (920)
Q Consensus 831 --~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 879 (920)
.+..++.. .+.|.+|..|++.+|. +..+|++++++++|++|++.|+|.
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 22233222 4678999999999776 888999999999999999999983
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=5.4e-19 Score=198.05 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=53.1
Q ss_pred hhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhh
Q 047503 572 KLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEI 643 (920)
Q Consensus 572 ~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i 643 (920)
.-+..+.+|+.|+++.|.+..+|.+++++.+|+||+|.+|.+..+|.++..+++|+.|+++.|.+...|.-+
T Consensus 62 ~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 62 IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVI 133 (1081)
T ss_pred chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhH
Confidence 344666777777777777777777777777777777777777777777777777777777777766666443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=2.8e-19 Score=182.08 Aligned_cols=265 Identities=23% Similarity=0.263 Sum_probs=177.9
Q ss_pred cCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeec
Q 047503 576 EFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 655 (920)
.-..|..|++++|.++.+.+.+.++..|..|++.++.+.++|++++.+..++.|+.++|++..+|..++.+++|++|+++
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 33456667777777776666667777777777777777777777777777777777777777777777777777777776
Q ss_pred ccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCC
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTS 734 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 734 (920)
.| ...++|++++.+..|..++..++. ...++.+..+.+|..+.+..++ ..++++..-.++.|++|+...|.
T Consensus 123 ~n------~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~--l~~l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 123 SN------ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK--LKALPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred cc------ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc--hhhCCHHHHHHHHHHhcccchhh
Confidence 64 234566677777777777666555 3444445555444444444221 11233333335555555554432
Q ss_pred CCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEc
Q 047503 735 REETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFK 814 (920)
Q Consensus 735 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~ 814 (920)
.+.+|..++.+..|.-|+|..|++.. ++.++++..|+.|+++.|.+..-....
T Consensus 195 -------------------------L~tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 195 -------------------------LETLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred -------------------------hhcCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHhhHHHH
Confidence 24567777778888888888887643 346777888888888777554222222
Q ss_pred cCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 815 DGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 815 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
...+++|..|++.++ .+++.|.+..-+.+|++|++++|. +.++|..++++ .|+.|-+.|+|
T Consensus 248 ~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 346788888888875 578888888788888888888776 77788888888 88888888888
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=7.3e-15 Score=171.17 Aligned_cols=253 Identities=21% Similarity=0.214 Sum_probs=147.7
Q ss_pred eeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCC
Q 047503 580 MKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDN 659 (920)
Q Consensus 580 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 659 (920)
-.+|+++++.++.+|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.++.+|.. .++|++|++++|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 4556666666666666554 3666666666666666642 45666777766666666642 34566666666422
Q ss_pred CcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCccc
Q 047503 660 GTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETF 739 (920)
Q Consensus 660 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~ 739 (920)
..+|.. .++|+.|++..+....+.. ..++|+.|+++.|.... ++. ...+|+.|++++|.+..
T Consensus 275 ------~~Lp~l---p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~--Lp~---lp~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 275 ------THLPAL---PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNNQLTS-- 336 (788)
T ss_pred ------hhhhhc---hhhcCEEECcCCccccccc--cccccceeECCCCcccc--CCC---CcccccccccccCcccc--
Confidence 123321 1345555555554221111 23456677666443221 111 12356677777765432
Q ss_pred ccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCc
Q 047503 740 DIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWF 818 (920)
Q Consensus 740 ~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~ 818 (920)
+...|.+|+.|+|+++ +..+|.. .++|+.|++++|.+... + . ..++|+.|+|++|.+.. ++. ..
T Consensus 337 ----LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~L-P-~--l~~~L~~LdLs~N~Lt~-LP~---l~ 401 (788)
T PRK15387 337 ----LPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-P-A--LPSGLKELIVSGNRLTS-LPV---LP 401 (788)
T ss_pred ----ccccccccceEecCCCccCCCCCC---CcccceehhhccccccC-c-c--cccccceEEecCCcccC-CCC---cc
Confidence 2223347788888776 4455542 35677777887776542 1 1 13467888887776542 322 24
Q ss_pred cccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 819 PRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 819 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
++|+.|+++++. +..+|. .+.+|+.|++++|. ++.+|..+..+++|+.|+|+++|
T Consensus 402 s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCc-CCCCCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 678888888764 455543 23467788888776 66788888888888888888876
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=179.05 Aligned_cols=205 Identities=20% Similarity=0.247 Sum_probs=124.4
Q ss_pred cccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCccccccc
Q 047503 665 GVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQS 743 (920)
Q Consensus 665 ~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~ 743 (920)
...+|..++.+.+|+.+....+. ...+..+...++|+.|.+..+. .+.++.....+++|++|+|..|.+....+ ..
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne--l~yip~~le~~~sL~tLdL~~N~L~~lp~-~~ 329 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE--LEYIPPFLEGLKSLRTLDLQSNNLPSLPD-NF 329 (1081)
T ss_pred hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh--hhhCCCcccccceeeeeeehhccccccch-HH
Confidence 34577778888899988887777 5566677777778777766442 23355566677888888888876543321 00
Q ss_pred CCCCc------------------------ccccEEEEeccC---CCCCccccCCCCcceEEEEeeccCCCcccccCCCcc
Q 047503 744 LGSPP------------------------QYLEHLYLVGSM---KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPN 796 (920)
Q Consensus 744 l~~~~------------------------~~L~~L~L~~~~---~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~ 796 (920)
+.... +.|+.|++.++. ..+| .+.++.+|+.|+|++|++...+-..+.+++.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHH
Confidence 00000 134444444431 1223 3455566666666666665555555666666
Q ss_pred cceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCC--ccCcccCCCCCCCEEEE
Q 047503 797 LLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLK--EIPAGIEHLRNLEILKF 874 (920)
Q Consensus 797 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l 874 (920)
|+.|+|++|... .++.....++.|++|...++ .+...| +...+|.|+.++++.|. ++ .+|..... ++|++||+
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdl 483 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDL 483 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeec
Confidence 666666666443 23333445666666666553 344455 66778888888988555 44 33433332 78999999
Q ss_pred ecCh
Q 047503 875 CGML 878 (920)
Q Consensus 875 ~~~~ 878 (920)
+|++
T Consensus 484 SGN~ 487 (1081)
T KOG0618|consen 484 SGNT 487 (1081)
T ss_pred cCCc
Confidence 9987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=8.2e-14 Score=162.45 Aligned_cols=242 Identities=19% Similarity=0.155 Sum_probs=140.7
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccC
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSD 658 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 658 (920)
+|+.|++.+|.++.+|.. +++|++|++++|.++.+|.. .++|++|++++|.+..+|... .+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCc
Confidence 455556665555555532 34556666666655555532 245555666555555555422 345555555542
Q ss_pred CCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcc
Q 047503 659 NGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREET 738 (920)
Q Consensus 659 ~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 738 (920)
+ ..+|.. +++|+.|++..|....+..+ ..+|+.|.++.+... .++. ...+|+.|+|++|.+..
T Consensus 294 L------t~LP~~---p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~--~LP~---lp~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 294 L------TSLPVL---PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLT--SLPT---LPSGLQELSVSDNQLAS- 356 (788)
T ss_pred c------cccccc---ccccceeECCCCccccCCCC--cccccccccccCccc--cccc---cccccceEecCCCccCC-
Confidence 1 123321 23455555555442111111 123445555433221 1221 11478889998886543
Q ss_pred cccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCC
Q 047503 739 FDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGW 817 (920)
Q Consensus 739 ~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 817 (920)
+...+.+|+.|+++++ +..+|.. ..+|+.|+|++|.+...+ . ..++|+.|++++|.+.. ++. .
T Consensus 357 -----LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~Lss-IP~---l 420 (788)
T PRK15387 357 -----LPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTS-LPM---L 420 (788)
T ss_pred -----CCCCCcccceehhhccccccCccc---ccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCC-CCc---c
Confidence 2223448888888876 4556643 357899999999887422 1 23689999999887653 432 3
Q ss_pred ccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCccc
Q 047503 818 FPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGI 863 (920)
Q Consensus 818 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l 863 (920)
+.+|+.|++.++ .++.+|...+.+++|+.|++++|+.-...|..+
T Consensus 421 ~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 467889999886 467788777889999999999998665554444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=2e-13 Score=160.51 Aligned_cols=243 Identities=17% Similarity=0.167 Sum_probs=119.5
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccC
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSD 658 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 658 (920)
+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 34556666666666665442 356666666666666665543 366666666666666665432 356666666542
Q ss_pred CCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcc
Q 047503 659 NGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREET 738 (920)
Q Consensus 659 ~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 738 (920)
. ..+|..+. ++|+.|++..+. .. .++..+. ++|+.|++++|.+...
T Consensus 253 L------~~LP~~l~--s~L~~L~Ls~N~----------------------L~--~LP~~l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 253 I------TELPERLP--SALQSLDLFHNK----------------------IS--CLPENLP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred c------CcCChhHh--CCCCEEECcCCc----------------------cC--ccccccC--CCCcEEECCCCccccC
Confidence 1 12333221 233333333221 10 0111111 2444444444433211
Q ss_pred cccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCC
Q 047503 739 FDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGW 817 (920)
Q Consensus 739 ~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 817 (920)
+ . ..+.+|+.|+++++ +..+|..+ .++|+.|++++|.++..+ ..+ .++|+.|+|++|.+. .++. ..
T Consensus 299 -P-~---~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~-~LP~--~l 365 (754)
T PRK15370 299 -P-A---HLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQIT-VLPE--TL 365 (754)
T ss_pred -c-c---cchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCC-cCCh--hh
Confidence 0 0 01124555555544 23344322 246666666666655422 222 256667777666543 2221 12
Q ss_pred ccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCccc----CCCCCCCEEEEecCh
Q 047503 818 FPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGI----EHLRNLEILKFCGML 878 (920)
Q Consensus 818 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~~~ 878 (920)
.++|+.|++.+|. +..+|... .++|+.|++++|. +..+|..+ ..++++..|++.++|
T Consensus 366 p~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 PPTITTLDVSRNA-LTNLPENL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 3567777777653 44444322 2357777777765 44565543 334667777777776
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=1.1e-14 Score=131.67 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=108.8
Q ss_pred cCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeec
Q 047503 576 EFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 655 (920)
++.++..|-|++|.++.+|..|..+.+|+.|++.+|+++++|.+++.+++|++|+++-|++..+|.+++.+|.|+.|++.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 45666777777777777777777777788888877777778877777788888877777777777777778878777777
Q ss_pred ccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCC
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTS 734 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 734 (920)
+|++.. ..+|..+-.++.|+.|++..++ ...+.+++++++|+.|.+.-+ ..-.++..++.+..|+.|++.+|.
T Consensus 111 ynnl~e----~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 111 YNNLNE----NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccccc----ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--chhhCcHHHHHHHHHHHHhcccce
Confidence 765432 2456666667777777777666 556667777777777776633 222356667777777777777664
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=1.4e-10 Score=145.56 Aligned_cols=298 Identities=18% Similarity=0.182 Sum_probs=181.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC-CCCHHHHHHHHHHHHh
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR-ECMKKDLLIKMIKEFH 250 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~ 250 (920)
.++-|+ +|.+.|... ...+++.|+|++|.||||++.++..+ ++.++|+++.. +-+...+...++..+.
T Consensus 15 ~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 15 NTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 444454 455555433 24789999999999999999998753 23699999964 4466777788888886
Q ss_pred hhccCCccc------cCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch--hhh-HHHHhccCCCCCcEEEEEccchh
Q 047503 251 QLTGQSALG------EMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE--LWG-DVEHALLDNKKGSRIMLTTRHKA 319 (920)
Q Consensus 251 ~~~~~~~~~------~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtR~~~ 319 (920)
.......+. .....+...+...+-..+. +.+++|||||+...+ ... .+...+.....+.++|||||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 432111000 0011122334444444443 578999999997653 223 33333334456678889999842
Q ss_pred hhh--hcccCCccceeecC----CCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCC
Q 047503 320 VAD--FCKQSSFVQVHELE----ALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKH 393 (920)
Q Consensus 320 v~~--~~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~ 393 (920)
-.. .....+ ...++. +|+.+|+.++|........ -.+....|.+.|+|.|+++..++..+....
T Consensus 164 ~~~~~~l~~~~--~~~~l~~~~l~f~~~e~~~ll~~~~~~~~--------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 164 PLGIANLRVRD--QLLEIGSQQLAFDHQEAQQFFDQRLSSPI--------EAAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred CCchHhHHhcC--cceecCHHhCCCCHHHHHHHHHhccCCCC--------CHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 111 111111 345555 9999999999977543211 235567899999999999999887765432
Q ss_pred CChHHHHHHHhccCCCCCCCCchhhHHHHhh-hccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCC
Q 047503 394 GSVSEWRRSLEGLGSKLGSDPHLKICSRVLS-EGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPP 472 (920)
Q Consensus 394 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~ 472 (920)
.+... ....+ ...+ ...+...+. -.++.||++.+..+...|+++ .|+.+ +.. .+..
T Consensus 234 ~~~~~---~~~~~----~~~~-~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~------ 290 (903)
T PRK04841 234 SSLHD---SARRL----AGIN-ASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTG------ 290 (903)
T ss_pred Cchhh---hhHhh----cCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcC------
Confidence 21111 11111 1000 122444333 347899999999999999997 33322 221 1111
Q ss_pred hHHHHHHHHHHHHhccccccc-c-ccCceEecHHHHHHHHHHhh
Q 047503 473 SEQLGEEYLSELIDRSLVHVS-R-RARSCRVHDLMHEIILEKTK 514 (920)
Q Consensus 473 ~e~~~~~~l~~L~~~sll~~~-~-~~~~~~mHdlv~~~~~~~~~ 514 (920)
.+.+...+++|.+.+++... . ....|+.|++++++......
T Consensus 291 -~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 -EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred -CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 12246779999999996543 2 33468899999999887653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=2.3e-12 Score=151.62 Aligned_cols=202 Identities=19% Similarity=0.250 Sum_probs=106.1
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeeccc
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 657 (920)
++|+.|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++|+++.+|..+. ++|++|++++|
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC
Confidence 467777887777777776543 367777887777777777654 467778887777777776553 46777777776
Q ss_pred CCCcccccccccCccCCcccCccccccccCch-hHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQANST-ILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
.+. .+|..+. ++|+.|++..+... .+..+ .++|+.|.++.+.... ++..+. ++|+.|++++|.+.
T Consensus 294 ~Lt------~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~--LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 294 SIR------TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS--LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred ccc------cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc--CChhhc--CcccEEECCCCCCC
Confidence 322 2343332 35666666555421 11111 1345555555322211 222221 45666666655443
Q ss_pred cccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCc---ccccCCCcccceeEEeccc
Q 047503 737 ETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDP---MNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 737 ~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~l~~lp~L~~L~L~~~~ 806 (920)
.. + . ..+++|+.|+|++| +..+|..+. ..|+.|++++|.+...+ +...+.+|++..|+|.+|.
T Consensus 360 ~L-P-~---~lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 360 VL-P-E---TLPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cC-C-h---hhcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 21 1 0 01125566666554 334444332 24555566655554211 1122334555555555543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=2.4e-14 Score=129.52 Aligned_cols=152 Identities=28% Similarity=0.382 Sum_probs=129.0
Q ss_pred cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcE
Q 047503 549 TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQT 628 (920)
Q Consensus 549 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 628 (920)
.+++++..|.+..+. ....+.-+..+++|.+|++.+|+++++|.+|+.++.||.|++.-|.+..+|..++.++-|+.
T Consensus 30 f~~s~ITrLtLSHNK---l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK---LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCc---eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 344555555554432 23334456899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCccc--ccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEE
Q 047503 629 LDLKHSLVT--QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGI 705 (920)
Q Consensus 629 L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l 705 (920)
|||..|++. .+|..+..|..|+-|++++|+ ...+|+.+|++++||.|.+..+. ...+.+++.++.|++|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd------fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND------FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC------cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence 999988665 799999999999999999963 23578899999999999998888 778899999999999999
Q ss_pred EecC
Q 047503 706 QLTN 709 (920)
Q Consensus 706 ~~~~ 709 (920)
..+.
T Consensus 181 qgnr 184 (264)
T KOG0617|consen 181 QGNR 184 (264)
T ss_pred ccce
Confidence 8553
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=6.7e-13 Score=145.14 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=51.5
Q ss_pred hhhhccCCeeeEEEccCCCCC-----cCcccccCcccCceeeecCCCccc-------cCccccCCCCCcEEeecCCccc-
Q 047503 571 TKLVAEFKLMKVLDFEDAPIE-----FLPEEVGNLFHLHYLSVRNTKVKV-------LPKSIGRLLNLQTLDLKHSLVT- 637 (920)
Q Consensus 571 ~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~l~- 637 (920)
...+..+..|++|+++++.+. .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345566666777777777763 344555566667777777665542 2334555667777777666554
Q ss_pred ccchhhccccc---CCeEeeccc
Q 047503 638 QLPVEIKNLKK---LRYLLVYHS 657 (920)
Q Consensus 638 ~lp~~i~~l~~---L~~L~l~~~ 657 (920)
..+..+..+.+ |++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCC
Confidence 23333444433 666666665
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.7e-09 Score=121.73 Aligned_cols=304 Identities=15% Similarity=0.126 Sum_probs=175.7
Q ss_pred CCCccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMI 246 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (920)
.++.++||++++++|...+... ......+.|+|++|+|||++++.++++.......-.+++|++....+...++.+++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4568999999999999998542 22345678999999999999999998633222223466677666667788888998
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch------hhhHHHHhccCCCCCcE--EEEEcc
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE------LWGDVEHALLDNKKGSR--IMLTTR 316 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtR 316 (920)
.++.... .+ ....+..++...+.+.+. +++.+||||+++... .+..+...+... .+++ +|.++.
T Consensus 108 ~~l~~~~---~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 108 RQLFGHP---PP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHhcCCC---CC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 8886421 11 122345677777888775 356899999998642 222332222222 2333 566666
Q ss_pred chhhhhhcc----cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCC-hhHHHHHHHHHHHhCCchHHHHHHHhhh--
Q 047503 317 HKAVADFCK----QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCP-PELEKLSHEIVAKCGGLPLAIVAVGGLL-- 389 (920)
Q Consensus 317 ~~~v~~~~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~-~~l~~~~~~I~~~c~glPlai~~~~~~l-- 389 (920)
...+..... .......+.+.+++.++..+++...+.........+ ..++.+++......|..+.|+..+-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 544332211 111124678999999999999998763221111122 2233333333333466777777765432
Q ss_pred c--CC-C-CChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhccCCC--CceechhhHHHH--HHH
Q 047503 390 S--TK-H-GSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQ--GYSISCARLIRL--WIA 461 (920)
Q Consensus 390 ~--~~-~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~--~~~i~~~~li~~--W~a 461 (920)
+ .. . -+.++...+++... .....-.+..||.+.|..+..++..-+ ...+...++... .++
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 1 11 1 13455655555331 122344678999988777665553321 123444444422 222
Q ss_pred cCCccCCCCCChHHHHHHHHHHHHhccccccc
Q 047503 462 EGFVPYSTRPPSEQLGEEYLSELIDRSLVHVS 493 (920)
Q Consensus 462 ~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~ 493 (920)
+.+-. ..........|+..|...++|...
T Consensus 330 ~~~~~---~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 330 EELGY---EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHcCC---CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 21110 011123456688999999998764
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=4e-12 Score=139.00 Aligned_cols=89 Identities=20% Similarity=-0.041 Sum_probs=41.9
Q ss_pred cccCCCCcceEEEEeeccCCCcccccC-----CCcccceeEEecccCCCe----eeEccCCccccceeeeccCCCCce--
Q 047503 766 WIFKLKNLVRIGLYWSELTNDPMNVLQ-----ALPNLLELRLRDAYDYEK----LHFKDGWFPRLQRLVLLDLKGVTL-- 834 (920)
Q Consensus 766 ~~~~l~~L~~L~L~~~~l~~~~~~~l~-----~lp~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~-- 834 (920)
.+..+++|+.|++++|.+.+..+..+. ..+.|+.|++++|.+.+. +......+++|++|+++++..-+.
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 344556666666666665542222211 135666666666554311 111122345666666666532221
Q ss_pred --eeEcCCCC-ccccEEEEecCC
Q 047503 835 --MMIDKGAM-PCLRELKIGPCP 854 (920)
Q Consensus 835 --~~~~~~~~-~~L~~L~l~~c~ 854 (920)
.......+ +.|+.|++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 11112233 566666666554
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.18 E-value=7e-09 Score=115.39 Aligned_cols=307 Identities=16% Similarity=0.127 Sum_probs=175.7
Q ss_pred CCccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-CCC---CceEEEEeCCCCCHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVM-NHF---DCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~~~~ 243 (920)
++.++||++++++|..+|... +.....+.|+|++|+|||++++.++++.... ... -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 458999999999999998752 2234578999999999999999999852111 111 1467777777667788999
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch-hhhHHHHhccC-----CC--CCcEEEE
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE-LWGDVEHALLD-----NK--KGSRIML 313 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~-~~~~l~~~l~~-----~~--~gs~iiv 313 (920)
.+++++.. .+...+ ....+..++...+.+.+. +++++||||+++... ..+.+...+.. .. ....+|.
T Consensus 94 ~i~~~l~~-~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 94 ELANQLRG-SGEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHhh-cCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 99999853 111111 122344556666666664 567899999998762 22222222111 11 2234455
Q ss_pred Eccchhhhhh----cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHhh
Q 047503 314 TTRHKAVADF----CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGGL 388 (920)
Q Consensus 314 TtR~~~v~~~----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~~ 388 (920)
+|........ .........+.++|.+.++..+++...+.....+....++..+....++....|.|- |+..+-..
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5544332211 111111246889999999999999988642111112333444455567777778874 43333221
Q ss_pred h----cCC--CCChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhccCC--CCceechhhHHHHHH
Q 047503 389 L----STK--HGSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFP--QGYSISCARLIRLWI 460 (920)
Q Consensus 389 l----~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp--~~~~i~~~~li~~W~ 460 (920)
. ..+ .-+.++...+.+.+. .....-++..||.+.+..+..++..- .+..+...++...+-
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 111 113444444443321 12233456788988876665554221 334456666665331
Q ss_pred --HcCCccCCCCCChHHHHHHHHHHHHhcccccccc
Q 047503 461 --AEGFVPYSTRPPSEQLGEEYLSELIDRSLVHVSR 494 (920)
Q Consensus 461 --a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (920)
++. +. -..........++..|...+++....
T Consensus 319 ~~~~~-~~--~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCED-IG--VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHh-cC--CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 121 11 11233566778899999999998753
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=2.4e-11 Score=145.32 Aligned_cols=266 Identities=23% Similarity=0.276 Sum_probs=162.3
Q ss_pred cccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCC--CCcCcc-cccCcccCceeeecCC-CccccCccccC
Q 047503 547 EWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAP--IEFLPE-EVGNLFHLHYLSVRNT-KVKVLPKSIGR 622 (920)
Q Consensus 547 ~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~~~lp~-~i~~l~~L~~L~L~~~-~i~~lp~~i~~ 622 (920)
.......+|...+.++..... .. -..++.|+.|-+.+|. +..++. .+..+++|+.|+|++| .+..||++|+.
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~---~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHI---AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccchhheeEEEEeccchhhc---cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 344556667776665543211 11 1344578888888886 555553 4777999999999975 57799999999
Q ss_pred CCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC----chhHHhcccCC
Q 047503 623 LLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN----STILKELRKLR 698 (920)
Q Consensus 623 L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~----~~~~~~l~~l~ 698 (920)
|.+|++|+++++.+..+|.++.+|.+|.||++..+. ....+|..+..|++|++|.+.... .....++..+.
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~-----~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG-----RLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheecccccc-----ccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 999999999999999999999999999999998752 122234344558888888877654 34455566666
Q ss_pred CCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEE
Q 047503 699 QLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIG 777 (920)
Q Consensus 699 ~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~ 777 (920)
+|+.+.+..... .+...+..+..|.++. +.+.+.++ ....+..+..+++|+.|.
T Consensus 669 ~L~~ls~~~~s~---~~~e~l~~~~~L~~~~----------------------~~l~~~~~~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 669 HLENLSITISSV---LLLEDLLGMTRLRSLL----------------------QSLSIEGCSKRTLISSLGSLGNLEELS 723 (889)
T ss_pred chhhheeecchh---HhHhhhhhhHHHHHHh----------------------HhhhhcccccceeecccccccCcceEE
Confidence 666666552211 1111122222222211 11111111 122344566678888888
Q ss_pred EEeeccCCCcccccC------CCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccE
Q 047503 778 LYWSELTNDPMNVLQ------ALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRE 847 (920)
Q Consensus 778 L~~~~l~~~~~~~l~------~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 847 (920)
+.+|.+......... .+|+|..+.+.+|.....+.. ....|+|+.|.+.+|..++++......+..++.
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch-hhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 888876543332211 144555555555554443322 245789999999999888776544444444443
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=6e-09 Score=110.60 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=112.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..++.|+|++|+|||||++.+++.... ..+ .++|+ +....+..+++..+...++... ...+...+...+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~--------~~~~~~~~~~~l 111 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLET--------EGRDKAALLREL 111 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCC--------CCCCHHHHHHHH
Confidence 468999999999999999999986321 111 22343 3334567778878877765431 111223333333
Q ss_pred HHH----h-cCCcEEEEEEcCCCch--hhhHHHHhcc---CCCCCcEEEEEccchhhhhhccc-------CCccceeecC
Q 047503 274 RQY----L-HDKNYMIVLDDVWKIE--LWGDVEHALL---DNKKGSRIMLTTRHKAVADFCKQ-------SSFVQVHELE 336 (920)
Q Consensus 274 ~~~----L-~~kr~LlVlDdv~~~~--~~~~l~~~l~---~~~~gs~iivTtR~~~v~~~~~~-------~~~~~~~~l~ 336 (920)
.+. . .+++.++|+||++... .++.+..... +......|++|....- ...... ......+.++
T Consensus 112 ~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 112 EDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred HHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCC
Confidence 332 2 5688999999998864 4555543221 1222335566665432 211110 0012467899
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhh
Q 047503 337 ALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLL 389 (920)
Q Consensus 337 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l 389 (920)
+++.+|..+++...+...... ....-..+..+.|++.++|.|..++.++..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999998876433210 1112235788999999999999999998866
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=1.6e-12 Score=133.24 Aligned_cols=130 Identities=22% Similarity=0.328 Sum_probs=96.1
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecC-CCccccCcc-ccCCCCCc
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRN-TKVKVLPKS-IGRLLNLQ 627 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~~-i~~L~~L~ 627 (920)
+|.=.+.+-++.+.+ ..+++..|+.++.||+|||++|.|+.+ |+.+..+..|-.|-+.+ |+|+.+|.. +++|..|+
T Consensus 65 LP~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 333334444444332 457788999999999999999999966 78899999888777666 899999976 67899999
Q ss_pred EEeecCCcccccch-hhcccccCCeEeecccCCCcccccccccC-ccCCcccCccccccccC
Q 047503 628 TLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 628 ~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~ 687 (920)
.|.+.-|++.-++. .+..|++|..|.+.+|.. ..++. .+..+.+++++.+..+.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~------q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKI------QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhh------hhhccccccchhccchHhhhcCc
Confidence 99998888876554 588999999999988632 23443 35667777777665443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=8.2e-12 Score=128.12 Aligned_cols=122 Identities=20% Similarity=0.313 Sum_probs=83.6
Q ss_pred eeeEEEccCCCCCcCc-ccccCcccCceeeecCCCcccc-CccccCCCCCcEEeecC-Ccccccchh-hcccccCCeEee
Q 047503 579 LMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKH-SLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~l 654 (920)
.-..++|+.|.|+.+| ..++.+++||.|+|++|.|+.+ |..+..|.+|.+|-+.+ |+|+.+|.+ |..|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3456788888888887 5688888999999999988866 67788888888887766 789988875 788888888877
Q ss_pred cccCCCcccccccc-cCccCCcccCccccccccCchhH-H-hcccCCCCcEEEEE
Q 047503 655 YHSDNGTHERGVKI-QEGFGSLTDLQKLYIVQANSTIL-K-ELRKLRQLRKLGIQ 706 (920)
Q Consensus 655 ~~~~~~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~-~-~l~~l~~L~~L~l~ 706 (920)
.-|. ...+ ...+..+++|..|.++.+....+ . .+..+..++.+.+.
T Consensus 148 Nan~------i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 148 NANH------INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred Chhh------hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 6542 1222 23356677777777766552221 1 34444555544443
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.08 E-value=8.1e-10 Score=114.71 Aligned_cols=202 Identities=18% Similarity=0.138 Sum_probs=102.9
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH-------
Q 047503 173 VVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKM------- 245 (920)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i------- 245 (920)
|+||++++++|.+++..+. ...+.|+|+.|+|||+|++++.+. .+..-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHHHHHH
Confidence 6899999999999998764 578999999999999999999885 2221124555555444322 222222
Q ss_pred ---HHHHhhhccCCccc---cCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch-h-------hhHHHHhcc---CCC
Q 047503 246 ---IKEFHQLTGQSALG---EMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE-L-------WGDVEHALL---DNK 306 (920)
Q Consensus 246 ---~~~l~~~~~~~~~~---~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~-~-------~~~l~~~l~---~~~ 306 (920)
...+.......... .............+.+.+. +++.+||+||+.... . ...+...+. ...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 12222211110000 0000111222333333332 356999999996654 1 112333332 233
Q ss_pred CCcEEEEEccchhhhhh-cc----cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 307 KGSRIMLTTRHKAVADF-CK----QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 307 ~gs~iivTtR~~~v~~~-~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
+.+.| +++........ .. .......+.+++|+.+++++++...+... . .. +.-.+..++|+..+||+|..
T Consensus 156 ~~~~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 156 NVSIV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp TEEEE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHHTT-HHH
T ss_pred CceEE-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHHHHHHHHHHhCCCHHH
Confidence 34444 44444333322 11 11122459999999999999999975433 1 11 22345669999999999998
Q ss_pred HHH
Q 047503 382 IVA 384 (920)
Q Consensus 382 i~~ 384 (920)
|..
T Consensus 231 l~~ 233 (234)
T PF01637_consen 231 LQE 233 (234)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.2e-11 Score=122.11 Aligned_cols=195 Identities=23% Similarity=0.208 Sum_probs=128.4
Q ss_pred CCcEEeecCCccc--ccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcE
Q 047503 625 NLQTLDLKHSLVT--QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRK 702 (920)
Q Consensus 625 ~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~ 702 (920)
.||+|||+++.++ ++-..++.+.+|+.|.+.++.+. ......+.+-.+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---------------------------D~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---------------------------DPIVNTIAKNSNLVR 238 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---------------------------cHHHHHHhcccccee
Confidence 4677777766555 44445677777777777664111 223445666677888
Q ss_pred EEEE-ecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCC-----CCccccCCCCcceE
Q 047503 703 LGIQ-LTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKN-----LPDWIFKLKNLVRI 776 (920)
Q Consensus 703 L~l~-~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-----lp~~~~~l~~L~~L 776 (920)
|+++ +++....++...+.+++.|..|+|++|........-.+.....+|..|+|+|+... +..-...+|+|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 8888 66777667777888999999999999977655432333344458999999997432 22233568999999
Q ss_pred EEEee-ccCCCcccccCCCcccceeEEecccCCC-eeeEccCCccccceeeeccCCCCceeeEcCCCCcccc
Q 047503 777 GLYWS-ELTNDPMNVLQALPNLLELRLRDAYDYE-KLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLR 846 (920)
Q Consensus 777 ~L~~~-~l~~~~~~~l~~lp~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 846 (920)
+|++| .++.+....+-.++.|++|.|+.|+... +........|+|.+|++.+|-.-+........+|+|+
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 99988 4555566677788888888888887542 2223345677777777777654333333233444443
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=2.9e-08 Score=107.35 Aligned_cols=282 Identities=16% Similarity=0.086 Sum_probs=153.7
Q ss_pred CccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
.+|+|+++.+++|..++... ......+.++|++|+|||+||+.+++. ....| ..+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHHH
Confidence 47999999999999988642 223556889999999999999999885 22222 12221111111 12222222
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcccC
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQS 327 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 327 (920)
.+.... --.-+++...+ ......+...+.+.+..+|+|+..+...|.. .+ .+.+-|..||+...+......-
T Consensus 78 ~~~~~~-vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGD-VLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCC-EEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhh
Confidence 221110 00000111122 1233455666666666677776655543321 11 1245666777765544322111
Q ss_pred CccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHHhccC
Q 047503 328 SFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLEGLG 407 (920)
Q Consensus 328 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~~~~ 407 (920)
....+.+++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..+...+ |..+... .
T Consensus 150 -~~~~~~l~~l~~~e~~~il~~~~~~~~~-----~~~~~al~~ia~~~~G~pR~~~~ll~~~---------~~~a~~~-~ 213 (305)
T TIGR00635 150 -FGIILRLEFYTVEELAEIVSRSAGLLNV-----EIEPEAALEIARRSRGTPRIANRLLRRV---------RDFAQVR-G 213 (305)
T ss_pred -cceEEEeCCCCHHHHHHHHHHHHHHhCC-----CcCHHHHHHHHHHhCCCcchHHHHHHHH---------HHHHHHc-C
Confidence 1256899999999999999988754321 1124567889999999996655444322 2111100 0
Q ss_pred CCCCCCCchhhHHHHhhhccCCChhhHHHHHh-hhccCCCCceechhhHHHHHHHcCCccCCCCCChHHHHHHHHH-HHH
Q 047503 408 SKLGSDPHLKICSRVLSEGYHDLPHHLKSCLL-YFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQLGEEYLS-ELI 485 (920)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl-~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~l~-~L~ 485 (920)
...............+...|..++.+.+..+. .++.++.+ .+..+.+-... | .....++..++ .|+
T Consensus 214 ~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li 281 (305)
T TIGR00635 214 QKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLL 281 (305)
T ss_pred CCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHH
Confidence 00001111122333356678889888777666 44666543 44443333222 1 12344566677 699
Q ss_pred hcccccccc
Q 047503 486 DRSLVHVSR 494 (920)
Q Consensus 486 ~~sll~~~~ 494 (920)
+.+||+...
T Consensus 282 ~~~li~~~~ 290 (305)
T TIGR00635 282 QIGFLQRTP 290 (305)
T ss_pred HcCCcccCC
Confidence 999997554
No 33
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=4.7e-09 Score=102.41 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=88.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNH----FDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLI 270 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 270 (920)
+++.|+|.+|+||||+++.++.+...... +...+|++.......... ..+...+....... . ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~----~-----~~~~ 70 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPES----I-----APIE 70 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccc----h-----hhhH
Confidence 58999999999999999999876332222 456777777655433221 22222222211110 0 0111
Q ss_pred HHHHHHh-cCCcEEEEEEcCCCchh---------hhHHHH-hccC-CCCCcEEEEEccchhhhhhcccCCccceeecCCC
Q 047503 271 IAVRQYL-HDKNYMIVLDDVWKIEL---------WGDVEH-ALLD-NKKGSRIMLTTRHKAVADFCKQSSFVQVHELEAL 338 (920)
Q Consensus 271 ~~l~~~L-~~kr~LlVlDdv~~~~~---------~~~l~~-~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L 338 (920)
..+...+ ..++++||+|++++... +..+.. .+.. ...+++++||+|................+++.+|
T Consensus 71 ~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 71 ELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred HHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 1222222 56899999999976532 223332 3333 3568999999999876432222222267999999
Q ss_pred CHHHHHHHHHHHh
Q 047503 339 PAVEAWRLFCRKA 351 (920)
Q Consensus 339 ~~~~~~~Lf~~~~ 351 (920)
++++..+++.+..
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999997764
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=4.9e-11 Score=123.67 Aligned_cols=296 Identities=20% Similarity=0.197 Sum_probs=158.6
Q ss_pred CeeeEEEccCCCCC---cCcccccCcccCceeeecCCC-cc-ccCccc-cCCCCCcEEeecCC-cccc--cchhhccccc
Q 047503 578 KLMKVLDFEDAPIE---FLPEEVGNLFHLHYLSVRNTK-VK-VLPKSI-GRLLNLQTLDLKHS-LVTQ--LPVEIKNLKK 648 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~---~lp~~i~~l~~L~~L~L~~~~-i~-~lp~~i-~~L~~L~~L~L~~~-~l~~--lp~~i~~l~~ 648 (920)
..|+.|.+.|+.-. .+-....++++++.|++.++. ++ ..-.++ ..+++|++|++..| .++. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35777777777532 222334456666666666653 22 111122 25677777777765 5552 2223456777
Q ss_pred CCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhc----ccCCCCcEEEEE-ecCCcchhHHHHhccCC
Q 047503 649 LRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKEL----RKLRQLRKLGIQ-LTNDDGKNLCASIADME 723 (920)
Q Consensus 649 L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l----~~l~~L~~L~l~-~~~~~~~~l~~~l~~~~ 723 (920)
|++|++++|...... .+......+.+++.+...+|.......+ +.+..+-++++. ++..+.+.+...-..+.
T Consensus 218 L~~lNlSwc~qi~~~---gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGN---GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcC---cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 777777776332211 1111122333444444443332222211 122223333333 22223333333333444
Q ss_pred CCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeec-cCCCccccc-CCCcccceeE
Q 047503 724 NLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSE-LTNDPMNVL-QALPNLLELR 801 (920)
Q Consensus 724 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~~~~~~l-~~lp~L~~L~ 801 (920)
.|+.|..+++.......+..++. ++++|+.|.|+.|+ +++.....+ .+.+.|+.|+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~----------------------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQ----------------------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhc----------------------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 55555555544333333333333 34555555555553 222222222 2456666666
Q ss_pred EecccCCCe--eeEccCCccccceeeeccCCCCcee-----eEcCCCCccccEEEEecCCCCC-ccCcccCCCCCCCEEE
Q 047503 802 LRDAYDYEK--LHFKDGWFPRLQRLVLLDLKGVTLM-----MIDKGAMPCLRELKIGPCPLLK-EIPAGIEHLRNLEILK 873 (920)
Q Consensus 802 L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~ 873 (920)
+.++..+.. +......+|.|+.|.++.|...++- .....++..|+.|++.+||.+. .....+..|++|+.++
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 665533211 2222346778888888877655543 2233567889999999999765 3445678899999999
Q ss_pred EecChHHHHHhcccccccceeeccceEEEe
Q 047503 874 FCGMLTVIASMIDDANWQKIIELVPCVFVS 903 (920)
Q Consensus 874 l~~~~~~~~~~~~~~~~~~~~~~ip~i~~~ 903 (920)
+.+|.....+.+... ..|.|+|+++
T Consensus 433 l~~~q~vtk~~i~~~-----~~~lp~i~v~ 457 (483)
T KOG4341|consen 433 LIDCQDVTKEAISRF-----ATHLPNIKVH 457 (483)
T ss_pred eechhhhhhhhhHHH-----HhhCccceeh
Confidence 999987777777664 7889999886
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.91 E-value=2.6e-07 Score=105.35 Aligned_cols=298 Identities=18% Similarity=0.219 Sum_probs=189.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHhhhccCCc-
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE-CMKKDLLIKMIKEFHQLTGQSA- 257 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~- 257 (920)
+.++++.|.... +.+++.|..++|.|||||+.+... ....=..++|.++.++ -++..++..++..+.......-
T Consensus 24 R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 456666666553 589999999999999999999875 1222346999998765 4678888888888875422110
Q ss_pred -----cccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCc--hhhh-HHHHhccCCCCCcEEEEEccchhhhhhcccC
Q 047503 258 -----LGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKI--ELWG-DVEHALLDNKKGSRIMLTTRHKAVADFCKQS 327 (920)
Q Consensus 258 -----~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~--~~~~-~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 327 (920)
.+.-...+...+...+...+. .++..+||||..-. ...+ .+...+.....+-.+|||||+.--.......
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 001112234556666666554 36899999998644 2233 3333444566788999999987422110000
Q ss_pred CccceeecC----CCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHH
Q 047503 328 SFVQVHELE----ALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSL 403 (920)
Q Consensus 328 ~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~ 403 (920)
-....++++ .++.+|+-++|....... -.+..++.+.+..+|-+-|+..++-.++++.. .+.-...+
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~-~~q~~~~L 250 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLP--------LDAADLKALYDRTEGWAAALQLIALALRNNTS-AEQSLRGL 250 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCC--------CChHHHHHHHhhcccHHHHHHHHHHHccCCCc-HHHHhhhc
Confidence 000223332 489999999998875222 22456788999999999999999988883322 33222222
Q ss_pred hccCCCCCCCCchhhHHH-HhhhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCChHHHHHHHHH
Q 047503 404 EGLGSKLGSDPHLKICSR-VLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQLGEEYLS 482 (920)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~l~ 482 (920)
... .+.+.. ...--++.||+++|..++-||+++.-. ..|+..- +-++.+...++
T Consensus 251 sG~---------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~L------------tg~~ng~amLe 305 (894)
T COG2909 251 SGA---------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNAL------------TGEENGQAMLE 305 (894)
T ss_pred cch---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHH------------hcCCcHHHHHH
Confidence 110 111111 122346789999999999999986532 2233221 12344667899
Q ss_pred HHHhccccccc--cccCceEecHHHHHHHHHHhhc
Q 047503 483 ELIDRSLVHVS--RRARSCRVHDLMHEIILEKTKD 515 (920)
Q Consensus 483 ~L~~~sll~~~--~~~~~~~mHdlv~~~~~~~~~~ 515 (920)
+|..++++-.. +...-|+.|.+..||.+..-..
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99999988643 2556799999999998776554
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.90 E-value=1.1e-07 Score=103.49 Aligned_cols=282 Identities=17% Similarity=0.104 Sum_probs=150.1
Q ss_pred CccccchhhHHHHHHHHhc---CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVN---GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
.+|+|+++.++.+..++.. .......+.|+|++|+||||||+.+++. ....+ .++... .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence 5799999999999888764 2334567889999999999999999885 22221 122211 1122222222222
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcccC
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQS 327 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 327 (920)
.+.... --.-+++...+ ....+.+...+.+.+..+|+|+..+...+. ..+ ...+-|..||+...+......-
T Consensus 99 ~l~~~~-vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGD-VLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCC-EEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHHHHh
Confidence 221100 00000111111 112233444444555555555544332111 011 1245566677755443322111
Q ss_pred CccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHHhccC
Q 047503 328 SFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLEGLG 407 (920)
Q Consensus 328 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~~~~ 407 (920)
....+++++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..+...+ ..|.....
T Consensus 171 -f~~~~~l~~~~~~e~~~il~~~~~~~~~-----~~~~~~~~~ia~~~~G~pR~a~~~l~~~-------~~~a~~~~--- 234 (328)
T PRK00080 171 -FGIVQRLEFYTVEELEKIVKRSARILGV-----EIDEEGALEIARRSRGTPRIANRLLRRV-------RDFAQVKG--- 234 (328)
T ss_pred -cCeeeecCCCCHHHHHHHHHHHHHHcCC-----CcCHHHHHHHHHHcCCCchHHHHHHHHH-------HHHHHHcC---
Confidence 1256899999999999999988754321 1223578899999999996444444322 22222110
Q ss_pred CCCCCCCchhhHHHHhhhccCCChhhHHHHHh-hhccCCCCceechhhHHHHHHHcCCccCCCCCChHHHHHHHHH-HHH
Q 047503 408 SKLGSDPHLKICSRVLSEGYHDLPHHLKSCLL-YFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQLGEEYLS-ELI 485 (920)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl-~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~l~-~L~ 485 (920)
...-...........+...+..|+...+..+. ....|+.+ .+..+.+-... . ...+.++..++ .|+
T Consensus 235 ~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g-----~~~~~~~~~~e~~Li 302 (328)
T PRK00080 235 DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G-----EERDTIEDVYEPYLI 302 (328)
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C-----CCcchHHHHhhHHHH
Confidence 00011111223445566778889887777774 66677765 45554443222 1 11233444455 788
Q ss_pred hcccccccc
Q 047503 486 DRSLVHVSR 494 (920)
Q Consensus 486 ~~sll~~~~ 494 (920)
+.+|++...
T Consensus 303 ~~~li~~~~ 311 (328)
T PRK00080 303 QQGFIQRTP 311 (328)
T ss_pred HcCCcccCC
Confidence 888887554
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.5e-10 Score=124.30 Aligned_cols=158 Identities=24% Similarity=0.309 Sum_probs=134.3
Q ss_pred hhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhccccc
Q 047503 569 FMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKK 648 (920)
Q Consensus 569 ~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~ 648 (920)
.++.-+..|-.|..|.|..|.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+++|+++.+|..++.++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchh
Confidence 34455677778888999999999999999999999999999999999999998776 89999999999999999999999
Q ss_pred CCeEeecccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCE
Q 047503 649 LRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLES 727 (920)
Q Consensus 649 L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~ 727 (920)
|.+|+.+.| ....+|..++.+++|+.|.+..+. ...+.++..| .|.+|++++|+... +|..+.+|.+|+.
T Consensus 168 l~~ld~s~n------ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~--iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 168 LAHLDVSKN------EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY--LPVDFRKMRHLQV 238 (722)
T ss_pred HHHhhhhhh------hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceee--cchhhhhhhhhee
Confidence 999999886 345688889999999999988888 6677888855 47888888776544 7888999999999
Q ss_pred EEEeeCCCC
Q 047503 728 LTVESTSRE 736 (920)
Q Consensus 728 L~L~~~~~~ 736 (920)
|.|.+|.+.
T Consensus 239 l~LenNPLq 247 (722)
T KOG0532|consen 239 LQLENNPLQ 247 (722)
T ss_pred eeeccCCCC
Confidence 999988654
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.80 E-value=7.2e-10 Score=112.79 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=142.6
Q ss_pred hhhccCCeeeEEEccCCCCC-----cCcccccCcccCceeeecCC--C--ccccCcc-------ccCCCCCcEEeecCCc
Q 047503 572 KLVAEFKLMKVLDFEDAPIE-----FLPEEVGNLFHLHYLSVRNT--K--VKVLPKS-------IGRLLNLQTLDLKHSL 635 (920)
Q Consensus 572 ~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~--~--i~~lp~~-------i~~L~~L~~L~L~~~~ 635 (920)
.....+..+..|+|+||.+. .+.+.+.+.++|+..+++.- . ..++|+. +..+++|++||||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 44577889999999999875 34455667778888888862 1 2255554 4467899999999996
Q ss_pred cc--cc---chhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEec--
Q 047503 636 VT--QL---PVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLT-- 708 (920)
Q Consensus 636 l~--~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-- 708 (920)
+. .+ -..+.++..|+||++.+|+++... +..+.. .|..|. .....+.-++|+.+....|
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a-g~~l~~------al~~l~-------~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA-GGRLGR------ALFELA-------VNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhH-HHHHHH------HHHHHH-------HHhccCCCcceEEEEeecccc
Confidence 55 22 234678899999999998654321 111110 112221 1112334456666666533
Q ss_pred -CCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCC-
Q 047503 709 -NDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTND- 786 (920)
Q Consensus 709 -~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~- 786 (920)
+.....+...+...+.|+.+.+..|.....-. . -+-..+.++++|+.|+|.+|.++..
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~----~----------------al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV----T----------------ALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchh----H----------------HHHHHHHhCCcceeeecccchhhhHH
Confidence 22334556667777788888887775432100 0 0111344556666666666655432
Q ss_pred ---cccccCCCcccceeEEecccCCCeee-----EccCCccccceeeeccCCCCce----eeEcCCCCccccEEEEecCC
Q 047503 787 ---PMNVLQALPNLLELRLRDAYDYEKLH-----FKDGWFPRLQRLVLLDLKGVTL----MMIDKGAMPCLRELKIGPCP 854 (920)
Q Consensus 787 ---~~~~l~~lp~L~~L~L~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~ 854 (920)
.-..+..+|+|+.|++++|.....-. .-...+|+|+.|.+.+|..-.. +.......|.|++|+|++|.
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 12234455666666666554332211 0113477777777777643222 11123347888888888887
Q ss_pred C
Q 047503 855 L 855 (920)
Q Consensus 855 ~ 855 (920)
.
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 4
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.4e-09 Score=109.37 Aligned_cols=182 Identities=19% Similarity=0.120 Sum_probs=97.0
Q ss_pred cCcccCceeeecCCCccccCc--cccCCCCCcEEeecCCccc---ccchhhcccccCCeEeecccCCCcccccccccCcc
Q 047503 598 GNLFHLHYLSVRNTKVKVLPK--SIGRLLNLQTLDLKHSLVT---QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGF 672 (920)
Q Consensus 598 ~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i 672 (920)
.++..|+...|.++.+...+. ....|++++.|||+.|-+. .+...+..||+|+.|+++.|.+..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--------- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--------- 188 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc---------
Confidence 456667777777777666653 4556788888888877443 44455667888888888776322111
Q ss_pred CCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCccccc
Q 047503 673 GSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLE 752 (920)
Q Consensus 673 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 752 (920)
+ +..+ ..+++|+.|.++-++.+.......+..+|+|+.|.|..|...... -... ..++.|+
T Consensus 189 ~---s~~~--------------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~-~i~~~L~ 249 (505)
T KOG3207|consen 189 S---SNTT--------------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATST-KILQTLQ 249 (505)
T ss_pred c---ccch--------------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchh-hhhhHHh
Confidence 0 0000 133456666666444445555566666777777777776421110 0011 1122556
Q ss_pred EEEEecc-CCCCC--ccccCCCCcceEEEEeeccCCCcccc------cCCCcccceeEEecccC
Q 047503 753 HLYLVGS-MKNLP--DWIFKLKNLVRIGLYWSELTNDPMNV------LQALPNLLELRLRDAYD 807 (920)
Q Consensus 753 ~L~L~~~-~~~lp--~~~~~l~~L~~L~L~~~~l~~~~~~~------l~~lp~L~~L~L~~~~~ 807 (920)
+|+|+++ .-.++ ...+.++.|+.|+++.|.+.....+. ...+|+|+.|++..|.+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 6666654 22222 23455666666666666554422221 23355555555554443
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=1.3e-08 Score=97.71 Aligned_cols=106 Identities=23% Similarity=0.327 Sum_probs=33.4
Q ss_pred cCCeeeEEEccCCCCCcCccccc-CcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhh-cccccCCeEe
Q 047503 576 EFKLMKVLDFEDAPIEFLPEEVG-NLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEI-KNLKKLRYLL 653 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~ 653 (920)
+...+|.|+|.+|.|+.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.++.++..+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4446788888888887663 455 5778888888888888775 5777888888888888888886555 3688888888
Q ss_pred ecccCCCcccccccccCccCCcccCccccccccC
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
+++|...... . -..+..+++|+.|++.++.
T Consensus 95 L~~N~I~~l~---~-l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 95 LSNNKISDLN---E-LEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TTS---SCC---C-CGGGGG-TT--EEE-TT-G
T ss_pred CcCCcCCChH---H-hHHHHcCCCcceeeccCCc
Confidence 8876432211 1 1223445555555555443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2e-09 Score=112.59 Aligned_cols=212 Identities=20% Similarity=0.115 Sum_probs=135.3
Q ss_pred ccccCCCCCcEEeecCCcccccch--hhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcc
Q 047503 618 KSIGRLLNLQTLDLKHSLVTQLPV--EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELR 695 (920)
Q Consensus 618 ~~i~~L~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~ 695 (920)
..-.++.+|+...|.++.+...+. ....|++++.|+|++|.+..+. ....-..
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------------------~v~~i~e 169 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------------------PVLKIAE 169 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-------------------------HHHHHHH
Confidence 344577888888888887776663 5677888888888876332211 1122233
Q ss_pred cCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCC--ccccCCCCc
Q 047503 696 KLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLP--DWIFKLKNL 773 (920)
Q Consensus 696 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp--~~~~~l~~L 773 (920)
.+++|+.|+++-|......-...-..+++|+.|.|++|.+...-....+..+| +|+.|.|.++...+- ....-+..|
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhHH
Confidence 44555555555322111000001125679999999999876332233345566 999999998732111 112346889
Q ss_pred ceEEEEeeccCC-CcccccCCCcccceeEEecccCCCe--ee----EccCCccccceeeeccCCCCceeeE--cCCCCcc
Q 047503 774 VRIGLYWSELTN-DPMNVLQALPNLLELRLRDAYDYEK--LH----FKDGWFPRLQRLVLLDLKGVTLMMI--DKGAMPC 844 (920)
Q Consensus 774 ~~L~L~~~~l~~-~~~~~l~~lp~L~~L~L~~~~~~~~--~~----~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~ 844 (920)
+.|+|++|.+.. +.....+.||.|..|+++.+.+.+- .+ .....||+|++|.+..++ ..+|+. ....+++
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLEN 327 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccch
Confidence 999999997655 4567789999999999998755432 11 113579999999999875 445543 2346789
Q ss_pred ccEEEEecCCCC
Q 047503 845 LRELKIGPCPLL 856 (920)
Q Consensus 845 L~~L~l~~c~~l 856 (920)
|+.|.+..++.-
T Consensus 328 lk~l~~~~n~ln 339 (505)
T KOG3207|consen 328 LKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccccc
Confidence 999998877743
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=3.3e-09 Score=105.10 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=102.4
Q ss_pred ccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC---chhH
Q 047503 615 VLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN---STIL 691 (920)
Q Consensus 615 ~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~---~~~~ 691 (920)
.+|..+.-+.+|+++.++.|.-..+-.....-|.|+.+.+.+.. ....| .+-..+.+..+....-+ +...
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~------~~~~~-~l~pe~~~~D~~~~E~~t~~G~~~ 277 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTT------IQDVP-SLLPETILADPSGSEPSTSNGSAL 277 (490)
T ss_pred ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccc------ccccc-cccchhhhcCccCCCCCccCCceE
Confidence 34555556667777777766544443333334566666665421 11111 11112222222211111 2233
Q ss_pred HhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCC
Q 047503 692 KELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKL 770 (920)
Q Consensus 692 ~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l 770 (920)
......+.|+.|+++.|... .+-.+..-.|.++.|+++.|.... ..++..++ +|++|+|+++ ...+-.|-..+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRT---VQNLAELP-QLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred EecchHhhhhhccccccchh--hhhhhhhhccceeEEeccccceee---ehhhhhcc-cceEeecccchhHhhhhhHhhh
Confidence 34445566777777755322 244555667888888888876543 34555666 8888888887 45666777778
Q ss_pred CCcceEEEEeeccCCCcccccCCCcccceeEEecccC
Q 047503 771 KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYD 807 (920)
Q Consensus 771 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 807 (920)
.|+++|.|+.|.+ ..++.++.|-+|..|++++|.+
T Consensus 352 GNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 352 GNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred cCEeeeehhhhhH--hhhhhhHhhhhheeccccccch
Confidence 8888888888875 3455666777777777776654
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.5e-08 Score=113.98 Aligned_cols=107 Identities=25% Similarity=0.384 Sum_probs=87.7
Q ss_pred hccCCeeeEEEccCCCCCcCcccccCcc-cCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeE
Q 047503 574 VAEFKLMKVLDFEDAPIEFLPEEVGNLF-HLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYL 652 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 652 (920)
+..++.+..|++.++.+..+|..++.+. +|++|++++|.+..+|..+..+++|+.|++++|.+..+|.....+++|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3555789999999999999998888885 999999999999999888999999999999999999999887789999999
Q ss_pred eecccCCCcccccccccCccCCcccCcccccccc
Q 047503 653 LVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQA 686 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~ 686 (920)
++++|. ...+|..++.+..|++|.+..+
T Consensus 192 ~ls~N~------i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNK------ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCc------cccCchhhhhhhhhhhhhhcCC
Confidence 999863 3455655555555666666554
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.67 E-value=3.5e-06 Score=96.97 Aligned_cols=303 Identities=12% Similarity=0.111 Sum_probs=162.3
Q ss_pred CCccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCccc---cCCCC--ceEEEEeCCCCCHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQYV---MNHFD--CRAWITVGRECMKKDL 241 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~~~ 241 (920)
++.+.|||+++++|...|... .....++.|.|.+|.|||+.++.|.+.... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 467899999999999888652 223467889999999999999999875211 11122 2567777666678888
Q ss_pred HHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcC---CcEEEEEEcCCCch--hhhHHHHhcc-CCCCCcEEEE--
Q 047503 242 LIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHD---KNYMIVLDDVWKIE--LWGDVEHALL-DNKKGSRIML-- 313 (920)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~---kr~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iiv-- 313 (920)
+..|.+++... .++ ...+..+....+...+.. ...+||||+++... .-+.+...+. ....+++|+|
T Consensus 834 YqvI~qqL~g~---~P~---~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 834 YQVLYKQLFNK---KPP---NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHcCC---CCC---ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 88888888433 111 222334455555555422 24699999997642 1112222221 1123555544
Q ss_pred Eccchhhh----hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhh
Q 047503 314 TTRHKAVA----DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLL 389 (920)
Q Consensus 314 TtR~~~v~----~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l 389 (920)
+|...... ..+........+...|.+.++..+++.+++.... ..-.+..++-+|+.++...|..=.|+.++-...
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-EIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 33222211 1111111113467799999999999999875421 111222333444444444444456666665554
Q ss_pred cCCCC---ChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhccCCC---CceechhhHHHHH--HH
Q 047503 390 STKHG---SVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQ---GYSISCARLIRLW--IA 461 (920)
Q Consensus 390 ~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~---~~~i~~~~li~~W--~a 461 (920)
..+.. +.++-..+.+.+. ...+.-....||.|.|-.+..+...-+ ...++...+.... ++
T Consensus 987 EikegskVT~eHVrkAleeiE------------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lc 1054 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLF------------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLV 1054 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHH------------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHH
Confidence 32211 1222222222110 111223446788887765554443222 2235544444332 22
Q ss_pred c--C-CccCCCCCChHHHHHHHHHHHHhcccccccc
Q 047503 462 E--G-FVPYSTRPPSEQLGEEYLSELIDRSLVHVSR 494 (920)
Q Consensus 462 ~--g-~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (920)
+ | .+.. ....+ ....++.+|...++|....
T Consensus 1055 e~~Gk~iGv--~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1055 ETSGKYIGM--CSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HhhhhhcCC--CCcHH-HHHHHHHHHHhcCeEEecC
Confidence 2 1 1111 11122 6677888888888887655
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.61 E-value=5.7e-07 Score=100.88 Aligned_cols=176 Identities=22% Similarity=0.195 Sum_probs=103.9
Q ss_pred CccccchhhHHH---HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDI---LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++++|.+..+.. +..++.... ...+.++|++|+||||||+.+++. .... |+.++......+.++++++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH
Confidence 367888877655 777776554 557788999999999999999885 2222 3333322221122222222
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHH-hcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEE--Eccchh--h
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQY-LHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIML--TTRHKA--V 320 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~--v 320 (920)
.. ... ..+++.+|++|+++... ..+.+...+. .|..+++ ||.+.. +
T Consensus 83 ~~------------------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l 135 (413)
T PRK13342 83 EA------------------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEV 135 (413)
T ss_pred HH------------------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhc
Confidence 21 111 14578899999998763 3444444433 2444444 344432 1
Q ss_pred hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 321 ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
...... ....+.+.+++.++.+.++.+.+..... ....-..+....|++.|+|.+..+..+.
T Consensus 136 ~~aL~S--R~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 136 NPALLS--RAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred cHHHhc--cceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 111111 1267899999999999999886533211 0001224567788999999987554443
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=4.2e-09 Score=107.34 Aligned_cols=252 Identities=20% Similarity=0.194 Sum_probs=161.6
Q ss_pred ccccCcccCceeeecCCCcc-----ccCccccCCCCCcEEeecCC---cc-cccchh-------hcccccCCeEeecccC
Q 047503 595 EEVGNLFHLHYLSVRNTKVK-----VLPKSIGRLLNLQTLDLKHS---LV-TQLPVE-------IKNLKKLRYLLVYHSD 658 (920)
Q Consensus 595 ~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~---~l-~~lp~~-------i~~l~~L~~L~l~~~~ 658 (920)
+.+-.+..+.+++|++|.+. .+-+.+.+.++|+..++++- ++ ..+|.. +..+++|+.|+|++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 44566788999999999876 45566778889999999854 22 245543 4567899999999985
Q ss_pred CCcccccccccCccCCcccCccccccccCch-hH-HhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 659 NGTHERGVKIQEGFGSLTDLQKLYIVQANST-IL-KELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 659 ~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~-~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
+++.. .-.+-..|.++++|++|.+.+|+.. .. .-++. -|..| +......+.+.|+.+....|...
T Consensus 104 ~G~~g-~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l----------~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 104 FGPKG-IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFEL----------AVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cCccc-hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHH----------HHHhccCCCcceEEEEeeccccc
Confidence 54321 1112223567888898888887711 11 11111 00000 12233455678999988877543
Q ss_pred cccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcc----cccCCCcccceeEEecccCCCe--
Q 047503 737 ETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPM----NVLQALPNLLELRLRDAYDYEK-- 810 (920)
Q Consensus 737 ~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~lp~L~~L~L~~~~~~~~-- 810 (920)
.... ..+-..+...+.|+.+.+..|.+..... ..+..+|+|+.|+|.+|.++..
T Consensus 171 n~ga--------------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 171 NGGA--------------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred cccH--------------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 2110 0111234456788888888887755433 4577899999999998876533
Q ss_pred --eeEccCCccccceeeeccCCCCceee--E---cCCCCccccEEEEecCCCCC----ccCcccCCCCCCCEEEEecChH
Q 047503 811 --LHFKDGWFPRLQRLVLLDLKGVTLMM--I---DKGAMPCLRELKIGPCPLLK----EIPAGIEHLRNLEILKFCGMLT 879 (920)
Q Consensus 811 --~~~~~~~~~~L~~L~l~~~~~l~~~~--~---~~~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~ 879 (920)
+.-....+|+|+.|++.+|.--..-. + -....|+|+.|.+.+|..-. .+...+...+.|..|+|++|.-
T Consensus 231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22223568899999999985322211 1 12358999999999998543 2333455689999999999863
No 47
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=1.5e-07 Score=86.93 Aligned_cols=123 Identities=23% Similarity=0.275 Sum_probs=83.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
.+++.|.|+.|+|||||+++++++.. ....+++++..+....... . .++.+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------------~-~~~~~~~ 54 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------------D-PDLLEYF 54 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------------h-hhhHHHH
Confidence 46899999999999999999987632 3355777766443111000 0 0023334
Q ss_pred HHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhc---ccCCccceeecCCCCHHHH
Q 047503 274 RQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFC---KQSSFVQVHELEALPAVEA 343 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~---~~~~~~~~~~l~~L~~~~~ 343 (920)
.+....++.+|++|++.....|......+.+.....+|++|+........- ...+....+++.||+-.|.
T Consensus 55 ~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 55 LELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 444444788899999999999998888888766678999999987665321 1122235689999998763
No 48
>PTZ00202 tuzin; Provisional
Probab=98.58 E-value=3.8e-05 Score=82.27 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=106.7
Q ss_pred CCCccccchhhHHHHHHHHhcCC-CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNGR-KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
+...|+||+.+..++...|...+ ...+++.|+|++|+|||||++.+..... ..+++.-.. ...++++.++.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHHHH
Confidence 45689999999999999997532 3456999999999999999999986422 223333333 67899999999
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHh-----c-CCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccch
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYL-----H-DKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
+++... .....++...|.+.+ . +++.+||+-=-+.. ..+.+. ..|.....-|.|++---.+
T Consensus 332 ALGV~p---------~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evple 401 (550)
T PTZ00202 332 ALGVPN---------VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HcCCCC---------cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHh
Confidence 998631 112244555555444 2 56677776533222 123222 2344445567788766555
Q ss_pred hhhhhcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 319 AVADFCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 319 ~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
.........+....|.+++++.++|.++..+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 443322222333689999999999998877654
No 49
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=1.7e-06 Score=104.65 Aligned_cols=295 Identities=16% Similarity=0.210 Sum_probs=166.2
Q ss_pred ccccchhhHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC---CCceEEEEeCCCC---CHHHHHHH
Q 047503 172 EVVGIESARDILIGWLVNG-RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH---FDCRAWITVGREC---MKKDLLIK 244 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~wv~v~~~~---~~~~~~~~ 244 (920)
.++||+.+.+.|.+.+..- .....++.+.|..|||||+|+++|... +.+. |-.-.+-...... .....+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3689999999999988763 234679999999999999999999874 3222 2111111111111 12234555
Q ss_pred HHHHHhhhc---------------------------------cCCcc-ccCCcCCHHH-----HHHHHHHHhc-CCcEEE
Q 047503 245 MIKEFHQLT---------------------------------GQSAL-GEMNNMEEKD-----LIIAVRQYLH-DKNYMI 284 (920)
Q Consensus 245 i~~~l~~~~---------------------------------~~~~~-~~~~~~~~~~-----l~~~l~~~L~-~kr~Ll 284 (920)
++.++.... +.+++ -+........ ....+..... .|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 555552211 10000 0001111111 2223333333 469999
Q ss_pred EEEcC-CCchhhhHHHHhccCCCC-----CcEEEE--EccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCC
Q 047503 285 VLDDV-WKIELWGDVEHALLDNKK-----GSRIML--TTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVS 356 (920)
Q Consensus 285 VlDdv-~~~~~~~~l~~~l~~~~~-----gs~iiv--TtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 356 (920)
|+||+ |-+..--++...+..... ...|.. |.+.. .............+.|.||+..+.-.+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRADTNQLVAATLGCT-- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc--
Confidence 99999 544322222222221110 112222 22222 12222222334789999999999999998876432
Q ss_pred CCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCC-----ChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCCh
Q 047503 357 DGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHG-----SVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLP 431 (920)
Q Consensus 357 ~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 431 (920)
.....+....|++|..|+|+.+.-+-..+....- ....|..-..++. ..+..+.+...+..-.+.||
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~~~vv~~l~~rl~kL~ 307 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATTDAVVEFLAARLQKLP 307 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----CchhhHHHHHHHHHHHhcCC
Confidence 2344578889999999999999999888876421 1233433322221 11222345557888999999
Q ss_pred hhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCChHHHHHHHHHHHHhccccc
Q 047503 432 HHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQLGEEYLSELIDRSLVH 491 (920)
Q Consensus 432 ~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~ 491 (920)
...+...-..|++-. .|+...|-..|. ......+....+.|....++-
T Consensus 308 ~~t~~Vl~~AA~iG~--~F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 308 GTTREVLKAAACIGN--RFDLDTLAALAE----------DSPALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHHHHHHHHHHhCc--cCCHHHHHHHHh----------hchHHHHHHHHHHhHhhceec
Confidence 999999888888854 444555544441 133455555555555544443
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=4e-09 Score=113.61 Aligned_cols=173 Identities=23% Similarity=0.312 Sum_probs=134.2
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeeccc
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 657 (920)
..-...||+.|.+..+|...+.+..|..|.|..|.+..+|..+++|..|.+|||+.|.+..+|..+..|+ |+.|.+++|
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 3345578999999999999999999999999999999999999999999999999999999999998886 999999985
Q ss_pred CCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
....+|..++.+..|..|+.+.|. ...+..++.+..|+.|++.-+. ...++..+..+ .|.+|++++|+.
T Consensus 154 ------kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~--l~~lp~El~~L-pLi~lDfScNki- 223 (722)
T KOG0532|consen 154 ------KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH--LEDLPEELCSL-PLIRLDFSCNKI- 223 (722)
T ss_pred ------ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh--hhhCCHHHhCC-ceeeeecccCce-
Confidence 456789999988889999988887 5667778888888887777332 22244444433 355566655532
Q ss_pred cccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCC
Q 047503 737 ETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTN 785 (920)
Q Consensus 737 ~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 785 (920)
..+|-.|.++..|++|.|.+|.+..
T Consensus 224 ------------------------s~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 ------------------------SYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ------------------------eecchhhhhhhhheeeeeccCCCCC
Confidence 3456666777777777777776654
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.56 E-value=1.1e-06 Score=90.13 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=93.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
.+.+.|+|..|+|||+||+.+++. .......+.|+++... .... . .+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~------------------------~----~~ 85 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFS------------------------P----AV 85 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhh------------------------H----HH
Confidence 357899999999999999999986 3223345677765310 0000 0 11
Q ss_pred HHHhcCCcEEEEEEcCCCc---hhhhH-HHHhccCC-CCCcEEEE-Eccc---------hhhhhhcccCCccceeecCCC
Q 047503 274 RQYLHDKNYMIVLDDVWKI---ELWGD-VEHALLDN-KKGSRIML-TTRH---------KAVADFCKQSSFVQVHELEAL 338 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~~~~l~~L 338 (920)
.+.+. +.-+||+||+|.. ..|+. +...+... ..|+.+|| |+.. +.+...+... ..++++++
T Consensus 86 ~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~p 161 (229)
T PRK06893 86 LENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDL 161 (229)
T ss_pred Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCC
Confidence 11122 3358999999874 45653 33333322 23555654 4443 2344444332 68899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHh
Q 047503 339 PAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGG 387 (920)
Q Consensus 339 ~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~ 387 (920)
+.++.++++++.++... -.--+++..-|++++.|..-++..+-.
T Consensus 162 d~e~~~~iL~~~a~~~~-----l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRG-----IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999886442 112346778889999887655444433
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.54 E-value=9.5e-07 Score=92.55 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=103.8
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 168 IEDDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
+.+.+++|-+..+.+.++ .+ ++.-..++|++|+||||||+.+... ....| ..++-..+-.+-++++++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~~--~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---AG--HLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREIIE 94 (436)
T ss_pred cChHhhhCCCchHHHHHh---cC--CCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHHHH
Confidence 444555665555554443 33 3677789999999999999999884 44443 344444333333444443
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEE--Eccchhhh--
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIML--TTRHKAVA-- 321 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~v~-- 321 (920)
+.. +....|++.+|++|.|..-. +.+. .||.-.+|.-|+| ||-++...
T Consensus 95 ~a~-----------------------~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 95 EAR-----------------------KNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred HHH-----------------------HHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeec
Confidence 321 12234899999999997543 2222 3566667877776 66666432
Q ss_pred hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCC-CChhH-HHHHHHHHHHhCCch
Q 047503 322 DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGG-CPPEL-EKLSHEIVAKCGGLP 379 (920)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~l-~~~~~~I~~~c~glP 379 (920)
....+ ...++++++|+.++-..++.+.+........ ....+ ++....++..++|--
T Consensus 149 ~ALlS--R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 149 PALLS--RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHHhh--hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 22211 2279999999999999999985433221111 11112 345667788888864
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=5.4e-06 Score=89.62 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=116.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC----ccccCCCCceEEEEe-CCCCCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN----QYVMNHFDCRAWITV-GRECMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~v-~~~~~~~~~~~~i 245 (920)
.+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++. .....|+|...|... +......+ ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 367898999999999997654 3568889999999999999998773 123456676666542 22233322 3334
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCC--CchhhhHHHHhccCCCCCcEEEEEccchhhh-h
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVW--KIELWGDVEHALLDNKKGSRIMLTTRHKAVA-D 322 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~ 322 (920)
++.+... -..+++-++|+|+++ +.+.|..+...+.....++.+|++|.+.+.. .
T Consensus 82 ~~~~~~~-----------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 82 IEEVNKK-----------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILD 138 (313)
T ss_pred HHHHhcC-----------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcH
Confidence 3333211 012445566677664 4467889999998888889999888665422 1
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
...+. ...+.+.++++++....+.+...+. . .+.+..++..++|.|.-+..
T Consensus 139 TI~SR--c~~~~~~~~~~~~~~~~l~~~~~~~------~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 139 TIKSR--CQIYKLNRLSKEEIEKFISYKYNDI------K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHhh--ceeeeCCCcCHHHHHHHHHHHhcCC------C---HHHHHHHHHHcCCCHHHHHH
Confidence 11111 2789999999999988776553211 1 23366788899998875543
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=3.8e-08 Score=97.73 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHH-hcccCCCCc
Q 047503 623 LLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILK-ELRKLRQLR 701 (920)
Q Consensus 623 L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~-~l~~l~~L~ 701 (920)
.+.|++|||++|.|+.+..++.-+|+++.|++++|.. .....+..+.+|+.|+++++....+. .-.++.+++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-------~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-------RTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccce-------eeehhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 4567777777777777777777777777777777522 11223556667777777666532222 223556667
Q ss_pred EEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc
Q 047503 702 KLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS 759 (920)
Q Consensus 702 ~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 759 (920)
+|.+.-|.. .-.+.+.++.+|..|++.+|+.........++.+| +|+.|.|.++
T Consensus 356 tL~La~N~i---E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~N 409 (490)
T KOG1259|consen 356 TLKLAQNKI---ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGN 409 (490)
T ss_pred eeehhhhhH---hhhhhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCC
Confidence 777663311 11234556667777888777654433344455555 5555555544
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=8.5e-09 Score=107.36 Aligned_cols=300 Identities=16% Similarity=0.106 Sum_probs=176.8
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCC-CC--cCcccccCcccCceeeecCC-Cccc--cCccccCCCC
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAP-IE--FLPEEVGNLFHLHYLSVRNT-KVKV--LPKSIGRLLN 625 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~--~lp~~i~~l~~L~~L~L~~~-~i~~--lp~~i~~L~~ 625 (920)
..++.|.+.++.......+..+..+++++..|++.+|. ++ .+-+.-..+..|++|++..| .++. |-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46788888888776666677777899999999999987 22 12222345789999999984 4442 2222346899
Q ss_pred CcEEeecCC-cccc--cchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC----chhHHhcccCC
Q 047503 626 LQTLDLKHS-LVTQ--LPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN----STILKELRKLR 698 (920)
Q Consensus 626 L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~----~~~~~~l~~l~ 698 (920)
|++|++++| .+.. +-.....+.+|+.+.+.+|..........+. +.+..+..+++..+. ......-..+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~---~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA---AYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh---ccChHhhccchhhhccccchHHHHHhhhhh
Confidence 999999998 5553 3334556667777777776322211111111 122333444433333 11122223566
Q ss_pred CCcEEEEE-ecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEE
Q 047503 699 QLRKLGIQ-LTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIG 777 (920)
Q Consensus 699 ~L~~L~l~-~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~ 777 (920)
.|+.|..+ .+......+.+-.....+|+.|.+..|.......+..++.. ++.|+.|+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn----------------------~~~Le~l~ 352 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN----------------------CPHLERLD 352 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC----------------------Chhhhhhc
Confidence 78888887 55444444555556778999999998865443333333333 34455555
Q ss_pred EEeeccCCC--cccccCCCcccceeEEecccCCCee-----eEccCCccccceeeeccCCCCceeeEc-CCCCccccEEE
Q 047503 778 LYWSELTND--PMNVLQALPNLLELRLRDAYDYEKL-----HFKDGWFPRLQRLVLLDLKGVTLMMID-KGAMPCLRELK 849 (920)
Q Consensus 778 L~~~~l~~~--~~~~l~~lp~L~~L~L~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~ 849 (920)
+..|....+ ....-.++|.|+.|.|++|...... .....+...|+.|.+.+|+.+++-..+ ...+++|+.++
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 554432211 1122234566666666655432211 122245677888888888876654332 34678999999
Q ss_pred EecCCCCCc--cCcccCCCCCCCEEEEec
Q 047503 850 IGPCPLLKE--IPAGIEHLRNLEILKFCG 876 (920)
Q Consensus 850 l~~c~~l~~--lp~~l~~l~~L~~L~l~~ 876 (920)
+-+|..... +-..-.++|+++...+..
T Consensus 433 l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 433 LIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred eechhhhhhhhhHHHHhhCccceehhhcc
Confidence 999887653 223456777777665543
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=3e-06 Score=87.32 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=99.6
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccC
Q 047503 176 IESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQ 255 (920)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 255 (920)
.+..++++..++... ....+.|+|..|+|||+||+.+++. ........++++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QAD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------HhH----------
Confidence 455677777776543 3568889999999999999999885 22233345566543211 000
Q ss_pred CccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hhh-HHHHhccC-CCCCcEEEEEccchhhh------hhc
Q 047503 256 SALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LWG-DVEHALLD-NKKGSRIMLTTRHKAVA------DFC 324 (920)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~~~v~------~~~ 324 (920)
. .+...+.+ .-+||+||++... .|. .+...+.. ...+..+|+||+..... ...
T Consensus 82 -----------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 82 -----------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred -----------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 0 01111222 2389999998653 333 34333332 12345788888753211 001
Q ss_pred ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHh
Q 047503 325 KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGG 387 (920)
Q Consensus 325 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~ 387 (920)
........+++.+++.++...++.+.+-... . +--.+..+.|++.+.|.|..+.-+..
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRG--L---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 0101125789999999999999887543221 1 11235567777889998876666543
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=98.40 E-value=3.2e-05 Score=88.66 Aligned_cols=178 Identities=20% Similarity=0.251 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
.+++|.++.++++.+|+..- +...+.+.|+|++|+||||+|+.++++. .|+ ++-++.+... ..+.+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r-~~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQR-TADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccc-cHHHHHHHHHH
Confidence 46999999999999999752 2226789999999999999999999862 122 2223444322 22233333332
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch------hhhHHHHhccCCCCCcEEEEEccch-hhh
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE------LWGDVEHALLDNKKGSRIMLTTRHK-AVA 321 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 321 (920)
.... . .....++-+||+|+++... .+..+...+.. . +..||+|+.+. ...
T Consensus 88 ~~~~---------~------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~-~~~iIli~n~~~~~~ 144 (482)
T PRK04195 88 AATS---------G------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-A-KQPIILTANDPYDPS 144 (482)
T ss_pred hhcc---------C------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-C-CCCEEEeccCccccc
Confidence 2111 0 0011367899999998753 24455544442 2 34466665433 221
Q ss_pred h-hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 322 D-FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 322 ~-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
. .... ....+.+.+++.++....+.+.+..... .. -.+....|++.++|..-.+..
T Consensus 145 ~k~Lrs--r~~~I~f~~~~~~~i~~~L~~i~~~egi--~i---~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRN--ACLMIEFKRLSTRSIVPVLKRICRKEGI--EC---DDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhc--cceEEEecCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 1 1111 1267899999999998888876643321 12 246778899999987654433
No 58
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=2.4e-07 Score=88.95 Aligned_cols=109 Identities=22% Similarity=0.229 Sum_probs=50.9
Q ss_pred cCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCcccc-CCCCCcEEeecCCcccccc--hhhcccccCCeE
Q 047503 576 EFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIG-RLLNLQTLDLKHSLVTQLP--VEIKNLKKLRYL 652 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L 652 (920)
.+.+|++|+|++|.+.+++ .+..+++|+.|++++|.|+.++..+. .+++|++|++++|+|..+- ..+..+++|++|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 5788999999999999875 57789999999999999999977664 6999999999999887654 357789999999
Q ss_pred eecccCCCcccccccccCccCCcccCccccccccC
Q 047503 653 LVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
++.+|..... ...-..-+..+++|+.|+...+.
T Consensus 119 ~L~~NPv~~~--~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 119 SLEGNPVCEK--KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp E-TT-GGGGS--TTHHHHHHHH-TT-SEETTEETT
T ss_pred eccCCcccch--hhHHHHHHHHcChhheeCCEEcc
Confidence 9999743110 00001123456666666655444
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=3.2e-05 Score=89.06 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+...-...++ +..+..-..-+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 478999999999999998764 245667999999999999998766411111110 001111111111100000
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccchh-hhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHKA-VADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 323 (920)
...-+ . ....+...+++...+... ..++.-++|||+++... .|..++..+-......++|++|.+.. +...
T Consensus 88 ~DviE-I-DAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 88 VDYVE-M-DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred ceEEE-e-cccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 00000 0 000011112222222211 12455689999998774 57777777666566778887777653 2211
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHHhhh
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVGGLL 389 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~~~l 389 (920)
+.+ ....+.+++++.++..+.+.+...... ..-..+..+.|++.++|.. -|+..+-..+
T Consensus 166 IrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-----I~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 166 VLS--RCLQFNLKQMPAGHIVSHLERILGEER-----IAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hhh--heEEEecCCcCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 127899999999999998888654321 1122466788899998865 4665544433
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=9.3e-07 Score=82.28 Aligned_cols=115 Identities=13% Similarity=0.223 Sum_probs=78.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccc---CCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVM---NHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLI 270 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 270 (920)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++.++...... ..+..++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~l~ 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------RQTSDELR 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------TS-HHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------cCCHHHHH
Confidence 5789999999999999999998852110 0134577999988888999999999999875222 23567788
Q ss_pred HHHHHHhcCCc-EEEEEEcCCCc-h--hhhHHHHhccCCCCCcEEEEEccc
Q 047503 271 IAVRQYLHDKN-YMIVLDDVWKI-E--LWGDVEHALLDNKKGSRIMLTTRH 317 (920)
Q Consensus 271 ~~l~~~L~~kr-~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtR~ 317 (920)
..+.+.+...+ .+||+|+++.. . .++.+... .+ ..+.++|+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 88888887655 59999999765 2 33334332 23 556777777665
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.35 E-value=6.4e-06 Score=84.51 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=99.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..-+.+||++|+||||||+.+.+..+-.. ..||..|-.-....-.++|+++....
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~--------------------- 216 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE--------------------- 216 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH---------------------
Confidence 67788999999999999999998633322 56777776655555566666554322
Q ss_pred HHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEE--EccchhhhhhcccCCccceeecCCCCHHHHHHHHHH
Q 047503 274 RQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIML--TTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCR 349 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 349 (920)
..+.++|.+|.+|.|..- .+.+ .+||...+|.-++| ||.++...-...-.....++.|++|+.++-..++.+
T Consensus 217 -~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 217 -KSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred -HhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 234678999999999643 2222 24677778887766 777765332111111227899999999999988888
Q ss_pred Hhc---CCCCCC-CCCh----hHHHHHHHHHHHhCCch
Q 047503 350 KAF---ASVSDG-GCPP----ELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 350 ~~~---~~~~~~-~~~~----~l~~~~~~I~~~c~glP 379 (920)
..- ...... ..+. -...+..-++..|.|-.
T Consensus 293 aia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 293 AIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 432 111111 1111 12346667777888864
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=1.9e-06 Score=85.71 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHHhc-CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc
Q 047503 172 EVVGIESARDILIGWLVN-GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM 221 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (920)
.|+||+++.+++...+.. .....+++.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23347899999999999999999998863333
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.5e-05 Score=86.03 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+.-.-..... ...+.....-.++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 478999999999999887753 346789999999999999999877421000000 000000000011100000
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch-hhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK-AVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 322 (920)
.....- . .......++. +.+.+.+ .+++-++|+|+++... .++.+...+-......++|++|.+. .+..
T Consensus 88 ~d~~~~-~-~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 88 LDLIEI-D-AASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CceEEe-c-ccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 000000 0 0000111221 1122221 2355699999998764 5777777776656667777766543 3322
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
....- ...+++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|-.
T Consensus 165 tI~SR--c~~~~~~~l~~~el~~~L~~~~~~~g~-----~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 165 TILSR--CLQFKLKIISEEKIFNFLKYILIKESI-----DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHhh--ceEEeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 22211 268999999999999888876543211 11235667788999998753
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.31 E-value=1.1e-05 Score=88.68 Aligned_cols=196 Identities=14% Similarity=0.052 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
++++|++..++.+..++..+. .+.+.++|..|+||||+|+.+.+... ...+. ..+.+++++-. ......+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~------~~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFF------DQGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhh------hcchhhh
Confidence 478899999999999887654 44678999999999999999877421 12221 23344433211 0000000
Q ss_pred hhhcc--CCcccc-CCcCCHHHHHHHH-HHH---h--cCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch
Q 047503 250 HQLTG--QSALGE-MNNMEEKDLIIAV-RQY---L--HDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 250 ~~~~~--~~~~~~-~~~~~~~~l~~~l-~~~---L--~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
..... ...... ..........+.+ +.. . .+.+-+||+||+.... ....+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00000 000000 0000011112221 111 1 1344589999997653 3444555544444457788777543
Q ss_pred h-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHH
Q 047503 319 A-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAI 382 (920)
Q Consensus 319 ~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai 382 (920)
. +....... ...+++.+++.++...++.+.+..... . --.+....+++.++|.+-.+
T Consensus 166 ~~~~~~L~sr--~~~v~~~~~~~~~~~~~l~~~~~~~~~--~---~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 166 SKLIPPIRSR--CLPLFFRAPTDDELVDVLESIAEAEGV--D---YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hhCchhhcCC--ceEEEecCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHH
Confidence 2 22222221 257889999999999888886543321 1 12456778888888875443
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.31 E-value=5.5e-06 Score=78.75 Aligned_cols=123 Identities=17% Similarity=0.078 Sum_probs=72.7
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhc
Q 047503 174 VGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLT 253 (920)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 253 (920)
+|++..++.+...+.... .+.+.|+|.+|+||||+|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 478888999988887643 46888999999999999999998632 222456676654433221111100000
Q ss_pred cCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCC------CCCcEEEEEccchh
Q 047503 254 GQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDN------KKGSRIMLTTRHKA 319 (920)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~------~~gs~iivTtR~~~ 319 (920)
............++.++|+||++.. .....+...+... ..+..+|+||....
T Consensus 72 --------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999864 2222333322221 35778888887654
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=6e-08 Score=95.19 Aligned_cols=249 Identities=18% Similarity=0.170 Sum_probs=143.6
Q ss_pred hccCCeeeEEEccCCCCC-----cCcccccCcccCceeeecCCCc----cccCc-------cccCCCCCcEEeecCCccc
Q 047503 574 VAEFKLMKVLDFEDAPIE-----FLPEEVGNLFHLHYLSVRNTKV----KVLPK-------SIGRLLNLQTLDLKHSLVT 637 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i----~~lp~-------~i~~L~~L~~L~L~~~~l~ 637 (920)
+.-+..+..++|+||.|. .+...|.+-.+|+..+++.-.. .++|+ .+-+|++|++.+|++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345889999999999986 4556677778899988886321 24444 4568999999999999655
Q ss_pred -ccc----hhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEec---C
Q 047503 638 -QLP----VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLT---N 709 (920)
Q Consensus 638 -~lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~---~ 709 (920)
..| ..|++-+.|.||.+++|++++.. +..+.. .|++|. .......-+.|+...+.-| +
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a-G~rigk------al~~la-------~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIA-GGRIGK------ALFHLA-------YNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccc-hhHHHH------HHHHHH-------HHhhhccCCCceEEEeccchhcc
Confidence 333 34778899999999998664421 111111 122221 1112234455666555422 2
Q ss_pred CcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCc--
Q 047503 710 DDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDP-- 787 (920)
Q Consensus 710 ~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~-- 787 (920)
.+.......+....+|+.+.+..|.+... .+..|-+. .+..+.+|+.|+|.+|.++...
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpe-----------gv~~L~~~--------gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPE-----------GVTMLAFL--------GLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcc-----------hhHHHHHH--------HHHHhCcceeeeccccchhhhhHH
Confidence 22333334445556777777777654321 01111000 1233566666666666554321
Q ss_pred --ccccCCCcccceeEEecccCCCee------eEccCCccccceeeeccCCCCce-e------eEcCCCCccccEEEEec
Q 047503 788 --MNVLQALPNLLELRLRDAYDYEKL------HFKDGWFPRLQRLVLLDLKGVTL-M------MIDKGAMPCLRELKIGP 852 (920)
Q Consensus 788 --~~~l~~lp~L~~L~L~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~l~~-~------~~~~~~~~~L~~L~l~~ 852 (920)
...+...+.|+.|.+.+|.....- .+....+|+|..|.+.++..-.. + .+..+++|-|..|.+.+
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 123444556666666665433211 12334577888887776543221 1 23457899999999998
Q ss_pred CCC
Q 047503 853 CPL 855 (920)
Q Consensus 853 c~~ 855 (920)
|..
T Consensus 313 Nr~ 315 (388)
T COG5238 313 NRI 315 (388)
T ss_pred Ccc
Confidence 884
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.24 E-value=1.5e-06 Score=89.07 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=61.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHHHHHHHHhhhccCCccccCCcCC-HHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE--CMKKDLLIKMIKEFHQLTGQSALGEMNNME-EKDLI 270 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~l~ 270 (920)
-..++|+|.+|+|||||++++|++.... +|+.++|+.++.. +++.++++.+...+-...-..++. .... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~--~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE--RHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH--HHHHHHHHHH
Confidence 3578999999999999999999974444 8999999998777 788888888833222211110000 0000 01122
Q ss_pred HHHHHH-hcCCcEEEEEEcCCC
Q 047503 271 IAVRQY-LHDKNYMIVLDDVWK 291 (920)
Q Consensus 271 ~~l~~~-L~~kr~LlVlDdv~~ 291 (920)
...+.. -.+++.++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247899999999954
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.24 E-value=7.4e-07 Score=100.36 Aligned_cols=173 Identities=24% Similarity=0.344 Sum_probs=122.3
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCC-eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFK-LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTL 629 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 629 (920)
.+.+..|.+.+... .-++.....++ +|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.+++|+.|
T Consensus 115 ~~~l~~L~l~~n~i---~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNI---TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCccc---ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 34555555554433 22333345553 899999999999999888999999999999999999999998899999999
Q ss_pred eecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCch-hHHhcccCCCCcEEEEEec
Q 047503 630 DLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANST-ILKELRKLRQLRKLGIQLT 708 (920)
Q Consensus 630 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~ 708 (920)
++++|.+..+|..+..+..|..|.+++|. ....+..+.+++++..+.+..+... .+..++.+++++.|+++.+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS------IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc------ceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 99999999999988888889999999862 3345556777777777775544422 2445555556666666533
Q ss_pred CCcchhHHHHhccCCCCCEEEEeeCCC
Q 047503 709 NDDGKNLCASIADMENLESLTVESTSR 735 (920)
Q Consensus 709 ~~~~~~l~~~l~~~~~L~~L~L~~~~~ 735 (920)
.... +.. +..+.+|+.|+++++..
T Consensus 266 ~i~~--i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 266 QISS--ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccc--ccc-ccccCccCEEeccCccc
Confidence 2211 111 44555666666655543
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.5e-08 Score=98.10 Aligned_cols=179 Identities=21% Similarity=0.175 Sum_probs=94.3
Q ss_pred cCccccccccC---chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccE
Q 047503 677 DLQKLYIVQAN---STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEH 753 (920)
Q Consensus 677 ~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 753 (920)
.||.|+++... .....-+..+.+|+.|++....... .+...+.+-.+|+.|+|+.|.......+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~----------- 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQ----------- 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHH-----------
Confidence 35555555443 2233345566666666665333322 35555666666777777665443221111
Q ss_pred EEEeccCCCCCccccCCCCcceEEEEeeccCCCccccc-CC-CcccceeEEeccc---CCCeeeEccCCccccceeeecc
Q 047503 754 LYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVL-QA-LPNLLELRLRDAY---DYEKLHFKDGWFPRLQRLVLLD 828 (920)
Q Consensus 754 L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~-lp~L~~L~L~~~~---~~~~~~~~~~~~~~L~~L~l~~ 828 (920)
-.+.+|+.|..|+|++|.+..+....+ .+ -++|..|+|+++. ....+......+|+|..|+|++
T Consensus 254 -----------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 254 -----------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred -----------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 123456666666666665544322211 11 2456666666442 1122222234577777777777
Q ss_pred CCCCceee-EcCCCCccccEEEEecCCCCC-ccCcccCCCCCCCEEEEecCh
Q 047503 829 LKGVTLMM-IDKGAMPCLRELKIGPCPLLK-EIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 829 ~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~ 878 (920)
|..++.-. ..+..|+.|++|.++.|..+- ...-.+...|+|.+|++.||-
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 66555422 234567777777777777432 111135666778888888764
No 70
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.23 E-value=0.00039 Score=81.55 Aligned_cols=208 Identities=15% Similarity=0.099 Sum_probs=120.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC---CceEEEEeCCC---CCHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF---DCRAWITVGRE---CMKKDLLIK 244 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~~~~~ 244 (920)
++++|++..+..+.+.+.... ...+.|+|.+|+||||||+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 368899999999988876443 4579999999999999999998764333332 22445555321 122222111
Q ss_pred HH---------------HHHhhh---------c-cC-CccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhh
Q 047503 245 MI---------------KEFHQL---------T-GQ-SALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWG 296 (920)
Q Consensus 245 i~---------------~~l~~~---------~-~~-~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~ 296 (920)
++ ...+.. . +. -.-.++..++ ...+..+.+.+.++++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 110000 0 00 0001233344 34577888889899999997777654 4688
Q ss_pred HHHHhccCCCCCcEEEE--Eccchhh-hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHH
Q 047503 297 DVEHALLDNKKGSRIML--TTRHKAV-ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVA 373 (920)
Q Consensus 297 ~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~ 373 (920)
.+...+....+...+++ ||++... ....... ...+.+.+++.+|.+.++.+.+.... .... .++...|.+
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR--~~~i~~~pls~edi~~Il~~~a~~~~--v~ls---~eal~~L~~ 383 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSR--CAEVFFEPLTPEDIALIVLNAAEKIN--VHLA---AGVEELIAR 383 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhc--eeEEEeCCCCHHHHHHHHHHHHHHcC--CCCC---HHHHHHHHH
Confidence 88766666555554555 5664432 2221111 15678999999999999998764321 1111 234444444
Q ss_pred HhCCchHHHHHHHhh
Q 047503 374 KCGGLPLAIVAVGGL 388 (920)
Q Consensus 374 ~c~glPlai~~~~~~ 388 (920)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 444445555555443
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.7e-05 Score=89.50 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC-------------------CCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH-------------------FDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~ 231 (920)
.+++|-+..++.|..++..+. -.+.+.++|..|+||||+|+.+++...-... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 478999999999999987754 2456689999999999999999875211111 11112222
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCc
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGS 309 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 309 (920)
......+ +.+++++..+.. .-..+++-++|||+++.. +.+..++..+-......
T Consensus 95 Aas~~kV-DdIReLie~v~~-----------------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~v 150 (944)
T PRK14949 95 AASRTKV-DDTRELLDNVQY-----------------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHV 150 (944)
T ss_pred cccccCH-HHHHHHHHHHHh-----------------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCe
Confidence 1111111 112222221110 012367779999999866 46677776666555566
Q ss_pred EEEEEccc-hhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHH
Q 047503 310 RIMLTTRH-KAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAV 385 (920)
Q Consensus 310 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~ 385 (920)
++|++|.+ ..+...+.. ....|.+.+|+.++...++.+.+-... ..--.+....|++.++|.|- |+..+
T Consensus 151 rFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~Eg-----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 151 KFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQ-----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66665544 333322111 117899999999999998888653321 11224567889999999885 44443
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.2e-06 Score=68.85 Aligned_cols=56 Identities=38% Similarity=0.580 Sum_probs=32.2
Q ss_pred cCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccch-hhcccccCCeEeeccc
Q 047503 602 HLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHS 657 (920)
Q Consensus 602 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 657 (920)
+|++|++++|.+..+|. .+.++++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45556666665555553 34556666666666666655543 3556666666666554
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=8.1e-07 Score=88.60 Aligned_cols=87 Identities=22% Similarity=0.138 Sum_probs=64.0
Q ss_pred hhccCCeeeEEEccCCCCC---cCcccccCcccCceeeecCCCccccCccc-cCCCCCcEEeecCCc--ccccchhhccc
Q 047503 573 LVAEFKLMKVLDFEDAPIE---FLPEEVGNLFHLHYLSVRNTKVKVLPKSI-GRLLNLQTLDLKHSL--VTQLPVEIKNL 646 (920)
Q Consensus 573 ~~~~l~~Lr~L~L~~~~~~---~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~--l~~lp~~i~~l 646 (920)
+-..+..++.|||.+|.++ ++..-+.+|++|++|+|+.|.+..--.++ .-+.+|++|.|.++. .+.+-..+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3367788999999999887 44444568899999999988755222222 346789999998884 44666778889
Q ss_pred ccCCeEeecccCC
Q 047503 647 KKLRYLLVYHSDN 659 (920)
Q Consensus 647 ~~L~~L~l~~~~~ 659 (920)
|+++.|+++.|++
T Consensus 146 P~vtelHmS~N~~ 158 (418)
T KOG2982|consen 146 PKVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhhccchh
Confidence 9999999888743
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=3.3e-05 Score=83.65 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=103.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
++++|.++.++.|..++..+. .+-+.++|+.|+||||+|+.+++.. ....|. .++=+..++.... +.+++++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHHHHH
Confidence 468899988888888876654 4456799999999999999988741 112222 1111222222111 2233333322
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch-hhhhhccc
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQ 326 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~ 326 (920)
..... . .-.++.-++|+|+++... ....+...+-.....+++|+++... .+......
T Consensus 89 ~~~~~--------~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 89 AQKKV--------T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred Hhccc--------c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 11100 0 002356699999998763 3344444444334557777766443 22111111
Q ss_pred CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 327 SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
. ...++++++++++....+.+.+-...- .. -.+....|++.++|..-
T Consensus 149 R--c~~i~f~~l~~~~l~~~L~~i~~~egi--~i---~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 149 R--CAIVRFSRLSDQEILGRLMKVVEAEKV--PY---VPEGLEAIIFTADGDMR 195 (319)
T ss_pred h--hhcccCCCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHcCCCHH
Confidence 1 167899999999999888877643321 11 13567888999988753
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=5.1e-05 Score=86.25 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc------------------------CCCCc
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM------------------------NHFDC 226 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------------~~F~~ 226 (920)
+++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+...-. +.|.-
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 478999999999999998764 24677899999999999999886631100 01111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHH
Q 047503 227 RAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEH 300 (920)
Q Consensus 227 ~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~ 300 (920)
+++++.+. +...+++.+.+... ..++.-++|+|+++.. ..+..++.
T Consensus 95 viEIdAas----------------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLK 146 (700)
T PRK12323 95 YIEMDAAS----------------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLK 146 (700)
T ss_pred ceEecccc----------------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHH
Confidence 12222111 11222222222221 1356679999999876 46667777
Q ss_pred hccCCCCCcEEEEEcc-chhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 301 ALLDNKKGSRIMLTTR-HKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 301 ~l~~~~~gs~iivTtR-~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
.+-....++++|++|. ...+...+.+- ...+.+..++.++..+.+.+.+..... ....+....|++.++|.|
T Consensus 147 TLEEPP~~v~FILaTtep~kLlpTIrSR--Cq~f~f~~ls~eei~~~L~~Il~~Egi-----~~d~eAL~~IA~~A~Gs~ 219 (700)
T PRK12323 147 TLEEPPEHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPPGHIVSHLDAILGEEGI-----AHEVNALRLLAQAAQGSM 219 (700)
T ss_pred hhccCCCCceEEEEeCChHhhhhHHHHH--HHhcccCCCChHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCH
Confidence 6655455566555554 44443222111 178999999999999888876532211 112345678899999998
Q ss_pred HHHHHH
Q 047503 380 LAIVAV 385 (920)
Q Consensus 380 lai~~~ 385 (920)
..+..+
T Consensus 220 RdALsL 225 (700)
T PRK12323 220 RDALSL 225 (700)
T ss_pred HHHHHH
Confidence 644433
No 76
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.18 E-value=1.5e-06 Score=92.43 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCC--CHHHHHHHHHHHHhhhccCCcc
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGREC--MKKDLLIKMIKEFHQLTGQSAL 258 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~ 258 (920)
-++++.+..-.. -.-..|+|++|+||||||++||++.... +|+.++||.+++.+ ++.++++.+...+-...-..++
T Consensus 157 ~rvID~l~PIGk-GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~ 234 (416)
T PRK09376 157 TRIIDLIAPIGK-GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPA 234 (416)
T ss_pred eeeeeeeccccc-CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCH
Confidence 356666655332 2456799999999999999999974433 89999999999887 6666666665221111100000
Q ss_pred ccCCcCCH-HHHHHHHHHH-hcCCcEEEEEEcCCC
Q 047503 259 GEMNNMEE-KDLIIAVRQY-LHDKNYMIVLDDVWK 291 (920)
Q Consensus 259 ~~~~~~~~-~~l~~~l~~~-L~~kr~LlVlDdv~~ 291 (920)
.. .... ......-+.. -.+++.+|++|++..
T Consensus 235 ~~--~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ER--HVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HH--HHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 00 0000 0111111111 257999999999954
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.8e-06 Score=67.82 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=52.7
Q ss_pred CeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcc
Q 047503 578 KLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLV 636 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l 636 (920)
++|++|++++|.+..+| ..+.++++|++|++++|.+..+|. .+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999887 578899999999999999998875 678999999999999864
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=2.2e-05 Score=92.74 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=95.4
Q ss_pred CccccchhhHH---HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARD---ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++++|.+..+. .+...+..+. ...+.++|++|+||||||+.+++. ...+| +.++.......-+++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i~dir~--- 95 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGVKDLRA--- 95 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhhHHHHH---
Confidence 46889888774 4556665543 556789999999999999999985 33444 111110000000111
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHh--cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEE--Eccchh--
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYL--HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIML--TTRHKA-- 319 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~-- 319 (920)
......+.+ .+++.++||||++.. ..++.+...+. .|+.+++ ||.+..
T Consensus 96 ---------------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 96 ---------------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFE 151 (725)
T ss_pred ---------------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhh
Confidence 111121222 246789999999765 34555544332 3555555 344332
Q ss_pred hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCC--CCCChhHHHHHHHHHHHhCCch
Q 047503 320 VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSD--GGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 320 v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~--~~~~~~l~~~~~~I~~~c~glP 379 (920)
+.....+. ...+.+++|+.++...++.+.+-..... .....--.+....|++.+.|.-
T Consensus 152 l~~aL~SR--~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 152 VNKALVSR--SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhhHhhcc--ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 22211111 2679999999999999998866411000 0001122456677888888763
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=6.4e-05 Score=85.09 Aligned_cols=196 Identities=17% Similarity=0.110 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDC-RAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+++|-+..+..+...+..+. -.+.+.++|..|+||||+|+.+++.-.-...... -.+..+... ..-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 478999999998888777653 2467889999999999999999774211100000 000000000 0000000000
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEE-Eccchhhhh
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIML-TTRHKAVAD 322 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~ 322 (920)
.....+ . ........+++...+... +.+++-++|+|+++.. ..|..+...+......+.+|+ ||+...+..
T Consensus 96 h~Dv~e-i-daas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 96 HPDIIE-I-DAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCcEEE-e-eccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 000000 0 000111222322222211 2356779999999875 468888777776555666654 555555544
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
...... ..+++.+++.++....+.+.+..... .-..+....|++.++|.+-
T Consensus 174 tI~SRc--~~~ef~~ls~~el~~~L~~i~~~egi-----~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 174 TIISRC--QRYDLRRLSFEEIFKLLEYITKQENL-----KTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred HHHhcc--eEEEccCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHH
Confidence 332222 67999999999999999888754321 1123556778899999764
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=2.6e-06 Score=100.59 Aligned_cols=102 Identities=19% Similarity=0.426 Sum_probs=77.3
Q ss_pred eeeEEEccCCCCC-cCcccccCcccCceeeecCCCcc-ccCccccCCCCCcEEeecCCccc-ccchhhcccccCCeEeec
Q 047503 579 LMKVLDFEDAPIE-FLPEEVGNLFHLHYLSVRNTKVK-VLPKSIGRLLNLQTLDLKHSLVT-QLPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 579 ~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~ 655 (920)
.++.|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788888888887 77888888899999999988886 78888888999999999888776 678888888999999988
Q ss_pred ccCCCcccccccccCccCCc-ccCccccccc
Q 047503 656 HSDNGTHERGVKIQEGFGSL-TDLQKLYIVQ 685 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l-~~L~~L~~~~ 685 (920)
+|.+ ...+|..++.+ .++..+++..
T Consensus 499 ~N~l-----~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSL-----SGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCcc-----cccCChHHhhccccCceEEecC
Confidence 8732 33566555432 2334444433
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6.2e-05 Score=85.72 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-------------------cCCCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV-------------------MNHFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv~ 231 (920)
++++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...- .+.|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 478999999999999997754 2466889999999999999998763110 01122223332
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH-hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCC
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY-LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKG 308 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 308 (920)
......+.+ .++ +...+... ..+++-++|+|+++.. +.++.+...+-.....
T Consensus 95 aas~~gvd~-ir~------------------------ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 95 AASRTGVEE-TKE------------------------ILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred cccccCHHH-HHH------------------------HHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 211111111 112 22222211 2356679999999765 4577777777665556
Q ss_pred cEEEE-EccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHH
Q 047503 309 SRIML-TTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVG 386 (920)
Q Consensus 309 s~iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~ 386 (920)
+.+|+ ||....+....... ...+++.+++.++....+.+.+.... ..--......|++.++|.+ -|+..+-
T Consensus 150 v~fIL~Ttd~~kil~tI~SR--c~~~~f~~Ls~~eI~~~L~~il~~eg-----i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSR--CIQLHLKHISQADIKDQLKIILAKEN-----INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ceEEEEECChhhhhhhHHHh--eeeEEeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66665 54443333222211 27899999999998877777543221 1122455677889999865 4555554
Q ss_pred hhh
Q 047503 387 GLL 389 (920)
Q Consensus 387 ~~l 389 (920)
.++
T Consensus 223 k~i 225 (546)
T PRK14957 223 QAI 225 (546)
T ss_pred HHH
Confidence 433
No 82
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.8e-05 Score=85.84 Aligned_cols=201 Identities=17% Similarity=0.120 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++...-.+.+....|.|.+.. .+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCCC
Confidence 478999999999998888764 3467799999999999999998775221222222333322110 0000000
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEcc-chhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTR-HKAVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~ 322 (920)
..... .. ...+...+.+ +.+.+.+ .+++-++|+|+++.. +.+..+...+......+.+|++|. ...+..
T Consensus 85 ~dv~e-l~-~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 85 PDVLE-ID-AASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CceEE-ec-ccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 00000 00 0001111221 1122222 246679999999865 457777777766555555555554 333333
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHhhhc
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGGLLS 390 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~~l~ 390 (920)
.+... ...+++.+++.++..+.+.+.+..... .--.+....|++.++|.+- |+..+-.++.
T Consensus 162 ~I~SR--c~~~~f~~ls~~el~~~L~~i~~~egi-----~i~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 162 TILSR--TQHFRFRRLTEEEIAGKLRRLLEAEGR-----EAEPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred HHhcc--eEEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 22222 268999999999999999887644321 1124567889999999875 4444444433
No 83
>PRK08727 hypothetical protein; Validated
Probab=98.17 E-value=4.6e-05 Score=78.30 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=87.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
...+.|+|..|+|||+|++.+++. .......+.++++.+ ....+ ...+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~------------------------~~~~ 88 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRL------------------------RDAL 88 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhH------------------------HHHH
Confidence 346999999999999999999885 333334566776421 11100 0111
Q ss_pred HHHhcCCcEEEEEEcCCCch---hhhHHHHhcc-C-CCCCcEEEEEccchh---------hhhhcccCCccceeecCCCC
Q 047503 274 RQYLHDKNYMIVLDDVWKIE---LWGDVEHALL-D-NKKGSRIMLTTRHKA---------VADFCKQSSFVQVHELEALP 339 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~-~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~~l~~L~ 339 (920)
. .+ .+.-+||+||+.... .|....-.+. . ...|..||+|++..- +...+.. ...+++++++
T Consensus 89 ~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~---~~~~~l~~~~ 163 (233)
T PRK08727 89 E-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ---CIRIGLPVLD 163 (233)
T ss_pred H-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc---CceEEecCCC
Confidence 1 11 233589999997542 3433222222 1 124667999998531 1111111 2588999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHH
Q 047503 340 AVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAI 382 (920)
Q Consensus 340 ~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai 382 (920)
.++..+++.+.+.... . .--++....|+++++|-.-.+
T Consensus 164 ~e~~~~iL~~~a~~~~--l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 164 DVARAAVLRERAQRRG--L---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHhCCCCHHHH
Confidence 9999999998775421 1 122466778888888765433
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6.7e-05 Score=85.54 Aligned_cols=176 Identities=16% Similarity=0.119 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-------------------CCCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM-------------------NHFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~ 231 (920)
++++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++...-. +.|.-++.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 478999999999999998764 24788999999999999999887641100 0111112222
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHH----HhcCCcEEEEEEcCCCc--hhhhHHHHhccCC
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQ----YLHDKNYMIVLDDVWKI--ELWGDVEHALLDN 305 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~ 305 (920)
.+.. ...+++...+.. -..++.-++|+|+++.. ..+..+...+-..
T Consensus 94 AAs~----------------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP 145 (702)
T PRK14960 94 AASR----------------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP 145 (702)
T ss_pred cccc----------------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 2111 111222111111 11356678999999876 3566676666655
Q ss_pred CCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHH
Q 047503 306 KKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAI 382 (920)
Q Consensus 306 ~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai 382 (920)
..+.++|++|.+.. +..... .....+++.+++.++....+.+.+..... .--.+....|++.++|.+-.+
T Consensus 146 P~~v~FILaTtd~~kIp~TIl--SRCq~feFkpLs~eEI~k~L~~Il~kEgI-----~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVI--SRCLQFTLRPLAVDEITKHLGAILEKEQI-----AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCcEEEEEECChHhhhHHHH--HhhheeeccCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHH
Confidence 56677777776532 221111 11278999999999999888876643221 122456678889999977433
No 85
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=2.2e-06 Score=90.55 Aligned_cols=291 Identities=19% Similarity=0.175 Sum_probs=178.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
..+.+.++|.|||||||++-.+.. +..-| +.+.++....-.+...+.-.+...++.. ..+.+.-..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~----------~~~g~~~~~ 79 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLH----------VQPGDSAVD 79 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccc----------cccchHHHH
Confidence 368999999999999999999877 56677 5666676666556665555555545433 112234455
Q ss_pred HHHHHhcCCcEEEEEEcCCCch-hhhHHHHhccCCCCCcEEEEEccchhhhhhcccCCccceeecCCCCHH-HHHHHHHH
Q 047503 272 AVRQYLHDKNYMIVLDDVWKIE-LWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQSSFVQVHELEALPAV-EAWRLFCR 349 (920)
Q Consensus 272 ~l~~~L~~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~-~~~~Lf~~ 349 (920)
.+.....++|.++|+||-...- .-..+...+..+...-.|+.|+|....... .....+++|+.. ++.++|..
T Consensus 80 ~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g------e~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 80 TLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG------EVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc------cccccCCccccCCchhHHHHH
Confidence 6777788999999999987652 222333444444545678888887654321 155667777766 68888887
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHHh----ccCCCCCC--CCchhhHHHHh
Q 047503 350 KAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLE----GLGSKLGS--DPHLKICSRVL 423 (920)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~----~~~~~~~~--~~~~~~~~~~l 423 (920)
.+............-......|.++..|.|++|...++..++-. ..+-..-++ .+... .. ........+.+
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~--~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl 230 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS--PDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASL 230 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC--HHHHHHHHhhHHHHHhcc-cccchhHHHhccchh
Confidence 76544322222334457788999999999999999999877543 222222211 11111 11 11123467789
Q ss_pred hhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCChHHHHHHHHHHHHhcccccccc--ccCceEe
Q 047503 424 SEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQLGEEYLSELIDRSLVHVSR--RARSCRV 501 (920)
Q Consensus 424 ~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~--~~~~~~m 501 (920)
.+||.-|....+--|--++.|...+.-. ...|.+.|=.. ..........+..+++.+++.... ....|+.
T Consensus 231 ~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl 302 (414)
T COG3903 231 DWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRL 302 (414)
T ss_pred hhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHH
Confidence 9999999999999999999998776543 23344432210 012233444566677777765544 1222333
Q ss_pred cHHHHHHHHHHh
Q 047503 502 HDLMHEIILEKT 513 (920)
Q Consensus 502 Hdlv~~~~~~~~ 513 (920)
-+-.+.|+..+-
T Consensus 303 ~eT~r~YalaeL 314 (414)
T COG3903 303 LETGRRYALAEL 314 (414)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00012 Score=82.65 Aligned_cols=187 Identities=18% Similarity=0.147 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC-------------------CCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH-------------------FDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~ 231 (920)
++++|.+..+..|...+..+. -.+.+.++|+.|+||||+|+.+++...-... +..+..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 478999888888888777654 2366889999999999999998764111000 00112222
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCc
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGS 309 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 309 (920)
.+....... ++++.+.+.. .-..+++-++|+|+++.. +..+.+...+.......
T Consensus 93 aa~~~gid~-iR~i~~~~~~-----------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 93 AASNRGIDE-IRKIRDAVGY-----------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred CcccCCHHH-HHHHHHHHhh-----------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 211111111 1111111100 001245679999999765 34556666665544445
Q ss_pred EEEEE-ccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHHHHHHh
Q 047503 310 RIMLT-TRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAIVAVGG 387 (920)
Q Consensus 310 ~iivT-tR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai~~~~~ 387 (920)
.+|++ |....+........ ..+++.+++.++....+.+.+....- .--.+....|++.++|. +.|+..+-.
T Consensus 149 v~Ilattn~~kl~~~L~SR~--~vv~f~~l~~~el~~~L~~i~~~egi-----~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRC--QVIEFRNISDELIIKRLQEVAEAEGI-----EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHhcCc--EEEEECCccHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55444 43344443333222 68999999999998888887643211 11235667788877654 677777766
Q ss_pred hh
Q 047503 388 LL 389 (920)
Q Consensus 388 ~l 389 (920)
+.
T Consensus 222 l~ 223 (472)
T PRK14962 222 VW 223 (472)
T ss_pred HH
Confidence 44
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00012 Score=79.67 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=130.6
Q ss_pred CCccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC-Cc-eEEEEeCCCCCHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DC-RAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~v~~~~~~~~~~~~i 245 (920)
++.+.+|+++++++...|... +....-+.|+|..|.|||+.++.|.+. +.... .. +++|++-...+...++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 345899999999998887642 112334889999999999999999985 33332 12 7889998888999999999
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCchhh--hHHHHhccCCC-CCcEEEE--Eccch
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIELW--GDVEHALLDNK-KGSRIML--TTRHK 318 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~--~~l~~~l~~~~-~gs~iiv--TtR~~ 318 (920)
+.+++.. + ...++..+....+.+.+. ++.++||||+++....- +.+-..+.... ..++|++ .+-+.
T Consensus 94 ~~~~~~~-----p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 94 LNKLGKV-----P--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHcCCC-----C--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 9998732 1 123455677777887775 47899999999765322 23323333222 2454433 33333
Q ss_pred hhhhh----cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCC-chHHHHHHHh
Q 047503 319 AVADF----CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGG-LPLAIVAVGG 387 (920)
Q Consensus 319 ~v~~~----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~g-lPlai~~~~~ 387 (920)
..... ....-....+..+|-+.+|-..++...+-..-.+........+....++..-+| .-.|+..+..
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 22221 112111234778899999999999988754332234444444544555555554 3445544433
No 88
>PRK09087 hypothetical protein; Validated
Probab=98.14 E-value=0.00012 Score=74.41 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=83.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
.+.+.|+|..|+|||+|++.+++.. ...+++.. .+..+++ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~------------------------~-- 84 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAA------------------------N-- 84 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHH------------------------H--
Confidence 4678999999999999999988742 12243321 1111111 1
Q ss_pred HHHhcCCcEEEEEEcCCCch-hhhHHHHhccC-CCCCcEEEEEccch---------hhhhhcccCCccceeecCCCCHHH
Q 047503 274 RQYLHDKNYMIVLDDVWKIE-LWGDVEHALLD-NKKGSRIMLTTRHK---------AVADFCKQSSFVQVHELEALPAVE 342 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~~l~~L~~~~ 342 (920)
.+.+ -+|++||+.... .-+.+...+.. ...|..+|+|++.. .....+... .++++++++.++
T Consensus 85 --~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~ 157 (226)
T PRK09087 85 --AAAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDAL 157 (226)
T ss_pred --hhhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHH
Confidence 1111 278889996532 11223222221 12356788888742 222233332 789999999999
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 343 AWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 343 ~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
-.+++.+.+.... . .--+++..-|++++.|..-++..
T Consensus 158 ~~~iL~~~~~~~~--~---~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 158 LSQVIFKLFADRQ--L---YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHHHcC--C---CCCHHHHHHHHHHhhhhHHHHHH
Confidence 9999999875431 1 12246777888888887665554
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00011 Score=80.81 Aligned_cols=174 Identities=11% Similarity=0.081 Sum_probs=105.5
Q ss_pred CccccchhhHHHHHHHHhcCCC--------CcEEEEEEcCCCCcHHHHHHHHhcCcccc-------------------CC
Q 047503 171 DEVVGIESARDILIGWLVNGRK--------QRSVVALVGQGGIGKTTLAGKLFNNQYVM-------------------NH 223 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~ 223 (920)
++++|-+..++.|..++..+.. -.+-+.++|+.|+||||+|+.+.+.-.-. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999999987531 25678899999999999999886531000 01
Q ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhh
Q 047503 224 FDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWG 296 (920)
Q Consensus 224 F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~ 296 (920)
.| +.++.... .....+++. .+.+.+ .+++-++|+|+++.. ....
T Consensus 85 pD-~~~i~~~~---------------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aan 135 (394)
T PRK07940 85 PD-VRVVAPEG---------------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAAN 135 (394)
T ss_pred CC-EEEecccc---------------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHH
Confidence 11 11221110 111222222 111221 245568889999876 3445
Q ss_pred HHHHhccCCCCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHh
Q 047503 297 DVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKC 375 (920)
Q Consensus 297 ~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c 375 (920)
.+...+-....++.+|++|.+. .+...+.+- ...+.+.+++.++..+.+.+... .+ .+.+..+++.+
T Consensus 136 aLLk~LEep~~~~~fIL~a~~~~~llpTIrSR--c~~i~f~~~~~~~i~~~L~~~~~-------~~---~~~a~~la~~s 203 (394)
T PRK07940 136 ALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR--CRHVALRTPSVEAVAEVLVRRDG-------VD---PETARRAARAS 203 (394)
T ss_pred HHHHHhhcCCCCCeEEEEECChHHChHHHHhh--CeEEECCCCCHHHHHHHHHHhcC-------CC---HHHHHHHHHHc
Confidence 5666665555566666665553 333222221 27899999999999988875421 11 34567889999
Q ss_pred CCchHHHHHH
Q 047503 376 GGLPLAIVAV 385 (920)
Q Consensus 376 ~glPlai~~~ 385 (920)
+|.|..+..+
T Consensus 204 ~G~~~~A~~l 213 (394)
T PRK07940 204 QGHIGRARRL 213 (394)
T ss_pred CCCHHHHHHH
Confidence 9999755444
No 90
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.10 E-value=8.8e-05 Score=80.90 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=105.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe--CCCCCHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV--GRECMKKDLLIKMIKE 248 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~ 248 (920)
++++|+++.++.+..++.... .+.+.|+|..|+||||+|+.+.+.. ....+. ..++.+ +.... .+.+.+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~-~~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERG-IDVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccc-hHHHHHHHHH
Confidence 468899999999999997654 4457999999999999999998752 111121 122222 11111 1122222222
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch-hhhhhcc
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK-AVADFCK 325 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~ 325 (920)
+.... + .....+-++++|+++... .+..+...+......+.+|+++... .+.....
T Consensus 92 ~~~~~----~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 92 FARTA----P-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHhcC----C-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 21110 0 001235689999987653 3455666555545556777766432 2211111
Q ss_pred cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 326 QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 326 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
.. ...+++.+++.++....+.+.+..... . --.+....+++.++|.+--
T Consensus 151 sr--~~~~~~~~l~~~ei~~~l~~~~~~~~~--~---i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 151 SR--CAVFRFSPLKKEAVAERLRYIAENEGI--E---ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HH--hheeeeCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHH
Confidence 11 157899999999998888887643321 1 1245677888999998754
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=3.1e-05 Score=85.59 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred CCCCccccchhhHHHHHHHHhcC--C---------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 047503 168 IEDDEVVGIESARDILIGWLVNG--R---------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGREC 236 (920)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 236 (920)
+..+++.|+++.+++|.+.+... . ...+-+.++|++|+|||++|+.+++. ....| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc---
Confidence 33467899999999999887532 0 12456899999999999999999985 33333 2221
Q ss_pred CHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCc-------------hhhhHHHHh-
Q 047503 237 MKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKI-------------ELWGDVEHA- 301 (920)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~-------------~~~~~l~~~- 301 (920)
..++....+ +. .......+.+.. ...+.+|++|+++.. +.+..+...
T Consensus 189 -~~~l~~~~~---g~--------------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll 250 (364)
T TIGR01242 189 -GSELVRKYI---GE--------------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLL 250 (364)
T ss_pred -hHHHHHHhh---hH--------------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHH
Confidence 111111100 00 011122222222 346789999999753 111222222
Q ss_pred --ccC--CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHh
Q 047503 302 --LLD--NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKC 375 (920)
Q Consensus 302 --l~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c 375 (920)
+.. ...+.+||.||....... . .........+.+...+.++..++|..++....-. ... ....+++.+
T Consensus 251 ~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~--~~~----~~~~la~~t 324 (364)
T TIGR01242 251 AELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA--EDV----DLEAIAKMT 324 (364)
T ss_pred HHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC--ccC----CHHHHHHHc
Confidence 221 234677888887653221 1 1122234678999999999999999887544211 111 135667777
Q ss_pred CCch
Q 047503 376 GGLP 379 (920)
Q Consensus 376 ~glP 379 (920)
.|..
T Consensus 325 ~g~s 328 (364)
T TIGR01242 325 EGAS 328 (364)
T ss_pred CCCC
Confidence 7764
No 92
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=0.00014 Score=78.94 Aligned_cols=203 Identities=13% Similarity=0.136 Sum_probs=114.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc--CCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM--NHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
-..++|-++....+...+.++. -.+.+.|+|..|+||||+|+.+.+.-.-. ..+... .....+......+.+..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 3578999999999999998764 24578899999999999999887641110 001111 00111111112222221
Q ss_pred HHhh-------hccCCccccCCcCCHHHHHHHHHHHhc-----CCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEE-E
Q 047503 248 EFHQ-------LTGQSALGEMNNMEEKDLIIAVRQYLH-----DKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRI-M 312 (920)
Q Consensus 248 ~l~~-------~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i-i 312 (920)
.-.. .........-.....+++ ..+.+++. +++-++|+|+++... ....+...+-....++.+ +
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 1000 000000000012333443 24444443 466799999998763 455666666554444554 4
Q ss_pred EEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 313 LTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 313 vTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
+|++...+.....+. ...+.+.+++.++..+++.+..... . -..+....|++.++|.|..+..+.
T Consensus 177 it~~~~~llptIrSR--c~~i~l~pl~~~~~~~~L~~~~~~~----~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSR--CQPISLKPLDDDELKKALSHLGSSQ----G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhh--ccEEEecCCCHHHHHHHHHHhhccc----C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444443333222221 2689999999999999998743211 1 113456788999999998665443
No 93
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.06 E-value=8.8e-05 Score=72.98 Aligned_cols=176 Identities=22% Similarity=0.182 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHh---cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLV---NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++|+|-+.-++.+.-++. ...+...-+.++|++|+||||||+-+.+. ....|. +++... .+.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~k--------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IEK--------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC---S---------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hhh---------
Confidence 589999988888655544 23345778899999999999999999985 444442 222211 000
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccC--------CCC----------
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLD--------NKK---------- 307 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~--------~~~---------- 307 (920)
..++...+.+ + +++-+|.+|.+.... .-+.+..++-+ .+.
T Consensus 89 ------------------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 ------------------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ------------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ------------------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 0222222222 2 345577778886642 22222222211 111
Q ss_pred -CcEEEEEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 308 -GSRIMLTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 308 -gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
=+-|=.|||...+..-... .+.-...++..+.+|-..+..+.+.... .+-.++.+.+|+++|.|-|--+.-+-
T Consensus 149 ~FTligATTr~g~ls~pLrd-RFgi~~~l~~Y~~~el~~Iv~r~a~~l~-----i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD-RFGIVLRLEFYSEEELAKIVKRSARILN-----IEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT-TSSEEEE----THHHHHHHHHHCCHCTT------EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh-hcceecchhcCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 1234458887665443322 2224568999999999999988764332 23345788999999999996554443
Q ss_pred h
Q 047503 387 G 387 (920)
Q Consensus 387 ~ 387 (920)
.
T Consensus 223 ~ 223 (233)
T PF05496_consen 223 R 223 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00014 Score=83.83 Aligned_cols=183 Identities=16% Similarity=0.124 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccC-------------------CCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMN-------------------HFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~ 231 (920)
++++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+...-.. .|--++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 479999999999999998764 246789999999999999998866311010 011111222
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCch--hhhHHHHhccCC
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKIE--LWGDVEHALLDN 305 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~ 305 (920)
.+.. ...+.+...+... ..+++-++|+|+++... ....+...+-..
T Consensus 95 aAs~----------------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 95 AASN----------------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred cccc----------------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 1111 1112222222110 12566789999998654 355566666554
Q ss_pred CCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHH
Q 047503 306 KKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIV 383 (920)
Q Consensus 306 ~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~ 383 (920)
...+++|++|.+. .+...... ....+.+.+++.++....+.+.+-.... .--.+....|++.++|.+- |+.
T Consensus 147 p~~v~fILaTtd~~kL~~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi-----~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEKI-----AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCCcEEEEEeCCccccchHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcCC-----CcCHHHHHHHHHHhCCCHHHHHH
Confidence 4556777766543 22211111 1156888899999999888876643221 1224567889999998875 444
Q ss_pred HHHhhh
Q 047503 384 AVGGLL 389 (920)
Q Consensus 384 ~~~~~l 389 (920)
.+-.++
T Consensus 220 LLDqai 225 (709)
T PRK08691 220 LLDQAI 225 (709)
T ss_pred HHHHHH
Confidence 443333
No 95
>PF14516 AAA_35: AAA-like domain
Probab=98.04 E-value=0.0014 Score=71.13 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=126.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC-----CCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE-----CMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~~~i 245 (920)
+..|.|...-+++.+.|.+.+ ..+.|.|+-.+|||+|...+.+...- ..+ .++++++..- .+....++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 456788877778888887643 48899999999999999999875322 233 4567776542 2466677777
Q ss_pred HHHHhhhccCCc--cccCC--cCCHHHHHHHHHHHh-c--CCcEEEEEEcCCCchh----hhHHHHhcc---CC-C----
Q 047503 246 IKEFHQLTGQSA--LGEMN--NMEEKDLIIAVRQYL-H--DKNYMIVLDDVWKIEL----WGDVEHALL---DN-K---- 306 (920)
Q Consensus 246 ~~~l~~~~~~~~--~~~~~--~~~~~~l~~~l~~~L-~--~kr~LlVlDdv~~~~~----~~~l~~~l~---~~-~---- 306 (920)
+..+....+-.. ...+. .-+.......+.+++ . +++.+|++|+++..-. .+++...+. .. .
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 777766543221 00000 002234445555543 2 5899999999975421 122222221 11 1
Q ss_pred CCcEEEEEccchh--hhhhcccCC--ccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHH
Q 047503 307 KGSRIMLTTRHKA--VADFCKQSS--FVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAI 382 (920)
Q Consensus 307 ~gs~iivTtR~~~--v~~~~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai 382 (920)
..+-.++...+.+ ......... ....++|++++.+|...|..++.... . ....++|...+||+|.-+
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF------S---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC------C---HHHHHHHHHHHCCCHHHH
Confidence 1111122222211 111111111 12578999999999999998874322 1 122888999999999999
Q ss_pred HHHHhhhcCCCC
Q 047503 383 VAVGGLLSTKHG 394 (920)
Q Consensus 383 ~~~~~~l~~~~~ 394 (920)
..++..+.....
T Consensus 237 ~~~~~~l~~~~~ 248 (331)
T PF14516_consen 237 QKACYLLVEEQI 248 (331)
T ss_pred HHHHHHHHHccC
Confidence 999999977543
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00052 Score=77.40 Aligned_cols=189 Identities=11% Similarity=0.016 Sum_probs=108.5
Q ss_pred ccccchhh--HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 172 EVVGIESA--RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 172 ~~~Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-++|.... ......+....+....-+.|+|..|+|||+|++.+.+.......-..+++++ ..+++..+...+
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l 190 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDIL 190 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHH
Confidence 34565443 2233333333222345688999999999999999988421111112344443 456667776666
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hh-hHHHHhccC-CCCCcEEEEEccchh--h--
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LW-GDVEHALLD-NKKGSRIMLTTRHKA--V-- 320 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~~--v-- 320 (920)
... ......+++.++ ..-+||+||+.... .| +.+...+.. ...|..||+|+.... .
T Consensus 191 ~~~--------------~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 191 QKT--------------HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHh--------------hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhh
Confidence 432 011233444443 34488899996542 23 233333332 123456888866431 1
Q ss_pred -----hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHh
Q 047503 321 -----ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGG 387 (920)
Q Consensus 321 -----~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~ 387 (920)
...+.. .-+..+++++.++..+++.+++-...- . ..--+++..-|++.++|.|-.+..+..
T Consensus 256 l~~rL~SR~~~---Gl~~~L~~pd~e~r~~iL~~~~~~~gl--~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 256 FDNRLITRFNM---GLSIAIQKLDNKTATAIIKKEIKNQNI--K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred ccHHHHHHHhC---CceeccCCcCHHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 112222 267889999999999999998754310 0 122357888999999999876655543
No 97
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00012 Score=81.28 Aligned_cols=193 Identities=15% Similarity=0.065 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+..+..|..++..+. -.+.+.++|..|+||||+|+.+++...- ..... ...+.....- +.+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcHH----HHHHccCC
Confidence 478999999999999988765 2356889999999999999999774111 11000 0001111011 11111100
Q ss_pred hhccCCccccCCcCCHHH---HHHHHHHH-hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEE-Eccchhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKD---LIIAVRQY-LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIML-TTRHKAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~ 323 (920)
....+ .. ...+...+. +.+.+... ..++.-++|+|+++.. +.+..++..+-.......+|+ ||....+...
T Consensus 90 ~dviE-Id-aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 90 SDVLE-ID-AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred cccee-ec-hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 00000 00 000111121 22222211 2356679999999866 467777766655444555554 4444444332
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
..... ..|.+.+++.++..+.+.+.+.... ..--.+....|++.++|.+-
T Consensus 168 I~SRC--q~~~f~~ls~~~i~~~L~~i~~~Eg-----i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRC--QDFIFKKVPLSVLQDYSEKLCKIEN-----VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhh--heeeecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCChHH
Confidence 22211 6799999999999888887654321 11124567889999999874
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.03 E-value=0.00022 Score=79.11 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc--cc------------------CCCCceEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY--VM------------------NHFDCRAWI 230 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~------------------~~F~~~~wv 230 (920)
.+++|.+..++.+.+++..+. -.+.+.++|..|+||||+|+.+...-. .. .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 478999999999999997654 246788999999999999988865311 00 12221 222
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCC
Q 047503 231 TVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKG 308 (920)
Q Consensus 231 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 308 (920)
..+..... +.+++++..+... -..+++-++|+|+++.. ..+..+...+......
T Consensus 92 ~~~~~~~~-~~~~~l~~~~~~~-----------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 92 DAASNNGV-DDIREILDNVKYA-----------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred eccccCCH-HHHHHHHHHHhcC-----------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 22111111 1122222222110 01245558999998765 4566777777555556
Q ss_pred cEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 309 SRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 309 s~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
+.+|++|.+.. +........ ..+++.+++.++....+.+.+-.... . --.+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~--~~~~~~~~~~~~l~~~l~~~~~~~g~--~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRC--QRFDFKRIPLEDIVERLKKILDKEGI--K---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhhe--eEEEcCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 77766665443 222222211 57889999999998888876643221 1 113677888999999886554443
No 99
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.03 E-value=0.00016 Score=71.79 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=62.6
Q ss_pred CCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 047503 279 DKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASV 355 (920)
Q Consensus 279 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 355 (920)
+.+-++|+|+++.. +.++.+...+......+.+|++|++. .+....... ...+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr--~~~~~~~~~~~~~~~~~l~~~--g-i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR--CQVLPFPPLSEEALLQWLIRQ--G-I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh--cEEeeCCCCCHHHHHHHHHHc--C-C
Confidence 45678999999765 35777777776655567777776643 332222222 268999999999998888776 1 1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 356 SDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 356 ~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
. .+.+..|++.++|.|..
T Consensus 170 -----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -----C---HHHHHHHHHHcCCCccc
Confidence 1 35688999999998753
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.03 E-value=0.00016 Score=73.25 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=100.3
Q ss_pred ccccch-hhHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 172 EVVGIE-SARDILIGWLVNG-RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 172 ~~~Gr~-~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-++|-. +..-...+.+... +.....+.|+|..|+|||.|.+.+++.......=..+++++ ..++...+...+
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~ 83 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADAL 83 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHH
Confidence 334643 2233344444443 33345678999999999999999998622211222456654 455666666555
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hhhHHH-HhccC-CCCCcEEEEEccchh-----
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LWGDVE-HALLD-NKKGSRIMLTTRHKA----- 319 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~-~~l~~-~~~gs~iivTtR~~~----- 319 (920)
... . ...+++.++ .-=+|++||++... .|+... ..+.. ...|.+||+|++..-
T Consensus 84 ~~~------------~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 84 RDG------------E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HTT------------S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred Hcc------------c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 332 1 123344444 34578899997653 343322 22221 134678999996542
Q ss_pred ----hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 320 ----VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 320 ----v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
....+... ..+++++.+.++..+++.+.+....- .--++++.-|++++.+..-.+..+
T Consensus 147 ~~~~L~SRl~~G---l~~~l~~pd~~~r~~il~~~a~~~~~-----~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 147 LLPDLRSRLSWG---LVVELQPPDDEDRRRILQKKAKERGI-----ELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp S-HHHHHHHHCS---EEEEE----HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred cChhhhhhHhhc---chhhcCCCCHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHHhhcCCHHHHHHH
Confidence 11222222 68999999999999999998854421 123467777777777665444433
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00016 Score=83.76 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+..++.|...+..+. -.+.+.++|..|+||||+|+.+.+...-...+. ...+.... ...++.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~----~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECD----NCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCH----HHHHHH
Confidence 478999999999999887764 235678999999999999999876411100000 00011101 111111
Q ss_pred hhccCCcc--ccCCcCCHHHHH---HHHHH-HhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccc-hhhh
Q 047503 251 QLTGQSAL--GEMNNMEEKDLI---IAVRQ-YLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRH-KAVA 321 (920)
Q Consensus 251 ~~~~~~~~--~~~~~~~~~~l~---~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 321 (920)
....-+.. ........+++. ..+.. -..+++-++|+|+++.. +....++..+-......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00000000 000001112221 11111 12356779999999866 4566776666655556666655554 4333
Q ss_pred hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 322 DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
..+.+- ...+.+.+++.++....+.+..-... ...-.+....|++.++|.+--+..
T Consensus 164 ~TI~SR--C~~~~f~~Ls~~ei~~~L~~il~~e~-----i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSR--CLQFHLKALDVEQIRQQLEHILQAEQ-----IPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhh--heEeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 221111 27899999999999988887653221 111235567889999998764333
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00013 Score=83.10 Aligned_cols=200 Identities=14% Similarity=0.135 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+.-. |.-|... ..+.....-+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHHcCCC
Confidence 478999999999999987754 246788999999999999999876411 1112111 11111111111111000
Q ss_pred hhccCCccccCCcCCHHHHHHHH---HHH-hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAV---RQY-LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l---~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 323 (920)
..... . ........+++...+ ... ..+++-++|+|+++.. +.+..+...+-.....+.+|++| ....+...
T Consensus 88 ~Diie-I-daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVE-L-DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEE-e-ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 00000 0 000011112221111 110 1134447999999765 46777777766555556665554 44333322
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHHh
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVGG 387 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~~ 387 (920)
.... ...+++.+++.++....+.+.+..... .. -.+.+..+++.++|.+ .|+..+-.
T Consensus 166 I~SR--cq~ieF~~Ls~~eL~~~L~~il~kegi--~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISR--CQRYNFKKLNNSELQELLKSIAKKEKI--KI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhh--hhhcccCCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2211 168999999999998888876543211 11 1355678889999865 45555544
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00017 Score=83.41 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC--CCceEEEEeCCCCCHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH--FDCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
++++|-+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.-.-... ....-+ ..+.....-+.|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i--- 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI--- 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH---
Confidence 478998888899999888764 2467889999999999999988543100000 000000 001111111111
Q ss_pred HhhhccCCcc--ccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchh
Q 047503 249 FHQLTGQSAL--GEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKA 319 (920)
Q Consensus 249 l~~~~~~~~~--~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~ 319 (920)
.....-+.. ....+...+++.+.+... ..++.-++|||+++.. +.+..+...+-.....+++|++| ....
T Consensus 88 -~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 88 -DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred -HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 000000000 000011122222222110 1234558999999876 45667777666655566666555 4333
Q ss_pred hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHH
Q 047503 320 VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIV 383 (920)
Q Consensus 320 v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~ 383 (920)
+....... ...+++++++.++....+.+.+..... .--.+....|++.++|.+--+.
T Consensus 167 il~TIlSR--c~~~~f~~Ls~eei~~~L~~i~~~egi-----~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSR--CLQFNLRPMAPETVLEHLTQVLAAENV-----PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHh--ceeeecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33222211 178999999999999888876643221 1123567788889998765433
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00028 Score=77.02 Aligned_cols=200 Identities=12% Similarity=0.110 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCce------EEEEeCCCCCHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCR------AWITVGRECMKKDLLIK 244 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~------~wv~v~~~~~~~~~~~~ 244 (920)
.+++|-+..++.+.+.+..+. -.+.+.++|+.|+||+|+|..+.+.-.=....... .-+.+...+. .-+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---VARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---HHHH
Confidence 578999999999999998864 24578899999999999998775531000000000 0000000111 1111
Q ss_pred HHHHHhhhc-------cCCccccCCcCCHHHHHHHHHHHhc-----CCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcE
Q 047503 245 MIKEFHQLT-------GQSALGEMNNMEEKDLIIAVRQYLH-----DKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSR 310 (920)
Q Consensus 245 i~~~l~~~~-------~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 310 (920)
+...-.... .+.....-..+..++ ++.+.+.+. +.+-++|+||++.. .....+...+-....++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 110000000 000000001223344 333444442 45679999999765 356667666666555676
Q ss_pred EEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 311 IMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 311 iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
+|++|.... +.....+ ....+.+.+++.++..+++.+..... . .+....+++.++|.|..+..+.
T Consensus 174 ~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~~------~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPDL------P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhcccC------C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 777776653 3222222 22789999999999999998764211 1 1222678999999998665543
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00016 Score=81.23 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC------ccc-------------cCCCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN------QYV-------------MNHFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~------~~~-------------~~~F~~~~wv~ 231 (920)
++++|-+..++.+...+..+. -.+.+.++|..|+||||+|+.+.+. +.. .+.+.-++.++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 478999999998888887664 2357889999999999999988652 000 01122234444
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCc
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGS 309 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 309 (920)
.+....+.+ ++++++..... -..+++-++|+|+++.. +....+...+-.....+
T Consensus 92 aas~~~vdd-IR~Iie~~~~~-----------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 92 AASNTSVDD-IKVILENSCYL-----------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred cccCCCHHH-HHHHHHHHHhc-----------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 433322222 23333222110 01245668999999765 35667777776666667
Q ss_pred EEEEEc-cchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 310 RIMLTT-RHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 310 ~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
++|++| ....+...+.... ..+++.+++.++....+.+.+..... .--.+....|++.++|.+-.
T Consensus 148 ~fIlatte~~Kl~~tI~SRc--~~~~f~~l~~~el~~~L~~ia~~Egi-----~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRC--QRFDLQKIPTDKLVEHLVDIAKKENI-----EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEEEeCChHHHHHHHHHhh--eeeecccccHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 666655 3344443322222 78999999999999888887644321 11235567889999887653
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.99 E-value=9.7e-05 Score=75.99 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=97.1
Q ss_pred Cccccchh-hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIES-ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
+-++|-.. .+..+.++..... ...+.|+|+.|+|||+|++.+++. ....-..+.++++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~--~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEH--SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh------------
Confidence 34446322 3333444433332 457899999999999999999885 222223456666532100
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc---hhhhHHH-HhccC-CCCC-cEEEEEccchh----
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI---ELWGDVE-HALLD-NKKG-SRIMLTTRHKA---- 319 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iivTtR~~~---- 319 (920)
...+..+.+. + --+|++||+... ..|+... ..+.. ...| .++|+||+...
T Consensus 87 ---------------~~~~~~~~~~----~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 87 ---------------FVPEVLEGME----Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred ---------------hhHHHHHHhh----h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence 0011111111 1 248899999654 3555432 22221 1123 47899988552
Q ss_pred -----hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 320 -----VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 320 -----v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
....+.. ..++++.+++.++-.+++.+++.... -.--+++..-|++++.|..-++..+
T Consensus 147 ~~~~~L~SRl~~---g~~~~l~~~~~~~~~~~l~~~a~~~~-----~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 147 LGLPDLASRLDW---GQIYKLQPLSDEEKLQALQLRARLRG-----FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred cccHHHHHHHhC---CceeeecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 2222322 26899999999999999988664321 1223567788888888775444333
No 107
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1.2e-06 Score=98.74 Aligned_cols=122 Identities=23% Similarity=0.297 Sum_probs=70.3
Q ss_pred CCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecc
Q 047503 577 FKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYH 656 (920)
Q Consensus 577 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 656 (920)
+..+..+++..+.+...-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 3444445555555555444456666677777777666666555666677777777777666664 356666677777766
Q ss_pred cCCCcccccccccCccCCcccCccccccccCchhHHh--cccCCCCcEEEEE
Q 047503 657 SDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKE--LRKLRQLRKLGIQ 706 (920)
Q Consensus 657 ~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~--l~~l~~L~~L~l~ 706 (920)
|.. .-..++..+++|+.+++..+....... +..+.+|+.+.+.
T Consensus 150 N~i-------~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 150 NLI-------SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred Ccc-------hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 522 112234446666666666655433333 3555555555555
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00023 Score=81.32 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-------------------CCCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM-------------------NHFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~ 231 (920)
+++||-+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.-.-. +.|.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 478999999999999997764 24567899999999999999887631111 1111122232
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCc
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGS 309 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 309 (920)
.+....+.+ ++++++.+... -..++.-++|+|+++.. +....+...+-.....+
T Consensus 95 aas~~~v~~-iR~l~~~~~~~-----------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 95 AASRTKVED-TRELLDNIPYA-----------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred ccccCCHHH-HHHHHHHHhhc-----------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 222212211 12222221110 01256668999999875 45666766666655567
Q ss_pred EEEEEccc-hhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHh
Q 047503 310 RIMLTTRH-KAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGG 387 (920)
Q Consensus 310 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~ 387 (920)
++|++|.+ ..+....... ...+++++++.++....+.+.+-.... .--.+....|++.++|.+- |+..+-.
T Consensus 151 ~fIlattd~~kl~~tI~SR--c~~~~f~~l~~~~i~~~l~~il~~egi-----~~~~~al~~ia~~s~GslR~al~lLdq 223 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSR--CLQFHLAQLPPLQIAAHCQHLLKEENV-----EFENAALDLLARAANGSVRDALSLLDQ 223 (509)
T ss_pred EEEEEECChHhchHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 77665543 3332211111 167889999999887776665533211 1123456778888998875 3333433
Q ss_pred hh
Q 047503 388 LL 389 (920)
Q Consensus 388 ~l 389 (920)
.+
T Consensus 224 ~i 225 (509)
T PRK14958 224 SI 225 (509)
T ss_pred HH
Confidence 33
No 109
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.96 E-value=0.00037 Score=75.77 Aligned_cols=147 Identities=17% Similarity=0.260 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.++..+.+..++..+. -..++.++|..|+||||+|+.+++. .... ...++.+. .. .+.+++.+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHHH
Confidence 578999999999999998653 3568888999999999999999884 2221 23344433 11 122222221111
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchh-hhhhccc
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKA-VADFCKQ 326 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~ 326 (920)
.. . .+.+.+-++|+||++.. +....+...+.....++++|+||.... +......
T Consensus 93 ~~--------------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 93 ST--------------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred Hh--------------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 10 0 01134568899999765 223334444444456778888886543 1111111
Q ss_pred CCccceeecCCCCHHHHHHHHHH
Q 047503 327 SSFVQVHELEALPAVEAWRLFCR 349 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf~~ 349 (920)
.. ..+.++..+.++..+++..
T Consensus 151 R~--~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RC--RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hc--eEEEeCCCCHHHHHHHHHH
Confidence 11 4567777777777665543
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00015 Score=80.79 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE-eCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT-VGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i~~~l 249 (920)
++++|-+..++.|..++.++. -.+.+.++|+.|+||||+|+.+.+.-.-........|.. +...+..-..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 478999999999999887764 245688999999999999998876411111111011110 000110000001110000
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchhhh
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKAVA 321 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 321 (920)
...... . ........+++.. +.+.+ .+++-++|+|+++.. +.++.+...+......+.+|++| +...+.
T Consensus 95 ~~n~~~-~-~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 95 SLNISE-F-DAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCeEe-e-cccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 000000 0 0000111222222 22222 245668999999865 46778888777666667666555 444443
Q ss_pred hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHH
Q 047503 322 DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVG 386 (920)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~ 386 (920)
...... ...+++.+++.++....+...+-... ..--.+.+..|++.++|.+- |+..+-
T Consensus 172 ~tl~sR--~~~v~f~~l~~~ei~~~l~~~~~~~g-----~~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 172 ATIASR--CQRFNFKRIPLEEIQQQLQGICEAEG-----ISVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322211 16789999999999888877653221 11224677889999999774 444433
No 111
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.1e-05 Score=58.00 Aligned_cols=39 Identities=28% Similarity=0.533 Sum_probs=25.1
Q ss_pred cCceeeecCCCccccCccccCCCCCcEEeecCCcccccc
Q 047503 602 HLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLP 640 (920)
Q Consensus 602 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 640 (920)
+|++|++++|.|+.+|..+++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777777777777666667777777777777666554
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.93 E-value=0.00028 Score=72.55 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=94.5
Q ss_pred ccchhhH-HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhh
Q 047503 174 VGIESAR-DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQL 252 (920)
Q Consensus 174 ~Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (920)
.|..... ..+.++... ......+.|+|..|+|||+||+.+++... ... ..+.+++.... .. .
T Consensus 22 ~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~------~~----~---- 84 (227)
T PRK08903 22 AGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASP------LL----A---- 84 (227)
T ss_pred cCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHh------HH----H----
Confidence 3554443 334444432 22346788999999999999999988521 122 23444443221 00 0
Q ss_pred ccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhh--HHHHhccCC-CCCc-EEEEEccchhhhhhcc---
Q 047503 253 TGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWG--DVEHALLDN-KKGS-RIMLTTRHKAVADFCK--- 325 (920)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~--~l~~~l~~~-~~gs-~iivTtR~~~v~~~~~--- 325 (920)
+ ... ...-+||+||++....+. .+...+... ..+. .+|+|++.........
T Consensus 85 --------------------~-~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 --------------------F-DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred --------------------H-hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 011 233478999997654322 333333321 2344 4667766433221110
Q ss_pred --cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhh
Q 047503 326 --QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLL 389 (920)
Q Consensus 326 --~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l 389 (920)
.......+++.++++++-..++.+.+-... ..--++....+++.+.|.+..+..+-..+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG-----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 101126789999999887777766442211 11224677788888999988877666554
No 113
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.91 E-value=0.00038 Score=73.64 Aligned_cols=159 Identities=11% Similarity=0.157 Sum_probs=85.8
Q ss_pred ccccchhhHHHHHHHHh---cC----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 172 EVVGIESARDILIGWLV---NG----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~---~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
.++|.++.+++|.++.. .. .....-+.++|.+|.||||+|+.+++.....+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 57787777777655322 10 11223578999999999999977765321112221123555442
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-----------hhhhHHHHhccCCCC
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-----------ELWGDVEHALLDNKK 307 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~ 307 (920)
.++ +..+.+. +.......+.+. ..-+|+||++... +.++.+...+.....
T Consensus 99 ~~l----~~~~~g~------------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~ 159 (284)
T TIGR02880 99 DDL----VGQYIGH------------TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRD 159 (284)
T ss_pred HHH----hHhhccc------------chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCC
Confidence 122 2221111 111122222222 3368899999632 233445555555555
Q ss_pred CcEEEEEccchhhhhhcccC-----CccceeecCCCCHHHHHHHHHHHhcC
Q 047503 308 GSRIMLTTRHKAVADFCKQS-----SFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 308 gs~iivTtR~~~v~~~~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
+.+||+++............ .....+++++++.+|...++.+.+-.
T Consensus 160 ~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 160 DLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 66777777644322211100 11256899999999999999887643
No 114
>PRK05642 DNA replication initiation factor; Validated
Probab=97.90 E-value=0.00036 Score=71.66 Aligned_cols=153 Identities=16% Similarity=0.241 Sum_probs=89.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
...+.|+|..|+|||.|++.+++. ....-..++|++.. ++... .. .+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~------~~~~~---------------------~~----~~ 91 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA------ELLDR---------------------GP----EL 91 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH------HHHhh---------------------hH----HH
Confidence 357889999999999999999874 22222456777652 11110 01 12
Q ss_pred HHHhcCCcEEEEEEcCCCc---hhhhH-HHHhccC-CCCCcEEEEEccchhh-hhhc-----ccCCccceeecCCCCHHH
Q 047503 274 RQYLHDKNYMIVLDDVWKI---ELWGD-VEHALLD-NKKGSRIMLTTRHKAV-ADFC-----KQSSFVQVHELEALPAVE 342 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~v-~~~~-----~~~~~~~~~~l~~L~~~~ 342 (920)
.+.+.+- =++|+||+... ..|+. +...+.. ...|..+|+|++...- .... .......++++.+++.++
T Consensus 92 ~~~~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 92 LDNLEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred HHhhhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 2222222 26889999643 35654 3333332 2346778888875321 1110 000112678999999999
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 343 AWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 343 ~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
-..++++++.... ... -+++..-|++++.|..-.+..+
T Consensus 171 ~~~il~~ka~~~~--~~l---~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 171 KLRALQLRASRRG--LHL---TDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHHHHcC--CCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 9999997664431 111 2477788888888875544443
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0004 Score=79.95 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-------------------CCCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM-------------------NHFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~ 231 (920)
++++|-+..++.+..++..+. -.+.+.++|..|+||||+|+.+.+.-.-. +.|.-++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 478999999999999998754 24567899999999999999986641100 0111122222
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCc
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGS 309 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 309 (920)
.+....+ +.+++++..+... -..+++-++|+|+++... ....+...+-.....+
T Consensus 95 ~~~~~~v-d~ir~l~~~~~~~-----------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 95 AASNTQV-DAMRELLDNAQYA-----------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred ccccCCH-HHHHHHHHHHhhC-----------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 2111111 1112222211100 013566799999998663 4666777766655566
Q ss_pred EEEEEccc-hhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHh
Q 047503 310 RIMLTTRH-KAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGG 387 (920)
Q Consensus 310 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~ 387 (920)
.+|++|.+ ..+...+.. ....+++++++.++....+.+.+..... ..-.+....|++.++|.+- |+..+-.
T Consensus 151 ~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi-----~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 151 KFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENI-----PFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66665543 332211111 1167899999999998888776532211 1123556778889999774 4444433
Q ss_pred hh
Q 047503 388 LL 389 (920)
Q Consensus 388 ~l 389 (920)
++
T Consensus 224 ai 225 (527)
T PRK14969 224 AI 225 (527)
T ss_pred HH
Confidence 33
No 116
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=0.00015 Score=80.57 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
.+++.|+++.+++|.+.+... -...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 457899999999998876421 123567899999999999999999885 2222 333321
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCc-------------hhhhHHHHhc--
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKI-------------ELWGDVEHAL-- 302 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~-------------~~~~~l~~~l-- 302 (920)
.++... ..+ .. ......+.+.. ...+.+|++||++.. +.+..+...+
T Consensus 199 ~~l~~~----~~g------------~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 261 (389)
T PRK03992 199 SELVQK----FIG------------EG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE 261 (389)
T ss_pred HHHhHh----hcc------------ch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh
Confidence 111111 000 00 11222222222 346789999999753 1122233322
Q ss_pred -cC--CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCC
Q 047503 303 -LD--NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGG 377 (920)
Q Consensus 303 -~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~g 377 (920)
.. ...+..||.||....... . .........+++++.+.++..++|+.+.....- ..... ...+++.+.|
T Consensus 262 ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--~~~~~----~~~la~~t~g 335 (389)
T PRK03992 262 MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--ADDVD----LEELAELTEG 335 (389)
T ss_pred ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--CCcCC----HHHHHHHcCC
Confidence 11 123567777776654322 1 122223467999999999999999987654321 11112 3556666766
Q ss_pred c
Q 047503 378 L 378 (920)
Q Consensus 378 l 378 (920)
.
T Consensus 336 ~ 336 (389)
T PRK03992 336 A 336 (389)
T ss_pred C
Confidence 5
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00049 Score=76.38 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc------cCCCCceE-EEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV------MNHFDCRA-WITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~v~~~~~~~~~~~ 243 (920)
++++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.+...- ...|...+ -+........ +.++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 477999999999999997753 3468889999999999999998764111 01121111 1111000001 1122
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchhh
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKAV 320 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v 320 (920)
++++++... -..+++-++|+|+++.. ..+..+...+......+.+|++| ....+
T Consensus 95 ~l~~~~~~~-----------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 95 NLIDQVRIP-----------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HHHHHHhhc-----------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 222221100 01245568999999765 34666666665444455565555 33333
Q ss_pred hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHh
Q 047503 321 ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGG 387 (920)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~ 387 (920)
........ ..++.+++++++....+...+..... . --.+....|++.++|.+- ++..+-.
T Consensus 152 ~~~l~sr~--~~v~~~~~~~~~l~~~l~~~~~~~g~--~---i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 152 IPTILSRC--QIFDFKRITIKDIKEHLAGIAVKEGI--K---FEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred CHHHHhcc--eeEecCCccHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 22222111 57899999999998888876644321 1 123677788888988654 4444433
No 118
>CHL00181 cbbX CbbX; Provisional
Probab=97.86 E-value=0.00057 Score=72.25 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=87.1
Q ss_pred CccccchhhHHHHHHHHh---c-------C---CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 047503 171 DEVVGIESARDILIGWLV---N-------G---RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM 237 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~---~-------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (920)
.+++|.++.+++|.++.. - + ......+.++|.+|+||||+|+.+++.....+.-...-|+.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~---- 98 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT---- 98 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----
Confidence 367888777776654431 1 0 1123457899999999999999997742111111222355554
Q ss_pred HHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-----------hhhhHHHHhccCCC
Q 047503 238 KKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-----------ELWGDVEHALLDNK 306 (920)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~ 306 (920)
..++ .....+. ........+.+. ..-+|++|++... +..+.+...+.+..
T Consensus 99 ~~~l----~~~~~g~------------~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~ 159 (287)
T CHL00181 99 RDDL----VGQYIGH------------TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR 159 (287)
T ss_pred HHHH----HHHHhcc------------chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC
Confidence 1222 2211111 011112222221 2348999999652 12233444454445
Q ss_pred CCcEEEEEccchhhhhhccc-----CCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 307 KGSRIMLTTRHKAVADFCKQ-----SSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 307 ~gs~iivTtR~~~v~~~~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
.+.+||+++........... ......+.+++++.++..+++.+.+-.
T Consensus 160 ~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 160 DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 56778788765443221110 011257899999999999998887644
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.00056 Score=73.50 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=132.9
Q ss_pred CCccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
+..++||+.+++.+.+|+... .+...-+-|.|.+|.|||.+...|+.+..-...=-+++++....--....++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 568999999999999999764 234567889999999999999999987322211124577766655677888999888
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCC--cEEEEEEcCCCch--hhhHHHHhcc-CCCCCcEEEEEccchhh--
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDK--NYMIVLDDVWKIE--LWGDVEHALL-DNKKGSRIMLTTRHKAV-- 320 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iivTtR~~~v-- 320 (920)
.+....... . ...+....+.+...+. .+|+|+|.++... .-+.+...|. ..-.++++|+.---..+
T Consensus 229 ~~~q~~~s~------~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 229 SLLQDLVSP------G-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHhcCC------c-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 884432221 0 1145566777777653 4899999987542 1111111111 11235555543221110
Q ss_pred -----hhhcc-cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCC
Q 047503 321 -----ADFCK-QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHG 394 (920)
Q Consensus 321 -----~~~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~ 394 (920)
..... .......+...|-+.++..++|..+.-........+..++-.|++++...|.+--|+.+.-+.+.--
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~-- 379 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA-- 379 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH--
Confidence 01000 1122367889999999999999998754432222233444445555555555556666665544321
Q ss_pred ChHHHHHH
Q 047503 395 SVSEWRRS 402 (920)
Q Consensus 395 ~~~~w~~~ 402 (920)
..+|+..
T Consensus 380 -E~e~r~~ 386 (529)
T KOG2227|consen 380 -EIEKRKI 386 (529)
T ss_pred -HHHHhhc
Confidence 3455555
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.85 E-value=0.0016 Score=73.18 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=99.3
Q ss_pred cccchhhH--HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHHH
Q 047503 173 VVGIESAR--DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF--DCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 173 ~~Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
++|.+... ..+..+..........+.|+|..|+|||+|++.+++. +.... ..+++++ ..++..++...
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~ 184 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNA 184 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHH
Confidence 55755442 2233333332223456889999999999999999985 32222 2455654 33444555544
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hhh-HHHHhccC-CCCCcEEEEEccch-h-hh
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LWG-DVEHALLD-NKKGSRIMLTTRHK-A-VA 321 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~~-~-v~ 321 (920)
+... ..+. +.+.+++ .-+|||||++... .+. .+...+.. ...|..+|+|+... . +.
T Consensus 185 ~~~~------------~~~~----~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 185 LRNN------------KMEE----FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred HHcC------------CHHH----HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 4321 1122 2333332 3488999997542 222 23332221 12345677777642 1 11
Q ss_pred h---hc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 322 D---FC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 322 ~---~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
. .. ........+.+.+.+.++-..++.+.+..... .. -+++...|++++.|..-.
T Consensus 248 ~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~--~l---~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 248 GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL--EL---PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHhcCCCHHH
Confidence 1 11 11111257899999999999999998754321 11 246778888888887653
No 121
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00052 Score=82.37 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccC----------------------CCCceE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMN----------------------HFDCRA 228 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----------------------~F~~~~ 228 (920)
.+++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+...-.. +++ ++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~ 92 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VT 92 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EE
Confidence 478999999999999998764 236788999999999999999876411001 111 11
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH-----hcCCcEEEEEEcCCCc--hhhhHHHHh
Q 047503 229 WITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY-----LHDKNYMIVLDDVWKI--ELWGDVEHA 301 (920)
Q Consensus 229 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~ 301 (920)
++.... +...+++.. +++. ..++.-++|||+++.. +.+..|+..
T Consensus 93 eidaas----------------------------~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~ 143 (824)
T PRK07764 93 EIDAAS----------------------------HGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKI 143 (824)
T ss_pred Eecccc----------------------------cCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHH
Confidence 221111 111222221 2111 2355568999999876 467777777
Q ss_pred ccCCCCCcEEEEEcc-chhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 302 LLDNKKGSRIMLTTR-HKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 302 l~~~~~gs~iivTtR-~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
+-.-...+.+|++|. ...+...+.... ..|++.+++.++....+.+..-.... .--.+....|++.++|.+.
T Consensus 144 LEEpP~~~~fIl~tt~~~kLl~TIrSRc--~~v~F~~l~~~~l~~~L~~il~~EGv-----~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 144 VEEPPEHLKFIFATTEPDKVIGTIRSRT--HHYPFRLVPPEVMRGYLERICAQEGV-----PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhhe--eEEEeeCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHH
Confidence 776666666665554 334433222222 78999999999988888775432211 1123456778999999874
Q ss_pred -HHHHHHhhh
Q 047503 381 -AIVAVGGLL 389 (920)
Q Consensus 381 -ai~~~~~~l 389 (920)
++..+-.++
T Consensus 217 ~Al~eLEKLi 226 (824)
T PRK07764 217 DSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHH
Confidence 444443333
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00056 Score=79.31 Aligned_cols=200 Identities=15% Similarity=0.110 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC--ceEEEEeCCCCCHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD--CRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
.+++|.+..++.|..++..+. -.+-+.++|..|+||||+|+.+.+.-.-..... ...+- .+.....-+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcC
Confidence 578999999999999998764 245788999999999999999876411111000 00000 00000000111100
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEc-cchhh
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTT-RHKAV 320 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v 320 (920)
-....-+- ........+++.. +.+.+ .+++-++|+|+++... ..+.+...+-.....+.+|++| ....+
T Consensus 99 ~h~Dv~e~--~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 99 RHVDVLEM--DAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred CCCceEEe--cccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 00000000 0000111222221 11111 2455689999997663 4666776666655567666555 43433
Q ss_pred hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 321 ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
...+.... ..+++.+++.++....+.+.+..... .--.+....|++.++|.+.-+...
T Consensus 176 l~tI~SRc--q~~~f~~l~~~el~~~L~~i~~kegi-----~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRC--QRFDLRRIEADVLAAHLSRIAAKEGV-----EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhhe--eEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32222211 68999999999999888887643221 112356788899999987654433
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.83 E-value=2.9e-05 Score=83.38 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHHHHHHHHhhhccCCccccCCcCCH-HHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE--CMKKDLLIKMIKEFHQLTGQSALGEMNNMEE-KDLII 271 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~~ 271 (920)
..++|+|.+|+|||||++.+++.. ..++|+..+||.+.+. .++.++++.+...+-...-..++. ..... .....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I-~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~--~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAI-TRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAS--RHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhh-cccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChH--HHHHHHHHHHH
Confidence 578999999999999999999973 3347999999999876 788888888754333221111000 00000 11112
Q ss_pred HHHHH-hcCCcEEEEEEcCCCc
Q 047503 272 AVRQY-LHDKNYMIVLDDVWKI 292 (920)
Q Consensus 272 ~l~~~-L~~kr~LlVlDdv~~~ 292 (920)
..+.. -.|++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 2579999999999543
No 124
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.82 E-value=0.00046 Score=72.19 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=109.3
Q ss_pred CCccccchhhHHHHHHHHhcCCC-CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNGRK-QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
++.+.+|+..+..+...+...+. -++.|.|.|.+|.|||.+.+++.+.. .. ..+|+++-+.|+.+.++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 56788999999999999987654 35667899999999999999999864 22 36899999999999999999999
Q ss_pred HhhhccCCccccCCc--CCHHHHHHHHHHH--hc--CCcEEEEEEcCCCchhhhHHH-Hh---ccC-CCCCcEEEEEccc
Q 047503 249 FHQLTGQSALGEMNN--MEEKDLIIAVRQY--LH--DKNYMIVLDDVWKIELWGDVE-HA---LLD-NKKGSRIMLTTRH 317 (920)
Q Consensus 249 l~~~~~~~~~~~~~~--~~~~~l~~~l~~~--L~--~kr~LlVlDdv~~~~~~~~l~-~~---l~~-~~~gs~iivTtR~ 317 (920)
..... ..+...+. .........+.++ .. ++.++||||+++...+.+.+. .. ++. .....-+|+++-.
T Consensus 80 ~~~~d--~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 80 SQLAD--KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred hccCC--CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 85221 11111111 1122333444442 22 357999999998776555432 11 111 1112333443332
Q ss_pred hhhhhh---cccCCccceeecCCCCHHHHHHHHHHH
Q 047503 318 KAVADF---CKQSSFVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 318 ~~v~~~---~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
.--... ++. ....++..+.-+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~-~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGT-LEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCC-CCceEEecCCCCHHHHHHHHhcC
Confidence 221211 222 22356677888889988888664
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00055 Score=79.50 Aligned_cols=207 Identities=13% Similarity=0.080 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE-eCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT-VGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i~~~l 249 (920)
.+++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+.+.-.-...++.-.|.. +...+..-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 478999999999999887653 235688999999999999988766411111110001110 001111111111110000
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchhhhh
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKAVAD 322 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~ 322 (920)
...... .........+++...+... ..+++-++|+|+++.. ...+.+...+-.....+.+|++| +...+..
T Consensus 95 ~~n~~~--~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISE--FDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEE--ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 000000 0000011123332222211 2345668999999766 35667777776655556655444 4444433
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHHh
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVGG 387 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~~ 387 (920)
.+... ...+++.+++.++....+.+.+..... .--.+.+..|++.++|.. .|+..+-.
T Consensus 173 TI~SR--c~~vef~~l~~~ei~~~L~~i~~~egi-----~I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 173 TIASR--CQRFNFKRIPLDEIQSQLQMICRAEGI-----QIDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred HHHhh--ceEEecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 22221 278999999999988777765532210 112456788999999954 45444443
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.80 E-value=0.00025 Score=74.48 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=82.4
Q ss_pred ccccchhhHHHHHHHHhc-------------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 172 EVVGIESARDILIGWLVN-------------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
.++|.+..+++|.+.... ..+...-+.++|++|+||||+|+.+++...-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 578988888776543211 122456788999999999999999976411111111112333321
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc----------hhhhHHHHhccCCCCC
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI----------ELWGDVEHALLDNKKG 308 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~g 308 (920)
.++....+ + .........+... ..-+|++|++... +..+.+...+......
T Consensus 83 ~~l~~~~~----g------------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 83 ADLVGEYI----G------------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred HHhhhhhc----c------------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 11111100 0 0011122222221 2358999999753 1233344444343333
Q ss_pred cEEEEEccchhhhh------hcccCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 309 SRIMLTTRHKAVAD------FCKQSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 309 s~iivTtR~~~v~~------~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
..+|+++...+... .... .....+.+++++.++..+++.+.+..
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~s-Rf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRS-RFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHh-ccceEEEECCCCHHHHHHHHHHHHHH
Confidence 45566655433211 1111 11246889999999999999877643
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.80 E-value=0.0018 Score=73.87 Aligned_cols=204 Identities=14% Similarity=0.134 Sum_probs=110.5
Q ss_pred cccchhh--HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHHH
Q 047503 173 VVGIESA--RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF--DCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 173 ~~Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
++|.... ......+....+....-+.|+|..|+|||+||+.+++. ....+ ..+++++. .++..++...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 4565443 23333333332223456889999999999999999986 33333 23455543 3444444444
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hh-hHHHHhccC-CCCCcEEEEEccchh--hh
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LW-GDVEHALLD-NKKGSRIMLTTRHKA--VA 321 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~~--v~ 321 (920)
+... .. ..+.+.++ +.-+|||||++... .+ +.+...+.. ...|..||+||.... +.
T Consensus 197 ~~~~------------~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 197 LRNN------------TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHcC------------cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 4221 11 22333333 34489999996531 12 233332221 112455777776431 11
Q ss_pred ---hhcc-cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH----HHHHHhh--hcC
Q 047503 322 ---DFCK-QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA----IVAVGGL--LST 391 (920)
Q Consensus 322 ---~~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla----i~~~~~~--l~~ 391 (920)
.... .......+++++.+.++...++.+.+.... .. --+++...|++.+.|..-. +..+..+ +..
T Consensus 260 ~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~---l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~ 334 (450)
T PRK00149 260 GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--ID---LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTG 334 (450)
T ss_pred HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CC---CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC
Confidence 1111 111125799999999999999999875421 11 2246778888888887553 3333222 122
Q ss_pred CCCChHHHHHHHhcc
Q 047503 392 KHGSVSEWRRSLEGL 406 (920)
Q Consensus 392 ~~~~~~~w~~~~~~~ 406 (920)
..-+....+.++..+
T Consensus 335 ~~it~~~~~~~l~~~ 349 (450)
T PRK00149 335 KPITLELAKEALKDL 349 (450)
T ss_pred CCCCHHHHHHHHHHh
Confidence 222466666666654
No 128
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00084 Score=77.46 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.-.-....+ + ..+..-..-+.+...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcccC
Confidence 478999999999999998764 345688999999999999999876411000000 0 00000000000000000
Q ss_pred hhccCCccccCCcCCHHHH---HHHHHHH-hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDL---IIAVRQY-LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 323 (920)
....--......+...+++ ...+... ..+++-++|+|+++.. +....++..+-.....+.+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 0000000000000111221 1111111 1245668999999765 46667777777655566666554 44444332
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHHhhhc
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVGGLLS 390 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~~~l~ 390 (920)
+... ...+++.+++.++..+.+.+.+..... .--.+....|++.++|.+ -|+..+-.++.
T Consensus 165 I~SR--c~~~~F~~l~~~~i~~~L~~i~~~egi-----~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 165 IRSR--THHYPFRLLPPRTMRALIARICEQEGV-----VVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHh--ceEEEeeCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 2221 278999999999988888776543211 112345677888999976 45555555443
No 129
>PLN03150 hypothetical protein; Provisional
Probab=97.79 E-value=1.8e-05 Score=93.60 Aligned_cols=111 Identities=19% Similarity=0.104 Sum_probs=87.8
Q ss_pred cccEEEEecc--CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeec
Q 047503 750 YLEHLYLVGS--MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLL 827 (920)
Q Consensus 750 ~L~~L~L~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 827 (920)
.++.|+|+++ .+.+|..+..+++|+.|+|++|.+.+..++.++.+++|+.|+|++|.+...++...+.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4677788776 35788888899999999999999888888888999999999999888877777777788999999999
Q ss_pred cCCCCceeeEcCCC-CccccEEEEecCCCCCccC
Q 047503 828 DLKGVTLMMIDKGA-MPCLRELKIGPCPLLKEIP 860 (920)
Q Consensus 828 ~~~~l~~~~~~~~~-~~~L~~L~l~~c~~l~~lp 860 (920)
+|.....+|...+. +.++..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 87655566655443 3567788888888766554
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0009 Score=76.93 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+..++.|..++.++. -...+.++|..|+||||+|+.+.+...-....+ ...++.-..-+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 478898888888888887653 246788999999999999999877421111000 001111111111110000
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHH-----hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccc-hhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQY-----LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRH-KAVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 322 (920)
..... .....+...+++. .+.+. ..+++-+||+|+++.. +.+..+...+-.......+|++|.. ..+..
T Consensus 88 pDv~e--Id~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 88 VDVVE--IDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CceEE--EecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 00000 0000011112111 12222 2356679999999766 4566777766544445556665544 44332
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHHhhhc
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVGGLLS 390 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~~~l~ 390 (920)
.+... ...+++.+++.++....+.+.+..... .-..+.+..|++.++|.+ .|+..+..++.
T Consensus 165 TI~SR--cq~i~F~pLs~~eL~~~L~~il~~egi-----~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 165 TIVSR--CQHFTFTRLSEAGLEAHLTKVLGREGV-----DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHhh--hhccccCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22111 167899999999999888876543221 112356778888999864 67777765553
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00081 Score=78.52 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.- ...+.. ..+ ..+... ... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~-~~~----~pC~~C---~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKT-DLL----EPCQEC---IEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh-cccccC-CCC----CchhHH---HHh---hc
Confidence 478999999999999998754 35677899999999999999986631 000000 000 000000 000 00
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEE-EEccchhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIM-LTTRHKAVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~ 322 (920)
....--..........+++ +.+.+.+ .+++-++|+|+++.. +.+..+...+-.....+.+| +|++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000000000000111221 1222222 256669999999765 46777776666554455555 4544444433
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHh
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGG 387 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~ 387 (920)
..... ...+++.+++.++....+...+..... ..-.+.+..|++.++|.+- |+..+-.
T Consensus 164 TI~SR--cq~ieF~~L~~eeI~~~L~~il~kegI-----~id~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 164 TILSR--VQRFNFRRISEDEIVSRLEFILEKENI-----SYEKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred HHHhh--ceeEEccCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22221 168999999999998888775533211 1113457788999988764 4444443
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.9e-05 Score=56.73 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=35.3
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccC
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLP 617 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp 617 (920)
++|++|++++|.++.+|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999988999999999999999998775
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00095 Score=78.28 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.-.-.... .....+......+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCC
Confidence 478999999999999887754 24677899999999999999987641100000 00011112222222221111
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccc-hhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRH-KAVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 322 (920)
...-+ . ........+++. .+.+.+ .+++-++|+|+++.. +..+.+...+-.....+.+|++|.. ..+..
T Consensus 89 ~d~~~-i-~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 89 VDVIE-M-DAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CeEEE-E-eccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 00000 0 000111222222 122222 245678999999765 4566677666655556666665543 33332
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
...... ..+++.+++.++....+.+.+..... . --.+.+..|++.++|.+..+..
T Consensus 166 tI~SR~--~~i~f~~l~~~el~~~L~~~a~~egl--~---i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 166 TILSRC--QRFDFHRHSVADMAAHLRKIAAAEGI--N---LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHhcc--ceeeCCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 222211 67889999999988888877643321 1 1235678899999998864443
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00094 Score=78.11 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---------------------ccCCCCceEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---------------------VMNHFDCRAW 229 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~w 229 (920)
++++|-+..++.|..++..+. -.+.+.++|..|+||||+|+.+..... ...+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 478999999999999998764 246788999999999999988766311 0112331 22
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCC
Q 047503 230 ITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKK 307 (920)
Q Consensus 230 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 307 (920)
+..+..... +.+++++.++... -..+++=++|+|+++.. +.++.+...+-....
T Consensus 95 ld~~~~~~v-d~Ir~li~~~~~~-----------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 95 LDAASNNSV-DDIRNLIEQVRIP-----------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred ecccccCCH-HHHHHHHHHHhhC-----------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 222211111 1122222222110 01235558899999765 457778777776655
Q ss_pred CcEEEEEc-cchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHH
Q 047503 308 GSRIMLTT-RHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAV 385 (920)
Q Consensus 308 gs~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~ 385 (920)
.+.+|++| ....+........ ..+++.+++.++....+.+.+....- .--.+.+..|++.++|..- |+..+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc--~iv~f~~ls~~ei~~~L~~ia~~egi-----~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRC--QIFDFNRIQVADIVNHLQYVASKEGI-----TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhh--heeecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666544 4444443322222 78999999999999888876543221 1123567888999999764 44433
No 135
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=1.2e-05 Score=80.39 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=124.0
Q ss_pred cCCCCcEEEEEecCC-cchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccC---CCCCccccCCC
Q 047503 696 KLRQLRKLGIQLTND-DGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSM---KNLPDWIFKLK 771 (920)
Q Consensus 696 ~l~~L~~L~l~~~~~-~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~lp~~~~~l~ 771 (920)
..+.++.+++..|.. ....+...+..+|+|+.|+|++|.....+ ..+..+..+|+.|.|.|.. ....+.+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 345677778774432 44567778889999999999999776543 3443333489999998852 34455566778
Q ss_pred CcceEEEEeeccCCCcc--cccC-CCcccceeEEecccCC--CeeeEccCCccccceeeeccCCCCceeeE--cCCCCcc
Q 047503 772 NLVRIGLYWSELTNDPM--NVLQ-ALPNLLELRLRDAYDY--EKLHFKDGWFPRLQRLVLLDLKGVTLMMI--DKGAMPC 844 (920)
Q Consensus 772 ~L~~L~L~~~~l~~~~~--~~l~-~lp~L~~L~L~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~ 844 (920)
.++.|.++.|.+..... .... --|.++.|++..|... ....-....||++..+.+..|+. +...- ....+|.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc-cchhhcccCCCCCc
Confidence 88888888874322110 0001 1124444444433211 00011124588888888887763 33322 3346777
Q ss_pred ccEEEEecCCCCCcc--CcccCCCCCCCEEEEecChHHHHHhccccccc-ceeeccceEEEeccc
Q 047503 845 LRELKIGPCPLLKEI--PAGIEHLRNLEILKFCGMLTVIASMIDDANWQ-KIIELVPCVFVSFKR 906 (920)
Q Consensus 845 L~~L~l~~c~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~ip~i~~~~~~ 906 (920)
+-.|++..+. +.+. .+.+...+.|..|.+.+.| +.+.++.++.. --|+.+|++.+-|++
T Consensus 226 ~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P--l~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 226 LSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP--LSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhhhhcccc-cccHHHHHHHcCCchhheeeccCCc--ccccccCCcceEEEEeeccceEEecCc
Confidence 7788887665 3322 2356677888888888888 44556655443 567888888776433
No 136
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.8e-05 Score=93.12 Aligned_cols=84 Identities=24% Similarity=0.335 Sum_probs=43.5
Q ss_pred hhhccCCeeeEEEccCCCCC--cCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccc--hhhcccc
Q 047503 572 KLVAEFKLMKVLDFEDAPIE--FLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLP--VEIKNLK 647 (920)
Q Consensus 572 ~~~~~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~l~ 647 (920)
.+-..+|.||.|.+++-.+. ++..-..++++|+.||+|+|+++.+ ..+++|+|||+|.+++-.++.-+ ..+.+|+
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 33344555555555554432 2222233455555666666555555 45566666666666554444322 2355566
Q ss_pred cCCeEeecc
Q 047503 648 KLRYLLVYH 656 (920)
Q Consensus 648 ~L~~L~l~~ 656 (920)
+|++|+++.
T Consensus 221 ~L~vLDIS~ 229 (699)
T KOG3665|consen 221 KLRVLDISR 229 (699)
T ss_pred CCCeeeccc
Confidence 666666665
No 137
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=3.7e-06 Score=94.80 Aligned_cols=244 Identities=22% Similarity=0.214 Sum_probs=151.3
Q ss_pred cCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCccc
Q 047503 598 GNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTD 677 (920)
Q Consensus 598 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~ 677 (920)
..+..++.++++.+.+..+-..++.+.+|+.|++.+|.+..+...+..+++|++|++++|.... ..++..++.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-------i~~l~~l~~ 141 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-------LEGLSTLTL 141 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-------ccchhhccc
Confidence 3566777788888888886666889999999999999999988768999999999999974322 235667778
Q ss_pred CccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHH-hccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEE
Q 047503 678 LQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCAS-IADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYL 756 (920)
Q Consensus 678 L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L 756 (920)
|+.|++.++....+..+..++.|+.+++..+.... +... +..+.+|+.+.+.+|...... .+.... .+..+.+
T Consensus 142 L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i~~i~---~~~~~~-~l~~~~l 215 (414)
T KOG0531|consen 142 LKELNLSGNLISDISGLESLKSLKLLDLSYNRIVD--IENDELSELISLEELDLGGNSIREIE---GLDLLK-KLVLLSL 215 (414)
T ss_pred hhhheeccCcchhccCCccchhhhcccCCcchhhh--hhhhhhhhccchHHHhccCCchhccc---chHHHH-HHHHhhc
Confidence 99999999987777778788888888888543222 1111 466778888888887654321 111111 2222233
Q ss_pred eccCCCCCccccCCC--CcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCce
Q 047503 757 VGSMKNLPDWIFKLK--NLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTL 834 (920)
Q Consensus 757 ~~~~~~lp~~~~~l~--~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 834 (920)
..+.-.--..+..+. .|+.++++++.+.... ..+..++.+..|++.++.+...- ....++.+..+....+.....
T Consensus 216 ~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 216 LDNKISKLEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred ccccceeccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcch
Confidence 322100000111222 2777888887764321 44566777777777766544221 112344444444444332211
Q ss_pred e---eE-cCCCCccccEEEEecCCCCC
Q 047503 835 M---MI-DKGAMPCLRELKIGPCPLLK 857 (920)
Q Consensus 835 ~---~~-~~~~~~~L~~L~l~~c~~l~ 857 (920)
+ .. .....+.+..+.+.+++.-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhccccccccccccccccccCcccc
Confidence 1 11 14566777777777776433
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.0025 Score=73.03 Aligned_cols=156 Identities=12% Similarity=0.168 Sum_probs=90.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHF--DCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
...+.|+|..|+|||.|++.+++. ....+ ..+++++. .+++.++...+... . ..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------------~----~~ 369 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------------K----GD 369 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------------c----HH
Confidence 345899999999999999999985 33222 23556543 44455554443221 0 12
Q ss_pred HHHHHhcCCcEEEEEEcCCCc---hhhhH-HHHhccC-CCCCcEEEEEccch--hhh---h-hcccCCccceeecCCCCH
Q 047503 272 AVRQYLHDKNYMIVLDDVWKI---ELWGD-VEHALLD-NKKGSRIMLTTRHK--AVA---D-FCKQSSFVQVHELEALPA 340 (920)
Q Consensus 272 ~l~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~--~v~---~-~~~~~~~~~~~~l~~L~~ 340 (920)
.+++.+.+ -=+|||||+... +.|+. +...+.. ...|..|||||... +.. . ........-.++|.+.+.
T Consensus 370 ~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 370 SFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred HHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 23333332 357889999754 23332 2222221 12356688888763 111 1 111112236789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 341 VEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 341 ~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
+.-.+++.+++.... .. --.+++.-|++++.+..
T Consensus 449 EtR~aIL~kka~~r~--l~---l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 449 ETRIAILRKKAVQEQ--LN---APPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHHHHHhcC--CC---CCHHHHHHHHHhccCCH
Confidence 999999999875432 11 12467777777776653
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=0.00018 Score=78.78 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=78.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.++++.++..+.++..|... +.+.++|++|+|||++|+.+++.......|+.+.||+++..++..+++...-.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP--- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP--- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC---
Confidence 45788999999999999864 37788999999999999999886444567888999999998887666542210
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch---hhhHHHHhcc
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE---LWGDVEHALL 303 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~---~~~~l~~~l~ 303 (920)
. +. . ......-..+.+...-. ++++++|+|++...+ .+..+...+-
T Consensus 248 -~-~v----g-y~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 248 -N-GV----G-FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred -C-CC----C-eEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0 00 0 00000111222222222 468999999997653 3555544443
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.68 E-value=0.00038 Score=84.63 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccCC-CCceEE-EEeCCCCCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---VMNH-FDCRAW-ITVGRECMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~w-v~v~~~~~~~~~~~~i 245 (920)
+.++||+.++.++++.|..... .-+.++|.+|+||||+|+.+++.-. +... .+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-----------
Confidence 4789999999999999987652 3445999999999999999887411 1111 123333 32221
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCch-------hhh--HHHHhccCCCCCcEEEEEc
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKIE-------LWG--DVEHALLDNKKGSRIMLTT 315 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~-------~~~--~l~~~l~~~~~gs~iivTt 315 (920)
+... .. ....-...+...+.+.- .+++.+|++|++.... .-+ .+..+....+ .-++|-||
T Consensus 254 ---l~ag--~~----~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaT 323 (852)
T TIGR03345 254 ---LQAG--AS----VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAAT 323 (852)
T ss_pred ---hhcc--cc----cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEec
Confidence 0000 00 00000112222222221 2468999999986541 111 1222222222 24566666
Q ss_pred cchhhhh------hcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 316 RHKAVAD------FCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 316 R~~~v~~------~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
...+... .... ....+.+++++.++...++....
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCeEEEeCCCCHHHHHHHHHHHH
Confidence 6543321 1111 12689999999999999975543
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0023 Score=72.81 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=105.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc--c-----------------CCCCceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV--M-----------------NHFDCRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~-----------------~~F~~~~wv~ 231 (920)
.+++|-+..+..+..++..+. -.+.+.++|..|+||||+|+.++....- . +.|...+++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 478899999999999998754 2466788999999999999988663110 0 0011112221
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccC
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLD 304 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~ 304 (920)
.+.. ...++. +.+.+.+ .+++-++|+|+++.. +..+.+...+..
T Consensus 95 aas~----------------------------~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe 145 (486)
T PRK14953 95 AASN----------------------------RGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE 145 (486)
T ss_pred CccC----------------------------CCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc
Confidence 1111 111111 1122221 356679999999765 356667666665
Q ss_pred CCCCcEEEEEc-cchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHH
Q 047503 305 NKKGSRIMLTT-RHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIV 383 (920)
Q Consensus 305 ~~~gs~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~ 383 (920)
......+|++| +...+........ ..+.+.+++.++....+.+.+-...- .--.+.+..|++.++|.+-.+.
T Consensus 146 pp~~~v~Il~tt~~~kl~~tI~SRc--~~i~f~~ls~~el~~~L~~i~k~egi-----~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 146 PPPRTIFILCTTEYDKIPPTILSRC--QRFIFSKPTKEQIKEYLKRICNEEKI-----EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCCCeEEEEEECCHHHHHHHHHHhc--eEEEcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 55455555544 4333332222111 67899999999988888876543211 1123556778888988765443
Q ss_pred HH
Q 047503 384 AV 385 (920)
Q Consensus 384 ~~ 385 (920)
..
T Consensus 219 ~~ 220 (486)
T PRK14953 219 SL 220 (486)
T ss_pred HH
Confidence 33
No 142
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0021 Score=73.13 Aligned_cols=179 Identities=15% Similarity=0.081 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc--ccCC----------------CC-ceEEEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY--VMNH----------------FD-CRAWIT 231 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~~~----------------F~-~~~wv~ 231 (920)
++++|-+..++.+..++..+. -.+++.++|..|+||||+|+.+.+..- .... +. .++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 478999999999999997764 346778999999999999997765310 0000 00 011221
Q ss_pred eCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHHhccCC
Q 047503 232 VGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEHALLDN 305 (920)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~ 305 (920)
.+.. ...+++...+... ..+++-++|+|+++.. +....++..+-..
T Consensus 93 aas~----------------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp 144 (535)
T PRK08451 93 AASN----------------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (535)
T ss_pred cccc----------------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence 1111 1122222222110 1145568999999765 4566676666655
Q ss_pred CCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 306 KKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 306 ~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
...+++|++|.+. .+....... ...+++.+++.++....+.+.+..... .--.+.+..|++.++|.+--+..
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SR--c~~~~F~~Ls~~ei~~~L~~Il~~EGi-----~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSR--TQHFRFKQIPQNSIISHLKTILEKEGV-----SYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CCceEEEEEECChhhCchHHHhh--ceeEEcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCcHHHHHH
Confidence 5567777666553 222212111 278999999999998888776543221 11246678899999998854443
Q ss_pred H
Q 047503 385 V 385 (920)
Q Consensus 385 ~ 385 (920)
+
T Consensus 218 l 218 (535)
T PRK08451 218 L 218 (535)
T ss_pred H
Confidence 3
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.002 Score=72.77 Aligned_cols=184 Identities=15% Similarity=0.094 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc---------------------CCCCceEE
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM---------------------NHFDCRAW 229 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~w 229 (920)
++++|.+..++.+..++..+. -.+.+.++|..|+||||+|+.+.+...-. .+++ .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 478999999999999997754 23678899999999999999886631100 0111 111
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCC
Q 047503 230 ITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKK 307 (920)
Q Consensus 230 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 307 (920)
+........ +-++++.+.+.. .-..+++-++|+|+++.. +..+.+...+-....
T Consensus 95 i~g~~~~gi-d~ir~i~~~l~~-----------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 95 IDGASHRGI-EDIRQINETVLF-----------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred eeccccCCH-HHHHHHHHHHHh-----------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 111000001 111111111100 001256678999999755 345566666665555
Q ss_pred CcEEEEEcc-chhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHH
Q 047503 308 GSRIMLTTR-HKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAV 385 (920)
Q Consensus 308 gs~iivTtR-~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~ 385 (920)
.+.+|++|. ...+....... ...+++.++++++....+.+.+-.... .--.+.+..|++.++|.+ .|+..+
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sR--c~~v~f~~l~~~el~~~L~~~~~~eg~-----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSR--CQKMHLKRIPEETIIDKLALIAKQEGI-----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CceEEEEeCChHhcchHHHHh--ceEEeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666666653 33332222211 167999999999998888776533210 112456778899999865 444444
Q ss_pred Hh
Q 047503 386 GG 387 (920)
Q Consensus 386 ~~ 387 (920)
-.
T Consensus 224 ek 225 (451)
T PRK06305 224 DY 225 (451)
T ss_pred HH
Confidence 33
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.63 E-value=0.00071 Score=76.37 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC-----CCceEEEEeCC
Q 047503 171 DEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH-----FDCRAWITVGR 234 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~v~~ 234 (920)
.++.|.+..+++|.+.+... -...+-+.++|++|.|||++|+.+++. ...+ +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 46788999999998876421 123566899999999999999999986 2222 22344555432
Q ss_pred CCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCc---------hhh-----hHHH
Q 047503 235 ECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKI---------ELW-----GDVE 299 (920)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~---------~~~-----~~l~ 299 (920)
. +++.....+. ......+....++.. .+++++|+||+++.. .+. ..+.
T Consensus 260 ~----eLl~kyvGet-------------e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 260 P----ELLNKYVGET-------------ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred h----hhcccccchH-------------HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 1 1111100000 000112222333222 347899999999753 111 2233
Q ss_pred HhccCCC--CCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHhc
Q 047503 300 HALLDNK--KGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKAF 352 (920)
Q Consensus 300 ~~l~~~~--~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 352 (920)
..+.... .+..||.||....... .+ .....+..+++++.+.++..++|..+..
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 3333221 3445566665543322 22 2223346789999999999999998863
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.62 E-value=2e-06 Score=95.71 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=24.1
Q ss_pred eecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeeccc
Q 047503 607 SVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 607 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 657 (920)
+.++|.+..+-.++.-++.|+.|||++|+++... .+..|++|+||+|+.|
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc
Confidence 3333333334444444555555555555555443 4455555555555543
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=0.00049 Score=83.09 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=85.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc---cccCCC-CceEEEEeCCCCCHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQ---YVMNHF-DCRAWITVGRECMKKDLLIKMI 246 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~v~~~~~~~~~~~~i~ 246 (920)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.+++.. .+...+ +..+|. + +...++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a--- 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA--- 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh---
Confidence 478999999999999997765 2345699999999999999988742 111112 344442 1 1111110
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCch----------hhhHHHHhccCCCCCcEEEEEc
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKIE----------LWGDVEHALLDNKKGSRIMLTT 315 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTt 315 (920)
.. . ... +.++....+.+.+ +.++.+|++|++...- +-..+..+....+ .-++|-+|
T Consensus 252 -~~--~--------~~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaT 318 (731)
T TIGR02639 252 -GT--K--------YRG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGST 318 (731)
T ss_pred -hc--c--------ccc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEec
Confidence 00 0 000 1122222233333 3467899999997431 1112222222222 23455555
Q ss_pred cchhhh------hhcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 316 RHKAVA------DFCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 316 R~~~v~------~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
...+.. ..... ....+++++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCceEEeCCCCHHHHHHHHHHHH
Confidence 443221 11111 12578999999999999998654
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.53 E-value=0.0017 Score=71.70 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=97.7
Q ss_pred CCccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
-.++.|.+..+++|.+.+.-. -...+-+.++|++|.|||+||+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 356889999998888766421 124577889999999999999999985 32332 22211
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hh----hhHHHHhc
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------EL----WGDVEHAL 302 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l 302 (920)
..+... .... ....+...+.......+.+|++|+++.. .. +..+...+
T Consensus 213 s~l~~k----~~ge------------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 213 SEFVQK----YLGE------------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM 276 (398)
T ss_pred HHHHHH----hcch------------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh
Confidence 111111 1000 1112222233333457899999998642 01 11222222
Q ss_pred cC--CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 303 LD--NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 303 ~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
.. ...+..||+||...+... . .........++++..+.++..++|........- ....+ ...+++.+.|.
T Consensus 277 d~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l--~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 277 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL--SEEVD----LEDFVSRPEKI 350 (398)
T ss_pred hccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC--CcccC----HHHHHHHcCCC
Confidence 21 224567888887654332 2 222233467889988999888888866533211 11112 34556666665
Q ss_pred h
Q 047503 379 P 379 (920)
Q Consensus 379 P 379 (920)
.
T Consensus 351 s 351 (398)
T PTZ00454 351 S 351 (398)
T ss_pred C
Confidence 3
No 148
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.53 E-value=0.0035 Score=65.00 Aligned_cols=195 Identities=15% Similarity=0.075 Sum_probs=115.4
Q ss_pred hhHHHHHHHHhcCC-CCcEEEEEEcCCCCcHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHHhhh
Q 047503 178 SARDILIGWLVNGR-KQRSVVALVGQGGIGKTTLAGKLFNNQYVM----NHFDCRAWITVGRECMKKDLLIKMIKEFHQL 252 (920)
Q Consensus 178 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (920)
+..+++.+.+..+. ....-+.|||.+|.|||++++++....-.. ..--.|+.|.....++...+...|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34455555555443 345789999999999999999987541111 1111477888888999999999999999876
Q ss_pred ccCCccccCCcCCHHHHHHHHHHHhcC-CcEEEEEEcCCCc-----hhhhHHHH---hccCCCCCcEEEEEccchhhhhh
Q 047503 253 TGQSALGEMNNMEEKDLIIAVRQYLHD-KNYMIVLDDVWKI-----ELWGDVEH---ALLDNKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~l~~---~l~~~~~gs~iivTtR~~~v~~~ 323 (920)
... ..+...+...+...++. +-=+||+|.+.+. ..-..+.. .+.+.-.-+-|.+-|+.-.-+-.
T Consensus 124 ~~~-------~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~ 196 (302)
T PF05621_consen 124 YRP-------RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALR 196 (302)
T ss_pred cCC-------CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhc
Confidence 322 22334555556666665 4468999999764 22223333 33333344566676665443321
Q ss_pred cccC--CccceeecCCCCHHHH-HHHHHHHh--cCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 324 CKQS--SFVQVHELEALPAVEA-WRLFCRKA--FASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 324 ~~~~--~~~~~~~l~~L~~~~~-~~Lf~~~~--~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
.+.. ....++.++.-..++- ..|+.... ..-.. ..+-...++++.|...++|+.=-
T Consensus 197 ~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~--~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 197 TDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK--PSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred cCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC--CCCCCCHHHHHHHHHHcCCchHH
Confidence 1110 1114566666555444 34443321 12221 22234468899999999998643
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0038 Score=72.92 Aligned_cols=199 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+...-....+ ...+.....-+.|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~--- 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITE--- 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhc---
Confidence 478999999999999987764 246778999999999999998876411000000 000000000000000
Q ss_pred hhccCCcc--ccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEE-Eccchhh
Q 047503 251 QLTGQSAL--GEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIML-TTRHKAV 320 (920)
Q Consensus 251 ~~~~~~~~--~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v 320 (920)
....+.. ....+...++. +.+.+.+ .+++-++|+|+++.. .....+...+-.....+.+|+ ||....+
T Consensus 85 -g~~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 85 -GRSVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred -CCCCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 0000000 00000111121 1122221 245568999999765 356667666665555666655 4444444
Q ss_pred hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HHHHHHHhhh
Q 047503 321 ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LAIVAVGGLL 389 (920)
Q Consensus 321 ~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-lai~~~~~~l 389 (920)
........ ..+++.+++.++....+...+..... .--.+....|++.++|.. .|+..+-.++
T Consensus 163 ~~tI~SRc--~~~~f~~l~~~~i~~~L~~i~~~egi-----~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 163 PITILSRC--QRFDFRRIPLQKIVDRLRYIADQEGI-----SISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred hHHHHHhh--hhhhcCCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43222211 67889999999988777765432211 112356677888998865 4555554443
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0041 Score=72.82 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.+++|.+..+..|..++..+. -.+.+.++|..|+||||+|+.+++.-. ....+... ...+...+.-+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 478899999999999998764 235678999999999999999877521 11110000 011111111111111111
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccc-hhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRH-KAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 323 (920)
....+- ........+++.+.+... ..+++-++|+|+++.. +.+..+...+-.....+.+|++|.+ ..+...
T Consensus 90 ~D~~ei--~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEI--DAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEE--eccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 000000 000111222222222111 1245568999999865 4577777777655555655555543 333222
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
+... ...+++.+++.++....+.+.+..... .. -.+.+..|++.++|.+..+..+
T Consensus 168 IrSR--c~~~~f~~l~~~ei~~~L~~ia~kegi--~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISR--CQRFDFRRIPLEAMVQHLSEIAEKESI--EI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhh--eeEEEecCCCHHHHHHHHHHHHHHhCC--CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2211 167888899999888777765543211 11 1245778899999987544433
No 151
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.011 Score=64.44 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=93.7
Q ss_pred CccccchhhHH--HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 047503 171 DEVVGIESARD--ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 171 ~~~~Gr~~~~~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
.-++|-....- ....+-...+.....+.|+|..|.|||.|++.+.+. ...+......+.+ +....+.+++..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a 161 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKA 161 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHH
Confidence 34556544332 233333333334778999999999999999999995 4444443333333 344555555555
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hhh-HHHHhccC-CCCCcEEEEEccchh----
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LWG-DVEHALLD-NKKGSRIMLTTRHKA---- 319 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~~~---- 319 (920)
+... -...+++.. .-=++++||++... .|+ .+...|.. ...|..||+|++...
T Consensus 162 ~~~~----------------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 162 LRDN----------------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHhh----------------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5332 134455555 34488899997642 333 23333332 123448999986542
Q ss_pred -----hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCC
Q 047503 320 -----VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFAS 354 (920)
Q Consensus 320 -----v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 354 (920)
+...... .-.+++.+.+.+....++.+++...
T Consensus 224 ~~~~rL~SR~~~---Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 224 GLEDRLRSRLEW---GLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred cccHHHHHHHhc---eeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 2222322 2789999999999999999976544
No 152
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.49 E-value=0.0031 Score=71.16 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=99.7
Q ss_pred ccccchhhH--HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC-CC-ceEEEEeCCCCCHHHHHHHHHH
Q 047503 172 EVVGIESAR--DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH-FD-CRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 172 ~~~Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
-++|-.... ....++..+.+ ...-+.|+|..|+|||+||+.+++. +... .+ .++|++. .+++.++..
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~ 177 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVD 177 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHH
Confidence 345744332 23334433322 2345899999999999999999985 3332 22 4566653 455566655
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc---hhh-hHHHHhccC-CCCCcEEEEEcc-chhhh
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI---ELW-GDVEHALLD-NKKGSRIMLTTR-HKAVA 321 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v~ 321 (920)
.+... +.+ .+++.+..+.-+|++||+... ..+ +.+...+.. ...|..||+||. ...-.
T Consensus 178 ~~~~~------------~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 178 SMKEG------------KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred HHhcc------------cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 54321 112 233333345568999999753 112 233333221 122456888874 33211
Q ss_pred ----hhccc-CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 322 ----DFCKQ-SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 322 ----~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
....+ -.....+.+++.+.++-.+++.+.+.... ... -.++...|++.+.|.-
T Consensus 242 ~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~--~~l---~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH--GEL---PEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC--CCC---CHHHHHHHHhccccCH
Confidence 11111 11125788999999999999998875321 111 2466778888887754
No 153
>PRK06620 hypothetical protein; Validated
Probab=97.49 E-value=0.0026 Score=64.21 Aligned_cols=157 Identities=17% Similarity=0.097 Sum_probs=86.9
Q ss_pred CCccccch--hhHHHHHHHHhcCCCCc--EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 047503 170 DDEVVGIE--SARDILIGWLVNGRKQR--SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 170 ~~~~~Gr~--~~~~~l~~~L~~~~~~~--~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (920)
++-++|-. .....+.+|-...+.+. ..+.|+|+.|+|||+|++.+++... . .++. ..+.
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~-------- 78 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF-------- 78 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------
Confidence 44556652 23444455443211112 5689999999999999999877521 1 1211 0000
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccC-CCCCcEEEEEccchhh----
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLD-NKKGSRIMLTTRHKAV---- 320 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v---- 320 (920)
. + +.. +..-++++||+...++ ..+...+.. ...|..||+|++...-
T Consensus 79 ------~--------------~-------~~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l 129 (214)
T PRK06620 79 ------N--------------E-------EIL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTL 129 (214)
T ss_pred ------c--------------h-------hHH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccch
Confidence 0 0 011 1235788999974321 112222111 1346789998874422
Q ss_pred ---hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 321 ---ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 321 ---~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
...+.. ..++++++++.++...++.+.+.... -.--+++..-|++++.|.--
T Consensus 130 ~~L~SRl~~---gl~~~l~~pd~~~~~~~l~k~~~~~~-----l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 130 PDLSSRIKS---VLSILLNSPDDELIKILIFKHFSISS-----VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred HHHHHHHhC---CceEeeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHccCCHH
Confidence 122222 25899999999998888887764321 11224677778888877643
No 154
>CHL00176 ftsH cell division protein; Validated
Probab=97.49 E-value=0.0019 Score=75.57 Aligned_cols=175 Identities=15% Similarity=0.184 Sum_probs=98.2
Q ss_pred CccccchhhHHHHHHH---HhcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGW---LVNGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~---L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
+++.|.++.++++.+. +.... ...+-|.++|++|.|||+||+.+++.. . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 4688887766665444 33321 124568999999999999999998852 1 223333211 1
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hhhhHHHHh----ccC
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------ELWGDVEHA----LLD 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~~~~l~~~----l~~ 304 (920)
+. ..... .....+...+.......+++|++||++.. +.+...... +..
T Consensus 252 f~----~~~~g------------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 252 FV----EMFVG------------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred HH----HHhhh------------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 11 00000 01122333444455667899999999643 122222222 221
Q ss_pred --CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 305 --NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 305 --~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
...+-.||.||...+... . ......+..+.++..+.++-.++++.++.... .........+++.+.|.
T Consensus 316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~------~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK------LSPDVSLELIARRTPGF 387 (638)
T ss_pred ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc------cchhHHHHHHHhcCCCC
Confidence 234556777776654322 1 22223346788988999999999988764321 11123456677777773
No 155
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0019 Score=71.69 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=84.3
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCc
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSA 257 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 257 (920)
.-..++++.+.... .++.|.|+-++||||+++.+... .... .+++..-+......-+.+..
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------
Confidence 44445555544433 29999999999999999776654 2222 45554322111111011111
Q ss_pred cccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhccc---CCccceee
Q 047503 258 LGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQ---SSFVQVHE 334 (920)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~---~~~~~~~~ 334 (920)
..+.+.-..++..|+||.|.....|......+.+.++. +|++|+-+......... .+....++
T Consensus 85 -------------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~ 150 (398)
T COG1373 85 -------------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLE 150 (398)
T ss_pred -------------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEE
Confidence 11111111277899999999999999999999987766 89888887654321110 12236789
Q ss_pred cCCCCHHHHHHHH
Q 047503 335 LEALPAVEAWRLF 347 (920)
Q Consensus 335 l~~L~~~~~~~Lf 347 (920)
+-||+..|...+.
T Consensus 151 l~PlSF~Efl~~~ 163 (398)
T COG1373 151 LYPLSFREFLKLK 163 (398)
T ss_pred ECCCCHHHHHhhc
Confidence 9999999987643
No 156
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00046 Score=74.79 Aligned_cols=72 Identities=28% Similarity=0.342 Sum_probs=49.3
Q ss_pred hccCCeeeEEEccCCCCCcCcccccCcccCceeeecCC-CccccCccccCCCCCcEEeecCC-cccccchhhcccccCCe
Q 047503 574 VAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNT-KVKVLPKSIGRLLNLQTLDLKHS-LVTQLPVEIKNLKKLRY 651 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~ 651 (920)
+..+++++.|++++|.+..+|. -..+|+.|.+++| .+..+|..+ ..+|+.|++++| .+..+|.. |++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 3456888888888888887772 2345888888774 466777655 357888888877 67677653 555
Q ss_pred Eeecc
Q 047503 652 LLVYH 656 (920)
Q Consensus 652 L~l~~ 656 (920)
|.+..
T Consensus 117 L~L~~ 121 (426)
T PRK15386 117 LEIKG 121 (426)
T ss_pred EEeCC
Confidence 65554
No 157
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0054 Score=70.97 Aligned_cols=196 Identities=11% Similarity=0.070 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.+++|-+..++.+..++..+. -.+.+.++|..|+||||+|+.+++...-...... ..+....+- +.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCCC
Confidence 478999999999999998754 3567889999999999999998774111110000 000000000 00000000
Q ss_pred hhccCCccccCCcCCHHHHHHHH---HH-HhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccc-hhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAV---RQ-YLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRH-KAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l---~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 323 (920)
..... . ....+...+++.... .. -..+++-++|+|++... ..++.+...+-.....+.+|++|.. ..+...
T Consensus 88 ~dv~~-i-dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIE-I-DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEE-e-cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 00000 0 000011122222211 11 11356668999999765 4567777776665556666665543 333322
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHH
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIV 383 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~ 383 (920)
.... ...+++.+++.++....+.+.+..... +--.+.+..|++.++|.+-.+.
T Consensus 166 I~SR--c~~~~f~~l~~~el~~~L~~i~~~egi-----~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 166 IKSR--CQHFNFRLLSLEKIYNMLKKVCLEDQI-----KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHh--ceEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2221 167899999999998888876643221 1224667778889999775433
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.44 E-value=0.00056 Score=83.67 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=85.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccCCC-CceEEEEeCCCCCHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---VMNHF-DCRAWITVGRECMKKDLLIKMI 246 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~~~~~i~ 246 (920)
+.++||++++++++++|..... .-+.++|.+|+|||++|+.++..-. +.... +..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a--- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA--- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc---
Confidence 4689999999999999987652 2446999999999999999877411 11111 345553 2 2211110
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---------hhhHHHHhccCCCCCcEEEEEccc
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---------LWGDVEHALLDNKKGSRIMLTTRH 317 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~ 317 (920)
+. . ......+.+...+.+.-..++.+|++|++...- +-..+..+....+ .-++|.+|..
T Consensus 249 ----g~---~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~ 316 (821)
T CHL00095 249 ----GT---K----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTL 316 (821)
T ss_pred ----cC---C----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCH
Confidence 00 0 000011222222322223567999999996321 1122332222222 2455555555
Q ss_pred hhhhhhccc----CCccceeecCCCCHHHHHHHHHHH
Q 047503 318 KAVADFCKQ----SSFVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 318 ~~v~~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
.+....... .....++.+...+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 543221110 011256788888999988887653
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0072 Score=65.12 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=62.8
Q ss_pred CCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 047503 279 DKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASV 355 (920)
Q Consensus 279 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 355 (920)
+++-++|+|+++.. +....+...+-....++.+|+||.+.+ +...+.+- ...+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~L~~~~~~~- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR--CQQQACPLPSNEESLQWLQQALPES- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh--ceeeeCCCcCHHHHHHHHHHhcccC-
Confidence 34455678999875 456677776666556777777777653 32222211 1679999999999998887653111
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 356 SDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 356 ~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
..+.+..++..++|.|..+..+
T Consensus 182 --------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --------ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234556788999999865544
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=8.7e-05 Score=87.41 Aligned_cols=127 Identities=21% Similarity=0.193 Sum_probs=93.9
Q ss_pred CCeeEEEEecCcc---cccc--ccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCce
Q 047503 531 TKTRRISINQSLN---NVLE--WTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHY 605 (920)
Q Consensus 531 ~~~r~lsl~~~~~---~~~~--~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~ 605 (920)
.+++||.+.+... .++. ..-+|.|++|.+.+......+ +...+.+|++|+.||+++++++.+ ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3567777766433 2222 345899999999886654333 346679999999999999999987 67999999999
Q ss_pred eeecCCCccccC--ccccCCCCCcEEeecCCcccccchh-------hcccccCCeEeecccCC
Q 047503 606 LSVRNTKVKVLP--KSIGRLLNLQTLDLKHSLVTQLPVE-------IKNLKKLRYLLVYHSDN 659 (920)
Q Consensus 606 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~~-------i~~l~~L~~L~l~~~~~ 659 (920)
|.+++-.+..-+ ..+.+|++|+.||+|..+...-+.. -..||+||.|+.++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999986666432 4577999999999998754433321 13489999999998643
No 161
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0084 Score=67.50 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=86.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..-+.|+|..|+|||+|++.+++. +......+++++ ...+...+...+... . ...+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~------------~----~~~f 196 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG------------E----MQRF 196 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc------------h----HHHH
Confidence 356789999999999999999985 322223455554 234444444444211 0 1223
Q ss_pred HHHhcCCcEEEEEEcCCCchh--h--hHHHHhccC-CCCCcEEEEEccch-h----hhhhcc-cCCccceeecCCCCHHH
Q 047503 274 RQYLHDKNYMIVLDDVWKIEL--W--GDVEHALLD-NKKGSRIMLTTRHK-A----VADFCK-QSSFVQVHELEALPAVE 342 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~iivTtR~~-~----v~~~~~-~~~~~~~~~l~~L~~~~ 342 (920)
++.++ ..-+|++||+..... | +.+...+.. ...|..||+||... . +...+. .-.....+.+.+++.++
T Consensus 197 ~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 197 RQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred HHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 44333 345888999965422 1 222222221 11355688887542 1 111111 11112688999999999
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 343 AWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 343 ~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
...++.+++-... ... -.++..-|+..+.|.
T Consensus 276 r~~iL~~k~~~~~--~~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 276 LRSFLERKAEALS--IRI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHHHcC--CCC---CHHHHHHHHHhcCCC
Confidence 9999998875432 111 235556666666644
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.35 E-value=0.0017 Score=79.77 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=84.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC------CCceEEEEeCCCCCHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH------FDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~v~~~~~~~~~~~~ 244 (920)
+.++||+.++.++++.|..... .-+.++|.+|+|||++|+.+... +... ....+|.- +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l--- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL--- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH---
Confidence 4689999999999999987653 34458999999999999998774 2111 12333321 11111
Q ss_pred HHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-CCcEEEEEEcCCCch---------hhhHHHHhccCCCCCcEEEEE
Q 047503 245 MIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-DKNYMIVLDDVWKIE---------LWGDVEHALLDNKKGSRIMLT 314 (920)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivT 314 (920)
+.. .. ....-...+...+.+.-+ +++.+|++|++.... +-..+..+....+ .-++|.+
T Consensus 241 -~a~--~~--------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~Iga 308 (852)
T TIGR03346 241 -IAG--AK--------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGA 308 (852)
T ss_pred -hhc--ch--------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEe
Confidence 100 00 000001122222222222 468999999997431 1112222222222 2345555
Q ss_pred ccchhhhhhccc----CCccceeecCCCCHHHHHHHHHHHh
Q 047503 315 TRHKAVADFCKQ----SSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 315 tR~~~v~~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
|...+....... .....++.+...+.++...++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 554443211100 0112568889899999999887654
No 163
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.01 Score=60.03 Aligned_cols=173 Identities=23% Similarity=0.266 Sum_probs=101.2
Q ss_pred CccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
.+|+|-++-++++.=++... .+.+--|.++|++|.||||||.-+++. ....+ -++-+.....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~leK--------- 90 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALEK--------- 90 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----EecccccccC---------
Confidence 57999999999887766542 345788999999999999999999985 32222 1111111111
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---------hhhHHHHhc-cCCCCCcEE------
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---------LWGDVEHAL-LDNKKGSRI------ 311 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---------~~~~l~~~l-~~~~~gs~i------ 311 (920)
..++...+.. | .+.=++.+|.+.... ..+++.... -..++++|.
T Consensus 91 ------------------~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ------------------PGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ------------------hhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1222222222 1 233455667775431 111111111 122333333
Q ss_pred -----EEEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 312 -----MLTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 312 -----ivTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
=-|||...+..=... .+.-+..++.-+.+|-.++..+.+..-.- .-.++-+.+|+++..|-|--+.-
T Consensus 151 pFTLIGATTr~G~lt~PLrd-RFGi~~rlefY~~~eL~~Iv~r~a~~l~i-----~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD-RFGIIQRLEFYTVEELEEIVKRSAKILGI-----EIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred CeeEeeeccccccccchhHH-hcCCeeeeecCCHHHHHHHHHHHHHHhCC-----CCChHHHHHHHHhccCCcHHHHH
Confidence 348887765542222 22356788899999999999988743321 12346788999999999964433
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.34 E-value=0.0016 Score=72.58 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
.++.|.++.+++|.+.+.-. -...+-+.++|.+|.|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 46789999999988877421 123456889999999999999999985 33333 222111
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch------------h-hhHHHH---hcc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE------------L-WGDVEH---ALL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------~-~~~l~~---~l~ 303 (920)
++. ....+. ....+...+.....+.+.+|+||+++... . ...+.. .+.
T Consensus 252 eL~----~k~~Ge------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 252 ELI----QKYLGD------------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred hhh----hhhcch------------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 111 111000 01112222222334577899999985320 0 111222 221
Q ss_pred C--CCCCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 304 D--NKKGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
. ...+.+||+||...+... .. ........+++.+.+.++..++|..+...
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 233567888887654432 22 22233467899999999999999987643
No 165
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.34 E-value=0.01 Score=72.28 Aligned_cols=48 Identities=23% Similarity=0.545 Sum_probs=38.8
Q ss_pred CCccccchhhHHHHHHHHhcC----CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 170 DDEVVGIESARDILIGWLVNG----RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.+++|.++-+++|.+++... ..+..++.++|++|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999877532 223458999999999999999999885
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.33 E-value=0.0048 Score=71.26 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=96.3
Q ss_pred CCccccchhhHHHHHHHHh---cC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 170 DDEVVGIESARDILIGWLV---NG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
-++++|.++.++++.+++. .. ....+-+.++|++|+|||+||+.+++.. ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3578898887776655443 21 1224568899999999999999998752 222 233321 1
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hhhhHHHHh----cc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------ELWGDVEHA----LL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~~~~l~~~----l~ 303 (920)
++. ..... .....+...+.......+.+|++||++.. +.+...... +.
T Consensus 123 ~~~----~~~~g------------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 123 DFV----EMFVG------------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186 (495)
T ss_pred HHH----HHHhc------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc
Confidence 111 11100 01123333444444456799999999653 112222222 21
Q ss_pred --CCCCCcEEEEEccchhh-hhhc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 304 --DNKKGSRIMLTTRHKAV-ADFC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 304 --~~~~gs~iivTtR~~~v-~~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
....+-.||.||..... -... .....+..+.++..+.++-.++|..+...... .. ......+++.+.|.
T Consensus 187 ~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~----~~~l~~la~~t~G~ 259 (495)
T TIGR01241 187 GFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--AP----DVDLKAVARRTPGF 259 (495)
T ss_pred cccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--Cc----chhHHHHHHhCCCC
Confidence 12234456666765432 2222 22234467889999998889999887643211 11 12234777888775
No 167
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=2.5e-05 Score=90.74 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=82.1
Q ss_pred CCCCcEEEEE-ecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcce
Q 047503 697 LRQLRKLGIQ-LTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVR 775 (920)
Q Consensus 697 l~~L~~L~l~-~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~ 775 (920)
+++|+.|.+. +.......+......+++|++|+|++|.......+..+...+++++.|.+.+.. .++.++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~--------~c~~l~~ 339 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN--------GCPSLTD 339 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC--------CCccHHH
Confidence 5667777644 333455556666667777888888777554222122222222255555443321 1455666
Q ss_pred EEEEeeccCC---CcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCC-ceeeEcCCCCccccEEEEe
Q 047503 776 IGLYWSELTN---DPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGV-TLMMIDKGAMPCLRELKIG 851 (920)
Q Consensus 776 L~L~~~~l~~---~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~ 851 (920)
+.+..+.... ...-.+..+|+|+.+.|..+....... .+.+.+|+.+ ..+......+..|+.|+++
T Consensus 340 ~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 340 LSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL----------ELSLRGCPNLTESLELRLCRSDSLRVLNLS 409 (482)
T ss_pred HHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch----------HHHhcCCcccchHHHHHhccCCccceEecc
Confidence 6655543211 122234567777777776554222110 2333333333 1111112223337788888
Q ss_pred cCCCCCccC-cccCC-CCCCCEEEEecChHHH
Q 047503 852 PCPLLKEIP-AGIEH-LRNLEILKFCGMLTVI 881 (920)
Q Consensus 852 ~c~~l~~lp-~~l~~-l~~L~~L~l~~~~~~~ 881 (920)
.|.....-- ..... +.++..+++.+|+...
T Consensus 410 ~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 410 DCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cCccccccchHHHhhhhhccccCCccCccccc
Confidence 777544210 11111 6677777888877433
No 168
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0028 Score=64.31 Aligned_cols=137 Identities=8% Similarity=0.157 Sum_probs=76.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe----CCC--C---CHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV----GRE--C---MKKDL 241 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----~~~--~---~~~~~ 241 (920)
..+.++......++.++.+. .++.+.|.+|.|||+||..+..+.-..+.|+.++-+.- ++. | +..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 34667888888888888663 39999999999999999998775322344543333211 110 1 12111
Q ss_pred HHHHHHHHhhhccCCccccCCcCCHHHHHHHH-----------HHHhcCCcE---EEEEEcCCCchhhhHHHHhccCCCC
Q 047503 242 LIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV-----------RQYLHDKNY---MIVLDDVWKIELWGDVEHALLDNKK 307 (920)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l-----------~~~L~~kr~---LlVlDdv~~~~~~~~l~~~l~~~~~ 307 (920)
+.-.+.-+......- ...+.+...+ -.+++|+.+ +||+|.+.+.+. ..+...+-..+.
T Consensus 131 ~~p~~~pi~D~L~~~-------~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~ 202 (262)
T PRK10536 131 FAPYFRPVYDVLVRR-------LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHH-------hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCC
Confidence 111111111110000 0001111111 136677654 999999988764 444455555668
Q ss_pred CcEEEEEccchh
Q 047503 308 GSRIMLTTRHKA 319 (920)
Q Consensus 308 gs~iivTtR~~~ 319 (920)
+|++|+|--...
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 999999876543
No 169
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.29 E-value=0.0012 Score=71.72 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=16.2
Q ss_pred cccceeeeccCCCCceeeEcCCCCccccEEEEecC
Q 047503 819 PRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPC 853 (920)
Q Consensus 819 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 853 (920)
++|++|.+.+|.... ++. +-.++|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP~--~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE--KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Ccc--cccccCcEEEeccc
Confidence 456666666665332 111 11246666666554
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.28 E-value=0.0015 Score=79.90 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++||+.++.++++.|..... .-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999987652 34558999999999999998774
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.0015 Score=61.31 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVR 274 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (920)
..+.|+|.+|+||||+|+.++.. .......++++..+........... ...... .............+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~ 71 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGG-------KKASGSGELRLRLAL 71 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhc-------cCCCCCHHHHHHHHH
Confidence 57899999999999999999885 2222234566655443322221111 000000 111112233334444
Q ss_pred HHhcCCc-EEEEEEcCCCchh
Q 047503 275 QYLHDKN-YMIVLDDVWKIEL 294 (920)
Q Consensus 275 ~~L~~kr-~LlVlDdv~~~~~ 294 (920)
+.....+ .+|++|+++....
T Consensus 72 ~~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 72 ALARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHHhcCCCEEEEECCcccCC
Confidence 4444444 9999999987643
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0015 Score=77.88 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=87.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccCC-CCceEEEEeCCCCCHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---VMNH-FDCRAWITVGRECMKKDLLIKMI 246 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~wv~v~~~~~~~~~~~~i~ 246 (920)
+.++||++++.++++.|..... .-+.++|.+|+|||++|+.+++... +... .++.+|.. +...+ +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h
Confidence 4689999999999999988542 2345899999999999999886411 1111 24455521 11111 1
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCc----------hhhhHHHHhccCCCCCcEEEEEc
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKI----------ELWGDVEHALLDNKKGSRIMLTT 315 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTt 315 (920)
. +. .. .. +.+.....+.+.+ +..+.+|++|++... .+...+..++...+ .-++|-+|
T Consensus 255 a---G~---~~----~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgAT 322 (758)
T PRK11034 255 A---GT---KY----RG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGST 322 (758)
T ss_pred c---cc---ch----hh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecC
Confidence 0 00 00 00 1122222232333 346789999999643 12222333333322 34555555
Q ss_pred cchhhhhhccc----CCccceeecCCCCHHHHHHHHHHHh
Q 047503 316 RHKAVADFCKQ----SSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 316 R~~~v~~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
...+....... ......+.++..+.++...++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 55443221110 0112578999999999999988654
No 173
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.01 Score=68.90 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=104.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.+..++.+..++..+. -.+.+.++|..|+||||+|+.+.+...-...-+ ...++....-+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 478999999999999998764 246778899999999999998865310000000 011111111111100000
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEc-cchhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTT-RHKAVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~ 322 (920)
....+ . ....+...+++. .+.+.. .++.-++|+|+++.. ..+..+...+-.......+|++| ....+..
T Consensus 88 ~dv~e-i-daas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 88 MDVIE-I-DAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCeEE-e-eccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 00000 0 000011112111 122221 345668899999865 45777777666554455555544 4433332
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
..... ...+++.+++.++....+...+-...- .--.+.+..|++.++|.+..
T Consensus 165 tI~SR--c~~~~f~~~~~~ei~~~L~~i~~~egi-----~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 165 TILSR--CQRFDFKRISVEDIVERLKYILDKEGI-----EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHhH--heEEecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 22211 167889999999988888776643211 11235567788888887653
No 174
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.25 E-value=2.1e-05 Score=69.68 Aligned_cols=76 Identities=20% Similarity=0.381 Sum_probs=36.5
Q ss_pred eEEEccCCCCCcCc---ccccCcccCceeeecCCCccccCcccc-CCCCCcEEeecCCcccccchhhcccccCCeEeecc
Q 047503 581 KVLDFEDAPIEFLP---EEVGNLFHLHYLSVRNTKVKVLPKSIG-RLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYH 656 (920)
Q Consensus 581 r~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 656 (920)
..|||+.|++..++ ..+....+|...+|++|.++.+|+.+. +.+.+++|++.+|.+..+|..+..++.|+.|+++.
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 33444554443222 223334445555555555555554443 23355555555555555555555555555555554
No 175
>PRK08116 hypothetical protein; Validated
Probab=97.23 E-value=0.0019 Score=67.66 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVR 274 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (920)
.-+.++|..|+|||.||..+++. ...+-..++++++ .+++..+....... ...+.. .+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~---------~~~~~~----~~~ 173 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSS---------GKEDEN----EII 173 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcc---------ccccHH----HHH
Confidence 45889999999999999999996 3323344566653 34444444333211 001112 223
Q ss_pred HHhcCCcEEEEEEcCC--CchhhhH--HHHhccC-CCCCcEEEEEccch
Q 047503 275 QYLHDKNYMIVLDDVW--KIELWGD--VEHALLD-NKKGSRIMLTTRHK 318 (920)
Q Consensus 275 ~~L~~kr~LlVlDdv~--~~~~~~~--l~~~l~~-~~~gs~iivTtR~~ 318 (920)
+.+.+-. ||||||+. ...+|.. +...+.. -..|..+|+||...
T Consensus 174 ~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 174 RSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344333 89999994 3345543 2222221 12456688888643
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.22 E-value=0.0015 Score=60.48 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047503 197 VALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (920)
|.|+|..|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999996
No 177
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.22 E-value=0.0018 Score=65.99 Aligned_cols=177 Identities=17% Similarity=0.144 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEE-EEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAW-ITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~~i~~~l 249 (920)
++++|-+..+..+...+... ...+...+|++|.|||+-|+.++..-.-.+-|.+++- .++|..--.. +.++=+..
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik~- 111 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIKN- 111 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhcC-
Confidence 57899999999999998883 3789999999999999999887764222345544433 3333321111 11111110
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHh------cCCc-EEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYL------HDKN-YMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA- 319 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L------~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~- 319 (920)
..++.... .-++ -.||||+.+.. +.|..++..+-+....++.|+.+..-+
T Consensus 112 --------------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 112 --------------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred --------------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 01111111 0133 47889999876 689999988887776777665554432
Q ss_pred hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 320 VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 320 v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
+..-..+ ...-+..++|.+++...-++.-+-..+- .-..+..+.|++.++|-
T Consensus 172 ii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v-----~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 172 IIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGV-----DIDDDALKLIAKISDGD 223 (346)
T ss_pred CChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHcCCc
Confidence 2111111 1156888999999988888776643321 22245677888888885
No 178
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.21 E-value=0.005 Score=74.16 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=88.5
Q ss_pred CCccccchhhHHHHHHHHhcC----CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG----RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (920)
+.+.+|.++-+++|+++|... .....++.++|++|+||||+|+.++.. ....|- -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 467899999999999998741 223468999999999999999999873 333332 23333332322111100
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchh------hhHHHHhccCC--------------
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIEL------WGDVEHALLDN-------------- 305 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~l~~~-------------- 305 (920)
... ..+. ...+...+... ....-+++||.++.... .+.+...+...
T Consensus 396 -----~~~-------~g~~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 396 -----RTY-------IGSM-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred -----hcc-------CCCC-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccc
Confidence 000 0011 12233333322 22445789999965421 22333332211
Q ss_pred -CCCcEEEEEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 306 -KKGSRIMLTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 306 -~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
-...-+|.|+....+....-. ....+.+.+++.++-.++.+++.
T Consensus 462 dls~v~~i~TaN~~~i~~aLl~--R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 462 DLSDVMFVATSNSMNIPAPLLD--RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCceEEEEcCCCCCCCHHHhc--ceeeeecCCCCHHHHHHHHHHhh
Confidence 123445556654433322111 12578899999988888877765
No 179
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0084 Score=64.24 Aligned_cols=197 Identities=13% Similarity=0.155 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-------------cCCCCceEEEEeCCCCC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV-------------MNHFDCRAWITVGRECM 237 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~v~~~~~ 237 (920)
++++|-+..++.+...+..+. -.+...++|..|+||+++|..+.+.--- ...+.-..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468899999999999998764 2478999999999999999877553100 11122234443210000
Q ss_pred HHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-----CCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcE
Q 047503 238 KKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-----DKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSR 310 (920)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 310 (920)
-..+-.+-++..+.. .. .......++. +.+.+.+. +++-++|+|+++.. .....+...+-... .+.
T Consensus 83 g~~~~~~~~~~~~~~--~~---~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 83 GKLITASEAEEAGLK--RK---APPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred ccccchhhhhhcccc--cc---ccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 000000001111100 00 0112222332 33444443 46678999999766 35666766665544 345
Q ss_pred EEEEcc-chhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 311 IMLTTR-HKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 311 iivTtR-~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
+|++|. ...+.....+- ...+.+.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 156 fILi~~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~~~~~--------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLGDEEI--------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhhcccc--------chhHHHHHHHHcCCCHHHHHHH
Confidence 555544 43333322222 27899999999999999988642211 0111357788999999755443
No 180
>PRK08118 topology modulation protein; Reviewed
Probab=97.18 E-value=0.00016 Score=69.85 Aligned_cols=34 Identities=38% Similarity=0.676 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccc-CCCCceEE
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVM-NHFDCRAW 229 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 229 (920)
-|.|+|++|+||||||+++++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999864443 56777776
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.0015 Score=65.99 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
-.++|+|..|+|||||+..+..+ ....|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 46789999999999999999875 7788988887754
No 182
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=1.3e-05 Score=89.57 Aligned_cols=114 Identities=21% Similarity=0.222 Sum_probs=72.8
Q ss_pred cchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchhhcc
Q 047503 567 GSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVEIKN 645 (920)
Q Consensus 567 ~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~i~~ 645 (920)
...++..+.-++.|+.|||+.|.+.+.- .+..|++|+.|+|++|.+..+|.- ...+. |+.|++++|.++++- ++.+
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~ 252 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIEN 252 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHh
Confidence 3344555666677777788777776553 566777777778877777766632 22333 777777777777764 5777
Q ss_pred cccCCeEeecccCCCcccccccccCccCCcccCccccccccC
Q 047503 646 LKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 646 l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
|.+|++|++++|-+..+. . ...++.|..|..|++.+|.
T Consensus 253 LksL~~LDlsyNll~~hs---e-L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHS---E-LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHhhhhcch---h-hhHHHHHHHHHHHhhcCCc
Confidence 777888887776332211 1 1124566677777776665
No 183
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.11 E-value=0.033 Score=55.98 Aligned_cols=121 Identities=22% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCCCccccchhhHHHHHHHHh---cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 047503 168 IEDDEVVGIESARDILIGWLV---NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 168 ~~~~~~~Gr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (920)
+.-++++|.|..++.|++-.. .+. ...-+.++|..|.|||++++.+.+...-++ .--|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------
Confidence 345689999999999876543 332 355667899999999999999887421111 222333211
Q ss_pred HHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCC---chhhhHHHHhccCC----CCCcEEEEEccc
Q 047503 245 MIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWK---IELWGDVEHALLDN----KKGSRIMLTTRH 317 (920)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~----~~gs~iivTtR~ 317 (920)
++. +...+...++. +..||+|.+||+.- ...+..++..|-.+ .....|..||-.
T Consensus 90 ---------------~L~--~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 90 ---------------DLG--DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred ---------------Hhc--cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 000 12333333332 34789999999842 34566777666532 233445555555
Q ss_pred hhhh
Q 047503 318 KAVA 321 (920)
Q Consensus 318 ~~v~ 321 (920)
++..
T Consensus 151 RHLv 154 (249)
T PF05673_consen 151 RHLV 154 (249)
T ss_pred hhcc
Confidence 5443
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.05 E-value=0.0048 Score=71.75 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=39.7
Q ss_pred CccccchhhHHHHHHHHhcCC---CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGR---KQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++++|-++.++++..|+.... ....++.|+|..|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999987642 23468999999999999999999874
No 185
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.05 E-value=0.00011 Score=65.28 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=61.4
Q ss_pred hccCCeeeEEEccCCCCCcCcccccC-cccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeE
Q 047503 574 VAEFKLMKVLDFEDAPIEFLPEEVGN-LFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYL 652 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp~~i~~-l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 652 (920)
+.+...|...+|++|.+.++|+.+.. .+.+..|++++|.+..+|..+..++.|+.|+++.|.+...|..+..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34555677777888877777766554 34777778888878888877777788888888877777777777777777777
Q ss_pred eeccc
Q 047503 653 LVYHS 657 (920)
Q Consensus 653 ~l~~~ 657 (920)
+..+|
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 76664
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.03 Score=59.78 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 047503 279 DKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASV 355 (920)
Q Consensus 279 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 355 (920)
+++-++|+|+++... .-..+...+-....++.+|++|... .+...+.+- ...+.+.+++.+++.+.+.+.. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR--Cq~i~~~~~~~~~~~~~L~~~~--~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR--CQRLEFKLPPAHEALAWLLAQG--V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh--heEeeCCCcCHHHHHHHHHHcC--C-
Confidence 456789999998763 4445666665555677777777654 333222221 1678999999999988886531 1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 356 SDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 356 ~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
. ...+..++..++|.|+.+..+.
T Consensus 187 -----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1235677899999998665443
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.019 Score=62.38 Aligned_cols=168 Identities=13% Similarity=0.147 Sum_probs=87.3
Q ss_pred cccc-chhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 172 EVVG-IESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 172 ~~~G-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.++| -+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+..--....... .+..-..-+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4566 5666777777776553 35678999999999999998875531000000000 0000000000000000
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHH----hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQY----LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 323 (920)
..... ...+......+++.+.+... ..+.+=++|+|+++.. +....+...+-....++.+|++|.+.. +...
T Consensus 78 pD~~~-i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHL-VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEE-eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 00000 00000112223322222111 1245567999999765 345667777776666777777776543 3322
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHH
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
..+- ...+++.+++.++..+.+.+.
T Consensus 157 IrSR--c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSR--CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhh--ceeeeCCCCCHHHHHHHHHHc
Confidence 2221 278999999999998877653
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0099 Score=64.88 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
....-+.+.|++|+|||+||.+++.+ ..|..+--++- + ++-.+++..-..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e--------------------~miG~sEsaKc~ 585 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------E--------------------DMIGLSESAKCA 585 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------H--------------------HccCccHHHHHH
Confidence 35677889999999999999999864 56765443321 1 112223333333
Q ss_pred HHH----HHhcCCcEEEEEEcCCCchhhhH------------HHHhccC-CCCCcE--EEEEccchhhhhhcccC-Cccc
Q 047503 272 AVR----QYLHDKNYMIVLDDVWKIELWGD------------VEHALLD-NKKGSR--IMLTTRHKAVADFCKQS-SFVQ 331 (920)
Q Consensus 272 ~l~----~~L~~kr~LlVlDdv~~~~~~~~------------l~~~l~~-~~~gs~--iivTtR~~~v~~~~~~~-~~~~ 331 (920)
.++ ..-+..--.||+||++..-+|-. +...+.. ..+|-| |+-||...++...|+-. .+..
T Consensus 586 ~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~ 665 (744)
T KOG0741|consen 586 HIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSS 665 (744)
T ss_pred HHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhh
Confidence 344 44455668999999987644433 2333332 223444 45577777887766543 3446
Q ss_pred eeecCCCCH-HHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHh
Q 047503 332 VHELEALPA-VEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKC 375 (920)
Q Consensus 332 ~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c 375 (920)
.|.++.++. ++..+.++..-. -.+.+...++.+...+|
T Consensus 666 ~i~Vpnl~~~~~~~~vl~~~n~------fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 666 TIHVPNLTTGEQLLEVLEELNI------FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred eeecCccCchHHHHHHHHHccC------CCcchhHHHHHHHhccc
Confidence 889999988 677777766431 12334556666666666
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.98 E-value=0.029 Score=67.94 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=66.3
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
..++|-+..++.|.+.+... .....++.++|+.|+|||+||+.++.. . +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 46788888889888887632 123457899999999999999999874 2 23345555544211111
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCc-EEEEEEcCCCc--hhhhHHHHhcc
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKN-YMIVLDDVWKI--ELWGDVEHALL 303 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~~--~~~~~l~~~l~ 303 (920)
+..-++.. ++.. ..+. ...+.+.++.++ -+|+||+++.. +.+..+...+.
T Consensus 526 -~~~lig~~-----~gyv-g~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 -VSRLIGAP-----PGYV-GFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -HHHHhcCC-----CCCc-ccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11111111 1111 1111 122344444444 59999999865 45566665554
No 190
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.97 E-value=0.042 Score=57.60 Aligned_cols=57 Identities=28% Similarity=0.282 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 047503 177 ESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLL 242 (920)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (920)
++-++++..++..+. -|.+.|.+|+|||+||+.+.+. ... ..++++.....+..+++
T Consensus 8 ~~l~~~~l~~l~~g~----~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSGY----PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcCC----eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 344566666665543 4568999999999999999862 222 34556666655555544
No 191
>PHA00729 NTP-binding motif containing protein
Probab=96.92 E-value=0.0076 Score=60.23 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++.+...+ ...|.|.|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455554444 567899999999999999999874
No 192
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.019 Score=64.00 Aligned_cols=156 Identities=14% Similarity=0.202 Sum_probs=91.1
Q ss_pred CccccchhhHHHHHHHHhcC---C-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---R-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
.++=|.++...++.+++..- + ...+-|.+||++|.|||.||+.++++ .. +-++.++-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch-----
Confidence 46778999999988877531 1 24678889999999999999999985 32 233444322
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc---hhhh----------HHHHhccCC--
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI---ELWG----------DVEHALLDN-- 305 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~----------~l~~~l~~~-- 305 (920)
+|+.+. ...+++.+.+.+.+.-+.-++++++|+++.. ..|. ++...+...
T Consensus 258 ---eivSGv------------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 258 ---EIVSGV------------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN 322 (802)
T ss_pred ---hhhccc------------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 222222 2224455555556666678999999999764 1221 233222221
Q ss_pred --CCCcEEEE---EccchhhhhhcccC-CccceeecCCCCHHHHHHHHHHHhcC
Q 047503 306 --KKGSRIML---TTRHKAVADFCKQS-SFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 306 --~~gs~iiv---TtR~~~v~~~~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
..|-.||| |+|...+-...... .+++-+.+..=++..-.++++..+-+
T Consensus 323 ~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 323 EKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred cccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 12333433 55655544443332 23456777666666656666555543
No 193
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.012 Score=67.13 Aligned_cols=161 Identities=19% Similarity=0.310 Sum_probs=89.7
Q ss_pred CCccccchhhHHHHHHHHhcC----CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG----RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (920)
+.+-+|.++-+++|+++|.-. .-.-+++++||++|||||+|++-+++- ....| +-++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHh----
Confidence 567799999999999999642 223479999999999999999999884 44444 23444444333221
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-h-----hhHHHHhc------------cCCC-
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-L-----WGDVEHAL------------LDNK- 306 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-~-----~~~l~~~l------------~~~~- 306 (920)
.+.... -+-+++ ..+.+.+++ .+.++-+++||.++... + -..++..| .+..
T Consensus 393 ----RGHRRT----YIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 393 ----RGHRRT----YIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred ----cccccc----ccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 111000 011222 223333332 24578899999997531 0 11111111 1111
Q ss_pred CCcEE-EEEccc-hh-hh-hhcccCCccceeecCCCCHHHHHHHHHHHhc
Q 047503 307 KGSRI-MLTTRH-KA-VA-DFCKQSSFVQVHELEALPAVEAWRLFCRKAF 352 (920)
Q Consensus 307 ~gs~i-ivTtR~-~~-v~-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 352 (920)
-=|.| .|||-+ -+ +. .....+ .++++.+-+++|=.++-+++..
T Consensus 463 DLS~VmFiaTANsl~tIP~PLlDRM---EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 463 DLSKVMFIATANSLDTIPAPLLDRM---EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred chhheEEEeecCccccCChHHhcce---eeeeecCCChHHHHHHHHHhcc
Confidence 12334 333332 22 11 122222 6788888888888777776653
No 194
>PRK08181 transposase; Validated
Probab=96.89 E-value=0.0029 Score=65.90 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=29.3
Q ss_pred HHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 185 GWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 185 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
+|+... .-+.++|..|+|||.||..+.+. .......++|+++
T Consensus 101 ~~~~~~----~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 101 SWLAKG----ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred HHHhcC----ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 566433 35899999999999999999875 2223334566543
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.065 Score=57.40 Aligned_cols=183 Identities=9% Similarity=0.032 Sum_probs=97.0
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcc
Q 047503 179 ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSAL 258 (920)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 258 (920)
..+.+...+..+. -.+.+.++|+.|+||+++|+.+..---=..... ...+..-..=+.+...-..+...-.+
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3455666666543 246888999999999999998755310000000 00000000000000000000000000
Q ss_pred ccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccch-hhhhhcccCCcc
Q 047503 259 GEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFV 330 (920)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~ 330 (920)
.+-.....++..+ +.+.+ .+++=++|+|+++.. .....+...+-....++.+|++|.+. .+...+.+- .
T Consensus 82 ~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR--C 158 (325)
T PRK06871 82 IDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR--C 158 (325)
T ss_pred ccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh--c
Confidence 0001123333332 22322 255668889999876 45667777777766777777777655 333222211 1
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHH
Q 047503 331 QVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAI 382 (920)
Q Consensus 331 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai 382 (920)
..+.+.+++.++..+.+.+.... . ...+...+..++|.|..+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~-------~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA-------E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc-------C---hHHHHHHHHHcCCCHHHH
Confidence 78999999999999888775411 1 112456678899999643
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.87 E-value=0.086 Score=52.91 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=102.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe-CCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV-GRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
+..++.++|.-|.|||.+.+..... ..+ +.++=|.+ ........+...|+.++...... . -.....+..+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~----~-~~~~~e~~~~ 120 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKV----N-VNAVLEQIDR 120 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccc----h-hHHHHHHHHH
Confidence 3579999999999999999954332 111 11222333 23456667777777777653100 0 0111233334
Q ss_pred HHHHHh-cCCc-EEEEEEcCCCc--hhhhHHHHhccCCCCCc---EEEEEccch--------hhhhhcccCCccce-eec
Q 047503 272 AVRQYL-HDKN-YMIVLDDVWKI--ELWGDVEHALLDNKKGS---RIMLTTRHK--------AVADFCKQSSFVQV-HEL 335 (920)
Q Consensus 272 ~l~~~L-~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs---~iivTtR~~--------~v~~~~~~~~~~~~-~~l 335 (920)
.+.+.. +++| ..+++||.... +..+.++........++ +|+..-..+ .....- ..... |++
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~---~R~~ir~~l 197 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE---QRIDIRIEL 197 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh---heEEEEEec
Confidence 444444 4577 89999998764 34444443332111111 233332221 111111 11133 999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHh
Q 047503 336 EALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGG 387 (920)
Q Consensus 336 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~ 387 (920)
.|++.++...+++....+... ..+---.+....|..+..|.|.++.-++.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~--~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGL--PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CCcChHHHHHHHHHHHhccCC--CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999998888765532 22222345667889999999999988765
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.84 E-value=0.016 Score=55.73 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=75.4
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc------------------CCCCceEEEEeCCCC
Q 047503 175 GIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM------------------NHFDCRAWITVGREC 236 (920)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~wv~v~~~~ 236 (920)
|-++..+.+.+.+..+. -.+.+.++|..|+||+|+|..+.+.---. ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 44566777777776654 34578899999999999998876531111 11222333322211
Q ss_pred CHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-----CCcEEEEEEcCCCc--hhhhHHHHhccCCCCCc
Q 047503 237 MKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-----DKNYMIVLDDVWKI--ELWGDVEHALLDNKKGS 309 (920)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 309 (920)
-.....++.. .+.+.+. +++=++|+||++.. +.+..++..+-....++
T Consensus 79 ------------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~ 133 (162)
T PF13177_consen 79 ------------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENT 133 (162)
T ss_dssp ------------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTE
T ss_pred ------------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCE
Confidence 0022333333 3333332 35668999999876 56778888887777789
Q ss_pred EEEEEccchh-hhhhcccCCccceeecCCCC
Q 047503 310 RIMLTTRHKA-VADFCKQSSFVQVHELEALP 339 (920)
Q Consensus 310 ~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~ 339 (920)
.+|++|.+.. +.....+-. ..+.+.++|
T Consensus 134 ~fiL~t~~~~~il~TI~SRc--~~i~~~~ls 162 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRSRC--QVIRFRPLS 162 (162)
T ss_dssp EEEEEES-GGGS-HHHHTTS--EEEEE----
T ss_pred EEEEEECChHHChHHHHhhc--eEEecCCCC
Confidence 9988888765 222221111 556666654
No 198
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.83 E-value=0.035 Score=60.35 Aligned_cols=219 Identities=13% Similarity=0.153 Sum_probs=125.3
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHH-HHHhcCccccCCCCceEEEEeCCCC---CHHHHHHHHHHHHhh
Q 047503 176 IESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLA-GKLFNNQYVMNHFDCRAWITVGREC---MKKDLLIKMIKEFHQ 251 (920)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~v~~~~---~~~~~~~~i~~~l~~ 251 (920)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++.++.+. +..+++.+-. +-..++..++.|++-
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 6678899999998876 579999999999999999 777765222 4444432211 122233333333321
Q ss_pred -------------------h-ccCCccccCCcCCHHHHHHHHH-------H-------------------Hhc---CCcE
Q 047503 252 -------------------L-TGQSALGEMNNMEEKDLIIAVR-------Q-------------------YLH---DKNY 282 (920)
Q Consensus 252 -------------------~-~~~~~~~~~~~~~~~~l~~~l~-------~-------------------~L~---~kr~ 282 (920)
. .|.. . ...+....++.+.+. . +|. .++-
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqK-a-GfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~P 150 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQK-A-GFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRP 150 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccc-c-CCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCC
Confidence 0 0110 0 111111122221111 1 111 2367
Q ss_pred EEEEEcCCCc-----hhhhHHHH--hccCCCCCcEEEEEccchhhhhhccc---CCccceeecCCCCHHHHHHHHHHHhc
Q 047503 283 MIVLDDVWKI-----ELWGDVEH--ALLDNKKGSRIMLTTRHKAVADFCKQ---SSFVQVHELEALPAVEAWRLFCRKAF 352 (920)
Q Consensus 283 LlVlDdv~~~-----~~~~~l~~--~l~~~~~gs~iivTtR~~~v~~~~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~~ 352 (920)
+||+|+.-.. -.|+.+.. +..-..+-..||++|-+......... ......+.|.-.+.+.|..+..++.-
T Consensus 151 VVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 151 VVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred EEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 8999998543 12333321 11122345678888887665543322 12336788999999999999999875
Q ss_pred CCCCC----------C-CC----ChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHHh
Q 047503 353 ASVSD----------G-GC----PPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLE 404 (920)
Q Consensus 353 ~~~~~----------~-~~----~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~ 404 (920)
..... . .. ......-....++..||=-.-+..+++.++......+.-.++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43110 0 00 01244455677888999999999999999887653344444444
No 199
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.82 E-value=0.006 Score=62.51 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=33.7
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 179 ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
.+..+.++..........+.++|.+|+|||+||..+++. ....-..++++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~ 135 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV 135 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH
Confidence 344445554433323457899999999999999999986 3222335566643
No 200
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.016 Score=57.60 Aligned_cols=176 Identities=20% Similarity=0.234 Sum_probs=99.6
Q ss_pred CCccccchhhHHH---HHHHHhcCC----CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 047503 170 DDEVVGIESARDI---LIGWLVNGR----KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLL 242 (920)
Q Consensus 170 ~~~~~Gr~~~~~~---l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (920)
-++++|-++.+.+ |.++|.+++ =.++-|..+|++|.|||.+|+.+.|.. +-.| +.+. ..+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vk----at~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVK----ATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEec----hHHHH
Confidence 3578998877765 677776653 146889999999999999999999963 2222 2221 11111
Q ss_pred HHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-CCcEEEEEEcCCCc----------hhhhHHHHhcc----C--C
Q 047503 243 IKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-DKNYMIVLDDVWKI----------ELWGDVEHALL----D--N 305 (920)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~----------~~~~~l~~~l~----~--~ 305 (920)
.+ ..+ +....+..+.+.-+ .-++.+.+|.++.. .+-.++..+|. . .
T Consensus 189 Ge---hVG--------------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e 251 (368)
T COG1223 189 GE---HVG--------------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE 251 (368)
T ss_pred HH---Hhh--------------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc
Confidence 11 110 01222333333332 36799999998653 12223333332 1 2
Q ss_pred CCCcEEEEEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 306 KKGSRIMLTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 306 ~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
+.|-..|-.|.+.+.....-...+..-++...-+++|-..++..++-.- |-.+..-.+.++++.+|+.
T Consensus 252 neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~------Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF------PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC------CCccccCHHHHHHHhCCCC
Confidence 3465666666665544322112222456777778888899988887332 2222233556667777653
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.79 E-value=0.0029 Score=61.47 Aligned_cols=66 Identities=24% Similarity=0.455 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc-cCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHH
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYV-MNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVR 274 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (920)
.|.|+|++|+||||||+++...... .-+.|...|-.. ....+.++....+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------------------~~~~~~~~~~~~~~ 53 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------------------WQERDDDDMIADIS 53 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------------------cccCCHHHHHHHHH
Confidence 4789999999999999998764211 123455555211 11123355666667
Q ss_pred HHhcCCcEEEEEEcCCC
Q 047503 275 QYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 275 ~~L~~kr~LlVlDdv~~ 291 (920)
+.+.+.+ .|+|+...
T Consensus 54 ~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 54 NFLLKHD--WIIDGNYS 68 (171)
T ss_pred HHHhCCC--EEEcCcch
Confidence 7776666 57787743
No 202
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.058 Score=56.62 Aligned_cols=202 Identities=15% Similarity=0.211 Sum_probs=116.3
Q ss_pred CccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
.++=|.++.+++|.+.+.-+ =+.++-|.++|++|.|||-||+.|+++ .... |+.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH----
Confidence 45668898888888776421 135788999999999999999999996 3333 3444322
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcC-CcEEEEEEcCCCc-------------hhhh---HHHHhc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHD-KNYMIVLDDVWKI-------------ELWG---DVEHAL 302 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~-------------~~~~---~l~~~l 302 (920)
++.+ ..-+ + ...+.+.+.+.-+. .+..|.+|.++.. +... ++...+
T Consensus 220 ElVq----KYiG---E----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 220 ELVQ----KYIG---E----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred HHHH----HHhc---c----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 2222 1111 1 13455555555554 5799999998653 1122 233333
Q ss_pred cCC--CCCcEEEEEccchhhhh--hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 303 LDN--KKGSRIMLTTRHKAVAD--FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 303 ~~~--~~gs~iivTtR~~~v~~--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
... ...-|||..|-..++.. .+.....+..++++.=+.+.-.++|+=++....-. ..-++ ..+++.|.|.
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~--~dvd~----e~la~~~~g~ 356 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA--DDVDL----ELLARLTEGF 356 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc--cCcCH----HHHHHhcCCC
Confidence 322 34568998887776543 33444455778888555555567777676544321 11223 4456666666
Q ss_pred h----HHHHHHHhhhcC--CCC--ChHHHHHHHhcc
Q 047503 379 P----LAIVAVGGLLST--KHG--SVSEWRRSLEGL 406 (920)
Q Consensus 379 P----lai~~~~~~l~~--~~~--~~~~w~~~~~~~ 406 (920)
. -|+.+=|++++- ... +.+++.++.++.
T Consensus 357 sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 357 SGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred chHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 4 355566665532 221 345555555444
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.064 Score=63.11 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=70.1
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
..++|-+..++.+.+.+... ..+..+...+|+.|||||-||+.++.. .-+.=+..+-+ |+.+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~------DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRI------DMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceee------chHHHHH
Confidence 57889999999998888642 234678888999999999999998763 11111223333 3333222
Q ss_pred HH-HHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcE-EEEEEcCCCc--hhhhHHHHhccC
Q 047503 244 KM-IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNY-MIVLDDVWKI--ELWGDVEHALLD 304 (920)
Q Consensus 244 ~i-~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~~ 304 (920)
.- +..+-+ .+|+-+ ..+ + ...|.+..+.++| +|.||.++.. +.++-+.+.|.+
T Consensus 563 kHsVSrLIG----aPPGYV-Gye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 KHSVSRLIG----APPGYV-GYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHhC----CCCCCc-eec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 11 111111 112111 111 1 3345666778887 8889999865 566666666654
No 204
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.0057 Score=62.83 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
...+.++|..|+|||+||..+++. .......++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH
Confidence 457899999999999999999996 3333445677665
No 205
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.068 Score=57.06 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=98.0
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC-----cccc--------------CCCCceEEEEeCCCCCH
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN-----QYVM--------------NHFDCRAWITVGRECMK 238 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-----~~~~--------------~~F~~~~wv~v~~~~~~ 238 (920)
...+++...+..+. -.+.+.++|..|+||+++|+.+..- .... .|-| ..|+.-..
T Consensus 10 ~~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~---- 83 (319)
T PRK06090 10 PVWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK---- 83 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc----
Confidence 34556666665543 3568899999999999999987552 1000 0111 12221100
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEE
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRI 311 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 311 (920)
+......+++. .+.+.+ .+.+=++|+|+++.. .....+...+-....++.+
T Consensus 84 ---------------------~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~f 141 (319)
T PRK06090 84 ---------------------EGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLF 141 (319)
T ss_pred ---------------------CCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEE
Confidence 00122333332 222332 234568899999876 4677777777766667777
Q ss_pred EEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 312 MLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 312 ivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
|++|.+. .+...+.+-. ..+.+.+++.++..+.+.... . . ....++..++|.|+.+..+
T Consensus 142 iL~t~~~~~lLpTI~SRC--q~~~~~~~~~~~~~~~L~~~~--~----~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 142 LLVTHNQKRLLPTIVSRC--QQWVVTPPSTAQAMQWLKGQG--I----T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEEECChhhChHHHHhcc--eeEeCCCCCHHHHHHHHHHcC--C----c-------hHHHHHHHcCCCHHHHHHH
Confidence 7766654 3332222211 789999999999988886531 0 1 1346788999999976554
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.72 E-value=0.019 Score=69.68 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=96.5
Q ss_pred CccccchhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN-----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
.++.|.+..++.|.+.+.- +-...+-+.++|++|.|||++|+.+++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4678888888888776642 1123456889999999999999999985 22222 23321 1
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--------h------hhhHHHHhccC-
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--------E------LWGDVEHALLD- 304 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------~------~~~~l~~~l~~- 304 (920)
+++. .. ...+...+...+...-...+.+|++|+++.. . ....+...+..
T Consensus 522 ~l~~----~~------------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~ 585 (733)
T TIGR01243 522 EILS----KW------------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI 585 (733)
T ss_pred HHhh----cc------------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc
Confidence 1111 10 0011122222333333456799999998642 0 11123333332
Q ss_pred -CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 305 -NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 305 -~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
...+--||.||....... . .........+.++..+.++-.++|+.+.....- ....+ ...+++.+.|.-
T Consensus 586 ~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 586 QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHcCCCC
Confidence 223445666776554332 2 222234477889999999999999766533211 11112 355667777763
No 207
>PTZ00494 tuzin-like protein; Provisional
Probab=96.71 E-value=0.65 Score=50.54 Aligned_cols=172 Identities=14% Similarity=0.132 Sum_probs=104.3
Q ss_pred CCCccccchhhHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNG-RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
....+|.|+.+-..+.+.|.+- ..+++++.+.|.-|.||++|.+.....+. -..++|++... ++-++.+++
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHHH
Confidence 3567889999988888888764 35789999999999999999998766422 24677888654 445778888
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhhhc
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVADFC 324 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 324 (920)
.++.+.-+.-.+-.+- ..+-...-+....++.-+||+-=-+.. ..+.+. ..|.....-|.|++---.+.+....
T Consensus 441 ALgV~nve~CGDlLdF--I~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGF--VEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HhCCCChhhhccHHHH--HHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 8876521110000000 011122222234456666665432221 123222 2334444567787765555443322
Q ss_pred ccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 325 KQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 325 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
...+....|.+++++.++|.++..+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 222333789999999999999887754
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.016 Score=70.41 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+++... -...+-+.++|.+|+||||||+.+++. .... ++.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH----
Confidence 45889999999998877421 022467889999999999999999884 2222 2233211
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhHHHHhccCC-
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-------------LWGDVEHALLDN- 305 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~- 305 (920)
++.. .. .......+...+.......+.+|++|+++... ....+...+...
T Consensus 247 ~i~~----~~------------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~ 310 (733)
T TIGR01243 247 EIMS----KY------------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK 310 (733)
T ss_pred HHhc----cc------------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc
Confidence 1110 00 00011223333444445567899999986421 112233333322
Q ss_pred CCCcEEEE-Eccchh-hhhhccc-CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 306 KKGSRIML-TTRHKA-VADFCKQ-SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 306 ~~gs~iiv-TtR~~~-v~~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
..+..+|+ ||.... +...... ..+...+.+...+.++..+++....-... .. .......+++.+.|..
T Consensus 311 ~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~----l~--~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 311 GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP----LA--EDVDLDKLAEVTHGFV 381 (733)
T ss_pred cCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC----Cc--cccCHHHHHHhCCCCC
Confidence 22333444 444332 2222211 11235678888888888888885542211 00 0122456777787764
No 209
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.70 E-value=0.065 Score=58.47 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHhcCC-CCcEEEEEEcCCCCcHHHHHHHHhcCcccc--CCC---CceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 177 ESARDILIGWLVNGR-KQRSVVALVGQGGIGKTTLAGKLFNNQYVM--NHF---DCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 177 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F---~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
+.-.+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+...-. ..+ ..-+|-.....--...++.+|..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 445667778777653 568999999999999999999987752222 111 23344443333234556666666665
Q ss_pred hhccCCccc----------------------cCC-------------------------------------cCCHHHHHH
Q 047503 251 QLTGQSALG----------------------EMN-------------------------------------NMEEKDLII 271 (920)
Q Consensus 251 ~~~~~~~~~----------------------~~~-------------------------------------~~~~~~l~~ 271 (920)
...+..... ... ..+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (325)
T PF07693_consen 82 KHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELIS 161 (325)
T ss_pred HhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHHH
Confidence 432111000 000 001112344
Q ss_pred HHHHHhc--CCcEEEEEEcCCCc------hhhhHHHHhccCCCCCcEEEEEccchhhhhhcccCC---------------
Q 047503 272 AVRQYLH--DKNYMIVLDDVWKI------ELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQSS--------------- 328 (920)
Q Consensus 272 ~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~--------------- 328 (920)
.+.+.+. ++|.+||+||++.. +.|+.+...+.. ++..+|+..-...+........
T Consensus 162 ~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~--~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 162 KIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDF--PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred HHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCC--CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh
Confidence 5555553 47899999999874 244444443332 5677777776666655432210
Q ss_pred -ccceeecCCCCHHHHHHHHHHH
Q 047503 329 -FVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 329 -~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
...++.+++.+..+-..+|...
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHH
Confidence 0135677777766655555554
No 210
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.69 E-value=0.0021 Score=61.41 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeE--cCCCCccccEE
Q 047503 771 KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMI--DKGAMPCLREL 848 (920)
Q Consensus 771 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L 848 (920)
.+...++|++|.+.. .+.|.+++.|..|.|.+|.+...-+.....+|+|+.|.+.+++ +..+.. ....||.|+.|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 556677777776532 3455677777778887776654444444567888888888753 232211 24578899999
Q ss_pred EEecCCCCCccC----cccCCCCCCCEEEEecChH
Q 047503 849 KIGPCPLLKEIP----AGIEHLRNLEILKFCGMLT 879 (920)
Q Consensus 849 ~l~~c~~l~~lp----~~l~~l~~L~~L~l~~~~~ 879 (920)
.+-+|+.-. -+ -.+..+|+|+.||+.+...
T Consensus 119 tll~Npv~~-k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhc-ccCceeEEEEecCcceEeehhhhhH
Confidence 998888322 11 1367789999999998763
No 211
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.68 E-value=0.097 Score=64.58 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=74.4
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
..++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+... ....-...+.++.+.-.+... ..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-VA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-HH
Confidence 46899999999999988752 112467889999999999999999874 222222334444433211111 11
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCc-EEEEEEcCCCc--hhhhHHHHhccCCC-----------CCc
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKN-YMIVLDDVWKI--ELWGDVEHALLDNK-----------KGS 309 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~-----------~gs 309 (920)
.-++.. ++- -..+. ...+.+.++.++ .+|+||+++.. +.+..+...+..+. ..+
T Consensus 642 ---~l~g~~-----~g~-~g~~~---~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 642 ---RLIGAP-----PGY-VGYEE---GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred ---HhcCCC-----CCc-cCccc---ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 111111 110 11110 112333343333 49999999865 46666766664331 234
Q ss_pred EEEEEccc
Q 047503 310 RIMLTTRH 317 (920)
Q Consensus 310 ~iivTtR~ 317 (920)
-||+||..
T Consensus 710 iiI~TSn~ 717 (852)
T TIGR03346 710 VIIMTSNL 717 (852)
T ss_pred EEEEeCCc
Confidence 57778765
No 212
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.62 E-value=0.0066 Score=65.24 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCc-eEEEEeCCCC-CHHHHHHHHHHHHhhhccC
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDC-RAWITVGREC-MKKDLLIKMIKEFHQLTGQ 255 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~ 255 (920)
....++++.+..-..+ .-+.|+|..|+|||||++.+++.. ..++-+. ++|+.+.+.. ++.++.+.+...+......
T Consensus 118 ~~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 118 DLSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred chhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3455688888754333 345899999999999999988752 1222244 4777776654 5677777776655433111
Q ss_pred CccccCCcCCHHHHHHHHHHHh--cCCcEEEEEEcCC
Q 047503 256 SALGEMNNMEEKDLIIAVRQYL--HDKNYMIVLDDVW 290 (920)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~ 290 (920)
..+. ...........+-+++ .+++.+||+|++-
T Consensus 196 e~~~--~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPD--EHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHH--HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1110 0011111122222233 4789999999994
No 213
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.0085 Score=63.88 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=67.0
Q ss_pred cchhhHHHHHHHHhcCC--CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhh
Q 047503 175 GIESARDILIGWLVNGR--KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQL 252 (920)
Q Consensus 175 Gr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (920)
++........+++..-. +..+-+.|+|..|+|||.||..+++... ..-..+.+++++ +++.++-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 45555556666765422 2346789999999999999999999632 222345666552 4444444333111
Q ss_pred ccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhH--HHHhcc-CC-CCCcEEEEEcc
Q 047503 253 TGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGD--VEHALL-DN-KKGSRIMLTTR 316 (920)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~--l~~~l~-~~-~~gs~iivTtR 316 (920)
+ ....+.. + .+-=||||||+... ..|.. +...+. .. ..+..+|+||-
T Consensus 207 ------------~---~~~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ------------S---VKEKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ------------c---HHHHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 1122222 2 24568999999643 56753 444332 21 23456777774
No 214
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0024 Score=61.09 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=46.6
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCcccc-CCCCCcEEeecCCcccccch--hhcccccCCeEeec
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIG-RLLNLQTLDLKHSLVTQLPV--EIKNLKKLRYLLVY 655 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~ 655 (920)
..-.+||++|.+..++ .+..+..|.+|.|.+|.|..+-+.+. .+++|++|.|.+|++..+.. .+..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4455667766655432 23456666777777777666655554 35667777777666554432 25566666766666
Q ss_pred cc
Q 047503 656 HS 657 (920)
Q Consensus 656 ~~ 657 (920)
+|
T Consensus 122 ~N 123 (233)
T KOG1644|consen 122 GN 123 (233)
T ss_pred CC
Confidence 65
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.0087 Score=73.04 Aligned_cols=48 Identities=31% Similarity=0.419 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 170 DDEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...++|-+..++.+.+.+... .....++.++|+.|+|||.||+.+...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999888531 223568999999999999999988663
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.57 E-value=0.012 Score=60.40 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
|-+.|..+=+.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 33344343234689999999999999999998775 32334678999887 555544
No 217
>PRK06526 transposase; Provisional
Probab=96.53 E-value=0.0048 Score=63.86 Aligned_cols=23 Identities=39% Similarity=0.366 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.-+.|+|.+|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999998775
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.01 Score=62.02 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCC-CCceEEEEe
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNH-FDCRAWITV 232 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 232 (920)
...+.++|..|+|||+||..+++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999985 3332 345667664
No 219
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.46 E-value=0.014 Score=60.31 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcccc---CCcC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMN----HFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGE---MNNM 264 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~ 264 (920)
+.-.++.|+|.+|+|||+||.+++-...... .-..++|++....++..++ .++++........ .... ....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~-~~~~i~~~~~~ 94 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEE-VLDNIYVARAY 94 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHh-HhcCEEEEecC
Confidence 3468999999999999999999864322222 1367999998887775443 3344443322110 0000 0111
Q ss_pred CHH---HHHHHHHHHhcC--CcEEEEEEcCC
Q 047503 265 EEK---DLIIAVRQYLHD--KNYMIVLDDVW 290 (920)
Q Consensus 265 ~~~---~l~~~l~~~L~~--kr~LlVlDdv~ 290 (920)
+.. .+...+.+.+.. +.-+||+|.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 222 233445555533 45688999884
No 220
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.46 E-value=0.011 Score=59.81 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCc-cccCCc-CCHHHH
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSA-LGEMNN-MEEKDL 269 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~-~~~~~l 269 (920)
+.-+++.|+|.+|+|||++|.++... .......++|++... ++...+.. +.+.......... -....+ .+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 44689999999999999999998764 333456799999875 66554433 3332200000000 000001 111223
Q ss_pred HHHHHHHhcC-CcEEEEEEcCC
Q 047503 270 IIAVRQYLHD-KNYMIVLDDVW 290 (920)
Q Consensus 270 ~~~l~~~L~~-kr~LlVlDdv~ 290 (920)
...+.+.+.. +.-+||+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4455555544 45588889874
No 221
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.43 E-value=0.037 Score=62.88 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=92.5
Q ss_pred CccccchhhHHHHHHHHhc--------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 047503 171 DEVVGIESARDILIGWLVN--------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLL 242 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (920)
+++.|.+..++.+.+.... +-...+-|.++|++|.|||.+|+.+.+. ....| +-+..+ .++
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------KLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------Hhc
Confidence 4577877766665543211 1123567899999999999999999885 22222 112211 111
Q ss_pred HHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc----hh----------hhHHHHhccCCCCC
Q 047503 243 IKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI----EL----------WGDVEHALLDNKKG 308 (920)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~----~~----------~~~l~~~l~~~~~g 308 (920)
.. ....+...+...+...-...+++|++|+++.. .. ...+...+.....+
T Consensus 297 --------~~--------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~ 360 (489)
T CHL00195 297 --------GG--------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP 360 (489)
T ss_pred --------cc--------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc
Confidence 00 00011122222332222347899999999642 10 11122222223334
Q ss_pred cEEEEEccchh-hhhhc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 309 SRIMLTTRHKA-VADFC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 309 s~iivTtR~~~-v~~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
--||.||.... +...+ ....++..+.++.-+.++-.++|..+.......... ......+++.+.|..
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~----~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK----KYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc----ccCHHHHHhhcCCCC
Confidence 45566775543 22222 222344678888889999999998876543211001 112345666666653
No 222
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.066 Score=60.92 Aligned_cols=186 Identities=17% Similarity=0.089 Sum_probs=98.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhh
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQ 251 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (920)
+++--...+++..+.....--...-|.|.|..|+|||+||+.+++... +.+.-.+..|+++.-...+ +..|-
T Consensus 409 d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~iQ----- 480 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKIQ----- 480 (952)
T ss_pred ceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHHH-----
Confidence 333333334444443333322345788999999999999999998744 5565667777765421110 11111
Q ss_pred hccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--------hhhhH----HHHhcc-----CCCCCcE--EE
Q 047503 252 LTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--------ELWGD----VEHALL-----DNKKGSR--IM 312 (920)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------~~~~~----l~~~l~-----~~~~gs~--ii 312 (920)
..+...+.+.+.-.+-+|||||++.. .+|+. +..++. ....+.+ +|
T Consensus 481 ---------------k~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~I 545 (952)
T KOG0735|consen 481 ---------------KFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVI 545 (952)
T ss_pred ---------------HHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEE
Confidence 12233445556678999999999642 12332 112221 1234444 34
Q ss_pred EEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHHHHH
Q 047503 313 LTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAIVAV 385 (920)
Q Consensus 313 vTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai~~~ 385 (920)
.|........ . ....-+.....+.++...+-.++++....... .....+...-+..+|+|. |.-++++
T Consensus 546 at~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-----~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 546 ATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL-----SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh-----hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 4443332211 1 11222234677888888887777766542221 111233334478888876 5444443
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.43 E-value=0.0025 Score=68.08 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=40.8
Q ss_pred CccccchhhHHHHHHHHhcC----CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG----RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++|.++.++++++++... +...+++.++|+.|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999753 234689999999999999999999775
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.2 Score=54.19 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=97.9
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccCCCCc-----eEEEEeCCCCCHHHHHHHHHHHH
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---VMNHFDC-----RAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F~~-----~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
..-+++...+.++. -.+-+.+.|..|+||+|+|..+...-- -...-.| .-++..+.-+|...+.
T Consensus 9 ~~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT------- 80 (334)
T ss_pred HHHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------
Confidence 34566777776653 357888999999999999988654210 0000000 0000000001100000
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hh
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VA 321 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 321 (920)
.+ ..-.....++..+ +.+.+ .+++=++|+|+++.. +.-..+...+-....++.+|++|.+.+ +.
T Consensus 81 ----p~---~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (334)
T PRK07993 81 ----PE---KGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLL 152 (334)
T ss_pred ----cc---cccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 00 0001123333332 22222 256678999999876 456667777776666777777776643 33
Q ss_pred hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHH
Q 047503 322 DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIV 383 (920)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~ 383 (920)
..+.+-. ..+.+.+++.++..+.+.+.. + .+ .+.+..++..++|.|..+.
T Consensus 153 pTIrSRC--q~~~~~~~~~~~~~~~L~~~~-~------~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 153 ATLRSRC--RLHYLAPPPEQYALTWLSREV-T------MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHhcc--ccccCCCCCHHHHHHHHHHcc-C------CC---HHHHHHHHHHcCCCHHHHH
Confidence 2222111 678999999999988776542 1 11 2335678899999997443
No 225
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.41 E-value=0.038 Score=67.79 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.+..++.|...+... +....++.++|+.|+|||++|+.+++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999998888632 122357889999999999999999874
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=96.41 E-value=0.0075 Score=62.86 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+.|+|..|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999764
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.35 E-value=0.014 Score=57.98 Aligned_cols=90 Identities=19% Similarity=0.149 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCC--CHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGREC--MKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
++|+.+||+.|+||||.+-+++.....+ -..+..|+. +.+ ...+.++...+.++.+... .....+..+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~-D~~R~ga~eQL~~~a~~l~vp~~~----~~~~~~~~~~~~ 73 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISA-DTYRIGAVEQLKTYAEILGVPFYV----ARTESDPAEIAR 73 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-STSSTHHHHHHHHHHHHHTEEEEE----SSTTSCHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecC-CCCCccHHHHHHHHHHHhccccch----hhcchhhHHHHH
Confidence 4799999999999999998887753333 345667765 333 3455677777777654211 001112333333
Q ss_pred HHHHHhcCC-cEEEEEEcCC
Q 047503 272 AVRQYLHDK-NYMIVLDDVW 290 (920)
Q Consensus 272 ~l~~~L~~k-r~LlVlDdv~ 290 (920)
...+.++.+ .=+|++|-..
T Consensus 74 ~~l~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-S
T ss_pred HHHHHHhhcCCCEEEEecCC
Confidence 222223333 3477788764
No 228
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.059 Score=61.38 Aligned_cols=105 Identities=21% Similarity=0.415 Sum_probs=66.0
Q ss_pred CCCccccchhhHHHHHHHHhcC----CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNG----RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (920)
-+++-+|+++-+++|++++.-. .-+-++++.+|++|||||++|+-++.- ....| +-++|+.-.|..++
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeI--- 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEI--- 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhh---
Confidence 3567899999999999999643 334689999999999999999999874 43444 23455555554332
Q ss_pred HHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc
Q 047503 245 MIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI 292 (920)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~ 292 (920)
.+.... -+-.++ ..+++.++. .+..+-|+.+|.|+..
T Consensus 481 -----kGHRRT----YVGAMP-GkiIq~LK~-v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 481 -----KGHRRT----YVGAMP-GKIIQCLKK-VKTENPLILIDEVDKL 517 (906)
T ss_pred -----ccccee----eeccCC-hHHHHHHHh-hCCCCceEEeehhhhh
Confidence 111000 011121 223333332 2456789999999643
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.34 E-value=0.0026 Score=58.01 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
||.|+|++|+||||+|+++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 230
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.34 E-value=0.015 Score=59.06 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=73.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC-----CCCHHHHHHHHHHHHhhhccCCccccCCcCCHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR-----ECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKD 268 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 268 (920)
-.+++|||.+|.||||+++.+.. ....-.+.++..-.+ .....+-..++++.++... +.........+..+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQ 114 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPE-EFLYRYPHELSGGQ 114 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchh
Confidence 45999999999999999999987 333233334433211 1123334555555554221 01111122334444
Q ss_pred HHH-HHHHHhcCCcEEEEEEcCCCch---hhhHHHHhccC--CCCCcEEEEEccchhhhhhcc
Q 047503 269 LII-AVRQYLHDKNYMIVLDDVWKIE---LWGDVEHALLD--NKKGSRIMLTTRHKAVADFCK 325 (920)
Q Consensus 269 l~~-~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 325 (920)
.++ .+.+.|.-++-++|.|..-+.- .-.++...+.+ ...|-..+..|-+-.++..++
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 444 5667778899999999975542 22334333332 234666777888877776554
No 231
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.33 E-value=0.0049 Score=60.21 Aligned_cols=37 Identities=30% Similarity=0.330 Sum_probs=25.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
..-+.++|..|+|||.||..+.+.. +... ..+.|+++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEeec
Confidence 3569999999999999999998852 2222 34667654
No 232
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.29 E-value=0.17 Score=57.86 Aligned_cols=205 Identities=10% Similarity=0.048 Sum_probs=117.0
Q ss_pred CccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCcc------ccCCCCceEEEEeCCCCCHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQY------VMNHFDCRAWITVGRECMKKDL 241 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~v~~~~~~~~~ 241 (920)
..+-+||.+..+|-.++..- ...-+.+-|.|.+|.|||..+..|.+.-. --..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 45678999999998888652 23345999999999999999999988421 123343 334444444567778
Q ss_pred HHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-----CCcEEEEEEcCCCchh--hhHHHHhccC-CCCCcEEEE
Q 047503 242 LIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-----DKNYMIVLDDVWKIEL--WGDVEHALLD-NKKGSRIML 313 (920)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iiv 313 (920)
...|.+++... ...+..-...+..+.. .+.+++++|+++..-. -+-+-..|.+ ..++||++|
T Consensus 475 Y~~I~~~lsg~----------~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 475 YEKIWEALSGE----------RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHhcccC----------cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 88887777554 2233444555555553 3468999999865421 2223333332 345787776
Q ss_pred Eccchh--hhh-----hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 314 TTRHKA--VAD-----FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 314 TtR~~~--v~~-----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
-+-... ... ....--....+...|-+.++-.++......+.. ...+...+-++++|+.--|..-.|+.+.-
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~--~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD--AFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh--hcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 553221 110 000101114566777777777766666554331 12223344445555555555555544444
Q ss_pred hh
Q 047503 387 GL 388 (920)
Q Consensus 387 ~~ 388 (920)
+.
T Consensus 623 RA 624 (767)
T KOG1514|consen 623 RA 624 (767)
T ss_pred HH
Confidence 43
No 233
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.28 E-value=0.025 Score=55.60 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=65.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE---eCCCCCHHHHHH------HHHHHHhhhccCCccccCCcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT---VGRECMKKDLLI------KMIKEFHQLTGQSALGEMNNM 264 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~~~------~i~~~l~~~~~~~~~~~~~~~ 264 (920)
-.+++|+|..|.|||||++.++.. .....+.+++. +. ..+...... ++++.++... .........
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~--~~~~~~~~L 98 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAH--LADRPFNEL 98 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHh--HhcCCcccC
Confidence 359999999999999999999873 22334444442 21 112222111 1233332210 011122334
Q ss_pred CHHHHH-HHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCC-CC-CcEEEEEccchhhh
Q 047503 265 EEKDLI-IAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDN-KK-GSRIMLTTRHKAVA 321 (920)
Q Consensus 265 ~~~~l~-~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 321 (920)
+..+.+ -.+...+-..+-++++|+.-.. ...+.+...+... .. |..||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 433332 3455566677888999997532 2333444444322 12 56788888776654
No 234
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.21 Score=56.78 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=83.5
Q ss_pred CccccchhhHHHHHHHHhc---C--------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN---G--------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~---~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++=|.|+-+.++.+.+.- . -...+-|..+|++|.|||++|+.+.+. -+-.| +.++..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----
Confidence 4455577666666544431 1 135788999999999999999999994 33343 333221
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhHHHHhccCCC
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-------------LWGDVEHALLDNK 306 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~ 306 (920)
+ +... +...++..+.+.+++.=+--+.+|.||.++... ....+..-+....
T Consensus 503 E--------L~sk--------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 503 E--------LFSK--------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred H--------HHHH--------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 1 1111 011122223333333223356888889886531 1222322333322
Q ss_pred CCcEEEE---Eccchhhhhh-cccCCccceeecCCCCHHHHHHHHHHHhcCC
Q 047503 307 KGSRIML---TTRHKAVADF-CKQSSFVQVHELEALPAVEAWRLFCRKAFAS 354 (920)
Q Consensus 307 ~gs~iiv---TtR~~~v~~~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 354 (920)
....|+| |-|...+-.+ +.....+..+.+++=+.+...++|+.++...
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 2233333 4444444333 3333344667777666677789999988654
No 235
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.03 Score=61.16 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=82.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccC-------------------CCCceEEEEe
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMN-------------------HFDCRAWITV 232 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v 232 (920)
.++|-+....++..+........+.+.++|+.|+||||+|..+.+.-.-.. ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467788889999999886543345699999999999999999877411000 1123444444
Q ss_pred CCCCCH---HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCC
Q 047503 233 GRECMK---KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKK 307 (920)
Q Consensus 233 ~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~ 307 (920)
+..... .+.++++.+..... . ..++.-++++|+++... .-..+...+-....
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~----------~-------------~~~~~kviiidead~mt~~A~nallk~lEep~~ 138 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSES----------P-------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPK 138 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccC----------C-------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCC
Confidence 433321 22222222221111 0 02567899999998763 34455555555666
Q ss_pred CcEEEEEccch-hhhhhcccCCccceeecCCCCH
Q 047503 308 GSRIMLTTRHK-AVADFCKQSSFVQVHELEALPA 340 (920)
Q Consensus 308 gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~ 340 (920)
.+.+|++|... .+..-..+- ...+.+.+.+.
T Consensus 139 ~~~~il~~n~~~~il~tI~SR--c~~i~f~~~~~ 170 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSR--CQRIRFKPPSR 170 (325)
T ss_pred CeEEEEEcCChhhccchhhhc--ceeeecCCchH
Confidence 78888888733 232212111 15666666333
No 236
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.26 Score=53.32 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCC
Q 047503 279 DKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASV 355 (920)
Q Consensus 279 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 355 (920)
+++=++|+|+++.. +.+..+...+-....++.+|++|.+. .+...+.+- ...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR--cq~i~~~~~~~~~~~~~L~~~~--~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR--CRQFPMTVPAPEAAAAWLAAQG--V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc--CEEEEecCCCHHHHHHHHHHcC--C-
Confidence 44568899999876 46778888777767777666666554 333222221 1789999999999998887642 1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 356 SDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 356 ~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
.+ ...++..++|.|..+..+
T Consensus 206 -----~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -----AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -----Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123567789999755444
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.24 E-value=0.02 Score=55.14 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM 237 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (920)
++.|+|.+|+||||+|+.+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999775 223345678888765543
No 238
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.22 E-value=0.049 Score=56.79 Aligned_cols=137 Identities=17% Similarity=0.106 Sum_probs=72.3
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcc
Q 047503 179 ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSAL 258 (920)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 258 (920)
..+.++..|.... ...-++|+|..|.|||||.+.+... + ......+++.-.+ ....+-..++.............
T Consensus 97 ~~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCEE-eecchhHHHHHHHhccccccccc
Confidence 4555555665432 3578999999999999999999874 2 2223344432111 00001112232222111000000
Q ss_pred ccCCcCCHHHHHHHHHHHhc-CCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhh
Q 047503 259 GEMNNMEEKDLIIAVRQYLH-DKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 323 (920)
...+-.+...-...+...+. ..+=++++|.+...+.+..+...+. .|..+|+||-...+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00111111111223344443 4788999999987776666665553 47789999987766443
No 239
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.22 E-value=0.096 Score=56.76 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 173 VVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++|....+.++.+.+..-...-.-|.|.|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777788887777654333456789999999999999999874
No 240
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.017 Score=59.23 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccc--CCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVM--NHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
.++|.++|++|.|||+|.+..++.-.++ .++....-+.+ +...++.++..+-+. -...+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi----nshsLFSKWFsESgK-------------lV~kmF~ 239 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI----NSHSLFSKWFSESGK-------------LVAKMFQ 239 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE----ehhHHHHHHHhhhhh-------------HHHHHHH
Confidence 5899999999999999999999975443 34444444444 344555555443322 2356778
Q ss_pred HHHHHhcCCc--EEEEEEcCCC
Q 047503 272 AVRQYLHDKN--YMIVLDDVWK 291 (920)
Q Consensus 272 ~l~~~L~~kr--~LlVlDdv~~ 291 (920)
+|.+.+.++. ..+.+|.|+.
T Consensus 240 kI~ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHHHHhCCCcEEEEEeHHHHH
Confidence 8888887765 4556788865
No 241
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.18 E-value=0.018 Score=59.56 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=34.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCC-HHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECM-KKDLLIKM 245 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~-~~~~~~~i 245 (920)
.-++|+|..|+||||||+++++. ++.+| +.++++-+++... ..++..++
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~ 120 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEM 120 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHH
Confidence 46789999999999999999986 55455 5566666766543 33444433
No 242
>PRK06696 uridine kinase; Validated
Probab=96.16 E-value=0.0062 Score=62.23 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHhc-CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 176 IESARDILIGWLVN-GRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 176 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
|++-+++|.+.+.. ..+...+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56777888888865 2345889999999999999999999874
No 243
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.11 E-value=0.041 Score=56.43 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC------CceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcccc---CC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF------DCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGE---MN 262 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~ 262 (920)
+.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+ .++.+....... ..... ..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~-~~~~~i~~~~ 92 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPE-EVLDNIYVAR 92 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchh-hhhccEEEEe
Confidence 346799999999999999999986542 1222 56899998877776544 333333221100 00000 11
Q ss_pred cCCHHHHHHHHHHHhc---C-CcEEEEEEcCC
Q 047503 263 NMEEKDLIIAVRQYLH---D-KNYMIVLDDVW 290 (920)
Q Consensus 263 ~~~~~~l~~~l~~~L~---~-kr~LlVlDdv~ 290 (920)
..+.+++...+.+... . +.-|||+|.+.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 1234555555555543 3 44589999984
No 244
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.10 E-value=0.00092 Score=77.63 Aligned_cols=238 Identities=20% Similarity=0.188 Sum_probs=128.0
Q ss_pred hhhccCCeeeEEEccCCC-CCc--CcccccCcccCceeeecCC-C-cccc----CccccCCCCCcEEeecCCc-cccc--
Q 047503 572 KLVAEFKLMKVLDFEDAP-IEF--LPEEVGNLFHLHYLSVRNT-K-VKVL----PKSIGRLLNLQTLDLKHSL-VTQL-- 639 (920)
Q Consensus 572 ~~~~~l~~Lr~L~L~~~~-~~~--lp~~i~~l~~L~~L~L~~~-~-i~~l----p~~i~~L~~L~~L~L~~~~-l~~l-- 639 (920)
.....+++|+.|.+.++. +.. +-.....+++|+.|+++++ . +... +.....+.+|+.|+++.+. ++..
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 344557777777777764 322 2234455667777777652 1 1111 1222345666666666553 3321
Q ss_pred chhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEE-ecCCcchhHHH
Q 047503 640 PVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQ-LTNDDGKNLCA 717 (920)
Q Consensus 640 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~-~~~~~~~~l~~ 717 (920)
......+++|++|.+.+|.. .+ .....-...+++|++|+++ +.......+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~--------------------------lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSN--------------------------LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred HHHHhhCCCcceEccCCCCc--------------------------cchhHHHHHHHhcCcccEEeeecCccchHHHHHH
Confidence 11122255555555444310 00 1122233456778888888 44444444555
Q ss_pred HhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCC----C-CCccccCCCCcceEEEEeeccCCCc-cccc
Q 047503 718 SIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMK----N-LPDWIFKLKNLVRIGLYWSELTNDP-MNVL 791 (920)
Q Consensus 718 ~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~----~-lp~~~~~l~~L~~L~L~~~~l~~~~-~~~l 791 (920)
...++++|+.|.+..... .+ .++.+.+.+... . ......++++|+.+.|..|...... ...+
T Consensus 316 ~~~~c~~l~~l~~~~~~~-----------c~-~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l 383 (482)
T KOG1947|consen 316 LLKNCPNLRELKLLSLNG-----------CP-SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL 383 (482)
T ss_pred HHHhCcchhhhhhhhcCC-----------Cc-cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh
Confidence 566677777766554322 11 444444444311 1 1224567899999999998854444 3566
Q ss_pred CCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCC--CCccccEEEEecCCCCC
Q 047503 792 QALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKG--AMPCLRELKIGPCPLLK 857 (920)
Q Consensus 792 ~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~c~~l~ 857 (920)
.++|+|. ..+.. ....+..|+.|.+..|...+.-..... .+.+++.+++.+|+.+.
T Consensus 384 ~gc~~l~-~~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 384 RGCPNLT-ESLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cCCcccc-hHHHH---------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 7777773 33221 112233488999988876655433221 17778888888888654
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.015 Score=62.57 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
.-+.++|..|+|||+||..+++.. ...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH
Confidence 679999999999999999999863 222235666654
No 246
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.06 E-value=0.066 Score=51.07 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEcC----CCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcc
Q 047503 268 DLIIAVRQYLHDKNYMIVLDDV----WKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCK 325 (920)
Q Consensus 268 ~l~~~l~~~L~~kr~LlVlDdv----~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 325 (920)
+..-.|.+.+-+++-+++-|.- +..-.|+-+.-.---+..|+.||++|-+..+...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3344566677788888998864 334466544333223556899999999998876553
No 247
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.06 E-value=0.041 Score=51.78 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHH-HHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKD-LIIA 272 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~ 272 (920)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+.- ....+..+ ..-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~---------~~~lS~G~~~rv~ 80 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGY---------FEQLSGGEKMRLA 80 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEE---------EccCCHHHHHHHH
Confidence 3589999999999999999987742 2233444442100 0000 00012122 2223
Q ss_pred HHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 273 VRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 273 l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
+...+-.++-++++|+.-.. .....+...+... +..||++|.+.+...
T Consensus 81 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 81 LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 44555567778899987532 3333444444332 246777777765543
No 248
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.06 E-value=0.0062 Score=68.50 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=39.2
Q ss_pred ccccchhhHHHHHHHHhc----CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 172 EVVGIESARDILIGWLVN----GRKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+++|.++.+++|++.|.. -+..-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999932 234568999999999999999999987
No 249
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.028 Score=61.57 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=36.9
Q ss_pred Cccccchh---hHHHHHHHHhcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIES---ARDILIGWLVNGR-------KQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~---~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+++-|-|+ |+++|+++|.++. .=++-|.++|++|.|||-||+.|+-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45667765 6677899997752 23578899999999999999999875
No 250
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.041 Score=55.94 Aligned_cols=123 Identities=13% Similarity=0.175 Sum_probs=70.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc-----cc------CCC---CceEEEEeCCCC------CH----------------
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQY-----VM------NHF---DCRAWITVGREC------MK---------------- 238 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~-----~~------~~F---~~~~wv~v~~~~------~~---------------- 238 (920)
.+++|+|+.|.|||||.+.+.--.. +. ..+ ..+.||+=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999866200 10 001 235555421111 11
Q ss_pred ------HHHHHHHHHHHhhhccCCccccCCcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc------hhhhHHHHhccCC
Q 047503 239 ------KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI------ELWGDVEHALLDN 305 (920)
Q Consensus 239 ------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~ 305 (920)
++...+.+++++... -....+.+.+..+.++ .|.+.|.+++=|+|||.--.. ...-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~--~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMED--LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchh--hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 133344444443321 1112355666666665 566778899999999986432 2233333444433
Q ss_pred CCCcEEEEEccchhhh
Q 047503 306 KKGSRIMLTTRHKAVA 321 (920)
Q Consensus 306 ~~gs~iivTtR~~~v~ 321 (920)
|+.|++.|-+-...
T Consensus 189 --g~tIl~vtHDL~~v 202 (254)
T COG1121 189 --GKTVLMVTHDLGLV 202 (254)
T ss_pred --CCEEEEEeCCcHHh
Confidence 88899999886544
No 251
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.00046 Score=68.84 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=41.1
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccch--hhcccccCCeEeec
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPV--EIKNLKKLRYLLVY 655 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~ 655 (920)
.+.+.|++.||.+..+. ...+|+.|+.|.|+-|.|+.| ..+..|++|+.|.|+.|.|..+.. .+.++|+|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34445555555554331 122455555555555555555 234455666666666555554432 35566666666666
Q ss_pred cc
Q 047503 656 HS 657 (920)
Q Consensus 656 ~~ 657 (920)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 54
No 252
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.97 E-value=0.02 Score=68.55 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|-++.++.|.+.+... ......+.++|+.|+|||++|+.+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999998888631 223567899999999999999999774
No 253
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.94 E-value=0.0082 Score=59.97 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=58.2
Q ss_pred hhhhhhccCCeeeEEEccCCCCC-cCc----ccccCcccCceeeecCCCccccCc--------------cccCCCCCcEE
Q 047503 569 FMTKLVAEFKLMKVLDFEDAPIE-FLP----EEVGNLFHLHYLSVRNTKVKVLPK--------------SIGRLLNLQTL 629 (920)
Q Consensus 569 ~~~~~~~~l~~Lr~L~L~~~~~~-~lp----~~i~~l~~L~~L~L~~~~i~~lp~--------------~i~~L~~L~~L 629 (920)
++...+.+|+.|+..+|++|.|. ..| +.|++-..|..|.+++|.+..+.. ...+-+.|++.
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 34455678889999999998876 444 345566778888888887663321 12244777787
Q ss_pred eecCCcccccchhh-----cccccCCeEeecccC
Q 047503 630 DLKHSLVTQLPVEI-----KNLKKLRYLLVYHSD 658 (920)
Q Consensus 630 ~L~~~~l~~lp~~i-----~~l~~L~~L~l~~~~ 658 (920)
+...|++...|... ..-.+|+.+.+..|+
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNg 196 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNG 196 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecC
Confidence 77777777655432 233567777776654
No 254
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.93 E-value=0.053 Score=66.60 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=73.5
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
..++|-+..++.|...+... .....++.++|+.|+|||+||+.+.+. .-+.-...+-++.++-.+...+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-H
Confidence 56899999999998887531 223456789999999999999998763 2111122333444332111111 1
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCc-EEEEEEcCCCc--hhhhHHHHhccCC-----------CCCc
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKN-YMIVLDDVWKI--ELWGDVEHALLDN-----------KKGS 309 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~gs 309 (920)
.-++.+ ++ ....+. ...+.+.++.++ -+++||+++.. +.+..+...+-.+ -..+
T Consensus 586 ---~l~g~~-----~g-yvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 586 ---KLIGSP-----PG-YVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred ---HhcCCC-----Cc-ccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 111111 11 111111 113445555555 58999999865 4566666655432 1345
Q ss_pred EEEEEccch
Q 047503 310 RIMLTTRHK 318 (920)
Q Consensus 310 ~iivTtR~~ 318 (920)
-+|+||...
T Consensus 654 i~I~Tsn~g 662 (821)
T CHL00095 654 LIIMTSNLG 662 (821)
T ss_pred EEEEeCCcc
Confidence 667776643
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.018 Score=59.74 Aligned_cols=74 Identities=28% Similarity=0.303 Sum_probs=44.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..-+.++|.+|+|||.||..+.+... ..--.+.++++ .+++.++....... .....+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~---------------~~~~~l 161 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEG---------------RLEEKL 161 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcC---------------chHHHH
Confidence 55788999999999999999999633 32234666654 34555554443221 112222
Q ss_pred HHHhcCCcEEEEEEcCCC
Q 047503 274 RQYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~ 291 (920)
.+.++ +-=||||||+..
T Consensus 162 ~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 162 LRELK-KVDLLIIDDIGY 178 (254)
T ss_pred HHHhh-cCCEEEEecccC
Confidence 22221 234899999965
No 256
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.90 E-value=0.049 Score=55.52 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=36.2
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM 237 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (920)
|-+.|..+=+.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 33444333234689999999999999999998764 222334678887655554
No 257
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.18 Score=59.08 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=103.1
Q ss_pred CccccchhhHHH---HHHHHhcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDI---LIGWLVNGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~---l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
.++.|-|+.+++ ++++|.+++ .-++=+.++|++|.|||-||+.++-.. .+-|++++.+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH-----
Confidence 467787765554 566666542 236788899999999999999998852 3445666543
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCch-----------------hhhHHHHhc
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKIE-----------------LWGDVEHAL 302 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~-----------------~~~~l~~~l 302 (920)
+.++-+... . ....+.+...- ...++.|.+|+++... .+.++..-+
T Consensus 379 ---EFvE~~~g~------------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 379 ---EFVEMFVGV------------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred ---HHHHHhccc------------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh
Confidence 111111111 0 11222222222 2456888889885421 122232222
Q ss_pred cCCCC--CcEEEEEccchhhhh--hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 303 LDNKK--GSRIMLTTRHKAVAD--FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 303 ~~~~~--gs~iivTtR~~~v~~--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
..... +--++-+|...++.. .+.....+..+.++.=+.....++|..++-... ...+..+.++ |+.+.-|.
T Consensus 443 Dgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~----~~~e~~dl~~-~a~~t~gf 517 (774)
T KOG0731|consen 443 DGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK----LDDEDVDLSK-LASLTPGF 517 (774)
T ss_pred cCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC----CCcchhhHHH-HHhcCCCC
Confidence 22222 233444666655543 234444557788888888889999998885542 1234456666 88888888
Q ss_pred hHH
Q 047503 379 PLA 381 (920)
Q Consensus 379 Pla 381 (920)
+=|
T Consensus 518 ~ga 520 (774)
T KOG0731|consen 518 SGA 520 (774)
T ss_pred cHH
Confidence 754
No 258
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.87 E-value=0.03 Score=60.10 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc---C-CCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM---N-HFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+-+.|..+=+.-.++.|+|.+|+|||||+.+++...... + .-..++||+....|+..+ +.++++.+
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 3444444443456899999999999999999886532121 1 123579999988888776 34444444
No 259
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.87 E-value=0.041 Score=54.01 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcc-------cc-CCcCC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSAL-------GE-MNNME 265 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~-~~~~~ 265 (920)
-.+++|+|..|.|||||++.+.--. ..-.+.+++.-. +.......+-..+.-. .+... .. ....+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~-~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVL-NQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEE-ccCCeeecccHHHhhcccCC
Confidence 3589999999999999999997641 122333333211 1111101111111000 00000 00 12233
Q ss_pred HHHHH-HHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 266 EKDLI-IAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 266 ~~~l~-~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
..+.+ -.+...+-.++=++++|+.... ...+.+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 33322 2445556677788999998543 222333333332223677888888776554
No 260
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.85 E-value=0.052 Score=52.83 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35999999999999999999876
No 261
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.85 E-value=0.01 Score=55.79 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
||.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998753
No 262
>PRK07667 uridine kinase; Provisional
Probab=95.83 E-value=0.011 Score=58.70 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+.|.+.+....+...+|+|-|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56777777776666799999999999999999998874
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.081 Score=57.25 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhhhccCCccccCCcCCHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK--KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLI 270 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 270 (920)
+.++|+|+|.+|+||||++..++... ...=..+..++. +.+.. .+-+....+.++.. -....+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~a-Dt~RiaAvEQLk~yae~lgip-------v~v~~d~~~L~ 309 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITT-DHSRIGTVQQLQDYVKTIGFE-------VIAVRDEAAMT 309 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEec-CCcchHHHHHHHHHhhhcCCc-------EEecCCHHHHH
Confidence 35799999999999999999987642 222123444543 33332 22222222222111 01122445565
Q ss_pred HHHHHHhcC-CcEEEEEEcCCC
Q 047503 271 IAVRQYLHD-KNYMIVLDDVWK 291 (920)
Q Consensus 271 ~~l~~~L~~-kr~LlVlDdv~~ 291 (920)
..+...-.. +.=+|++|-...
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHHHhccCCCEEEEeCccc
Confidence 555443222 234778888754
No 264
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.82 E-value=0.018 Score=55.55 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 197 VALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
+.|.|..|+|||++|.++... ....++++.-.+.++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH
Confidence 679999999999999998653 2246778877777655
No 265
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.029 Score=65.90 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc---cccCCC-CceEE-EEeCCCCCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQ---YVMNHF-DCRAW-ITVGRECMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~w-v~v~~~~~~~~~~~~i 245 (920)
+.++||++|+.++++.|....++.+| ++|.+|||||++|.-++..- .+-... +..++ +++ ..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~------g~----- 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL------GS----- 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH------HH-----
Confidence 46899999999999999987665555 68999999999876655420 111111 11111 111 10
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCch--------hh--hHHHHhccCCCCCcEEEEE
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKIE--------LW--GDVEHALLDNKKGSRIMLT 314 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~--------~~--~~l~~~l~~~~~gs~iivT 314 (920)
+. .+.. ... +-++..+.+-+.+ +.++..+.+|.+.+.- .. ..+..|....+.--.|=.|
T Consensus 237 ---Lv--AGak----yRG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGAT 306 (786)
T COG0542 237 ---LV--AGAK----YRG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGAT 306 (786)
T ss_pred ---Hh--cccc----ccC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEec
Confidence 10 0111 111 1233344444444 3458999999986541 12 2233332223323345556
Q ss_pred ccchhhhhhccc---CCccceeecCCCCHHHHHHHHHHHh
Q 047503 315 TRHKAVADFCKQ---SSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 315 tR~~~v~~~~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
|-++.--...+. ....+.+.+..-+.+++..+++...
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 655432111100 0112678888888888888876543
No 266
>PRK09354 recA recombinase A; Provisional
Probab=95.80 E-value=0.031 Score=60.06 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=61.2
Q ss_pred HHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccC
Q 047503 183 LIGWLV-NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEM 261 (920)
Q Consensus 183 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 261 (920)
|-.+|. .+=+.-+++-|+|..|+||||||.+++.. ....-..++||+..+.++.. .+++++.....-....+
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp 120 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQP 120 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecC
Confidence 334444 33234679999999999999999998764 33344678999988877752 34444432111000011
Q ss_pred CcCCHHHHHHHHHHHhcC-CcEEEEEEcCC
Q 047503 262 NNMEEKDLIIAVRQYLHD-KNYMIVLDDVW 290 (920)
Q Consensus 262 ~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 290 (920)
.+.++....+...++. ..-+||+|.|-
T Consensus 121 --~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 121 --DTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred --CCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1345556666666544 55699999984
No 267
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.80 E-value=0.16 Score=52.96 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHH-HHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECMKK-DLLIKMI 246 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~-~~~~~i~ 246 (920)
..++|-.++...+-+|+... .+...-|.|+|+.|.|||+|.-.+..+ ...| +...-|........+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 46789999999999888753 112446679999999999999887775 2223 334455555544432 2456666
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHhcC------CcEEEEEEcCCCch--hhhHHH-Hhc---c-CCCCCcEEEE
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHD------KNYMIVLDDVWKIE--LWGDVE-HAL---L-DNKKGSRIML 313 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~------kr~LlVlDdv~~~~--~~~~l~-~~l---~-~~~~gs~iiv 313 (920)
.|+........ ....+-.+-...+-+.|+. -+..+|+|.++--. .-+.+. ..| . ...+-|-|-+
T Consensus 101 rql~~e~~~~~---k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 101 RQLALELNRIV---KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHhhhh---eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 66654321110 0111112223344444432 24778888775421 111111 111 1 2335567788
Q ss_pred Eccchhhh---hhcccCCc-cceeecCCCCHHHHHHHHHHHh
Q 047503 314 TTRHKAVA---DFCKQSSF-VQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 314 TtR~~~v~---~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
|||-.... +.+++-.. -.++-+++++-++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99876432 22222111 1355677778888888887765
No 268
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.77 E-value=0.028 Score=59.88 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
+.-+++-|+|.+|+||||||.+++.. ....-..++||+..+.++.. .+++++.....-.. ..-.+.++...
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v--~~p~~~eq~l~ 123 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLI--SQPDTGEQALE 123 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHhee--cCCCCHHHHHH
Confidence 34679999999999999999997764 33344578899987776653 33444322111000 01113455666
Q ss_pred HHHHHhcC-CcEEEEEEcCC
Q 047503 272 AVRQYLHD-KNYMIVLDDVW 290 (920)
Q Consensus 272 ~l~~~L~~-kr~LlVlDdv~ 290 (920)
.+...++. .--+||+|.+-
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 66665544 45699999974
No 269
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.74 E-value=0.05 Score=52.91 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=61.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC---ccccCC---CC--ceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN---QYVMNH---FD--CRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNME 265 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~---~~~~~~---F~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 265 (920)
-.+++|+|..|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.+..... .........+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~-~~~~~~~~LS 89 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYL-TLGQKLSTLS 89 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCcc-ccCCCcCcCC
Confidence 358999999999999999988532 111111 11 12332 21 344455443210 0111233344
Q ss_pred HHHHH-HHHHHHhcCC--cEEEEEEcCCCc---hhhhHHHHhccC-CCCCcEEEEEccchhhhh
Q 047503 266 EKDLI-IAVRQYLHDK--NYMIVLDDVWKI---ELWGDVEHALLD-NKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 266 ~~~l~-~~l~~~L~~k--r~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 322 (920)
..+.+ -.+...+-.+ +=++++|+.-.. ...+.+...+.. ...|..||++|.+.+...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33332 2344455556 678888987443 223333333332 124677888888876654
No 270
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.74 E-value=0.077 Score=62.10 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 170 DDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...++|....+.++++.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 468999999999999888654323445679999999999999999875
No 271
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.74 E-value=0.043 Score=63.57 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++++|.+..++.+...+.... ..-|.|+|..|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999988776543 345678999999999999999763
No 272
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.73 E-value=0.052 Score=58.54 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=45.0
Q ss_pred HHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc----cCCCCceEEEEeCCCCCHHHHHHHHHHHHhh
Q 047503 185 GWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV----MNHFDCRAWITVGRECMKKDLLIKMIKEFHQ 251 (920)
Q Consensus 185 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (920)
+.|..+=+.-+++-|.|.+|+|||+|+.+++-.... .+.-..++||+....|++.++.. +++.++.
T Consensus 117 ~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 117 ELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred hhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 334443234688999999999999999987532112 11224789999999999887644 5555543
No 273
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.72 E-value=0.014 Score=57.23 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT 231 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (920)
+..+|.+.|+.|+||||+|+.+++. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 3569999999999999999999884 444555566653
No 274
>PRK04132 replication factor C small subunit; Provisional
Probab=95.69 E-value=0.29 Score=59.07 Aligned_cols=154 Identities=13% Similarity=0.034 Sum_probs=93.6
Q ss_pred CCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCC
Q 047503 202 QGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDK 280 (920)
Q Consensus 202 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k 280 (920)
+.++||||+|..++++. ....+ ..++-++.++.... +.+++++..+.... .. -..+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgi-d~IR~iIk~~a~~~---------~~------------~~~~ 630 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGI-NVIREKVKEFARTK---------PI------------GGAS 630 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccH-HHHHHHHHHHHhcC---------Cc------------CCCC
Confidence 67899999999999862 11222 23566666654333 35555555543220 00 0124
Q ss_pred cEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch-hhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCC
Q 047503 281 NYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSD 357 (920)
Q Consensus 281 r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 357 (920)
.-++|+|+++... +...+...+-.....+++|++|.+. .+.....+- ...+.+.+++.++....+.+.+....
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR--C~~i~F~~ls~~~i~~~L~~I~~~Eg-- 706 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFRPLRDEDIAKRLRYIAENEG-- 706 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh--ceEEeCCCCCHHHHHHHHHHHHHhcC--
Confidence 5799999998774 6666666666545566777666554 332222221 27899999999998888776553221
Q ss_pred CCCChhHHHHHHHHHHHhCCchH-HHHHH
Q 047503 358 GGCPPELEKLSHEIVAKCGGLPL-AIVAV 385 (920)
Q Consensus 358 ~~~~~~l~~~~~~I~~~c~glPl-ai~~~ 385 (920)
... ..+....|++.++|.+- |+..+
T Consensus 707 i~i---~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 707 LEL---TEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 011 14577889999999875 44433
No 275
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.68 E-value=0.044 Score=58.62 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM----NHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
|-+.|..+=+.-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....|++..+. ++++.++
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 333444432346899999999999999998865321121 112478999999988887764 4555554
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.67 E-value=0.028 Score=59.84 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
+.-+++-|+|.+|+||||||.++... ....-..++||+..+.++.. .+++++.....-.. ....+.++...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v--~~p~~~eq~l~ 123 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLV--SQPDTGEQALE 123 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEE--ecCCCHHHHHH
Confidence 34689999999999999999987764 33334568899887766653 34444332111000 11113455556
Q ss_pred HHHHHhc-CCcEEEEEEcCC
Q 047503 272 AVRQYLH-DKNYMIVLDDVW 290 (920)
Q Consensus 272 ~l~~~L~-~kr~LlVlDdv~ 290 (920)
.+...++ +..-+||+|.+-
T Consensus 124 ~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHhhccCCcEEEEcchh
Confidence 6665554 356799999984
No 277
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.65 E-value=0.024 Score=59.02 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=39.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMN----HFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-.+.=|+|.+|+|||.|+.+++-...+.. .=..++||+-...|+...+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 46888999999999999988754322221 22469999999999887764 455543
No 278
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.65 E-value=0.021 Score=53.31 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=60.2
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCceEEEEeCCCCCHHHHHHHHHHHHhhh
Q 047503 174 VGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV-MNHFDCRAWITVGRECMKKDLLIKMIKEFHQL 252 (920)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (920)
||....++++.+.+..-.....-|.|.|..|+||+++|+.++..... ...|..+ ..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~-------------------- 57 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DC-------------------- 57 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CH--------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---ch--------------------
Confidence 56777778887777653223456789999999999999998875221 1222110 00
Q ss_pred ccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccC-CCCCcEEEEEccch
Q 047503 253 TGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLD-NKKGSRIMLTTRHK 318 (920)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs~iivTtR~~ 318 (920)
...+ .+.+.+ .+.--++++|++... ....+...+.. .....|+|.||+..
T Consensus 58 ---------~~~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 58 ---------ASLP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------HCTC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------hhCc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0111 111111 144557799998763 44455555553 35678999998765
No 279
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.63 E-value=0.13 Score=61.17 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=84.1
Q ss_pred CccccchhhHHHHHHHH---hcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWL---VNGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
.++.|.+..++++.+.+ .... .-.+-|.|+|.+|.|||++|+.+.+. ....| +.++.+ +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~------~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGS------D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehH------H
Confidence 35677776666654443 2211 11345899999999999999999874 22222 222221 1
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hhhhHHHHhc----cC
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------ELWGDVEHAL----LD 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~~~~l~~~l----~~ 304 (920)
+. ..... .....+...+...-...+.+|++|+++.. ..+......+ ..
T Consensus 221 ~~----~~~~g------------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg 284 (644)
T PRK10733 221 FV----EMFVG------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 284 (644)
T ss_pred hH----Hhhhc------------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc
Confidence 11 00100 01122333333333456789999999653 1122222222 11
Q ss_pred --CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 305 --NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 305 --~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
...+.-+|.||...+... . ......+..+.+..-+.++-.+++..+...
T Consensus 285 ~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 123445566777665432 2 222233467888888888888888877643
No 280
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.60 E-value=0.056 Score=58.50 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 184 IGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH----FDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 184 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-+.|..+=+.-.++-|+|.+|+|||++|.+++-....... =..++||+....|++..+. ++++.+
T Consensus 92 D~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 92 DELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 3344443234689999999999999999998754222111 1479999999888887654 344444
No 281
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.60 E-value=0.0072 Score=58.41 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999998764
No 282
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.59 E-value=0.099 Score=52.34 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=39.9
Q ss_pred CcCCHHHH-HHHHHHHhcCCcEEEEEEcCCC-c--hhhhHHHHhccC--CCCCcEEEEEccchhhhhhcc
Q 047503 262 NNMEEKDL-IIAVRQYLHDKNYMIVLDDVWK-I--ELWGDVEHALLD--NKKGSRIMLTTRHKAVADFCK 325 (920)
Q Consensus 262 ~~~~~~~l-~~~l~~~L~~kr~LlVlDdv~~-~--~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 325 (920)
...+..+. .-.+.+.|-..+-+|+.|+-=. . +.=+.+...+.. ...|..||+.|-+..+|..+.
T Consensus 141 ~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 141 SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34444443 3467777788888999997521 1 122233333332 244788999999999998653
No 283
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.59 E-value=0.075 Score=58.38 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998744
No 284
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.58 E-value=0.075 Score=54.78 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=60.3
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCC----c-
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQS----A- 257 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~----~- 257 (920)
+-+.|..+=+.-+++.|+|.+|+|||+||.++.... .+ +=..++|++..+. ..++.+.+ .+++....+. .
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l 88 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYL 88 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCc
Confidence 333443443456899999999999999999985431 22 3357889888654 34444432 2332111000 0
Q ss_pred ------cc--cCCcCCHHHHHHHHHHHhcC-CcEEEEEEcCC
Q 047503 258 ------LG--EMNNMEEKDLIIAVRQYLHD-KNYMIVLDDVW 290 (920)
Q Consensus 258 ------~~--~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 290 (920)
+. .....+.+++...+.+.+.. +.-++|+|.+-
T Consensus 89 ~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 89 RIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00 01122346677777777764 55689999975
No 285
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.52 E-value=0.027 Score=56.28 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH-HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK-DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
.+|.|+|..|.||||++..+... ........+++ +.++.... .-...++.+- +. ..+.....+.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----------~v-g~~~~~~~~~i 67 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----------EV-GLDTLSFENAL 67 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----------cc-CCCccCHHHHH
Confidence 47899999999999999987664 33333344443 22221100 0000000000 00 11123345667
Q ss_pred HHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 274 RQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
+..+...+=.|++|.+.+.+.+..+.... ..|..++.|+-...+..
T Consensus 68 ~~aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 68 KAALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HHHhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 77787777899999998776555444332 23556777776665443
No 286
>PRK13695 putative NTPase; Provisional
Probab=95.52 E-value=0.032 Score=54.48 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 287
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.22 Score=53.76 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHH
Q 047503 279 DKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 279 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
+++-++|+|++...+ .-..+...+-....++.+|++|.+.. +...+... ...+.+.+++.++..+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR--c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR--CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH--hhhhcCCCCCHHHHHHHHHhc
Confidence 344455668887653 33444444443334566666776643 43322221 167899999999998888654
No 288
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.51 E-value=0.48 Score=47.10 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=68.6
Q ss_pred CccccchhhHHHHHHHHh---cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLV---NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
..++|.|..++.+++-.. ++. ..--|.++|.-|.|||+|++.+.+. .....-. -|.|.+. +
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~----d------- 123 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE----D------- 123 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH----H-------
Confidence 468999999998876543 332 2446779999999999999999884 3333221 2333211 0
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCC---chhhhHHHHhccCC---CCCcEEEEEccch
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWK---IELWGDVEHALLDN---KKGSRIMLTTRHK 318 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~---~~~~~~l~~~l~~~---~~gs~iivTtR~~ 318 (920)
... ...|.+.|+ .+||.|..||+.- .+.+..++..+-.+ .+.--++..|.++
T Consensus 124 ------------------l~~-Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 ------------------LAT-LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------------Hhh-HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 011 112333343 5789999999843 35677888877643 2333444445443
No 289
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.25 Score=55.42 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..-|.++|++|.|||-||+.|+|. .+-.| ++|... +++....-+ ++..+...+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYVGE----------------SErAVR~vF 597 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYVGE----------------SERAVRQVF 597 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHhhh----------------HHHHHHHHH
Confidence 567889999999999999999995 44444 455332 222221110 111222222
Q ss_pred HHHhcCCcEEEEEEcCCCc-------hhhh------HHHHhccC--CCCCcEEEEEccchhhhh--hcccCCccceeecC
Q 047503 274 RQYLHDKNYMIVLDDVWKI-------ELWG------DVEHALLD--NKKGSRIMLTTRHKAVAD--FCKQSSFVQVHELE 336 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~-------~~~~------~l~~~l~~--~~~gs~iivTtR~~~v~~--~~~~~~~~~~~~l~ 336 (920)
++.=..-+++|.+|.++.. ..|. +++--+.. ...|--||-.|-.+++.. .......+...-++
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 2222347899999999753 1222 23322332 235666777776665543 23333344677788
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 337 ALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 337 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
.=+.+|-.++++........+....-++.++++. .+|.|..
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888899999988775322222334456666653 4566653
No 290
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.48 E-value=0.17 Score=47.93 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHHHHHHHHhhhc----cCCccccCCcC---
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE---CMKKDLLIKMIKEFHQLT----GQSALGEMNNM--- 264 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~--- 264 (920)
..|-|++..|.||||+|.-..-. ..++=..+.+|..-+. ..-.. +++.+.... +....-...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~----~l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELK----ALERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHH----HHHhCCCcEEEECCCCCccCCCChHHH
Confidence 46788899999999999776543 2222223444333222 12222 222221000 00000000000
Q ss_pred --CHHHHHHHHHHHhcCCc-EEEEEEcCCCc-----hhhhHHHHhccCCCCCcEEEEEccchh
Q 047503 265 --EEKDLIIAVRQYLHDKN-YMIVLDDVWKI-----ELWGDVEHALLDNKKGSRIMLTTRHKA 319 (920)
Q Consensus 265 --~~~~l~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~~ 319 (920)
......+..++.+.... =|+|||++-.. -..+.+...+.....+.-+|+|.|+..
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 01123334445555544 59999998433 345567776766667789999999864
No 291
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.44 E-value=0.074 Score=57.47 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc---C-CCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM---N-HFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
|-+.|..+=+.-.++-|.|.+|+|||+||..++-..... + .-..++||+....|+++++ .+|++.++
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 334444443446899999999999999998876432211 1 1136999999999988775 45555554
No 292
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.43 E-value=0.011 Score=59.19 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=18.5
Q ss_pred CCCCCcEEeecCC--ccc-ccchhhcccccCCeEeeccc
Q 047503 622 RLLNLQTLDLKHS--LVT-QLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 622 ~L~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~l~~~ 657 (920)
.|++|+.|.++.| .+. .++....++|+|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 4555555555555 222 34434444466666666554
No 293
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.41 E-value=0.057 Score=58.53 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999998888764333456789999999999999999863
No 294
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.36 E-value=0.075 Score=51.22 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHHHHHHHHhhhccCCccccCCcCCHHHH-HH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE--CMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDL-II 271 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~ 271 (920)
.+++|+|..|.|||||.+.++-- .......+++.-... .+..+..+ ..++. ....+..+. .-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~---------~~qLS~G~~qrl 91 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAM---------VYQLSVGERQMV 91 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEE---------EEecCHHHHHHH
Confidence 59999999999999999999873 233445555432111 11111100 00100 011333332 23
Q ss_pred HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCC-CCCcEEEEEccchhhh
Q 047503 272 AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDN-KKGSRIMLTTRHKAVA 321 (920)
Q Consensus 272 ~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivTtR~~~v~ 321 (920)
.+...+-.++-++++|+.-.. ...+.+...+... ..|..||++|.+....
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 455556667788899997543 2233343333321 2366788888876543
No 295
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.27 E-value=0.38 Score=48.78 Aligned_cols=215 Identities=12% Similarity=0.183 Sum_probs=117.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc----cccCCCCceEEEEeCCC----------C-
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQ----YVMNHFDCRAWITVGRE----------C- 236 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~v~~~----------~- 236 (920)
.+.++++....+......++ ..-+.++|++|.||-|.+..+.++- -.+-+-+.+.|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d--~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGD--FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcccCC--CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 35667777777776665333 7788899999999999887665531 11223345566554443 1
Q ss_pred ----------CHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcE-EEEEEcCCCc--hhhhHHHHhcc
Q 047503 237 ----------MKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNY-MIVLDDVWKI--ELWGDVEHALL 303 (920)
Q Consensus 237 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~ 303 (920)
.-+-+..+++++..... .++ .-..+.| ++|+-.++.. +....++...-
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~------qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME 152 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQ------QIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTME 152 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhc------chh-------------hccccceEEEEEechHhhhHHHHHHHHHHHH
Confidence 12223444444443220 000 0012445 5666666543 44445554444
Q ss_pred CCCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch-HH
Q 047503 304 DNKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP-LA 381 (920)
Q Consensus 304 ~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP-la 381 (920)
.-.+.+|+|+..-+.. +-.-..+. .-.+.+..-+++|....+.+..-... ...| .+++++|+++++|.- -|
T Consensus 153 kYs~~~RlIl~cns~SriIepIrSR--Cl~iRvpaps~eeI~~vl~~v~~kE~--l~lp---~~~l~rIa~kS~~nLRrA 225 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTSRIIEPIRSR--CLFIRVPAPSDEEITSVLSKVLKKEG--LQLP---KELLKRIAEKSNRNLRRA 225 (351)
T ss_pred HHhcCceEEEEecCcccchhHHhhh--eeEEeCCCCCHHHHHHHHHHHHHHhc--ccCc---HHHHHHHHHHhcccHHHH
Confidence 4345677777443221 11111111 15688999999999999888765432 1222 688999999999874 34
Q ss_pred HHHHHhhhc-CC-------CCChHHHHHHHhccCCCCCCCC
Q 047503 382 IVAVGGLLS-TK-------HGSVSEWRRSLEGLGSKLGSDP 414 (920)
Q Consensus 382 i~~~~~~l~-~~-------~~~~~~w~~~~~~~~~~~~~~~ 414 (920)
+-++-..-- +. ....-+|+-.+.+.........
T Consensus 226 llmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQ 266 (351)
T KOG2035|consen 226 LLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQ 266 (351)
T ss_pred HHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhcc
Confidence 433322211 11 1123589888876655443333
No 296
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.24 E-value=0.036 Score=54.23 Aligned_cols=44 Identities=27% Similarity=0.272 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.++||-++.++++.-...+++ .+-+.|.|++|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 579999999999988777665 77888999999999998877766
No 297
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.23 E-value=0.024 Score=58.21 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+..+|+|.|..|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998874
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=95.22 E-value=0.14 Score=57.14 Aligned_cols=24 Identities=50% Similarity=0.700 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
...+|.++|.+|+||||.|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999998877765
No 299
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.16 E-value=0.01 Score=59.47 Aligned_cols=81 Identities=27% Similarity=0.300 Sum_probs=37.5
Q ss_pred ccCCeeeEEEccCCC--CC-cCcccccCcccCceeeecCCCccccC--ccccCCCCCcEEeecCCcccccc----hhhcc
Q 047503 575 AEFKLMKVLDFEDAP--IE-FLPEEVGNLFHLHYLSVRNTKVKVLP--KSIGRLLNLQTLDLKHSLVTQLP----VEIKN 645 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~--~~-~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp----~~i~~ 645 (920)
..+++|+.|+++.|. +. .++.....+++|++|++++|++..+. ..+..+.+|.+|++.+|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 344555666666552 22 33333334455666666665554311 12334555555555555444332 12333
Q ss_pred cccCCeEeec
Q 047503 646 LKKLRYLLVY 655 (920)
Q Consensus 646 l~~L~~L~l~ 655 (920)
+++|++|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 4555555433
No 300
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.18 Score=49.11 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHHHHHHHHhhhccCC-ccc-cC-Cc-CCHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE--CMKKDLLIKMIKEFHQLTGQS-ALG-EM-NN-MEEK 267 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~-~~~-~~-~~-~~~~ 267 (920)
-.+++|+|..|.|||||.+.++.- .....+.+++.-... ..... .-..+.-..... ... .. ++ .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHH
Confidence 358999999999999999999773 222334443321100 01111 001110000000 000 00 00 2222
Q ss_pred HH-HHHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhhh
Q 047503 268 DL-IIAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 268 ~l-~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 323 (920)
+. .-.+...+-.++-++++|+.... ...+.+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22 22345556667789999997543 2233333333322235678888887766543
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.13 E-value=0.07 Score=56.47 Aligned_cols=39 Identities=38% Similarity=0.387 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
..++.|+|.+|+||||++..++.....+..-..+..|+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 579999999999999999998764222211124555554
No 302
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.11 E-value=0.29 Score=54.69 Aligned_cols=25 Identities=44% Similarity=0.579 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+.++.++|..|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999998887664
No 303
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.14 Score=57.82 Aligned_cols=190 Identities=18% Similarity=0.175 Sum_probs=102.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|-+.-+..|...+..+. -.+-....|.-|+||||+|+-++.-- .|.-| ...+.+..-..=++|-..-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~Akal------NC~~~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKAL------NCENG-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHh------cCCCC-CCCCcchhhhhhHhhhcCCc
Confidence 467999999999999998764 23566688999999999999876531 00001 11111111111111111100
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccch-hhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHK-AVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 322 (920)
.+.-+ -+...+...++... |.+.. +++-=+.|+|.|.-. ..|..+..-+-.....-+.|..|.+. .+..
T Consensus 88 ~DviE--iDaASn~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 88 IDVIE--IDAASNTGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ccchh--hhhhhccChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 00000 00001111222222 22222 244458899999754 57888877776655566666655544 4432
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
..-+. .+.|.++.++.++-...+..-+-... ..-..+....|++..+|.
T Consensus 165 TIlSR--cq~f~fkri~~~~I~~~L~~i~~~E~-----I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 165 TILSR--CQRFDFKRLDLEEIAKHLAAILDKEG-----INIEEDALSLIARAAEGS 213 (515)
T ss_pred hhhhc--cccccccCCCHHHHHHHHHHHHHhcC-----CccCHHHHHHHHHHcCCC
Confidence 22111 17899999999988888777664322 122334555566666664
No 304
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.06 E-value=0.23 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||++.+.--
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999998653
No 305
>PRK06547 hypothetical protein; Provisional
Probab=95.04 E-value=0.03 Score=54.26 Aligned_cols=33 Identities=36% Similarity=0.448 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+...+.. ....+|.|.|.+|+||||+|+.+.+.
T Consensus 6 ~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 34789999999999999999999774
No 306
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.24 Score=48.24 Aligned_cols=121 Identities=18% Similarity=0.158 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCc--------CC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNN--------ME 265 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--------~~ 265 (920)
-.+++|+|..|.|||||++.++.. .....+.+++.-....+.. ..+-..+.-. .+. +.-... .+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~---~~~~~~i~~~-~q~-~~~~~~~tv~~~~~LS 97 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL---LKPDSGEIKVLGKDIKKEP---EEVKRRIGYL-PEE-PSLYENLTVRENLKLS 97 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEEcccch---HhhhccEEEE-ecC-CccccCCcHHHHhhcC
Confidence 358999999999999999998773 1223344444211100000 0110111000 000 000000 22
Q ss_pred HHHHH-HHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCC-CCCcEEEEEccchhhhh
Q 047503 266 EKDLI-IAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDN-KKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 266 ~~~l~-~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 322 (920)
..+.+ -.+...+-.++=++++|+.-.. ...+.+...+... ..|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 23322 2456666778889999998543 2223333333321 23677888888876544
No 307
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0022 Score=64.12 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCc--cccCCCCCc
Q 047503 550 EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK--SIGRLLNLQ 627 (920)
Q Consensus 550 ~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~ 627 (920)
++.+++.|.++++.... -++..+|+.|.||.|+-|.|+++ +.+..+.+|+.|.|+.|.|..|-+ .+.+|++|+
T Consensus 17 dl~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccH----HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 34556666666665422 25678999999999999999877 457789999999999999887643 467999999
Q ss_pred EEeecCCc-ccccc-----hhhcccccCCeEe
Q 047503 628 TLDLKHSL-VTQLP-----VEIKNLKKLRYLL 653 (920)
Q Consensus 628 ~L~L~~~~-l~~lp-----~~i~~l~~L~~L~ 653 (920)
+|.|..|. ...-+ ..+.-||+|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998873 22222 2366788888886
No 308
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.00 E-value=0.12 Score=50.32 Aligned_cols=22 Identities=55% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998774
No 309
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.99 E-value=0.19 Score=52.12 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=64.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccc-cC--CCC--ceEEEEeC----CCCCHHHHHH--------------HHHHHHh
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYV-MN--HFD--CRAWITVG----RECMKKDLLI--------------KMIKEFH 250 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~--~~~wv~v~----~~~~~~~~~~--------------~i~~~l~ 250 (920)
-.+++|+|..|+|||||++.+...... .+ .++ .+.++.-. ...++.+.+. ++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 358999999999999999998764211 11 111 12222111 0112333222 1111111
Q ss_pred hhccCCccccCCcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCC--CCCcEEEEEccchhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDN--KKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 323 (920)
.. ......+...+..+.+. .+...|..+.=++++|..-.. ..-..+...+... ..|..||++|.+...+..
T Consensus 105 l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IE--QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11 00011223444444433 456667778889999997543 2222333333321 235678888888765543
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.99 E-value=0.25 Score=47.72 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEE-------EeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWI-------TVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEE 266 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 266 (920)
-.+++|+|..|.|||||++.+.--.. ...+.+++ .+.+...... ..+.+.+... .....+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~-------~~~~LS~ 94 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYP-------WDDVLSG 94 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCcccc--ccHHHHhhcc-------CCCCCCH
Confidence 35899999999999999999976421 11121211 1222221110 1112222110 0122332
Q ss_pred HH-HHHHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 267 KD-LIIAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 267 ~~-l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
.+ ..-.+...+-.++=++++|+.-.. .....+...+... +..||++|.+.....
T Consensus 95 G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 33 223455555667778889987443 2223333333322 356788887766543
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.98 E-value=0.18 Score=49.69 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998774
No 312
>PRK04296 thymidine kinase; Provisional
Probab=94.97 E-value=0.031 Score=55.36 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVR 274 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (920)
.++.|+|..|.||||+|...... ...+-..++.+. ..++.......++.+++..... ..-....++...+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~-----~~~~~~~~~~~~~~ 73 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA-----IPVSSDTDIFELIE 73 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccc-----eEeCChHHHHHHHH
Confidence 57889999999999999988774 323333333332 1122222233344444321100 00122345555555
Q ss_pred HHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh
Q 047503 275 QYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA 319 (920)
Q Consensus 275 ~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 319 (920)
+ ..++.-+||+|.+.-. ++..++...+ ...|..||+|.++..
T Consensus 74 ~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 74 E-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred h-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5 2334458999999643 2122232222 245788999988754
No 313
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.5 Score=48.29 Aligned_cols=174 Identities=21% Similarity=0.249 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVN----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
+++-|.|..++.|.+...- .....+-|.++|++|.||+.||+.|+.... . -|.+||.+ +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----H
Confidence 4577999999888776532 233578999999999999999999998521 2 23455433 2
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-CCcEEEEEEcCCCc---------hhhhHH----HHhccC--
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-DKNYMIVLDDVWKI---------ELWGDV----EHALLD-- 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~---------~~~~~l----~~~l~~-- 304 (920)
+...++ +. .+.+...+.+.-+ +|+-+|.+|.++.. +.-..| ...+..
T Consensus 202 LvSKWm----GE-------------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 202 LVSKWM----GE-------------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred HHHHHh----cc-------------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 222221 11 1455666666554 58899999999753 112222 222222
Q ss_pred -CCCCcEEEEEccchhhhhhcccCCccceeecCCCCHHHHHH-HHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 305 -NKKGSRIMLTTRHKAVADFCKQSSFVQVHELEALPAVEAWR-LFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 305 -~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~-Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
...|.-|+-.|..+-+....-...+...+-+ ||++..|.. +|.-+.... .+.-.+..-+++.++..|.
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~t-----p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDT-----PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCC-----ccccchhhHHHHHhhcCCC
Confidence 2345555556665544332111111133333 466666654 454444221 1112233445556666654
No 314
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.99 Score=44.87 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=86.0
Q ss_pred cc-cchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 173 VV-GIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 173 ~~-Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++ |.+..+++|.+.+.-+ =.+++-+.++|++|.|||-||+.|+++ ..+-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 44 4677777777666432 125678899999999999999999985 34566777654 2
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-CCcEEEEEEcCCCc-------------hhhh---HHHHhcc
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-DKNYMIVLDDVWKI-------------ELWG---DVEHALL 303 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~-------------~~~~---~l~~~l~ 303 (920)
+....+-+= ......+.-.-+ .-+..|.+|.+++. +... ++...+.
T Consensus 217 lvqk~igeg-----------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 217 LVQKYIGEG-----------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred HHHHHhhhh-----------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 222221110 111122211112 34678888888653 1111 2333333
Q ss_pred C--CCCCcEEEEEccchhhhh--hcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 304 D--NKKGSRIMLTTRHKAVAD--FCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~~--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
. ..+.-+||+.|..-++.. .......+.-++.++-+++.-.++++-+.
T Consensus 280 gfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 280 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2 235567888776655543 12222234667888877777777776554
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.92 E-value=0.017 Score=53.05 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047503 197 VALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (920)
|.|.|..|+||||+|+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=94.90 E-value=0.24 Score=53.34 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+..+|.++|+.|+||||++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999988887764
No 317
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.18 Score=51.03 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047503 196 VVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999875
No 318
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.019 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..-|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999874
No 319
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.37 Score=55.87 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=87.9
Q ss_pred CccccchhhHHHHHHHH---hcC--------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWL---VNG--------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L---~~~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
.++.|.+..++.+.+.+ ... -...+.+.++|++|.|||.||+.+++. ...+|- .+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH----
Confidence 34556666666554443 221 134678999999999999999999993 334442 22111
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhHHHHhccCCC
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-------------LWGDVEHALLDNK 306 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~ 306 (920)
+++...+ ..+...+...+...-+..+..|.+|.++..- ...++...+....
T Consensus 311 ~l~sk~v----------------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e 374 (494)
T COG0464 311 ELLSKWV----------------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE 374 (494)
T ss_pred HHhcccc----------------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC
Confidence 1111100 1112333344444445788999999996531 1223333333223
Q ss_pred --CCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 307 --KGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 307 --~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
.+..||-||-...... .. ........+.+.+-+.++..+.|..+...
T Consensus 375 ~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 375 KAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 2333455554443322 11 11233468889999999999999998753
No 320
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.85 E-value=0.17 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 321
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.83 E-value=0.17 Score=51.86 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=38.5
Q ss_pred CCcCCHHHHH-HHHHHHhcCCcEEEEEEcCCCc-h--hhhHHHHhccC--CCCCcEEEEEccchhhhhhc
Q 047503 261 MNNMEEKDLI-IAVRQYLHDKNYMIVLDDVWKI-E--LWGDVEHALLD--NKKGSRIMLTTRHKAVADFC 324 (920)
Q Consensus 261 ~~~~~~~~l~-~~l~~~L~~kr~LlVlDdv~~~-~--~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~ 324 (920)
+.+.+..+.+ -.+...|.++.=+++||.-=+. + .--++...+.. ...|..||+++-+-..|...
T Consensus 136 ~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 136 VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 4555555554 4677788888888999986433 1 11112222221 23467799999998777544
No 322
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.80 E-value=0.086 Score=53.81 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhccChHHHHHHHHHHHHhhhhhHHHH
Q 047503 4 AAVNLVIETLGSLLVQEINLLGSTKQEVQSIKNELESIRSFLKDADAREAAEEEEGESNEGVKTWVKQVREEAFRIEDVI 83 (920)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~L~~i~~~l~~a~~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~l 83 (920)
+-|..++++|-++.......+.-++..++-++.+++.+|.||+.....+.... .....+..++-+.||++|.++
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh------~~~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKH------DTNEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhh------hhhhhHHHHHHHHHhheeeee
Confidence 45677888888887777777888999999999999999999998854311122 347899999999999999999
Q ss_pred HHHH
Q 047503 84 DEYI 87 (920)
Q Consensus 84 d~~~ 87 (920)
|.+.
T Consensus 370 DaCi 373 (402)
T PF12061_consen 370 DACI 373 (402)
T ss_pred ehhh
Confidence 9874
No 323
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.18 Score=55.04 Aligned_cols=89 Identities=25% Similarity=0.224 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC--HHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM--KKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
-.++.++|+.|+||||++.++......+.....+..++ .+.+. ..+.++...+.++.... .. .+..++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~-----~~--~~~~~l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH-----AV--KDGGDLQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceE-----ec--CCcccHHH
Confidence 46999999999999999999987422121123455555 33332 33344444444332211 01 11123333
Q ss_pred HHHHHhcCCcEEEEEEcCCCc
Q 047503 272 AVRQYLHDKNYMIVLDDVWKI 292 (920)
Q Consensus 272 ~l~~~L~~kr~LlVlDdv~~~ 292 (920)
.+. .+.++ -+|++|.....
T Consensus 209 ~l~-~l~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 209 ALA-ELRNK-HMVLIDTIGMS 227 (374)
T ss_pred HHH-HhcCC-CEEEEcCCCCC
Confidence 333 33444 55669998543
No 324
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.77 E-value=0.014 Score=34.78 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=6.8
Q ss_pred CceeeecCCCccccCcc
Q 047503 603 LHYLSVRNTKVKVLPKS 619 (920)
Q Consensus 603 L~~L~L~~~~i~~lp~~ 619 (920)
|++|+|++|.++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 33444444443333333
No 325
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.76 E-value=0.021 Score=56.98 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccc-CCCC---ceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVM-NHFD---CRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~---~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
||+|.|.+|+||||+|+.+... .. .... ....++.. .+....-.... -...........+...+.+.+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d-~~~~~~~~~~~---~~~~~~~~~~~~p~a~d~~~l~~ 74 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLD-DFYDDYHLRDR---KGRGENRYNFDHPDAFDFDLLKE 74 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGG-GGBHHHHHHHH---HHHCTTTSSTTSGGGBSHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeec-ccccccchhhH---hhccccccCCCCccccCHHHHHH
Confidence 7999999999999999999874 22 1222 13333322 22221111111 11110000111245567778888
Q ss_pred HHHHHhcCCcEEE
Q 047503 272 AVRQYLHDKNYMI 284 (920)
Q Consensus 272 ~l~~~L~~kr~Ll 284 (920)
.+....+++..-+
T Consensus 75 ~l~~L~~g~~i~~ 87 (194)
T PF00485_consen 75 DLKALKNGGSIEI 87 (194)
T ss_dssp HHHHHHTTSCEEE
T ss_pred HHHHHhCCCcccc
Confidence 8877666666433
No 326
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.76 E-value=0.071 Score=56.91 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+..++|+|+.|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999995
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.76 E-value=0.04 Score=50.39 Aligned_cols=40 Identities=33% Similarity=0.288 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++.+++-+.|...-+.-.+|.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455555555543223469999999999999999999885
No 328
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.76 E-value=1.4 Score=46.70 Aligned_cols=144 Identities=10% Similarity=0.102 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc--------cccCCCCceEEEEe-CCCCCHHHHHHHHHHHHhh
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQ--------YVMNHFDCRAWITV-GRECMKKDLLIKMIKEFHQ 251 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--------~~~~~F~~~~wv~v-~~~~~~~~~~~~i~~~l~~ 251 (920)
+.+...+..+. -.++..++|..|.||+++|..+.+.. ....|=+...++.. +......+ ++++++.+..
T Consensus 6 ~~l~~~i~~~~-l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~-Ir~l~~~~~~ 83 (299)
T PRK07132 6 KFLDNSATQNK-ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSE-FLSAINKLYF 83 (299)
T ss_pred HHHHHHHHhCC-CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHH-HHHHHHHhcc
Confidence 33444443332 35788899999999999998876531 00111112333321 11112111 1222222211
Q ss_pred hccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccc-hhhhhhcccCC
Q 047503 252 LTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRH-KAVADFCKQSS 328 (920)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~ 328 (920)
. ..-.+++=++|+|+++... ....+...+-....++.+|++|.+ ..+.....+.
T Consensus 84 ~----------------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SR- 140 (299)
T PRK07132 84 S----------------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSR- 140 (299)
T ss_pred C----------------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhC-
Confidence 1 0001477788999987663 466777777777777777765543 3333222221
Q ss_pred ccceeecCCCCHHHHHHHHHHH
Q 047503 329 FVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 329 ~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
...+++.++++++..+.+...
T Consensus 141 -c~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 141 -CQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred -eEEEECCCCCHHHHHHHHHHc
Confidence 278999999999998777654
No 329
>PTZ00035 Rad51 protein; Provisional
Probab=94.73 E-value=0.22 Score=54.07 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM----NHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.+-+.|..+=+.-.++.|+|..|+|||||+..++-..... ..=..++||+....|+..+ +.++++.++
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 3444444443446899999999999999999886432211 1223577999888888776 344455543
No 330
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.015 Score=34.59 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=17.1
Q ss_pred CCcEEeecCCcccccchhhccc
Q 047503 625 NLQTLDLKHSLVTQLPVEIKNL 646 (920)
Q Consensus 625 ~L~~L~L~~~~l~~lp~~i~~l 646 (920)
+|++|||++|.++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788999999888888776543
No 331
>PTZ00301 uridine kinase; Provisional
Probab=94.72 E-value=0.024 Score=56.84 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999988763
No 332
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.055 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999999887663
No 333
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.72 E-value=0.13 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++|+|..|.|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999763
No 334
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.034 Score=51.46 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhh
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQL 252 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (920)
+|.|.|.+|+||||+|+.+.++. .-.| .+...++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~--gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL--GLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh--CCce-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999998852 1111 13446788888776543
No 335
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.69 E-value=0.17 Score=57.10 Aligned_cols=130 Identities=23% Similarity=0.379 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHH-HHHHHhcCccccCCCCceEEEEeCCCCC--HHHHHHHHHHHHhhhccCC
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTT-LAGKLFNNQYVMNHFDCRAWITVGRECM--KKDLLIKMIKEFHQLTGQS 256 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~ 256 (920)
.++|+..+.. ..||.|||..|.|||| |||.+|.+- |...--|-+.++-. ...+.+.+.++++...+..
T Consensus 361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 3445554444 4699999999999998 566677652 21111344444433 3456777777776655443
Q ss_pred ccc-----cCC-------cCCHHHHHHHHHHHhcC----CcEEEEEEcCCCchh-----hhHHHHhccCCCCCcEEEEEc
Q 047503 257 ALG-----EMN-------NMEEKDLIIAVRQYLHD----KNYMIVLDDVWKIEL-----WGDVEHALLDNKKGSRIMLTT 315 (920)
Q Consensus 257 ~~~-----~~~-------~~~~~~l~~~l~~~L~~----kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~iivTt 315 (920)
..- ++. -++.. ..|++.|++ |=-.||+|...+... ++-++..+. ....-|+||||
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtS 507 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTS 507 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEee
Confidence 321 111 11211 234555544 445899999976532 222233332 33467899999
Q ss_pred cchhhhh
Q 047503 316 RHKAVAD 322 (920)
Q Consensus 316 R~~~v~~ 322 (920)
-.-+...
T Consensus 508 ATm~a~k 514 (1042)
T KOG0924|consen 508 ATMDAQK 514 (1042)
T ss_pred ccccHHH
Confidence 7655443
No 336
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.65 E-value=0.028 Score=56.70 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+|+|+|.+|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999874
No 337
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.65 E-value=0.026 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999874
No 338
>PRK08233 hypothetical protein; Provisional
Probab=94.63 E-value=0.026 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 339
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.62 E-value=0.22 Score=55.75 Aligned_cols=25 Identities=44% Similarity=0.529 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+..+|.++|..|+||||.|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998874
No 340
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.62 E-value=0.035 Score=61.88 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++||++.++.+...+..+. -|.|.|.+|+|||++|+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 468899999999999988765 6789999999999999999874
No 341
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.57 E-value=0.23 Score=49.48 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+++.|.|.+|.||||+++.+.+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH
Confidence 68889999999999999998764
No 342
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.098 Score=50.07 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHH-HHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKD-LIIAV 273 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~l 273 (920)
.+++|+|..|.|||||++.+... .......+++.-....... .......+.-. ...+..+ ..-.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~---~~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~---------~qlS~G~~~r~~l 91 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL---LKPTSGEILIDGKDIAKLP--LEELRRRIGYV---------PQLSGGQRQRVAL 91 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCccEEEECCEEcccCC--HHHHHhceEEE---------eeCCHHHHHHHHH
Confidence 69999999999999999999874 2234455554322111100 00111111100 0022222 22335
Q ss_pred HHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCC-CCCcEEEEEccchhhhhh
Q 047503 274 RQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDN-KKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 323 (920)
...+...+-++++|+.-.. .....+...+... ..+..++++|.+......
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5555566788999998543 2333333333321 124678888877665543
No 343
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.54 E-value=0.27 Score=57.65 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999854
No 344
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.51 E-value=0.32 Score=47.87 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998763
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.50 E-value=0.28 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++.|+|..|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999864
No 346
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.50 E-value=0.027 Score=45.25 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998774
No 347
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.50 E-value=0.26 Score=54.62 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+|.++|..|+||||+|.+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999888653
No 348
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.031 Score=55.27 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=23.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+.+|+|.|.+|+||||+|+++++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999885
No 349
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.47 E-value=0.11 Score=57.71 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCC-----HHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNME-----EKDL 269 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l 269 (920)
..++|+|..|+|||||++.+.... .....++|+.-...-++.++....+....... -..-...+... ....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rt-I~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKA-VAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCe-EEEEEcCCCCHHHHHHHHHH
Confidence 589999999999999999987642 22334555543333455554444444331110 00000000100 1112
Q ss_pred HHHHHHHh--cCCcEEEEEEcCC
Q 047503 270 IIAVRQYL--HDKNYMIVLDDVW 290 (920)
Q Consensus 270 ~~~l~~~L--~~kr~LlVlDdv~ 290 (920)
.-.+.+++ +++..|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 22344444 4789999999984
No 350
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.46 E-value=0.094 Score=57.29 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=49.3
Q ss_pred CccccchhhHHHHHHHHhcC------------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC---CceEEEEeCC-
Q 047503 171 DEVVGIESARDILIGWLVNG------------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF---DCRAWITVGR- 234 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~- 234 (920)
..++|.++.++.+.-.+... +-..+-|.++|++|+|||++|+.+... ....| +..-++..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 46889888888886666531 112467899999999999999999874 33333 2222222111
Q ss_pred CCCHHHHHHHHHHHH
Q 047503 235 ECMKKDLLIKMIKEF 249 (920)
Q Consensus 235 ~~~~~~~~~~i~~~l 249 (920)
..+...+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225666666666554
No 351
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.45 E-value=2.6 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..++.|+|+.|.|||||.+.+.-
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47999999999999999998854
No 352
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.41 E-value=0.35 Score=51.14 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-.++.|.|.+|+||||++.++.... ...+=..++|++... ...++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 4588899999999999999987652 122234688988755 4556666665544
No 353
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.35 E-value=0.11 Score=59.34 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
.-+++.+.|++|+||||||+-++.+. .| .++=|.+|+.-+...+-..|...+.-.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~-------------------- 379 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNH-------------------- 379 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhc--------------------
Confidence 46899999999999999999998752 22 356667777665555444443333221
Q ss_pred HHHHh--cCCcEEEEEEcCCCc
Q 047503 273 VRQYL--HDKNYMIVLDDVWKI 292 (920)
Q Consensus 273 l~~~L--~~kr~LlVlDdv~~~ 292 (920)
..+ .+++.-+|+|.++..
T Consensus 380 --s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 380 --SVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred --cccccCCCcceEEEecccCC
Confidence 112 156777899999765
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.32 E-value=0.26 Score=51.75 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH--HHHHHHHHHHhhhccCCccccCCcCCHHH-H
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK--DLLIKMIKEFHQLTGQSALGEMNNMEEKD-L 269 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l 269 (920)
+.+++.++|.+|+||||++..++.. ....-..+.+++. +.+... +-+....+..+...-. .....+... .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~-D~~r~~a~~ql~~~~~~~~i~~~~----~~~~~dp~~~~ 143 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAG-DTFRAAAIEQLEEWAKRLGVDVIK----QKEGADPAAVA 143 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeC-CCCCHHHHHHHHHHHHhCCeEEEe----CCCCCCHHHHH
Confidence 4689999999999999999888764 2222234555554 334332 3333344443321100 001112222 2
Q ss_pred HHHHHHHhcCCcEEEEEEcCCC
Q 047503 270 IIAVRQYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 270 ~~~l~~~L~~kr~LlVlDdv~~ 291 (920)
...+.....+..=++++|-.-.
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCC
Confidence 3344444444455788898744
No 355
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.31 E-value=0.05 Score=51.22 Aligned_cols=36 Identities=31% Similarity=0.220 Sum_probs=27.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT 231 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (920)
..||.|.|.+|+||||||+.+.+. ....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999884 444444566654
No 356
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.27 Score=51.23 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=57.9
Q ss_pred cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH-HhhhccCCccccCCc-CCH
Q 047503 189 NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKE-FHQLTGQSALGEMNN-MEE 266 (920)
Q Consensus 189 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~-~~~ 266 (920)
.+=+.-+++=|+|+.|.||||+|.+++-. .+..-..++||+.-+.+++..+ +.+... +.... -....+ ...
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~----v~~~~~~e~q 127 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERA-KQLGVDLLDNLL----VSQPDTGEQQ 127 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHH-HHHHHhhhccee----EecCCCHHHH
Confidence 43345689999999999999999997664 4444558999999999988764 233333 11110 001111 112
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCC
Q 047503 267 KDLIIAVRQYLHDKNYMIVLDDVW 290 (920)
Q Consensus 267 ~~l~~~l~~~L~~kr~LlVlDdv~ 290 (920)
.+++..+......+--|+|+|.+-
T Consensus 128 ~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 128 LEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHhccCCCCEEEEecCc
Confidence 223334444433445799999884
No 357
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.27 E-value=0.3 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+.-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999865
No 358
>PRK06762 hypothetical protein; Provisional
Probab=94.27 E-value=0.035 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998874
No 359
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.46 Score=54.54 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=95.9
Q ss_pred CCCCccccchhhHHH---HHHHHhcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 047503 168 IEDDEVVGIESARDI---LIGWLVNGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM 237 (920)
Q Consensus 168 ~~~~~~~Gr~~~~~~---l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (920)
+.-.++-|.|+.+++ +++.|.++. .=++-|.++|++|.|||.||+.+.....+ .| .+.|.+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccch--
Confidence 334577898876655 566666542 23577889999999999999999986333 22 122211
Q ss_pred HHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hhhhHHHHhcc--
Q 047503 238 KKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------ELWGDVEHALL-- 303 (920)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~~~~l~~~l~-- 303 (920)
+.++.+- ........+.+.+..++-++.|++|.++.. +.+++....+.
T Consensus 218 ------~FVemfV------------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE 279 (596)
T COG0465 218 ------DFVEMFV------------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 279 (596)
T ss_pred ------hhhhhhc------------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh
Confidence 0011110 111123334444555566799999988642 34444443332
Q ss_pred --CCC--CCcEEEEEccchhhhh--hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCC
Q 047503 304 --DNK--KGSRIMLTTRHKAVAD--FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGG 377 (920)
Q Consensus 304 --~~~--~gs~iivTtR~~~v~~--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~g 377 (920)
... .|-.|+..|-..+|.. ......++..+.++.-+-..-.++++-++....- ...-++. .|++.+-|
T Consensus 280 mDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l--~~~Vdl~----~iAr~tpG 353 (596)
T COG0465 280 MDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL--AEDVDLK----KIARGTPG 353 (596)
T ss_pred hccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC--CCcCCHH----HHhhhCCC
Confidence 222 2334444555555542 2334444566666666656666666655433211 1111222 27777776
Q ss_pred chH
Q 047503 378 LPL 380 (920)
Q Consensus 378 lPl 380 (920)
.--
T Consensus 354 fsG 356 (596)
T COG0465 354 FSG 356 (596)
T ss_pred ccc
Confidence 643
No 360
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.24 E-value=0.098 Score=57.18 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=51.5
Q ss_pred CCccccchhhHHHHHHHHhcC------------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC---CceEEEEeC-
Q 047503 170 DDEVVGIESARDILIGWLVNG------------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF---DCRAWITVG- 233 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~- 233 (920)
+..++|.++.++.+..++... +...+.|.++|+.|+|||+||+.+... ....| +..-|...+
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 356899999999998887541 112467899999999999999998774 33333 322222211
Q ss_pred CCCCHHHHHHHHHHHHh
Q 047503 234 RECMKKDLLIKMIKEFH 250 (920)
Q Consensus 234 ~~~~~~~~~~~i~~~l~ 250 (920)
...+....++++.....
T Consensus 92 vG~d~e~~ir~L~~~A~ 108 (443)
T PRK05201 92 VGRDVESIIRDLVEIAV 108 (443)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 12356677777766653
No 361
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.22 E-value=0.3 Score=52.44 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999998653
No 362
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.22 E-value=0.14 Score=51.38 Aligned_cols=37 Identities=30% Similarity=0.541 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE 235 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 235 (920)
.-++|+|.+|+|||+|++++.++. .-+.++++-+++.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer 52 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGER 52 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESEC
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeecccc
Confidence 467899999999999999998863 2344578888765
No 363
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.5 Score=52.02 Aligned_cols=89 Identities=21% Similarity=0.126 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccc--CCCCceEEEEeCCCCCHHHH--HHHHHHHHhhhccCCccccCCcCCHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVM--NHFDCRAWITVGRECMKKDL--LIKMIKEFHQLTGQSALGEMNNMEEKD 268 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~ 268 (920)
...+|.++|..|+||||.+.+++...... .+-..+.-|+. +++..... +....+.++.+ .. ...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvp----v~---~~~~~~~ 244 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIP----VK---AIESFKD 244 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcc----eE---eeCcHHH
Confidence 35799999999999999999887642221 11123444554 34443322 33333333221 11 1112344
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCC
Q 047503 269 LIIAVRQYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 269 l~~~l~~~L~~kr~LlVlDdv~~ 291 (920)
+...+.+. .+.=+|++|....
T Consensus 245 l~~~L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 245 LKEEITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHHHHHh--CCCCEEEEcCCCC
Confidence 44444443 3456888999854
No 364
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.19 E-value=0.061 Score=53.96 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHhcCCcEEEEEEcCCCc---hhhh-HHHHhccCCC-C-CcEEEEEccchhhhh
Q 047503 272 AVRQYLHDKNYMIVLDDVWKI---ELWG-DVEHALLDNK-K-GSRIMLTTRHKAVAD 322 (920)
Q Consensus 272 ~l~~~L~~kr~LlVlDdv~~~---~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~ 322 (920)
.+...+..++-++++|+.-.. ...+ .+...+.... . |..||++|.+.+...
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 345566678889999998543 2233 4444443322 2 566888888877654
No 365
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.17 E-value=0.3 Score=50.35 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (920)
|-+.|..+=+.-+++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 334444443456899999999999999999875531 2 2345788988755 45555554
No 366
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.12 E-value=0.32 Score=51.39 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=30.4
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHH
Q 047503 175 GIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKL 214 (920)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v 214 (920)
+|..+-.--++.|..++ ...|.+.|.+|.|||.||-..
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 35555555677787776 899999999999999999754
No 367
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.08 E-value=0.63 Score=48.06 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 369999999999999999998753
No 368
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.07 E-value=0.35 Score=58.83 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998854
No 369
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.07 E-value=0.17 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 370
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.06 E-value=0.29 Score=50.22 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE 235 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 235 (920)
.-.++.|.|.+|.||||||.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999999876531 1 22356888887443
No 371
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.04 E-value=0.086 Score=47.20 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=33.6
Q ss_pred CccccchhhHHHHH----HHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILI----GWLVNG-RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~----~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|-.-..+.|+ +.+.+. ++++-|++.+|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35666554444444 444433 456889999999999999999888775
No 372
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.03 E-value=0.16 Score=52.47 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccc--cCCCCceEEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCCH-----
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYV--MNHFDCRAWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNMEE----- 266 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----- 266 (920)
.-++|.|..|+|||+|+.++.++... +.+-+.++++-+++... ..++..++.+.=.....--.....++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999998876331 23347788888887643 34444443332000000000000011111
Q ss_pred HHHHHHHHHHhc---CCcEEEEEEcCCC
Q 047503 267 KDLIIAVRQYLH---DKNYMIVLDDVWK 291 (920)
Q Consensus 267 ~~l~~~l~~~L~---~kr~LlVlDdv~~ 291 (920)
....-.+.++++ +++.|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112233455553 6889999999843
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.03 E-value=0.39 Score=48.06 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=30.4
Q ss_pred cCCcEEEEEEcCCCc---hh----hhHHHHhccCCCCCcEEEEEccchhhhhhccc
Q 047503 278 HDKNYMIVLDDVWKI---EL----WGDVEHALLDNKKGSRIMLTTRHKAVADFCKQ 326 (920)
Q Consensus 278 ~~kr~LlVlDdv~~~---~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 326 (920)
..++-|+++|..... .+ ...+...+.. .|+.+|++|-..+.+.....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 357889999998432 11 1223333332 27899999999988876543
No 374
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.56 Score=48.36 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=35.0
Q ss_pred cCCHHHHH-HHHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhhh
Q 047503 263 NMEEKDLI-IAVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 263 ~~~~~~l~-~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 323 (920)
..+..+.+ -.+...|-.++-++++|+.-.. ...+.+...+.....|..||++|.+......
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 34433332 3455666778889999998543 2333444444332226678888877765543
No 375
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.02 E-value=0.53 Score=49.25 Aligned_cols=93 Identities=22% Similarity=0.210 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
+..+|.|+|..|+|||||+..+.+. ..... .++.+ ..+..+..+. +.+...+...-+-..+..-..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~Da--~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVNDA--ARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHHH--HHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 5899999999999999999998874 33333 23332 2222222221 12233222110000011112334445555
Q ss_pred HHHHhcCCcEEEEEEcCCC
Q 047503 273 VRQYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 273 l~~~L~~kr~LlVlDdv~~ 291 (920)
+...-....=++|++++.+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444446788999864
No 376
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.24 Score=54.47 Aligned_cols=24 Identities=50% Similarity=0.592 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++.++|.+|+||||+|.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 377
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.46 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..|+|+|.+|+|||||-+.+.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999854
No 378
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.86 E-value=0.17 Score=61.20 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899999999988777643323457889999999999999999875
No 379
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.6 Score=51.87 Aligned_cols=23 Identities=48% Similarity=0.658 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++++|..|+||||++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998765
No 380
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.82 E-value=0.39 Score=49.58 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=74.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEE-EEeCCCCCHHHHHHHHHHHHh
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAW-ITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~~i~~~l~ 250 (920)
.|+|-.. ..+++.++......-+.+.|+|+.|+|||+-++++++. ...+| +..+..++...++..+.....
T Consensus 73 ~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s-------~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 73 DFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS-------NPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred cccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc-------CccceeecCChhhHHHHHHHHHHHHHh
Confidence 4444433 33455555544333458899999999999999999884 12344 456666777666666665554
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhcc
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALL 303 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~ 303 (920)
.. ...........+...+.+..-+|++|..+.. +.++.++....
T Consensus 145 ~~---------~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 145 GA---------TDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cc---------cchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 43 1223455666677777888889999998775 45666655433
No 381
>PRK03839 putative kinase; Provisional
Probab=93.81 E-value=0.043 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 382
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.078 Score=48.25 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..-|.|.|-+|+||||||..+..- . ..-|+++|+-..-..+.. . -+..-++.-.+.+.+.+.|
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~----~---~~~~i~isd~vkEn~l~~--------g--yDE~y~c~i~DEdkv~D~L 69 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK----T---GLEYIEISDLVKENNLYE--------G--YDEEYKCHILDEDKVLDEL 69 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH----h---CCceEehhhHHhhhcchh--------c--ccccccCccccHHHHHHHH
Confidence 456889999999999999999863 1 234677664322221111 1 1111233445678888888
Q ss_pred HHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcc
Q 047503 274 RQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCK 325 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 325 (920)
...+.+.-+.+ | |. -...||...-.--+++||-+........
T Consensus 70 e~~m~~Gg~IV--D-------yH-gCd~FperwfdlVvVLr~~~s~LY~RL~ 111 (176)
T KOG3347|consen 70 EPLMIEGGNIV--D-------YH-GCDFFPERWFDLVVVLRTPNSVLYDRLK 111 (176)
T ss_pred HHHHhcCCcEE--e-------ec-ccCccchhheeEEEEEecCchHHHHHHH
Confidence 88776544322 2 11 1123333322334666666655554443
No 383
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.16 Score=49.09 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.|.+.|.+|+||||+|+++..-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46788999999999999998773
No 384
>PRK04328 hypothetical protein; Provisional
Probab=93.77 E-value=0.2 Score=51.99 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE 235 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 235 (920)
|-+.|..+=+.-+++.|.|.+|.|||+||.++... ....-..++||+..+.
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 33334343234689999999999999999987653 2223456888887653
No 385
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.77 E-value=0.27 Score=57.07 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=40.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 170 DDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 357899999999999888765444567889999999999999999875
No 386
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.76 E-value=0.046 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|.|+|.+|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998763
No 387
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.75 E-value=0.18 Score=52.72 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR 234 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 234 (920)
+.-+++.|.|.+|+|||++|.++.... . ..=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecC
Confidence 346899999999999999999975531 1 2234688888764
No 388
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.68 E-value=0.55 Score=48.91 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||.+.++--
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999988653
No 389
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.68 E-value=0.3 Score=54.56 Aligned_cols=97 Identities=15% Similarity=0.328 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcCccc-----cCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCc-cccCCcCCHH
Q 047503 195 SVVALVGQGGIGKTTLA-GKLFNNQYV-----MNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSA-LGEMNNMEEK 267 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~ 267 (920)
.-++|.|..|+|||+|| -.+.|+..+ .++-+.++++-+++..+.-.-+.+.+++-+.....-. ....++....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46789999999999997 556665322 1344568888888765433223333333221100000 0000110111
Q ss_pred H-----HHHHHHHHh--cCCcEEEEEEcCCC
Q 047503 268 D-----LIIAVRQYL--HDKNYMIVLDDVWK 291 (920)
Q Consensus 268 ~-----l~~~l~~~L--~~kr~LlVlDdv~~ 291 (920)
+ ..-.+-+++ +++..|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 122233444 47899999999943
No 390
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.67 E-value=0.056 Score=54.39 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=25.0
Q ss_pred HhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 187 LVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 187 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++....+.|.|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3344446789999999999999999998763
No 391
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.65 E-value=0.32 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 392
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.63 E-value=0.33 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
++++|+|..|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998864
No 393
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.63 E-value=0.44 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998763
No 394
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.63 E-value=0.2 Score=54.98 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR 234 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 234 (920)
.+-+.|..+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 333444333223579999999999999999998764 323334678887644
No 395
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.62 E-value=0.082 Score=56.20 Aligned_cols=47 Identities=28% Similarity=0.514 Sum_probs=41.0
Q ss_pred CCccccchhhHHHHHHHHhcC----CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 170 DDEVVGIESARDILIGWLVNG----RKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+..++|.++.+++|++.+... +..-+|+.++|+-|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999753 34578999999999999999998866
No 396
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.62 E-value=0.92 Score=45.66 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 397
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.61 E-value=0.19 Score=50.36 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999988764
No 398
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.60 E-value=0.072 Score=49.64 Aligned_cols=39 Identities=31% Similarity=0.349 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR 234 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 234 (920)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999862 234455555666544
No 399
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.59 E-value=0.1 Score=48.69 Aligned_cols=42 Identities=36% Similarity=0.370 Sum_probs=29.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 047503 197 VALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
|.|+|..|+|||+||+.+++. .. ....-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEecccccccccee
Confidence 679999999999999999874 21 1233466777777766544
No 400
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.57 E-value=0.7 Score=45.53 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=31.8
Q ss_pred HHHHhcC--CcEEEEEEcCCCchh-------hhHHHHhccCCCCCcEEEEEccchhhhhhccc
Q 047503 273 VRQYLHD--KNYMIVLDDVWKIEL-------WGDVEHALLDNKKGSRIMLTTRHKAVADFCKQ 326 (920)
Q Consensus 273 l~~~L~~--kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 326 (920)
+...+.. ++-|+++|..-..-+ ...+...+.. ..++.+|++|...++...+..
T Consensus 69 l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 69 TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLADE 130 (185)
T ss_pred HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhhc
Confidence 4444443 789999999854311 1122222222 236789999999887766543
No 401
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.56 E-value=0.039 Score=48.85 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047503 197 VALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (920)
|.|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998775
No 402
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.55 E-value=0.32 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.54 E-value=0.17 Score=53.00 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=59.1
Q ss_pred ccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhc
Q 047503 174 VGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLT 253 (920)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 253 (920)
.|...+..+.+..+.... ..+|.|.|..|.||||+++.+.+. +...-..++ ++.+..... +.. +.|+.
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~--i~~~~~~ii--tiEdp~E~~--~~~-~~q~~--- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNII--TVEDPVEYQ--IPG-INQVQ--- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEE--EECCCceec--CCC-ceEEE---
Confidence 455554444444444433 358999999999999999987663 221111222 332221110 000 00000
Q ss_pred cCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHh
Q 047503 254 GQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHA 301 (920)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~ 301 (920)
+...........++..|+..+=.|+++++.+.+....+..+
T Consensus 130 -------v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 130 -------VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred -------eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 00000123456777888888889999999988754444333
No 404
>PRK04040 adenylate kinase; Provisional
Probab=93.51 E-value=0.056 Score=53.29 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999998774
No 405
>PRK13409 putative ATPase RIL; Provisional
Probab=93.49 E-value=0.4 Score=56.51 Aligned_cols=124 Identities=20% Similarity=0.201 Sum_probs=64.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEE-----EeCCC------CCHHHHHH-------------HHHHHHh
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWI-----TVGRE------CMKKDLLI-------------KMIKEFH 250 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-----~v~~~------~~~~~~~~-------------~i~~~l~ 250 (920)
.+++|+|..|+|||||++.++-... ...+.+++ .+.+. .++.+.+. ++++.++
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 5999999999999999999976311 11111111 11221 12222221 2222221
Q ss_pred hhccCCccccCCcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccC--CCCCcEEEEEccchhhhhh
Q 047503 251 QLTGQSALGEMNNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLD--NKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~ 323 (920)
.. ......+.+.+..+.+. .+...|..++-+++||.--.. ..-..+...+.. ...|..||++|.+...+..
T Consensus 443 l~--~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 443 LE--RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred CH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 00112234555555544 466677788889999987443 222223333322 1235667888877765543
No 406
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.48 E-value=0.046 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 407
>PRK00625 shikimate kinase; Provisional
Probab=93.46 E-value=0.052 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|+|+.|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999774
No 408
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.056 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 579999999999999999999885
No 409
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.085 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.++.|.|++|+|||||++.++++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999986
No 410
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.41 E-value=0.43 Score=46.52 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=62.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHHHHHHHHhhh-ccCCccccCCc-----C
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE---CMKKDLLIKMIKEFHQL-TGQSALGEMNN-----M 264 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~i~~~l~~~-~~~~~~~~~~~-----~ 264 (920)
...|.|+|..|-||||.|.-+.-. ..++=..+..|..-+. ..-...+..+ ..+... .+....-...+ .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 468999999999999999776542 2222122333332221 1222222211 000000 00000000000 0
Q ss_pred CHHHHHHHHHHHhcCCc-EEEEEEcCCCc-----hhhhHHHHhccCCCCCcEEEEEccch
Q 047503 265 EEKDLIIAVRQYLHDKN-YMIVLDDVWKI-----ELWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 265 ~~~~l~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
...+.....++.+...+ =|+|||.+-.. -..+++...+.....+.-||+|-|..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223445555665555 49999998432 34566777776667778999999976
No 411
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.40 E-value=0.0035 Score=61.10 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=73.3
Q ss_pred hccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEe
Q 047503 574 VAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLL 653 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 653 (920)
+..++..++||++.|.+..+-..++.+..|.-|+++.+.+..+|...+.+..+.++++.+|..+..|.+.++++.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 45678889999999988877777888888999999999999999999988999999998888999999999999999998
Q ss_pred eccc
Q 047503 654 VYHS 657 (920)
Q Consensus 654 l~~~ 657 (920)
+.++
T Consensus 118 ~k~~ 121 (326)
T KOG0473|consen 118 QKKT 121 (326)
T ss_pred hccC
Confidence 8775
No 412
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.40 E-value=0.092 Score=59.71 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++.+....++..+|+|.|..|+||||||+.+...
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 34445445456899999999999999999999763
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.39 E-value=0.2 Score=56.51 Aligned_cols=24 Identities=50% Similarity=0.638 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+|+|+|.+|+||||++.++...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999888763
No 414
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.39 E-value=0.12 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999998875
No 415
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.37 E-value=0.11 Score=53.33 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=61.8
Q ss_pred ccccchhhHHHHHHHHh----cC-CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 047503 172 EVVGIESARDILIGWLV----NG-RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMI 246 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~----~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (920)
.++|---.++.|+..+. ++ +.++-|++.+|..|.||.-.|+.++++....+-= ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 45665555555555554 33 3468899999999999999999998863221110 00011111
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHhcC-CcEEEEEEcCCCc--hhhhHHHHhc
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHD-KNYMIVLDDVWKI--ELWGDVEHAL 302 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~--~~~~~l~~~l 302 (920)
....-+ .+..++.. .+++..+++..++. +|-|+|+|+++.. .-.+.+...+
T Consensus 149 at~hFP----~~~~ie~Y-k~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfL 202 (344)
T KOG2170|consen 149 ATLHFP----HASKIEDY-KEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFL 202 (344)
T ss_pred hhccCC----ChHHHHHH-HHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhh
Confidence 111110 00001111 24566666666654 8999999999876 2344444433
No 416
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.34 E-value=0.049 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|.|..|+||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 417
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.34 E-value=0.26 Score=55.29 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCCH------H
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNMEE------K 267 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------~ 267 (920)
.-++|+|.+|+|||||+.++.+... +.+-+.++++-+++... ..++..++...=.... .-.-....+.+. .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~r-svvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDK-TVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcce-eEEEecCCCCCHHHHHHHH
Confidence 4789999999999999999887632 23567888887766532 3344443332110000 000000011111 1
Q ss_pred HHHHHHHHHh---cCCcEEEEEEcCC
Q 047503 268 DLIIAVRQYL---HDKNYMIVLDDVW 290 (920)
Q Consensus 268 ~l~~~l~~~L---~~kr~LlVlDdv~ 290 (920)
...-.+.+++ .++..|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2233455565 3789999999993
No 418
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.34 E-value=0.21 Score=48.25 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 173 VVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++|.+..+.++++.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888988888753222345569999999999999999984
No 419
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.32 E-value=0.23 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047503 197 VALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.+.|+.|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998864
No 420
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.31 E-value=0.061 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++.|+|+.|+||||||+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 421
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.31 E-value=0.086 Score=52.48 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCC--------CceEEEEeCCC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHF--------DCRAWITVGRE 235 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~v~~~ 235 (920)
.++.|+|.+|+||||++.++.........| ..++|++...+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999999887653222222 36888887655
No 422
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.31 E-value=0.28 Score=52.16 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
.-+++-|+|..|+||||||..++.. ....-..++||+....+++. .++.++.....-.-..+ ...++....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P--~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQP--DTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE---SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecC--CcHHHHHHH
Confidence 3579999999999999999998874 34445679999998877663 34444443211000011 123555566
Q ss_pred HHHHhcC-CcEEEEEEcCCC
Q 047503 273 VRQYLHD-KNYMIVLDDVWK 291 (920)
Q Consensus 273 l~~~L~~-kr~LlVlDdv~~ 291 (920)
+.+.++. .--++|+|-|-.
T Consensus 123 ~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT
T ss_pred HHHHhhcccccEEEEecCcc
Confidence 6666654 345899999854
No 423
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.30 E-value=0.1 Score=52.84 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=37.2
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 179 ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
+..++++.+.....+..+|+|.|.+|+|||||.-.+....+.+++==.++=|+-|.+++--.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc
Confidence 55667777776555689999999999999999988876533222222344444455554333
No 424
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.26 E-value=0.7 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.+..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999866
No 425
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=3 Score=48.17 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVNGR-----------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
.++-|..+.++.+.+.+.-+. ....-|.++|++|.|||-||..+.... ..-+|+|..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-------~~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-------NLRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-------CeeEEEecCH----
Confidence 456677777777777665431 124568899999999999999987741 1335666443
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-------------hhhhHHHHhccC--
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-------------ELWGDVEHALLD-- 304 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~-- 304 (920)
+++...+ + .+++.....+.+.-.-+++.+.+|..++. ..-.++.-.+..
T Consensus 736 ElL~KyI---G-------------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 736 ELLSKYI---G-------------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE 799 (952)
T ss_pred HHHHHHh---c-------------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc
Confidence 2222221 1 12233344444444569999999999764 112233333332
Q ss_pred CCCCcEEEE-Eccchhhhhhc-ccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 305 NKKGSRIML-TTRHKAVADFC-KQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 305 ~~~gs~iiv-TtR~~~v~~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
+-.|--|+- |||..-+-.+. .....++.+.=+.=++.+-.++|...+
T Consensus 800 gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 800 GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 224555554 55544333322 222122333333345555667776554
No 426
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.24 E-value=0.066 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++...|.++||+|.||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 34678899999999999999999886
No 427
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.24 E-value=0.83 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|..|.|||||++.+.--
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 359999999999999999998764
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.24 E-value=0.063 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 429
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.23 E-value=0.43 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 047503 195 SVVALVGQGGIGKTTLAGKLF 215 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~ 215 (920)
+++.|.|..|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 699999999999999999987
No 430
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.23 E-value=0.096 Score=53.69 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=54.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhcc----C------CccccC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTG----Q------SALGEM 261 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~------~~~~~~ 261 (920)
+.-+++.|.|.+|+|||+||.++.... .+..=..++||+..++ ..++.+.+ +.++.... . +.....
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIENM-KSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHHH-HHcCCcHHHHhhcCCEEEEeccccc
Confidence 346799999999999999999865431 2221246788887554 33333332 23321110 0 000000
Q ss_pred C---cCCHHHHHHHHHHHhcC-CcEEEEEEcC
Q 047503 262 N---NMEEKDLIIAVRQYLHD-KNYMIVLDDV 289 (920)
Q Consensus 262 ~---~~~~~~l~~~l~~~L~~-kr~LlVlDdv 289 (920)
. ..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 0 34567788888887765 5578999987
No 431
>PRK05973 replicative DNA helicase; Provisional
Probab=93.20 E-value=0.47 Score=48.37 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (920)
-.++.|.|.+|+|||++|.++.... .+ .=..+++++...+ ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeCC--HHHHHHHH
Confidence 4689999999999999999986642 22 2245777776543 44444443
No 432
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.19 E-value=0.58 Score=51.75 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999865
No 433
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.17 E-value=0.25 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|+|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999998874
No 434
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.17 E-value=0.077 Score=53.94 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++.|.|..|.||||+.+.+..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 57999999999999999988653
No 435
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.17 E-value=0.68 Score=56.51 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999854
No 436
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.16 E-value=0.23 Score=59.06 Aligned_cols=100 Identities=18% Similarity=0.100 Sum_probs=61.7
Q ss_pred HHHHHHh-cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcccc
Q 047503 182 ILIGWLV-NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGE 260 (920)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (920)
.|-.+|. .+=+.-+++-|.|..|+||||||.+++.. ....=..++||+..+.++.. .+++++.....-. -
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~ll--v 117 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLL--V 117 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeE--E
Confidence 3444454 23234689999999999999999886553 22233568999988877742 5566654321110 1
Q ss_pred CCcCCHHHHHHHHHHHhcC-CcEEEEEEcCC
Q 047503 261 MNNMEEKDLIIAVRQYLHD-KNYMIVLDDVW 290 (920)
Q Consensus 261 ~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 290 (920)
....+.++....+...++. +--|||+|.+-
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 1112335566666666654 55689999984
No 437
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=3 Score=48.61 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=88.2
Q ss_pred CccccchhhHHHHHHHHhcC----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVNG----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
+++=|.++-+.+|.+-+.-+ -.+.+-|.++|++|.|||-+|+.|+.... ..|++|..+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----H
Confidence 46678999999998776532 12367889999999999999999988521 345666443 2
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-----------hhhhHHHHh----ccCC
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-----------ELWGDVEHA----LLDN 305 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~----l~~~ 305 (920)
++...+- .+++.+.+.+.+.=..++++|.+|.+++. ...+.+.+. +...
T Consensus 741 LLNMYVG----------------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgl 804 (953)
T KOG0736|consen 741 LLNMYVG----------------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGL 804 (953)
T ss_pred HHHHHhc----------------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcc
Confidence 2221111 12233334444433458999999999764 134443332 2222
Q ss_pred C----CCcEEEEEccchhhhh--hcccCCccceeecCCCCHHHHHHH
Q 047503 306 K----KGSRIMLTTRHKAVAD--FCKQSSFVQVHELEALPAVEAWRL 346 (920)
Q Consensus 306 ~----~gs~iivTtR~~~v~~--~~~~~~~~~~~~l~~L~~~~~~~L 346 (920)
+ .+-=||=.|-.++..+ .+....++..+.+++=+++++..=
T Consensus 805 s~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~ 851 (953)
T KOG0736|consen 805 SDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLR 851 (953)
T ss_pred cCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHH
Confidence 2 2223444555554432 344445567778888777776543
No 438
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.1 Score=52.02 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|.+|.||||||+.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35999999999999999999854
No 439
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.13 E-value=0.74 Score=54.97 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=34.6
Q ss_pred CcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCC-CCCcEEEEEccchhhhh
Q 047503 262 NNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDN-KKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 262 ~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 322 (920)
.+.+..+.+. .+.+.+-.++-+++||..=+. +.=..+.+.+... ...+.|+||=|...+..
T Consensus 608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 3455555444 566667788889999987432 1112333444432 23466777777765543
No 440
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.12 E-value=0.079 Score=50.96 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3679999999999999999998864
No 441
>PRK06217 hypothetical protein; Validated
Probab=93.10 E-value=0.062 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|.+|+||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 442
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.10 E-value=0.15 Score=59.86 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=56.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.++.++.|...+.... .+.++|.+|+||||+|+.+.+. -...+|+..+|..-+ ..+...+++.+..+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~~----~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQRR----HVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhCC----eEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 568999998888887776543 6889999999999999998875 233456788897663 3366677777776665
Q ss_pred hh
Q 047503 251 QL 252 (920)
Q Consensus 251 ~~ 252 (920)
..
T Consensus 105 ~~ 106 (637)
T PRK13765 105 KQ 106 (637)
T ss_pred HH
Confidence 43
No 443
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.09 E-value=0.059 Score=52.79 Aligned_cols=22 Identities=55% Similarity=0.740 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 444
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.08 E-value=0.088 Score=54.08 Aligned_cols=65 Identities=18% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (920)
-.+|+..+.....+..+|+|.|.+|+|||||.-.+......+++==.++=|+-|..++--.++-+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45666666666567889999999999999999888765444444344556666777765555443
No 445
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.07 E-value=0.069 Score=47.96 Aligned_cols=27 Identities=44% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccccCCCC
Q 047503 197 VALVGQGGIGKTTLAGKLFNNQYVMNHFD 225 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 225 (920)
|.|.|..|+||||+|+.+... +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999884 666664
No 446
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.06 E-value=0.08 Score=51.77 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 447
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.05 E-value=0.32 Score=54.28 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCCH------H
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNMEE------K 267 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------~ 267 (920)
.-++|.|.+|+|||||+.++..+..... =+.++++-+++... +.+++.++...=.... .-.-....+.+. .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~r-svvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDK-TALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcce-eEEEEECCCCCHHHHHHHH
Confidence 4688999999999999998866422211 14577777766532 3444444433200000 000000011111 1
Q ss_pred HHHHHHHHHh---cCCcEEEEEEcCC
Q 047503 268 DLIIAVRQYL---HDKNYMIVLDDVW 290 (920)
Q Consensus 268 ~l~~~l~~~L---~~kr~LlVlDdv~ 290 (920)
...-.+.+++ ++++.|+++||+-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 1223355666 5789999999984
No 448
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.04 E-value=0.31 Score=54.69 Aligned_cols=39 Identities=41% Similarity=0.420 Sum_probs=26.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
.+++.++|++|+||||++..++........-..+..|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 369999999999999999887653221122235666664
No 449
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.04 E-value=0.5 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 450
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.04 E-value=0.93 Score=48.30 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.++++.|..|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999998763
No 451
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.01 E-value=0.073 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++++|+|+.|+||||||+.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999884
No 452
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.01 E-value=0.32 Score=56.50 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|....+.++++.+..-...-.-|.|+|..|+||+++|+.+.+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 47899999888888877542112234779999999999999998763
No 453
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.01 E-value=0.063 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++.|+|.+|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998774
No 454
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.00 E-value=0.84 Score=54.38 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 455
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.99 E-value=0.1 Score=54.84 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+++.+.... +-+.++|..|+|||++++.....
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhcc
Confidence 44566666554 45689999999999999998764
No 456
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=12 Score=41.24 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=67.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEE-EEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAW-ITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
+-..++|++|.|||+++.+++|. -.|+ ++ +..+..-+ ..+ |
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~----L~yd--IydLeLt~v~~----------------------------n~d----L 277 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY----LNYD--IYDLELTEVKL----------------------------DSD----L 277 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh----cCCc--eEEeeeccccC----------------------------cHH----H
Confidence 56779999999999999999885 1222 11 11111100 111 3
Q ss_pred HHHhc--CCcEEEEEEcCCCc-----------hh---------hhHHHHhccC--CCCC-cEE-EEEccchhhhh--hcc
Q 047503 274 RQYLH--DKNYMIVLDDVWKI-----------EL---------WGDVEHALLD--NKKG-SRI-MLTTRHKAVAD--FCK 325 (920)
Q Consensus 274 ~~~L~--~kr~LlVlDdv~~~-----------~~---------~~~l~~~l~~--~~~g-s~i-ivTtR~~~v~~--~~~ 325 (920)
++.|. ..+-+||+.|++.. +. +.-++.++.. ..+| =|| |.||-..+... .+.
T Consensus 278 r~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlR 357 (457)
T KOG0743|consen 278 RHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLR 357 (457)
T ss_pred HHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcC
Confidence 34342 35677888888653 01 1124444432 1222 255 55776655432 222
Q ss_pred cCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 326 QSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 326 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
...-+--+.+..=+.+....||.++...
T Consensus 358 pGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 358 PGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred CCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 2222245778888888888888887644
No 457
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.98 E-value=0.3 Score=54.26 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCC-H-----
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNME-E----- 266 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~----- 266 (920)
-..++|+|..|+|||||++++++... .+.++.+-+++... ..++..+.+.+-+..... .-....+.+ .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsv-vv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSV-VVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEE-EEEECCCCCHHHHHHH
Confidence 35889999999999999999987521 24555566665543 334433333221100000 000001111 1
Q ss_pred HHHHHHHHHHh--cCCcEEEEEEcCCC
Q 047503 267 KDLIIAVRQYL--HDKNYMIVLDDVWK 291 (920)
Q Consensus 267 ~~l~~~l~~~L--~~kr~LlVlDdv~~ 291 (920)
....-.+.+++ +++..|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11222344555 47899999999943
No 458
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.97 E-value=0.069 Score=29.44 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=6.6
Q ss_pred CCcEEeecCCcccccc
Q 047503 625 NLQTLDLKHSLVTQLP 640 (920)
Q Consensus 625 ~L~~L~L~~~~l~~lp 640 (920)
+|++|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 459
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.96 E-value=0.14 Score=53.66 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE 235 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 235 (920)
+.-+++.|+|.+|+|||++|.++... ...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 45789999999999999999998774 5555888999998754
No 460
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.94 E-value=0.78 Score=55.82 Aligned_cols=23 Identities=57% Similarity=0.710 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999998855
No 461
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=92.92 E-value=0.92 Score=53.82 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998854
No 462
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.92 E-value=0.17 Score=47.96 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.+++|.++|.. +++.++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 557778887754 48999999999999999999886
No 463
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.91 E-value=0.27 Score=53.10 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=43.3
Q ss_pred HHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 185 GWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMN----HFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 185 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
+.|..+=+.-+++-|+|.+|+||||++.+++....... .=..++||+....|+...+. ++++.+
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 34433323468999999999999999999876422211 11379999998888887643 444443
No 464
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.87 E-value=0.48 Score=47.50 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999874
No 465
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.87 E-value=0.64 Score=44.61 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=62.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceE---EEEeCCCCCHHHHHHHHHHHHhhh-ccCCccccCCcC-----
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRA---WITVGRECMKKDLLIKMIKEFHQL-TGQSALGEMNNM----- 264 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~v~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~----- 264 (920)
...|-|++..|.||||.|.-..-. ..++=-.+. |+.-.....-...+... .+... .+....-...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r--a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR--ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 357888999999999999876553 222212232 22222112222233221 11110 011100000000
Q ss_pred CHHHHHHHHHHHhcCCcE-EEEEEcCCCc-----hhhhHHHHhccCCCCCcEEEEEccch
Q 047503 265 EEKDLIIAVRQYLHDKNY-MIVLDDVWKI-----ELWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 265 ~~~~l~~~l~~~L~~kr~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
...+.....++.+...+| |+|||.+-.. -..+++...+.....+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 012234445555655554 9999998432 23456667676666778999999986
No 466
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.87 E-value=0.51 Score=56.18 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998854
No 467
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.86 E-value=0.85 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999855
No 468
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.86 E-value=0.31 Score=54.31 Aligned_cols=95 Identities=17% Similarity=0.332 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCCH------H
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNMEE------K 267 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------~ 267 (920)
.-++|.|.+|+|||+|+.++..+.. +.+-+.++++-+++..+ ..++..++...=.... .-.-....+.+. .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~r-tvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDN-TVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccce-EEEEEeCCCCCHHHHHHHH
Confidence 4688999999999999999877622 23347888888877643 3344444332100000 000000011111 1
Q ss_pred HHHHHHHHHhc---CCcEEEEEEcCCC
Q 047503 268 DLIIAVRQYLH---DKNYMIVLDDVWK 291 (920)
Q Consensus 268 ~l~~~l~~~L~---~kr~LlVlDdv~~ 291 (920)
...-.+.++++ +++.|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22334556664 5899999999943
No 469
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.072 Score=51.84 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 470
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.46 Score=57.07 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=69.3
Q ss_pred CccccchhhHHHHHHHHhcCC------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGR------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (920)
..++|-++.+..|.+.+.... .+...+.+.|+.|+|||-||+.+... +-+..+..+-|+.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 356788888888888876531 24667889999999999999998773 444444444444432 222
Q ss_pred HHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcE-EEEEEcCCCch--hhhHHHHhcc
Q 047503 245 MIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNY-MIVLDDVWKIE--LWGDVEHALL 303 (920)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~~--~~~~l~~~l~ 303 (920)
+.+-++.+ ++ ... .+-..+|.+.++.++| +|+||||+..+ ....+...+.
T Consensus 633 vskligsp-----~g-yvG---~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSP-----PG-YVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCC-----cc-ccc---chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 22222221 11 111 2234477788888875 77799998663 3443444443
No 471
>PRK05439 pantothenate kinase; Provisional
Probab=92.82 E-value=0.13 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
....+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998876
No 472
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.82 E-value=0.075 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998774
No 473
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.81 E-value=0.7 Score=54.99 Aligned_cols=23 Identities=48% Similarity=0.653 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999998854
No 474
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.78 E-value=0.43 Score=49.42 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcCccccCCCCce-EEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCC-HHH--
Q 047503 195 SVVALVGQGGIGKTTLA-GKLFNNQYVMNHFDCR-AWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNME-EKD-- 268 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~-- 268 (920)
.-++|+|..|+|||+|| ..+.+. .+-+.+ +++-+++..+ ..++..++.+.=.... .-.-....+.+ ...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~-tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEY-TIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccce-eEEEEeCCCCchhHHHH
Confidence 46889999999999996 556553 123444 6666666533 3344433332100000 00000001111 111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEEcCCCc-hhhhHHHHh
Q 047503 269 ---LIIAVRQYL--HDKNYMIVLDDVWKI-ELWGDVEHA 301 (920)
Q Consensus 269 ---l~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~~ 301 (920)
..-.+.+++ +++..|+|+||+-.. +.|.++...
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 122333333 478999999999544 455555433
No 475
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.78 E-value=1.2 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|.+|.||+||...|+-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 35899999999999999999865
No 476
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.77 E-value=0.64 Score=55.81 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|....+.++++.+..-.....-|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46889998888888877653222334679999999999999999874
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.75 E-value=0.24 Score=54.18 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=63.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
..++.|.|..|.||||+.+.+.+. +..+...+++. +.++.... ... ...+... . +. ..+.......+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q--~----ev-g~~~~~~~~~l 188 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRN-KRSLINQ--R----EV-GLDTLSFANAL 188 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccC-ccceEEc--c----cc-CCCCcCHHHHH
Confidence 368999999999999999998774 44344455553 32221110 000 0000000 0 00 11112345667
Q ss_pred HHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhh
Q 047503 274 RQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVA 321 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 321 (920)
+..|+..+=.|++|.+.+.+.+...... ...|..++.|.-.....
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 7888889999999999887766553333 23355566666544433
No 478
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.71 E-value=0.27 Score=56.46 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=71.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcc-ccC-----CCCceEEEEeCCC--C---CH------------HHHHHHHHHHHhh
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQY-VMN-----HFDCRAWITVGRE--C---MK------------KDLLIKMIKEFHQ 251 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~~-----~F~~~~wv~v~~~--~---~~------------~~~~~~i~~~l~~ 251 (920)
.-|+|+|..|+|||||.+.+..... ..+ .--.+.++.-... . ++ ....+..+..++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 5789999999999999999854311 011 1011222221110 0 11 2333444444433
Q ss_pred hccCCccccCCcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhhhcccC
Q 047503 252 LTGQSALGEMNNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQS 327 (920)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 327 (920)
.... ....+...+..+..+ .+...+-.+.-++|||.-=+. +..+.+..++.... |+ ||+.|-++.....+..
T Consensus 429 ~~~~-~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va~- 504 (530)
T COG0488 429 TGED-QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVAT- 504 (530)
T ss_pred ChHH-HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhcc-
Confidence 2111 112234445444443 455556678899999987543 33344444444333 44 7888888876655432
Q ss_pred CccceeecCC
Q 047503 328 SFVQVHELEA 337 (920)
Q Consensus 328 ~~~~~~~l~~ 337 (920)
.++.+.+
T Consensus 505 ---~i~~~~~ 511 (530)
T COG0488 505 ---RIWLVED 511 (530)
T ss_pred ---eEEEEcC
Confidence 4455543
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.71 E-value=0.49 Score=50.89 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
-..+.|+|..|.|||||++.+... +... ..++.+.-........ .. ........ .......-...+.+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~-~~iv~ied~~El~~~~--~~---~~~l~~~~----~~~~~~~~~~~~~l 211 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKD-ERIITIEDTREIFLPH--PN---YVHLFYSK----GGQGLAKVTPKDLL 211 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCcc-ccEEEEcCccccCCCC--CC---EEEEEecC----CCCCcCccCHHHHH
Confidence 368999999999999999988764 2221 1222221111111100 00 00000000 00001112234556
Q ss_pred HHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhh
Q 047503 274 RQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAV 320 (920)
Q Consensus 274 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 320 (920)
...|+...=.||+|.+...+.|+- ...+..+..| ++.|+.....
T Consensus 212 ~~~Lr~~pd~ii~gE~r~~e~~~~-l~a~~~g~~~--~i~T~Ha~~~ 255 (308)
T TIGR02788 212 QSCLRMRPDRIILGELRGDEAFDF-IRAVNTGHPG--SITTLHAGSP 255 (308)
T ss_pred HHHhcCCCCeEEEeccCCHHHHHH-HHHHhcCCCe--EEEEEeCCCH
Confidence 667788888899999998777754 3333333222 4666655443
No 480
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.70 E-value=0.11 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999987654
No 481
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.68 E-value=0.42 Score=54.13 Aligned_cols=53 Identities=25% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE 235 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 235 (920)
..+-+.|..+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 3444444444233579999999999999999998775 2222245788876543
No 482
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.67 E-value=0.1 Score=45.55 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q 047503 194 RSVVALVGQGGIGKTTLAGKLF 215 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~ 215 (920)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 483
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.65 E-value=11 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q 047503 194 RSVVALVGQGGIGKTTLAGKLF 215 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~ 215 (920)
.+++.|.|+.+.||||+.+.+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHH
Confidence 5789999999999999999874
No 484
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.63 E-value=0.098 Score=51.56 Aligned_cols=36 Identities=36% Similarity=0.499 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT 231 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (920)
.+++.|+|+.|+|||||++.+..+ ...+|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 468999999999999999999884 455665444444
No 485
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.61 E-value=0.074 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.61 E-value=0.1 Score=52.25 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+..+|.|+|.+|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998773
No 487
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=92.60 E-value=0.49 Score=55.50 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998854
No 488
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.58 E-value=0.095 Score=47.33 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 047503 197 VALVGQGGIGKTTLAGKLFNNQ 218 (920)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~ 218 (920)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 489
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.51 E-value=0.62 Score=47.20 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-+++.|.|..|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 490
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.50 E-value=0.096 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999774
No 491
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.45 E-value=0.75 Score=51.31 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHh-----cCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 176 IESARDILIGWLV-----NGRKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 176 r~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-...++++.+||. .+.-+.+|+.|.|++|+||||-++.+..
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 3566788889998 3344567999999999999999998876
No 492
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.44 E-value=0.83 Score=54.22 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998744
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.42 E-value=0.088 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
No 494
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=92.42 E-value=0.86 Score=55.56 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-..++|+|..|.|||||++.+..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998854
No 495
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.41 E-value=0.099 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+|+|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 496
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=92.39 E-value=1.4 Score=51.26 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||.+.++-
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999865
No 497
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.38 E-value=0.28 Score=54.44 Aligned_cols=96 Identities=13% Similarity=0.247 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccC--CCC---------ceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMN--HFD---------CRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNN 263 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 263 (920)
.-++|.|.+|+|||||+.++.++..... ..| .++++-+++..+..+.+.+.+.+-+.....-.-....+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4688999999999999999987643100 022 56777788775555555555544331100000000001
Q ss_pred C-CH-----HHHHHHHHHHhc---CCcEEEEEEcCC
Q 047503 264 M-EE-----KDLIIAVRQYLH---DKNYMIVLDDVW 290 (920)
Q Consensus 264 ~-~~-----~~l~~~l~~~L~---~kr~LlVlDdv~ 290 (920)
. .. ....-.+.++++ +++.|+++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 1 11 112233556665 589999999993
No 498
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.36 E-value=0.17 Score=50.17 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE
Q 047503 176 IESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT 231 (920)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (920)
+..+-...++.|.. ..++.+.|.+|.|||.||....-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 44455666777763 45999999999999999998876644558888887775
No 499
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.36 E-value=0.38 Score=53.49 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE-CMKKDLLIK 244 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~ 244 (920)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+.+.+
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~ 202 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDF 202 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHH
Confidence 3588999999999999999998742 3444566555553 333344443
No 500
>PRK13947 shikimate kinase; Provisional
Probab=92.35 E-value=0.09 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
Done!