Query 047503
Match_columns 920
No_of_seqs 467 out of 3988
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 20:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-47 4.1E-52 446.9 26.2 321 174-518 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.1E-39 1.1E-43 377.0 21.1 292 172-509 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-38 3.1E-42 404.2 29.2 316 169-516 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.3E-34 7.9E-39 340.7 28.6 312 170-513 123-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.2E-25 4.2E-30 273.6 14.1 339 531-878 294-715 (768)
6 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-25 1.2E-29 263.5 17.5 346 529-878 30-556 (606)
7 4eco_A Uncharacterized protein 99.9 1.5E-25 5.2E-30 266.4 14.0 333 529-878 204-598 (636)
8 4fmz_A Internalin; leucine ric 99.9 8.8E-25 3E-29 240.7 18.3 302 550-878 42-344 (347)
9 3rgz_A Protein brassinosteroid 99.9 1.5E-25 5.3E-30 272.7 13.2 295 574-878 243-549 (768)
10 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.1E-29 243.6 19.3 307 549-879 42-351 (390)
11 4ecn_A Leucine-rich repeat pro 99.9 3.4E-25 1.2E-29 267.4 15.6 313 550-878 489-838 (876)
12 4eco_A Uncharacterized protein 99.9 3.8E-25 1.3E-29 262.9 14.2 297 570-878 198-577 (636)
13 3oja_B Anopheles plasmodium-re 99.9 2.1E-24 7.2E-29 255.1 18.8 306 549-878 48-356 (597)
14 3v47_A TOLL-like receptor 5B a 99.9 2.2E-24 7.6E-29 247.0 17.3 342 529-878 28-406 (455)
15 2id5_A Lingo-1, leucine rich r 99.9 6.3E-24 2.2E-28 244.6 21.1 291 579-878 33-331 (477)
16 2z63_A TOLL-like receptor 4, v 99.9 2.1E-24 7.1E-29 254.9 16.4 344 530-878 27-529 (570)
17 2z7x_B TOLL-like receptor 1, v 99.9 7.6E-24 2.6E-28 246.9 20.7 333 530-878 20-479 (520)
18 4ecn_A Leucine-rich repeat pro 99.9 1.6E-24 5.3E-29 261.7 15.1 318 548-878 444-817 (876)
19 1o6v_A Internalin A; bacterial 99.9 1.6E-23 5.3E-28 240.2 22.5 318 531-878 46-386 (466)
20 3t6q_A CD180 antigen; protein- 99.9 4.3E-24 1.5E-28 254.0 16.9 292 579-878 255-558 (606)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-23 5E-28 246.6 18.9 127 750-878 354-508 (562)
22 1o6v_A Internalin A; bacterial 99.9 8.1E-23 2.8E-27 234.2 21.7 300 549-878 43-364 (466)
23 3t6q_A CD180 antigen; protein- 99.9 3.1E-23 1.1E-27 246.6 18.8 339 529-878 31-436 (606)
24 4fmz_A Internalin; leucine ric 99.9 7.7E-23 2.6E-27 225.1 19.7 301 530-855 43-345 (347)
25 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-22 4.1E-27 241.5 22.4 316 551-878 31-435 (606)
26 2id5_A Lingo-1, leucine rich r 99.9 8.9E-23 3E-27 235.0 20.4 294 551-855 31-332 (477)
27 2z81_A CD282 antigen, TOLL-lik 99.9 3.8E-23 1.3E-27 242.8 17.3 338 530-878 25-508 (549)
28 3bz5_A Internalin-J, INLJ; leu 99.9 2E-22 7E-27 228.9 21.7 294 550-878 40-350 (457)
29 4fcg_A Uncharacterized protein 99.9 1E-22 3.5E-27 221.3 18.0 233 576-877 79-311 (328)
30 3o6n_A APL1; leucine-rich repe 99.9 3.5E-23 1.2E-27 231.7 14.7 280 576-878 43-329 (390)
31 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-22 8.8E-27 246.9 23.5 336 529-878 22-437 (844)
32 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-22 4.6E-27 236.3 17.2 331 534-878 3-455 (520)
33 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.3E-27 239.9 14.4 280 576-878 49-335 (597)
34 2z81_A CD282 antigen, TOLL-lik 99.9 5E-22 1.7E-26 233.2 19.4 178 551-737 25-210 (549)
35 2z63_A TOLL-like receptor 4, v 99.9 1.7E-22 5.9E-27 238.4 14.7 131 551-687 27-160 (570)
36 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.5E-27 229.9 15.1 319 551-878 29-382 (455)
37 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-22 2.2E-26 224.7 17.1 274 573-878 37-329 (457)
38 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-21 3.8E-26 241.3 20.3 316 550-878 22-392 (844)
39 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-21 6.2E-26 234.6 21.4 339 529-877 23-440 (680)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-21 3.5E-26 230.8 17.8 334 531-878 31-484 (562)
41 1ziw_A TOLL-like receptor 3; i 99.9 7.2E-22 2.5E-26 238.1 14.1 317 552-877 25-391 (680)
42 1xku_A Decorin; proteoglycan, 99.9 3.4E-21 1.2E-25 210.2 16.7 283 578-877 31-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-21 6E-26 212.6 12.8 282 579-878 34-331 (332)
44 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-21 5.3E-26 210.7 8.7 247 579-858 51-306 (313)
45 4g8a_A TOLL-like receptor 4; l 99.8 8.2E-21 2.8E-25 227.2 14.9 346 529-878 50-578 (635)
46 1ogq_A PGIP-2, polygalacturona 99.8 4.3E-21 1.5E-25 207.3 5.5 244 601-878 50-302 (313)
47 2ft3_A Biglycan; proteoglycan, 99.8 5.7E-20 2E-24 200.6 13.9 247 573-854 73-331 (332)
48 1jl5_A Outer protein YOPM; leu 99.8 1.7E-19 5.9E-24 204.6 17.5 302 529-878 89-407 (454)
49 3g06_A SSPH2 (leucine-rich rep 99.8 6.2E-19 2.1E-23 206.1 19.7 255 578-878 40-295 (622)
50 1xku_A Decorin; proteoglycan, 99.8 4.2E-19 1.4E-23 193.6 16.7 264 600-878 30-304 (330)
51 2z80_A TOLL-like receptor 2, v 99.8 9.5E-20 3.2E-24 200.7 11.5 249 579-878 53-312 (353)
52 1z7x_W Ribonuclease inhibitor; 99.8 7.6E-22 2.6E-26 226.3 -6.0 345 531-878 3-409 (461)
53 4fcg_A Uncharacterized protein 99.8 2.3E-19 8E-24 194.8 12.2 202 572-805 98-311 (328)
54 4g8a_A TOLL-like receptor 4; l 99.8 6.6E-19 2.3E-23 210.6 17.2 318 552-878 52-553 (635)
55 3qfl_A MLA10; coiled-coil, (CC 99.8 1.3E-19 4.6E-24 160.5 7.0 111 4-119 1-114 (115)
56 3ogk_B Coronatine-insensitive 99.8 6.1E-20 2.1E-24 217.6 4.7 345 531-878 112-524 (592)
57 2z66_A Variable lymphocyte rec 99.8 7.4E-19 2.5E-23 189.4 10.5 226 578-855 28-260 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.8 7.2E-20 2.5E-24 198.2 2.5 247 569-856 25-275 (317)
59 1jl5_A Outer protein YOPM; leu 99.8 7.2E-18 2.5E-22 191.3 18.9 295 532-878 72-368 (454)
60 2z80_A TOLL-like receptor 2, v 99.8 2.5E-18 8.7E-23 189.2 14.7 248 551-808 51-314 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-18 7.5E-23 201.5 12.8 241 579-862 62-303 (622)
62 2z66_A Variable lymphocyte rec 99.7 1.5E-18 5.2E-23 187.0 9.1 225 551-806 27-259 (306)
63 3zyi_A Leucine-rich repeat-con 99.7 1.2E-17 4.2E-22 190.3 16.1 221 578-830 75-301 (452)
64 3zyj_A Leucine-rich repeat-con 99.7 8.3E-18 2.9E-22 191.0 13.5 217 578-805 64-289 (440)
65 1z7x_W Ribonuclease inhibitor; 99.7 2.7E-20 9.4E-25 213.3 -7.7 324 552-878 3-381 (461)
66 2p1m_B Transport inhibitor res 99.7 5.9E-19 2E-23 209.2 1.8 346 531-879 105-518 (594)
67 1ozn_A Reticulon 4 receptor; N 99.7 2.4E-18 8.3E-23 183.3 5.8 198 578-805 32-235 (285)
68 3zyi_A Leucine-rich repeat-con 99.7 2.9E-17 9.9E-22 187.2 14.1 221 551-805 74-300 (452)
69 3zyj_A Leucine-rich repeat-con 99.7 2.5E-17 8.4E-22 187.1 13.2 238 579-829 44-289 (440)
70 3ogk_B Coronatine-insensitive 99.7 1.1E-17 3.7E-22 198.3 10.4 340 531-877 164-548 (592)
71 1wwl_A Monocyte differentiatio 99.7 9.6E-18 3.3E-22 181.0 9.0 219 580-808 65-309 (312)
72 3oja_A Leucine-rich immune mol 99.7 7.8E-18 2.7E-22 192.9 6.2 234 575-827 31-270 (487)
73 3o53_A Protein LRIM1, AGAP0063 99.7 1.4E-18 4.7E-23 188.1 -1.9 258 578-878 10-273 (317)
74 3oja_A Leucine-rich immune mol 99.7 1E-16 3.4E-21 183.7 12.6 214 600-878 33-248 (487)
75 2ast_B S-phase kinase-associat 99.7 1.1E-17 3.9E-22 182.8 3.4 251 580-864 49-314 (336)
76 1wwl_A Monocyte differentiatio 99.7 9.9E-18 3.4E-22 180.9 1.4 247 573-855 38-308 (312)
77 1ozn_A Reticulon 4 receptor; N 99.7 8.3E-16 2.8E-20 163.6 15.7 220 581-878 14-236 (285)
78 1h6u_A Internalin H; cell adhe 99.6 6.9E-16 2.3E-20 165.8 14.1 191 575-807 38-229 (308)
79 2p1m_B Transport inhibitor res 99.6 1.7E-17 6E-22 196.5 1.6 319 550-876 182-540 (594)
80 2z62_A TOLL-like receptor 4, v 99.6 5.5E-16 1.9E-20 164.1 11.5 198 578-807 28-236 (276)
81 2ast_B S-phase kinase-associat 99.6 2.7E-16 9.3E-21 171.8 6.8 206 572-781 62-282 (336)
82 2ca6_A RAN GTPase-activating p 99.6 1.9E-17 6.4E-22 184.7 -3.0 88 571-658 25-133 (386)
83 3rfs_A Internalin B, repeat mo 99.6 1.4E-15 4.9E-20 160.3 11.5 81 575-657 38-119 (272)
84 2ca6_A RAN GTPase-activating p 99.6 3.4E-17 1.2E-21 182.6 -1.6 257 579-855 10-315 (386)
85 1w5s_A Origin recognition comp 99.6 2.3E-14 8E-19 161.2 20.1 302 170-494 21-372 (412)
86 1h6u_A Internalin H; cell adhe 99.6 4E-15 1.4E-19 159.9 13.0 208 584-836 25-233 (308)
87 2o6q_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 155.1 13.4 195 579-806 17-216 (270)
88 2qen_A Walker-type ATPase; unk 99.6 1E-13 3.6E-18 152.1 22.2 300 169-510 10-349 (350)
89 2z62_A TOLL-like receptor 4, v 99.6 9E-15 3.1E-19 154.7 11.4 204 552-786 28-239 (276)
90 1p9a_G Platelet glycoprotein I 99.6 1.1E-14 3.7E-19 154.8 11.9 103 575-686 7-110 (290)
91 2o6q_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 149.1 15.8 54 602-657 17-71 (270)
92 4glp_A Monocyte differentiatio 99.5 2.2E-14 7.6E-19 154.4 13.9 206 576-808 89-307 (310)
93 2xwt_C Thyrotropin receptor; s 99.5 5.3E-14 1.8E-18 145.2 16.1 204 590-878 23-237 (239)
94 1p9a_G Platelet glycoprotein I 99.5 1.7E-14 5.9E-19 153.3 12.0 200 596-878 5-206 (290)
95 2fna_A Conserved hypothetical 99.5 8.1E-13 2.8E-17 145.4 25.2 299 169-509 11-356 (357)
96 4ay9_X Follicle-stimulating ho 99.5 3.2E-14 1.1E-18 156.0 13.4 237 581-851 12-254 (350)
97 3rfs_A Internalin B, repeat mo 99.5 2.4E-14 8.1E-19 151.0 9.2 154 549-736 38-194 (272)
98 2xwt_C Thyrotropin receptor; s 99.5 3.1E-14 1.1E-18 147.0 9.7 198 578-830 31-237 (239)
99 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.2E-19 167.6 8.6 186 575-800 40-226 (605)
100 1h6t_A Internalin B; cell adhe 99.5 1.3E-13 4.4E-18 146.7 12.2 80 575-657 43-122 (291)
101 3goz_A Leucine-rich repeat-con 99.5 1.2E-14 4.1E-19 160.2 2.5 118 569-687 13-149 (362)
102 3goz_A Leucine-rich repeat-con 99.4 7.5E-14 2.6E-18 153.8 8.1 222 584-806 4-264 (362)
103 1h6t_A Internalin B; cell adhe 99.4 3.6E-13 1.2E-17 143.2 12.3 174 599-789 44-218 (291)
104 3cvr_A Invasion plasmid antige 99.4 6.8E-14 2.3E-18 161.4 6.9 93 578-687 59-151 (571)
105 3m19_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 134.5 15.6 174 578-807 14-191 (251)
106 4ezg_A Putative uncharacterize 99.4 2.9E-13 1E-17 135.0 8.7 149 575-733 41-191 (197)
107 4ezg_A Putative uncharacterize 99.4 4.4E-13 1.5E-17 133.7 9.6 151 721-878 42-192 (197)
108 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.8E-17 143.7 13.2 216 578-828 30-255 (350)
109 1m9s_A Internalin B; cell inva 99.4 7.1E-13 2.4E-17 154.7 11.3 172 548-736 39-210 (605)
110 4glp_A Monocyte differentiatio 99.4 5.4E-13 1.8E-17 143.5 9.3 106 768-878 194-305 (310)
111 2qby_B CDC6 homolog 3, cell di 99.4 5.3E-11 1.8E-15 132.2 24.3 297 171-494 20-340 (384)
112 1xeu_A Internalin C; cellular 99.3 5.3E-13 1.8E-17 139.5 6.5 79 576-657 17-95 (263)
113 2v1u_A Cell division control p 99.3 6.2E-11 2.1E-15 131.9 23.4 299 170-494 18-352 (387)
114 1xeu_A Internalin C; cellular 99.3 3.7E-12 1.3E-16 133.1 9.8 147 574-734 37-183 (263)
115 3m19_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 127.3 12.2 85 573-657 54-141 (251)
116 3cvr_A Invasion plasmid antige 99.3 3.8E-12 1.3E-16 146.8 7.7 177 602-809 60-244 (571)
117 2o6s_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 126.9 7.8 79 579-657 29-110 (208)
118 1fnn_A CDC6P, cell division co 99.2 4.9E-10 1.7E-14 124.6 22.8 296 171-494 17-352 (389)
119 2qby_A CDC6 homolog 1, cell di 99.2 2E-10 6.7E-15 127.7 18.0 296 170-493 19-348 (386)
120 2ell_A Acidic leucine-rich nuc 99.2 4.5E-11 1.5E-15 115.7 9.2 107 575-686 21-130 (168)
121 2xot_A Amphoterin-induced prot 99.2 7.1E-11 2.4E-15 129.8 11.8 125 581-736 21-149 (361)
122 4b8c_D Glucose-repressible alc 99.2 4.5E-11 1.5E-15 143.2 11.0 151 531-687 173-327 (727)
123 3e6j_A Variable lymphocyte rec 99.2 1.1E-10 3.9E-15 119.0 12.3 127 552-686 40-169 (229)
124 2je0_A Acidic leucine-rich nuc 99.2 2.3E-11 7.8E-16 115.1 6.1 107 576-687 15-124 (149)
125 2v9t_B SLIT homolog 2 protein 99.1 1.2E-10 4E-15 118.1 10.9 85 573-657 51-138 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.3E-15 117.9 11.1 122 580-706 34-161 (220)
127 2ell_A Acidic leucine-rich nuc 99.1 7.8E-11 2.7E-15 113.9 9.1 128 552-687 24-158 (168)
128 1njg_A DNA polymerase III subu 99.1 5.3E-10 1.8E-14 115.4 16.1 199 171-389 23-231 (250)
129 2v9t_B SLIT homolog 2 protein 99.1 6.6E-11 2.3E-15 120.0 8.8 105 578-687 32-139 (220)
130 2v70_A SLIT-2, SLIT homolog 2 99.1 5.5E-11 1.9E-15 120.5 8.0 146 581-734 14-164 (220)
131 1a9n_A U2A', U2A'; complex (nu 99.1 6.8E-11 2.3E-15 115.3 8.1 105 575-687 16-124 (176)
132 3e6j_A Variable lymphocyte rec 99.1 1.1E-10 3.6E-15 119.3 9.4 104 578-687 40-146 (229)
133 2o6s_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 113.4 11.9 128 551-686 27-158 (208)
134 2je0_A Acidic leucine-rich nuc 99.1 7.6E-11 2.6E-15 111.5 6.3 125 552-684 17-148 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.1 1.7E-10 5.7E-15 112.5 8.3 129 549-687 16-151 (176)
136 1dce_A Protein (RAB geranylger 99.1 2.2E-10 7.6E-15 132.8 9.7 101 580-687 443-544 (567)
137 2chg_A Replication factor C sm 99.0 3.6E-09 1.2E-13 107.4 16.5 184 171-386 17-204 (226)
138 4b8c_D Glucose-repressible alc 99.0 4.5E-11 1.5E-15 143.3 1.8 184 585-783 208-403 (727)
139 2xot_A Amphoterin-induced prot 99.0 2.5E-10 8.6E-15 125.4 7.5 124 579-707 40-172 (361)
140 1w8a_A SLIT protein; signaling 99.0 5.8E-10 2E-14 110.3 9.0 100 581-687 11-113 (192)
141 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.8E-14 118.6 11.7 279 551-873 24-327 (329)
142 1ds9_A Outer arm dynein; leuci 99.0 2.5E-11 8.4E-16 121.0 -1.3 84 572-657 42-125 (198)
143 2wfh_A SLIT homolog 2 protein 99.0 1.5E-09 5.2E-14 107.2 10.0 79 579-657 32-112 (193)
144 1w8a_A SLIT protein; signaling 98.9 1.5E-09 5.1E-14 107.3 8.9 104 579-687 30-137 (192)
145 2wfh_A SLIT homolog 2 protein 98.9 2.5E-09 8.4E-14 105.7 9.9 120 581-707 13-135 (193)
146 1dce_A Protein (RAB geranylger 98.9 1.3E-09 4.6E-14 126.3 9.2 84 574-658 459-544 (567)
147 1ds9_A Outer arm dynein; leuci 98.9 4.1E-11 1.4E-15 119.4 -3.6 142 580-729 25-180 (198)
148 1sxj_B Activator 1 37 kDa subu 98.9 1.9E-08 6.6E-13 108.5 14.6 186 171-388 21-212 (323)
149 2o6r_A Variable lymphocyte rec 98.8 8.7E-09 3E-13 100.4 10.4 104 578-687 28-135 (177)
150 1hqc_A RUVB; extended AAA-ATPa 98.8 1.6E-08 5.6E-13 109.1 12.6 275 171-492 12-324 (324)
151 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.8E-13 98.7 9.3 100 580-687 11-113 (170)
152 2r9u_A Variable lymphocyte rec 98.8 1.2E-08 4.1E-13 98.8 9.3 80 578-657 33-115 (174)
153 2r9u_A Variable lymphocyte rec 98.8 1.5E-08 5.1E-13 98.1 8.8 100 580-687 14-116 (174)
154 2o6r_A Variable lymphocyte rec 98.7 2.8E-08 9.5E-13 96.7 8.8 106 771-878 28-135 (177)
155 3g39_A Variable lymphocyte rec 98.7 4.4E-08 1.5E-12 94.5 8.5 83 578-660 30-115 (170)
156 1iqp_A RFCS; clamp loader, ext 98.6 1.6E-07 5.5E-12 101.4 13.0 187 171-389 25-215 (327)
157 4fdw_A Leucine rich hypothetic 98.6 4.7E-07 1.6E-11 100.1 16.7 245 569-852 127-379 (401)
158 3sb4_A Hypothetical leucine ri 98.6 1.1E-07 3.7E-12 102.8 10.9 199 600-805 100-307 (329)
159 2ra8_A Uncharacterized protein 98.6 1.3E-08 4.3E-13 110.6 3.3 127 750-878 173-318 (362)
160 3te6_A Regulatory protein SIR3 98.6 6.3E-07 2.1E-11 94.3 15.3 212 171-389 20-283 (318)
161 4fdw_A Leucine rich hypothetic 98.4 1.9E-06 6.5E-11 95.2 15.6 232 553-802 136-377 (401)
162 1jr3_A DNA polymerase III subu 98.4 1.6E-06 5.5E-11 95.4 15.0 197 171-386 16-221 (373)
163 1jbk_A CLPB protein; beta barr 98.4 3.7E-07 1.3E-11 89.9 8.8 45 171-217 22-66 (195)
164 2ifg_A High affinity nerve gro 98.4 3.6E-07 1.2E-11 99.5 9.0 91 570-661 24-117 (347)
165 3un9_A NLR family member X1; l 98.4 3.6E-08 1.2E-12 108.0 0.2 136 578-736 101-252 (372)
166 2ifg_A High affinity nerve gro 98.3 8.5E-07 2.9E-11 96.5 9.4 99 582-687 12-114 (347)
167 2chq_A Replication factor C sm 98.3 2.3E-06 7.9E-11 91.8 11.8 180 171-385 17-203 (319)
168 2z4s_A Chromosomal replication 98.3 1E-05 3.5E-10 90.4 17.0 203 172-407 106-333 (440)
169 3pfi_A Holliday junction ATP-d 98.3 2.9E-05 9.8E-10 84.0 19.1 174 171-385 29-226 (338)
170 3un9_A NLR family member X1; l 98.2 2.8E-07 9.7E-12 100.8 2.8 156 530-687 71-250 (372)
171 3h4m_A Proteasome-activating n 98.2 7E-06 2.4E-10 86.4 13.5 182 170-384 16-229 (285)
172 4fs7_A Uncharacterized protein 98.2 1.6E-05 5.4E-10 88.1 16.7 301 548-877 67-376 (394)
173 3bos_A Putative DNA replicatio 98.2 2.3E-06 8E-11 87.6 8.5 172 171-386 28-217 (242)
174 2ra8_A Uncharacterized protein 98.2 2.2E-06 7.4E-11 93.0 8.0 59 595-655 166-227 (362)
175 3syl_A Protein CBBX; photosynt 98.1 1.6E-05 5.4E-10 84.8 13.8 159 172-353 32-219 (309)
176 1sxj_A Activator 1 95 kDa subu 98.1 5.5E-06 1.9E-10 94.8 10.8 193 171-387 39-254 (516)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.1 6E-05 2E-09 78.1 17.5 184 171-385 6-221 (262)
178 3pvs_A Replication-associated 98.1 3.7E-05 1.3E-09 85.7 16.4 177 171-383 26-212 (447)
179 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 83.4 3.4 36 771-806 61-96 (176)
180 1xwi_A SKD1 protein; VPS4B, AA 98.1 9.7E-05 3.3E-09 78.8 19.1 185 171-387 12-224 (322)
181 1sxj_D Activator 1 41 kDa subu 98.1 2.3E-05 8E-10 85.3 14.0 194 171-385 37-234 (353)
182 4fs7_A Uncharacterized protein 98.0 7.2E-05 2.5E-09 82.7 16.9 326 519-872 59-393 (394)
183 1d2n_A N-ethylmaleimide-sensit 98.0 7.8E-05 2.7E-09 77.7 16.2 171 171-377 33-228 (272)
184 1sxj_E Activator 1 40 kDa subu 98.0 1.8E-05 6E-10 86.3 11.4 195 171-386 14-237 (354)
185 3uk6_A RUVB-like 2; hexameric 98.0 0.00012 4.2E-09 80.0 17.5 203 171-384 44-301 (368)
186 3d8b_A Fidgetin-like protein 1 98.0 8.3E-05 2.8E-09 80.7 14.9 184 171-387 84-296 (357)
187 3u61_B DNA polymerase accessor 97.9 0.00014 4.9E-09 77.9 16.5 182 171-388 26-219 (324)
188 2p65_A Hypothetical protein PF 97.9 1.4E-05 4.8E-10 77.9 7.7 45 171-217 22-66 (187)
189 3eie_A Vacuolar protein sortin 97.9 8.8E-05 3E-09 79.3 14.1 184 171-387 18-229 (322)
190 3vfd_A Spastin; ATPase, microt 97.9 0.00024 8E-09 78.2 17.9 184 170-386 114-326 (389)
191 2zan_A Vacuolar protein sortin 97.9 0.0002 6.7E-09 80.1 16.9 185 171-387 134-346 (444)
192 1io0_A Tropomodulin; LRR prote 97.9 3.2E-06 1.1E-10 82.5 1.8 89 569-657 27-133 (185)
193 1a5t_A Delta prime, HOLB; zinc 97.9 0.00024 8.3E-09 76.3 16.3 169 177-385 8-204 (334)
194 3cf0_A Transitional endoplasmi 97.8 0.00026 8.7E-09 74.9 15.9 156 171-353 15-201 (301)
195 1l8q_A Chromosomal replication 97.8 0.00044 1.5E-08 74.0 18.0 166 180-380 23-202 (324)
196 2qp9_X Vacuolar protein sortin 97.8 0.00023 7.7E-09 77.1 15.1 183 171-386 51-261 (355)
197 3e4g_A ATP synthase subunit S, 97.8 5.3E-06 1.8E-10 78.7 1.8 84 795-878 61-150 (176)
198 3b9p_A CG5977-PA, isoform A; A 97.8 0.00032 1.1E-08 74.1 15.6 182 171-386 21-233 (297)
199 1sxj_C Activator 1 40 kDa subu 97.8 0.00028 9.4E-09 76.2 15.2 179 171-381 25-207 (340)
200 3n70_A Transport activator; si 97.7 5.5E-05 1.9E-09 70.3 8.0 113 172-318 2-116 (145)
201 3ec2_A DNA replication protein 97.7 7.3E-05 2.5E-09 72.4 7.8 119 176-318 19-143 (180)
202 3rw6_A Nuclear RNA export fact 97.7 4E-05 1.4E-09 78.5 5.9 80 574-654 166-258 (267)
203 1lv7_A FTSH; alpha/beta domain 97.6 0.00074 2.5E-08 69.5 14.6 155 171-352 12-196 (257)
204 1qvr_A CLPB protein; coiled co 97.6 0.00025 8.6E-09 86.4 12.2 154 171-350 170-344 (854)
205 4b4t_J 26S protease regulatory 97.6 0.0012 4.2E-08 71.1 16.0 176 171-379 148-354 (405)
206 2w58_A DNAI, primosome compone 97.5 8.9E-05 3.1E-09 73.3 6.3 54 177-232 35-90 (202)
207 1io0_A Tropomodulin; LRR prote 97.5 5.7E-05 2E-09 73.5 4.5 109 550-658 34-162 (185)
208 4b4t_L 26S protease subunit RP 97.5 0.0019 6.4E-08 70.8 16.7 176 171-379 181-387 (437)
209 3co5_A Putative two-component 97.5 7.3E-05 2.5E-09 69.3 4.5 46 172-217 5-50 (143)
210 4gt6_A Cell surface protein; l 97.5 0.0012 4.1E-08 72.7 15.1 109 766-881 260-371 (394)
211 4b4t_H 26S protease regulatory 97.4 0.0011 3.8E-08 72.4 13.9 176 171-379 209-415 (467)
212 4gt6_A Cell surface protein; l 97.4 0.0011 3.9E-08 73.0 14.4 301 553-876 65-387 (394)
213 2gno_A DNA polymerase III, gam 97.4 0.0011 3.8E-08 69.7 13.0 148 175-351 1-152 (305)
214 1in4_A RUVB, holliday junction 97.4 0.01 3.5E-07 63.5 20.7 174 171-385 25-222 (334)
215 3rw6_A Nuclear RNA export fact 97.3 3.8E-05 1.3E-09 78.7 0.8 60 598-658 167-231 (267)
216 3hu3_A Transitional endoplasmi 97.3 0.0015 5.2E-08 73.4 13.9 182 171-385 204-414 (489)
217 2ce7_A Cell division protein F 97.3 0.0014 4.9E-08 73.0 13.4 176 171-379 16-221 (476)
218 4b4t_M 26S protease regulatory 97.3 0.002 6.9E-08 70.5 14.1 174 171-378 181-386 (434)
219 4b4t_I 26S protease regulatory 97.3 0.0051 1.7E-07 66.5 16.7 174 171-378 182-387 (437)
220 3pxg_A Negative regulator of g 97.3 0.00054 1.8E-08 77.1 9.4 146 171-351 180-338 (468)
221 4b4t_K 26S protease regulatory 97.3 0.0032 1.1E-07 68.9 15.2 176 170-378 171-378 (428)
222 2bjv_A PSP operon transcriptio 97.3 0.001 3.5E-08 68.8 10.8 47 171-217 6-52 (265)
223 4fcw_A Chaperone protein CLPB; 97.3 0.00085 2.9E-08 71.3 10.3 62 171-234 17-85 (311)
224 2r62_A Cell division protease 97.2 0.00052 1.8E-08 71.2 7.6 155 171-352 11-197 (268)
225 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0037 1.3E-07 75.3 15.0 157 171-351 186-362 (758)
226 1ojl_A Transcriptional regulat 97.1 0.0034 1.2E-07 66.1 12.7 47 171-217 2-48 (304)
227 1ofh_A ATP-dependent HSL prote 97.1 0.002 6.9E-08 68.2 10.8 47 171-217 15-73 (310)
228 3cf2_A TER ATPase, transitiona 97.0 0.0049 1.7E-07 72.8 14.3 177 170-379 203-407 (806)
229 2c9o_A RUVB-like 1; hexameric 97.0 0.0066 2.3E-07 68.0 14.9 47 171-217 37-86 (456)
230 3pxi_A Negative regulator of g 97.0 0.0013 4.5E-08 79.0 9.6 150 171-351 180-338 (758)
231 2kjq_A DNAA-related protein; s 96.8 0.002 7E-08 59.7 7.3 38 194-233 36-73 (149)
232 4h09_A Hypothetical leucine ri 96.7 0.013 4.3E-07 64.1 13.9 60 571-633 62-122 (379)
233 3pxi_A Negative regulator of g 96.7 0.0025 8.6E-08 76.6 8.8 153 171-351 491-675 (758)
234 1ixz_A ATP-dependent metallopr 96.7 0.011 3.7E-07 60.5 12.4 154 171-351 16-199 (254)
235 2dhr_A FTSH; AAA+ protein, hex 96.7 0.014 4.7E-07 65.4 13.7 151 170-351 30-214 (499)
236 2x8a_A Nuclear valosin-contain 96.6 0.029 1E-06 57.9 14.8 153 171-351 10-191 (274)
237 1iy2_A ATP-dependent metallopr 96.5 0.01 3.6E-07 61.6 10.6 155 170-351 39-223 (278)
238 4h09_A Hypothetical leucine ri 96.4 0.04 1.4E-06 60.0 15.1 119 531-656 46-167 (379)
239 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0038 1.3E-07 64.9 6.0 70 194-292 123-194 (331)
240 3m6a_A ATP-dependent protease 96.3 0.017 5.9E-07 66.0 11.8 47 171-217 81-131 (543)
241 1ypw_A Transitional endoplasmi 96.3 0.02 6.7E-07 68.8 12.8 156 170-352 203-386 (806)
242 2qgz_A Helicase loader, putati 96.3 0.0027 9.1E-08 67.0 4.6 56 176-232 133-189 (308)
243 1r6b_X CLPA protein; AAA+, N-t 96.2 0.033 1.1E-06 66.9 14.0 47 171-217 458-511 (758)
244 2cvh_A DNA repair and recombin 96.1 0.018 6.2E-07 57.2 9.4 92 194-291 20-116 (220)
245 3hr8_A Protein RECA; alpha and 95.7 0.026 8.7E-07 60.2 8.8 90 193-291 60-150 (356)
246 1qvr_A CLPB protein; coiled co 95.7 0.049 1.7E-06 66.2 12.5 47 171-217 558-611 (854)
247 1g5t_A COB(I)alamin adenosyltr 95.6 0.042 1.4E-06 52.7 9.3 116 195-318 29-163 (196)
248 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.03 1E-06 56.1 8.0 120 194-318 23-168 (235)
249 1vpl_A ABC transporter, ATP-bi 95.4 0.11 3.8E-06 52.7 12.0 22 195-216 42-63 (256)
250 1n0w_A DNA repair protein RAD5 95.3 0.028 9.7E-07 56.8 7.4 96 194-291 24-130 (243)
251 3c8u_A Fructokinase; YP_612366 95.3 0.011 3.9E-07 58.2 4.3 39 179-217 7-45 (208)
252 3t15_A Ribulose bisphosphate c 95.3 0.014 4.8E-07 61.0 5.1 25 193-217 35-59 (293)
253 1rz3_A Hypothetical protein rb 95.2 0.018 6.3E-07 56.4 5.5 41 176-216 3-44 (201)
254 2cbz_A Multidrug resistance-as 95.2 0.093 3.2E-06 52.7 10.6 23 195-217 32-54 (237)
255 1pgv_A TMD-1, tropomodulin TMD 95.1 0.0077 2.6E-07 58.1 2.2 88 570-657 33-136 (197)
256 1jr3_D DNA polymerase III, del 95.1 0.23 8E-06 53.0 14.2 155 194-384 18-183 (343)
257 1xp8_A RECA protein, recombina 95.0 0.045 1.5E-06 58.8 8.3 88 194-290 74-162 (366)
258 2pze_A Cystic fibrosis transme 95.0 0.3 1E-05 48.6 13.8 61 262-322 129-194 (229)
259 2zr9_A Protein RECA, recombina 95.0 0.042 1.4E-06 58.7 7.9 89 194-291 61-150 (349)
260 1v5w_A DMC1, meiotic recombina 94.9 0.09 3.1E-06 56.1 10.3 56 193-249 121-180 (343)
261 3io5_A Recombination and repai 94.8 0.082 2.8E-06 54.7 9.1 90 196-292 30-123 (333)
262 1u94_A RECA protein, recombina 94.8 0.046 1.6E-06 58.5 7.5 88 194-290 63-151 (356)
263 2z43_A DNA repair and recombin 94.8 0.039 1.3E-06 58.6 6.8 95 194-290 107-213 (324)
264 2i1q_A DNA repair and recombin 94.6 0.051 1.8E-06 57.6 7.5 96 193-290 97-214 (322)
265 1odf_A YGR205W, hypothetical 3 94.6 0.03 1E-06 58.1 5.3 27 191-217 28-54 (290)
266 3kl4_A SRP54, signal recogniti 94.5 0.17 6E-06 55.2 11.2 25 193-217 96-120 (433)
267 3tui_C Methionine import ATP-b 94.4 0.22 7.5E-06 53.0 11.6 63 261-323 161-229 (366)
268 3bh0_A DNAB-like replicative h 94.4 0.18 6E-06 53.1 10.8 52 194-249 68-119 (315)
269 2pjz_A Hypothetical protein ST 94.3 0.27 9.1E-06 50.1 11.6 22 195-216 31-52 (263)
270 1qhx_A CPT, protein (chloramph 94.0 0.023 7.9E-07 54.3 2.8 23 195-217 4-26 (178)
271 3cf2_A TER ATPase, transitiona 94.0 0.065 2.2E-06 63.4 7.0 155 170-351 476-661 (806)
272 3rfe_A Platelet glycoprotein I 94.0 0.076 2.6E-06 47.6 5.9 51 582-634 12-65 (130)
273 3lw7_A Adenylate kinase relate 93.9 0.027 9.1E-07 53.6 3.1 20 195-214 2-21 (179)
274 3hws_A ATP-dependent CLP prote 93.9 0.035 1.2E-06 60.1 4.4 46 172-217 16-74 (363)
275 2r44_A Uncharacterized protein 93.9 0.03 1E-06 59.7 3.7 153 171-353 27-200 (331)
276 3kb2_A SPBC2 prophage-derived 93.8 0.026 8.9E-07 53.5 2.7 23 195-217 2-24 (173)
277 1zp6_A Hypothetical protein AT 93.8 0.034 1.2E-06 53.8 3.6 24 194-217 9-32 (191)
278 3nbx_X ATPase RAVA; AAA+ ATPas 93.8 0.047 1.6E-06 61.2 5.2 43 171-217 22-64 (500)
279 3rfe_A Platelet glycoprotein I 93.7 0.093 3.2E-06 47.0 6.1 56 604-661 11-69 (130)
280 1ly1_A Polynucleotide kinase; 93.7 0.033 1.1E-06 53.2 3.2 22 195-216 3-24 (181)
281 1z47_A CYSA, putative ABC-tran 93.7 0.24 8.1E-06 52.7 10.0 22 195-216 42-63 (355)
282 3vaa_A Shikimate kinase, SK; s 93.7 0.031 1E-06 54.6 2.9 24 194-217 25-48 (199)
283 1kgd_A CASK, peripheral plasma 93.6 0.031 1.1E-06 53.5 2.9 23 195-217 6-28 (180)
284 2r6a_A DNAB helicase, replicat 93.6 1.8 6.3E-05 47.9 17.8 51 194-247 203-253 (454)
285 2it1_A 362AA long hypothetical 93.6 0.29 9.9E-06 52.2 10.5 22 195-216 30-51 (362)
286 2b8t_A Thymidine kinase; deoxy 93.6 0.023 7.8E-07 56.3 1.8 113 194-319 12-127 (223)
287 2px0_A Flagellar biosynthesis 93.4 0.11 3.9E-06 53.9 7.0 24 194-217 105-128 (296)
288 3uie_A Adenylyl-sulfate kinase 93.4 0.044 1.5E-06 53.5 3.7 24 194-217 25-48 (200)
289 3d31_A Sulfate/molybdate ABC t 93.4 0.38 1.3E-05 51.0 11.2 22 195-216 27-48 (348)
290 3rlf_A Maltose/maltodextrin im 93.4 0.28 9.7E-06 52.5 10.0 22 195-216 30-51 (381)
291 2ga8_A Hypothetical 39.9 kDa p 93.4 0.069 2.3E-06 56.4 5.1 44 174-217 2-47 (359)
292 4gp7_A Metallophosphoesterase; 93.3 0.043 1.5E-06 52.1 3.3 23 194-216 9-31 (171)
293 1vma_A Cell division protein F 93.3 0.26 9E-06 51.3 9.5 92 193-291 103-197 (306)
294 1gvn_B Zeta; postsegregational 93.3 0.074 2.5E-06 55.2 5.3 39 179-217 15-56 (287)
295 1kag_A SKI, shikimate kinase I 93.3 0.033 1.1E-06 52.9 2.4 23 195-217 5-27 (173)
296 3trf_A Shikimate kinase, SK; a 93.3 0.038 1.3E-06 53.2 2.8 24 194-217 5-28 (185)
297 2xxa_A Signal recognition part 93.2 0.46 1.6E-05 52.2 11.7 39 179-217 78-123 (433)
298 3dm5_A SRP54, signal recogniti 93.2 0.3 1E-05 53.4 10.1 24 194-217 100-123 (443)
299 1knq_A Gluconate kinase; ALFA/ 93.2 0.057 1.9E-06 51.4 3.9 24 194-217 8-31 (175)
300 1ex7_A Guanylate kinase; subst 93.1 0.038 1.3E-06 53.0 2.5 23 195-217 2-24 (186)
301 3jvv_A Twitching mobility prot 93.1 0.074 2.5E-06 56.9 5.0 113 195-323 124-236 (356)
302 1pgv_A TMD-1, tropomodulin TMD 93.1 0.048 1.6E-06 52.5 3.1 63 597-659 37-110 (197)
303 2rhm_A Putative kinase; P-loop 93.0 0.052 1.8E-06 52.5 3.4 24 194-217 5-28 (193)
304 3lda_A DNA repair protein RAD5 93.0 0.14 4.9E-06 55.5 7.2 56 194-250 178-237 (400)
305 1nks_A Adenylate kinase; therm 93.0 0.048 1.6E-06 52.7 3.1 23 195-217 2-24 (194)
306 3tqc_A Pantothenate kinase; bi 93.0 0.085 2.9E-06 55.3 5.1 43 174-216 70-114 (321)
307 2ck3_D ATP synthase subunit be 92.9 0.3 1E-05 53.4 9.5 63 182-246 142-205 (482)
308 3tr0_A Guanylate kinase, GMP k 92.9 0.051 1.7E-06 53.2 3.1 22 195-216 8-29 (205)
309 2bdt_A BH3686; alpha-beta prot 92.9 0.056 1.9E-06 52.2 3.4 22 195-216 3-24 (189)
310 3t61_A Gluconokinase; PSI-biol 92.8 0.041 1.4E-06 53.8 2.4 24 194-217 18-41 (202)
311 1j8m_F SRP54, signal recogniti 92.8 0.6 2E-05 48.5 11.4 92 194-291 98-191 (297)
312 3asz_A Uridine kinase; cytidin 92.8 0.058 2E-06 53.1 3.5 23 194-216 6-28 (211)
313 2hf9_A Probable hydrogenase ni 92.8 0.084 2.9E-06 52.5 4.7 39 177-217 23-61 (226)
314 2ffh_A Protein (FFH); SRP54, s 92.8 0.4 1.4E-05 52.3 10.3 24 194-217 98-121 (425)
315 4a1f_A DNAB helicase, replicat 92.7 0.28 9.4E-06 51.8 8.7 53 194-250 46-98 (338)
316 4eun_A Thermoresistant glucoki 92.7 0.054 1.9E-06 52.8 3.1 24 194-217 29-52 (200)
317 3tau_A Guanylate kinase, GMP k 92.7 0.053 1.8E-06 53.3 3.1 24 194-217 8-31 (208)
318 3tlx_A Adenylate kinase 2; str 92.7 0.08 2.7E-06 53.5 4.4 40 178-217 13-52 (243)
319 1um8_A ATP-dependent CLP prote 92.7 0.067 2.3E-06 58.1 4.1 47 171-217 21-95 (376)
320 3a00_A Guanylate kinase, GMP k 92.7 0.044 1.5E-06 52.8 2.3 23 195-217 2-24 (186)
321 1ye8_A Protein THEP1, hypothet 92.7 0.058 2E-06 51.5 3.1 22 196-217 2-23 (178)
322 2ze6_A Isopentenyl transferase 92.7 0.056 1.9E-06 55.0 3.2 23 195-217 2-24 (253)
323 2qt1_A Nicotinamide riboside k 92.6 0.066 2.3E-06 52.5 3.6 24 194-217 21-44 (207)
324 1kht_A Adenylate kinase; phosp 92.6 0.055 1.9E-06 52.2 3.0 23 195-217 4-26 (192)
325 1fx0_B ATP synthase beta chain 92.6 0.26 8.8E-06 54.2 8.4 62 183-246 155-217 (498)
326 2p5t_B PEZT; postsegregational 92.6 0.079 2.7E-06 53.9 4.2 41 177-217 12-55 (253)
327 2q6t_A DNAB replication FORK h 92.6 0.44 1.5E-05 52.8 10.6 66 181-250 188-253 (444)
328 2jaq_A Deoxyguanosine kinase; 92.5 0.057 1.9E-06 52.8 3.0 22 196-217 2-23 (205)
329 1sky_E F1-ATPase, F1-ATP synth 92.5 0.26 9E-06 54.1 8.4 52 183-236 141-192 (473)
330 2qor_A Guanylate kinase; phosp 92.5 0.048 1.6E-06 53.4 2.4 24 194-217 12-35 (204)
331 3iij_A Coilin-interacting nucl 92.5 0.047 1.6E-06 52.2 2.2 24 194-217 11-34 (180)
332 4akg_A Glutathione S-transfera 92.5 1.8 6E-05 58.2 17.5 46 195-244 1268-1313(2695)
333 1lvg_A Guanylate kinase, GMP k 92.4 0.05 1.7E-06 53.0 2.4 22 195-216 5-26 (198)
334 1uf9_A TT1252 protein; P-loop, 92.4 0.069 2.4E-06 52.1 3.4 24 193-216 7-30 (203)
335 1zuh_A Shikimate kinase; alpha 92.4 0.06 2E-06 50.8 2.8 24 194-217 7-30 (168)
336 2j41_A Guanylate kinase; GMP, 92.3 0.063 2.2E-06 52.6 3.0 24 194-217 6-29 (207)
337 2wsm_A Hydrogenase expression/ 92.3 0.079 2.7E-06 52.5 3.8 43 173-217 11-53 (221)
338 3e70_C DPA, signal recognition 92.3 0.094 3.2E-06 55.4 4.4 25 193-217 128-152 (328)
339 1tev_A UMP-CMP kinase; ploop, 92.3 0.07 2.4E-06 51.6 3.2 24 194-217 3-26 (196)
340 2if2_A Dephospho-COA kinase; a 92.2 0.064 2.2E-06 52.5 2.9 22 195-216 2-23 (204)
341 1jjv_A Dephospho-COA kinase; P 92.2 0.076 2.6E-06 52.0 3.5 22 195-216 3-24 (206)
342 1cke_A CK, MSSA, protein (cyti 92.2 0.065 2.2E-06 53.4 3.0 22 195-216 6-27 (227)
343 2yhs_A FTSY, cell division pro 92.2 0.55 1.9E-05 51.9 10.4 42 193-237 292-333 (503)
344 1via_A Shikimate kinase; struc 92.2 0.057 2E-06 51.3 2.4 22 196-217 6-27 (175)
345 1xjc_A MOBB protein homolog; s 92.1 0.069 2.4E-06 50.1 2.8 24 194-217 4-27 (169)
346 1htw_A HI0065; nucleotide-bind 92.1 0.084 2.9E-06 49.1 3.4 23 194-216 33-55 (158)
347 1ukz_A Uridylate kinase; trans 92.1 0.081 2.8E-06 51.7 3.5 24 194-217 15-38 (203)
348 1y63_A LMAJ004144AAA protein; 92.1 0.073 2.5E-06 51.1 3.1 23 194-216 10-32 (184)
349 3ice_A Transcription terminati 92.1 0.26 8.8E-06 52.4 7.3 52 182-235 163-215 (422)
350 2yvu_A Probable adenylyl-sulfa 92.1 0.077 2.6E-06 51.0 3.2 24 194-217 13-36 (186)
351 3ney_A 55 kDa erythrocyte memb 92.1 0.068 2.3E-06 51.6 2.8 24 194-217 19-42 (197)
352 3aez_A Pantothenate kinase; tr 92.1 0.083 2.8E-06 55.5 3.6 24 193-216 89-112 (312)
353 1znw_A Guanylate kinase, GMP k 92.0 0.076 2.6E-06 52.1 3.2 23 194-216 20-42 (207)
354 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.079 2.7E-06 54.2 3.4 24 194-217 4-27 (260)
355 2c95_A Adenylate kinase 1; tra 92.0 0.072 2.5E-06 51.6 2.9 24 194-217 9-32 (196)
356 3cm0_A Adenylate kinase; ATP-b 92.0 0.08 2.7E-06 50.8 3.2 23 194-216 4-26 (186)
357 1q57_A DNA primase/helicase; d 91.9 0.59 2E-05 52.8 10.8 53 194-249 242-294 (503)
358 1uj2_A Uridine-cytidine kinase 91.9 0.083 2.8E-06 53.7 3.4 24 193-216 21-44 (252)
359 2iyv_A Shikimate kinase, SK; t 91.9 0.056 1.9E-06 51.9 2.0 23 195-217 3-25 (184)
360 3fwy_A Light-independent proto 91.9 0.087 3E-06 55.3 3.5 24 193-216 47-70 (314)
361 1e6c_A Shikimate kinase; phosp 91.8 0.063 2.2E-06 50.8 2.2 23 195-217 3-25 (173)
362 2bbw_A Adenylate kinase 4, AK4 91.7 0.083 2.8E-06 53.5 3.1 23 194-216 27-49 (246)
363 3umf_A Adenylate kinase; rossm 91.7 0.097 3.3E-06 51.5 3.5 26 192-217 27-52 (217)
364 3p32_A Probable GTPase RV1496/ 91.7 0.15 5.1E-06 54.8 5.3 39 179-217 64-102 (355)
365 2plr_A DTMP kinase, probable t 91.7 0.087 3E-06 51.8 3.2 24 194-217 4-27 (213)
366 3b85_A Phosphate starvation-in 91.7 0.14 4.7E-06 50.2 4.5 22 195-216 23-44 (208)
367 1z6g_A Guanylate kinase; struc 91.6 0.069 2.4E-06 52.9 2.4 22 195-216 24-45 (218)
368 1g8p_A Magnesium-chelatase 38 91.6 0.081 2.8E-06 56.8 3.1 45 171-217 24-68 (350)
369 2jeo_A Uridine-cytidine kinase 91.6 0.1 3.5E-06 52.8 3.7 23 194-216 25-47 (245)
370 2pt5_A Shikimate kinase, SK; a 91.6 0.089 3E-06 49.5 3.0 22 196-217 2-23 (168)
371 1qf9_A UMP/CMP kinase, protein 91.6 0.092 3.1E-06 50.7 3.1 24 194-217 6-29 (194)
372 2bwj_A Adenylate kinase 5; pho 91.5 0.086 2.9E-06 51.2 2.9 24 194-217 12-35 (199)
373 2vli_A Antibiotic resistance p 91.5 0.07 2.4E-06 51.1 2.2 24 194-217 5-28 (183)
374 1zu4_A FTSY; GTPase, signal re 91.5 0.18 6.3E-06 53.0 5.5 25 193-217 104-128 (320)
375 3tif_A Uncharacterized ABC tra 91.5 0.13 4.6E-06 51.4 4.3 22 195-216 32-53 (235)
376 4e22_A Cytidylate kinase; P-lo 91.4 0.093 3.2E-06 53.3 3.1 23 194-216 27-49 (252)
377 3j16_B RLI1P; ribosome recycli 91.4 0.96 3.3E-05 52.0 11.9 23 194-216 103-125 (608)
378 2cdn_A Adenylate kinase; phosp 91.4 0.092 3.2E-06 51.2 3.0 24 194-217 20-43 (201)
379 2grj_A Dephospho-COA kinase; T 91.3 0.1 3.6E-06 50.3 3.2 24 193-216 11-34 (192)
380 2pbr_A DTMP kinase, thymidylat 91.3 0.096 3.3E-06 50.6 3.0 22 196-217 2-23 (195)
381 2pcj_A ABC transporter, lipopr 91.3 0.14 4.9E-06 50.8 4.2 22 195-216 31-52 (224)
382 1rj9_A FTSY, signal recognitio 91.2 0.11 3.7E-06 54.3 3.4 23 194-216 102-124 (304)
383 2onk_A Molybdate/tungstate ABC 91.2 0.14 4.9E-06 51.3 4.2 22 195-216 25-46 (240)
384 3gfo_A Cobalt import ATP-bindi 91.1 0.15 5E-06 52.4 4.3 22 195-216 35-56 (275)
385 1ls1_A Signal recognition part 91.1 0.7 2.4E-05 47.9 9.5 24 194-217 98-121 (295)
386 2i3b_A HCR-ntpase, human cance 91.1 0.092 3.1E-06 50.6 2.6 22 196-217 3-24 (189)
387 1s96_A Guanylate kinase, GMP k 91.1 0.11 3.7E-06 51.4 3.1 24 194-217 16-39 (219)
388 2f1r_A Molybdopterin-guanine d 91.0 0.066 2.3E-06 50.6 1.4 23 195-217 3-25 (171)
389 1b0u_A Histidine permease; ABC 91.0 0.15 5.3E-06 51.9 4.3 23 194-216 32-54 (262)
390 3b9q_A Chloroplast SRP recepto 91.0 0.13 4.3E-06 53.7 3.7 24 194-217 100-123 (302)
391 1gtv_A TMK, thymidylate kinase 90.9 0.058 2E-06 53.2 1.0 22 196-217 2-23 (214)
392 1nn5_A Similar to deoxythymidy 90.9 0.11 3.7E-06 51.2 3.0 24 194-217 9-32 (215)
393 4g1u_C Hemin import ATP-bindin 90.9 0.18 6.1E-06 51.5 4.6 22 195-216 38-59 (266)
394 3llm_A ATP-dependent RNA helic 90.9 0.76 2.6E-05 45.8 9.3 32 180-215 66-97 (235)
395 3vr4_D V-type sodium ATPase su 90.9 0.31 1.1E-05 53.0 6.6 92 196-290 153-258 (465)
396 3b5x_A Lipid A export ATP-bind 90.8 1.1 3.8E-05 51.5 11.9 23 194-216 369-391 (582)
397 2pt7_A CAG-ALFA; ATPase, prote 90.8 0.45 1.5E-05 50.3 7.8 106 195-320 172-277 (330)
398 2pez_A Bifunctional 3'-phospho 90.8 0.13 4.3E-06 49.1 3.2 24 194-217 5-28 (179)
399 3l0o_A Transcription terminati 90.8 0.49 1.7E-05 50.2 7.8 54 180-235 162-216 (427)
400 1m7g_A Adenylylsulfate kinase; 90.7 0.14 4.7E-06 50.4 3.5 24 194-217 25-48 (211)
401 4a74_A DNA repair and recombin 90.7 0.13 4.3E-06 51.4 3.3 45 194-238 25-73 (231)
402 2z0h_A DTMP kinase, thymidylat 90.7 0.12 4E-06 50.1 3.0 22 196-217 2-23 (197)
403 1g41_A Heat shock protein HSLU 90.7 0.16 5.5E-06 55.6 4.3 47 171-217 15-73 (444)
404 1sq5_A Pantothenate kinase; P- 90.7 0.23 7.8E-06 52.1 5.4 24 193-216 79-102 (308)
405 1mv5_A LMRA, multidrug resista 90.7 0.2 6.7E-06 50.5 4.6 23 194-216 28-50 (243)
406 2wwf_A Thymidilate kinase, put 90.6 0.12 4E-06 50.8 2.9 24 194-217 10-33 (212)
407 1aky_A Adenylate kinase; ATP:A 90.6 0.12 4E-06 51.3 2.9 24 194-217 4-27 (220)
408 1zd8_A GTP:AMP phosphotransfer 90.6 0.12 4E-06 51.6 2.9 24 194-217 7-30 (227)
409 3zvl_A Bifunctional polynucleo 90.5 0.46 1.6E-05 52.1 7.8 25 193-217 257-281 (416)
410 2ff7_A Alpha-hemolysin translo 90.5 0.19 6.3E-06 50.8 4.3 22 195-216 36-57 (247)
411 2olj_A Amino acid ABC transpor 90.5 0.18 6.3E-06 51.3 4.3 23 194-216 50-72 (263)
412 1vht_A Dephospho-COA kinase; s 90.5 0.15 5E-06 50.5 3.5 23 194-216 4-26 (218)
413 1ji0_A ABC transporter; ATP bi 90.4 0.19 6.5E-06 50.5 4.3 22 195-216 33-54 (240)
414 2f6r_A COA synthase, bifunctio 90.4 0.15 5E-06 52.7 3.5 24 193-216 74-97 (281)
415 2ehv_A Hypothetical protein PH 90.4 0.13 4.5E-06 52.0 3.1 23 194-216 30-52 (251)
416 1sgw_A Putative ABC transporte 90.4 0.16 5.6E-06 49.8 3.7 22 195-216 36-57 (214)
417 3qf4_A ABC transporter, ATP-bi 90.4 0.6 2E-05 53.8 9.0 23 194-216 369-391 (587)
418 1g6h_A High-affinity branched- 90.3 0.19 6.7E-06 51.0 4.3 22 195-216 34-55 (257)
419 3fb4_A Adenylate kinase; psych 90.3 0.13 4.6E-06 50.7 3.0 22 196-217 2-23 (216)
420 2ixe_A Antigen peptide transpo 90.3 0.2 6.7E-06 51.4 4.3 23 194-216 45-67 (271)
421 3nwj_A ATSK2; P loop, shikimat 90.3 0.11 3.6E-06 52.6 2.2 22 195-216 49-70 (250)
422 1zak_A Adenylate kinase; ATP:A 90.2 0.11 3.8E-06 51.5 2.4 24 194-217 5-28 (222)
423 3d3q_A TRNA delta(2)-isopenten 90.2 0.14 4.9E-06 53.8 3.2 23 195-217 8-30 (340)
424 1np6_A Molybdopterin-guanine d 90.2 0.14 4.7E-06 48.5 2.8 24 194-217 6-29 (174)
425 1tue_A Replication protein E1; 90.2 0.19 6.6E-06 48.3 3.8 37 180-217 45-81 (212)
426 2v54_A DTMP kinase, thymidylat 90.1 0.14 4.8E-06 49.9 3.0 24 194-217 4-27 (204)
427 2og2_A Putative signal recogni 90.1 0.17 5.7E-06 54.0 3.7 24 194-217 157-180 (359)
428 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.6E-06 52.1 2.0 21 195-215 28-48 (231)
429 4a82_A Cystic fibrosis transme 90.0 0.85 2.9E-05 52.4 9.9 23 194-216 367-389 (578)
430 3a8t_A Adenylate isopentenyltr 90.0 0.17 5.8E-06 53.0 3.6 24 194-217 40-63 (339)
431 3dl0_A Adenylate kinase; phosp 90.0 0.15 5E-06 50.4 3.0 22 196-217 2-23 (216)
432 3k1j_A LON protease, ATP-depen 89.9 0.19 6.5E-06 58.3 4.4 43 171-217 41-83 (604)
433 2yz2_A Putative ABC transporte 89.9 0.22 7.6E-06 50.9 4.3 22 195-216 34-55 (266)
434 3r20_A Cytidylate kinase; stru 89.8 0.16 5.3E-06 50.6 3.0 24 194-217 9-32 (233)
435 3ake_A Cytidylate kinase; CMP 89.8 0.16 5.4E-06 49.7 3.0 21 196-216 4-24 (208)
436 2d2e_A SUFC protein; ABC-ATPas 89.6 0.17 5.8E-06 51.2 3.2 22 195-216 30-51 (250)
437 3exa_A TRNA delta(2)-isopenten 89.5 0.18 6.1E-06 52.2 3.2 24 194-217 3-26 (322)
438 2zej_A Dardarin, leucine-rich 89.5 0.17 5.8E-06 48.4 2.9 22 196-217 4-25 (184)
439 2ihy_A ABC transporter, ATP-bi 89.5 0.24 8.3E-06 50.9 4.3 22 195-216 48-69 (279)
440 3crm_A TRNA delta(2)-isopenten 89.5 0.18 6E-06 52.7 3.2 23 195-217 6-28 (323)
441 2zu0_C Probable ATP-dependent 89.5 0.17 6E-06 51.7 3.1 22 195-216 47-68 (267)
442 1fzq_A ADP-ribosylation factor 89.3 0.25 8.4E-06 47.1 4.0 25 193-217 15-39 (181)
443 2ghi_A Transport protein; mult 89.3 0.18 6.3E-06 51.3 3.1 22 195-216 47-68 (260)
444 1oix_A RAS-related protein RAB 89.3 0.18 6.3E-06 48.5 3.0 24 194-217 29-52 (191)
445 2qi9_C Vitamin B12 import ATP- 89.3 0.19 6.3E-06 50.8 3.1 22 195-216 27-48 (249)
446 2xb4_A Adenylate kinase; ATP-b 89.2 0.18 6.3E-06 50.0 3.0 22 196-217 2-23 (223)
447 2wji_A Ferrous iron transport 89.1 0.23 8E-06 46.4 3.6 23 195-217 4-26 (165)
448 1svm_A Large T antigen; AAA+ f 89.1 0.31 1E-05 52.4 4.8 36 181-216 156-191 (377)
449 1yrb_A ATP(GTP)binding protein 89.1 0.22 7.4E-06 50.8 3.5 25 193-217 13-37 (262)
450 1pzn_A RAD51, DNA repair and r 89.1 0.41 1.4E-05 51.0 5.8 47 193-239 130-180 (349)
451 2nq2_C Hypothetical ABC transp 89.0 0.2 6.7E-06 50.8 3.1 22 195-216 32-53 (253)
452 3be4_A Adenylate kinase; malar 88.9 0.19 6.5E-06 49.6 2.9 23 195-217 6-28 (217)
453 1e4v_A Adenylate kinase; trans 88.9 0.19 6.6E-06 49.4 2.9 22 196-217 2-23 (214)
454 2vp4_A Deoxynucleoside kinase; 88.7 0.21 7.2E-06 49.8 3.1 23 194-216 20-42 (230)
455 3foz_A TRNA delta(2)-isopenten 88.7 0.22 7.6E-06 51.4 3.2 24 194-217 10-33 (316)
456 4eaq_A DTMP kinase, thymidylat 88.6 0.37 1.3E-05 48.0 4.7 24 194-217 26-49 (229)
457 1ltq_A Polynucleotide kinase; 88.6 0.22 7.4E-06 52.1 3.2 22 195-216 3-24 (301)
458 2qmh_A HPR kinase/phosphorylas 88.6 0.26 8.7E-06 47.2 3.3 23 195-217 35-57 (205)
459 2dyk_A GTP-binding protein; GT 88.6 0.25 8.6E-06 45.6 3.4 23 195-217 2-24 (161)
460 3thx_A DNA mismatch repair pro 88.5 1.7 5.7E-05 52.5 11.1 21 194-214 662-682 (934)
461 3sr0_A Adenylate kinase; phosp 88.5 0.23 7.7E-06 48.5 3.0 79 196-289 2-83 (206)
462 2r9v_A ATP synthase subunit al 88.4 1.2 4.1E-05 49.0 8.9 50 182-236 164-215 (515)
463 1tq4_A IIGP1, interferon-induc 88.4 0.22 7.6E-06 54.1 3.2 35 182-216 57-91 (413)
464 2f9l_A RAB11B, member RAS onco 88.4 0.22 7.5E-06 48.3 2.9 24 194-217 5-28 (199)
465 1a7j_A Phosphoribulokinase; tr 88.4 0.14 4.7E-06 53.2 1.4 23 194-216 5-27 (290)
466 2eyu_A Twitching motility prot 88.4 0.25 8.5E-06 50.3 3.4 111 194-321 25-136 (261)
467 1ak2_A Adenylate kinase isoenz 88.3 0.22 7.7E-06 49.7 3.0 24 194-217 16-39 (233)
468 3nh6_A ATP-binding cassette SU 88.3 0.27 9.1E-06 51.2 3.5 23 194-216 80-102 (306)
469 2v9p_A Replication protein E1; 88.1 0.24 8.3E-06 51.4 3.1 23 194-216 126-148 (305)
470 3cmu_A Protein RECA, recombina 88.1 0.65 2.2E-05 60.1 7.6 89 193-290 1426-1515(2050)
471 2wjg_A FEOB, ferrous iron tran 88.0 0.3 1E-05 46.6 3.6 24 194-217 7-30 (188)
472 2dr3_A UPF0273 protein PH0284; 87.9 0.28 9.6E-06 49.3 3.4 39 194-234 23-61 (247)
473 2ce2_X GTPase HRAS; signaling 87.8 0.25 8.5E-06 45.8 2.8 22 196-217 5-26 (166)
474 2iw3_A Elongation factor 3A; a 87.8 3.3 0.00011 49.9 13.0 123 195-322 462-609 (986)
475 3lv8_A DTMP kinase, thymidylat 87.8 0.53 1.8E-05 46.9 5.2 37 194-231 27-63 (236)
476 2v3c_C SRP54, signal recogniti 87.8 0.3 1E-05 53.7 3.7 24 194-217 99-122 (432)
477 1u0j_A DNA replication protein 87.7 0.46 1.6E-05 48.0 4.7 37 181-217 91-127 (267)
478 3dzd_A Transcriptional regulat 87.7 1.1 3.6E-05 48.3 8.0 47 171-217 129-175 (368)
479 1nlf_A Regulatory protein REPA 87.6 0.26 9.1E-06 50.8 3.1 23 194-216 30-52 (279)
480 3bgw_A DNAB-like replicative h 87.5 1.6 5.3E-05 48.2 9.4 51 194-248 197-247 (444)
481 1cr0_A DNA primase/helicase; R 87.5 0.27 9.1E-06 51.3 3.1 38 194-233 35-73 (296)
482 3sop_A Neuronal-specific septi 87.5 0.27 9.3E-06 50.3 3.0 21 196-216 4-24 (270)
483 3gqb_B V-type ATP synthase bet 87.5 0.48 1.6E-05 51.5 5.0 92 196-290 149-261 (464)
484 1z2a_A RAS-related protein RAB 87.5 0.27 9.4E-06 45.7 2.9 24 194-217 5-28 (168)
485 2nzj_A GTP-binding protein REM 87.5 0.29 1E-05 46.0 3.1 24 194-217 4-27 (175)
486 2lkc_A Translation initiation 87.5 0.39 1.3E-05 45.2 4.0 25 193-217 7-31 (178)
487 3end_A Light-independent proto 87.4 0.32 1.1E-05 51.0 3.6 40 193-234 40-79 (307)
488 2ck3_A ATP synthase subunit al 87.4 1.1 3.8E-05 49.4 7.9 54 182-236 151-210 (510)
489 3fvq_A Fe(3+) IONS import ATP- 87.3 0.4 1.4E-05 51.0 4.2 22 195-216 31-52 (359)
490 3con_A GTPase NRAS; structural 87.3 0.28 9.6E-06 47.0 2.9 23 195-217 22-44 (190)
491 2qe7_A ATP synthase subunit al 87.3 1.2 4.2E-05 48.9 8.2 49 183-236 152-202 (502)
492 2j37_W Signal recognition part 87.3 0.48 1.6E-05 53.0 5.0 25 193-217 100-124 (504)
493 4edh_A DTMP kinase, thymidylat 87.3 0.78 2.7E-05 44.9 6.1 24 194-217 6-29 (213)
494 2bbs_A Cystic fibrosis transme 87.3 0.29 9.8E-06 50.6 3.0 61 262-322 158-223 (290)
495 2c61_A A-type ATP synthase non 87.2 0.73 2.5E-05 50.4 6.3 62 183-245 142-206 (469)
496 2ocp_A DGK, deoxyguanosine kin 87.1 0.32 1.1E-05 48.9 3.3 24 194-217 2-25 (241)
497 4tmk_A Protein (thymidylate ki 87.1 0.66 2.3E-05 45.4 5.4 23 195-217 4-26 (213)
498 2qm8_A GTPase/ATPase; G protei 87.0 0.52 1.8E-05 50.0 5.0 35 182-216 43-77 (337)
499 2gj8_A MNME, tRNA modification 87.0 0.32 1.1E-05 45.9 3.0 23 195-217 5-27 (172)
500 3q72_A GTP-binding protein RAD 87.0 0.3 1E-05 45.4 2.8 22 196-217 4-25 (166)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-47 Score=446.87 Aligned_cols=321 Identities=16% Similarity=0.210 Sum_probs=258.5
Q ss_pred ccchhhHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhc--CccccCCCCceEEEEeCCCC--CHHHHHHHHHHH
Q 047503 174 VGIESARDILIGWLVNG-RKQRSVVALVGQGGIGKTTLAGKLFN--NQYVMNHFDCRAWITVGREC--MKKDLLIKMIKE 248 (920)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~ 248 (920)
|||++++++|.++|..+ ++..++|+|+||||+||||||++||+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 34589999999999999999999998 67899999999999999985 889999999999
Q ss_pred HhhhccCCccccCCcCCHHHHHHHHHHHhcCC-cEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcccC
Q 047503 249 FHQLTGQSALGEMNNMEEKDLIIAVRQYLHDK-NYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCKQS 327 (920)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 327 (920)
++..............+.+.+...+++.|+++ ||||||||||+.+.+ .+.. .+||+||||||+..++..+...
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 97652211112234445678899999999996 999999999998754 2111 1699999999999999876422
Q ss_pred CccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHHhccC
Q 047503 328 SFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLEGLG 407 (920)
Q Consensus 328 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~~~~ 407 (920)
..+|++++|+.++||+||.+.+|... .++.+.+++++|+++|+|+|||++++|+.|+.+ ..+|...+....
T Consensus 285 --~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~l~~~l 355 (549)
T 2a5y_B 285 --CEFIEVTSLEIDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQLNNKL 355 (549)
T ss_dssp --EEEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHHHHHHH
T ss_pred --CeEEECCCCCHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHHHHhHHHh
Confidence 26799999999999999999987642 247888999999999999999999999999765 223433333222
Q ss_pred CCCCCCCchhhHHHHhhhccCCChhhHHHHHh-----------hhccCCCCceechhhHHHHHHHc--CCccCCC-CCCh
Q 047503 408 SKLGSDPHLKICSRVLSEGYHDLPHHLKSCLL-----------YFGLFPQGYSISCARLIRLWIAE--GFVPYST-RPPS 473 (920)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl-----------~~a~fp~~~~i~~~~li~~W~a~--g~i~~~~-~~~~ 473 (920)
+.. ....+..++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+.
T Consensus 356 ~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 356 ESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred hcc----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 211 1235788999999999999999999 999999999998 8999999 9997655 6677
Q ss_pred HHHHHHHHHHHHhcccccccc--ccCceEecHHHHHHHHHHhhccCc
Q 047503 474 EQLGEEYLSELIDRSLVHVSR--RARSCRVHDLMHEIILEKTKDLGF 518 (920)
Q Consensus 474 e~~~~~~l~~L~~~sll~~~~--~~~~~~mHdlv~~~~~~~~~~e~~ 518 (920)
+++++ ||++|+++||++... ...+|+|||++|++|++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 999999999999865 346799999999999998877643
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.1e-39 Score=376.98 Aligned_cols=292 Identities=17% Similarity=0.202 Sum_probs=235.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDC-RAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34999999999999998743 3789999999999999999999998778999986 999999999999888888888765
Q ss_pred hhccCCccccCC-----cCCHHHHHHHHHHHh---cCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 251 QLTGQSALGEMN-----NMEEKDLIIAVRQYL---HDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 251 ~~~~~~~~~~~~-----~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
...... ..... ..+.+.+...+++.| .++|+||||||||+.+.|+.+. .||+||||||++.++.
T Consensus 208 ~i~~~~-~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSS-TTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hcCccc-ccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 431110 00000 012345667777766 6799999999999988887652 5899999999999886
Q ss_pred hcccCCccceeecC------CCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCCh
Q 047503 323 FCKQSSFVQVHELE------ALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSV 396 (920)
Q Consensus 323 ~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~ 396 (920)
.+... ..+.++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|+.|+.+..+.
T Consensus 280 ~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 280 FLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--------PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred hcCCC---eEEEecCccccCCcCHHHHHHHHHHHc-CCC--------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 44322 356666 999999999999984 221 11233333 9999999999999999886567
Q ss_pred HHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhH-HHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCChHH
Q 047503 397 SEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHL-KSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQ 475 (920)
Q Consensus 397 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~l-k~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~ 475 (920)
++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++
T Consensus 345 eeW~~~------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------ee 402 (1221)
T 1vt4_I 345 DNWKHV------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KS 402 (1221)
T ss_dssp HHHHHC------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SH
T ss_pred HHHhcC------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HH
Confidence 889763 12579999999999999999 99999999999999999999999998877 24
Q ss_pred HHHHHHHHHHhccccccccccCceEecHHHHHHH
Q 047503 476 LGEEYLSELIDRSLVHVSRRARSCRVHDLMHEII 509 (920)
Q Consensus 476 ~~~~~l~~L~~~sll~~~~~~~~~~mHdlv~~~~ 509 (920)
.++.+|++|+++||++.......|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 5889999999999999865567899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.1e-38 Score=404.18 Aligned_cols=316 Identities=21% Similarity=0.296 Sum_probs=251.9
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-cCCC-CceEEEEeCCCCCH--HHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV-MNHF-DCRAWITVGRECMK--KDLLIK 244 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~--~~~~~~ 244 (920)
....||||++++++|.++|.....+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+. ...+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 3567999999999999999876667899999999999999999999998543 4555 67889999986543 334566
Q ss_pred HHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCC--cEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 245 MIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDK--NYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
++..+...... ......+.+.+...++..+.++ |+||||||+|+.+.|..+ .+||+||||||++.++.
T Consensus 202 ~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 202 LCMRLDQEESF---SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHTTTCTT---CSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHhhhhccc---ccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 66666543211 1122345688899999999877 999999999998776654 56899999999999985
Q ss_pred hcccCCccceeecCC-CCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHH
Q 047503 323 FCKQSSFVQVHELEA-LPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRR 401 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~ 401 (920)
.+... ...+.+.+ |+++++++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+.. .|..
T Consensus 272 ~~~~~--~~~~~~~~~l~~~~a~~l~~~~~~~~------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~ 340 (1249)
T 3sfz_A 272 SVMGP--KHVVPVESGLGREKGLEILSLFVNMK------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAY 340 (1249)
T ss_dssp TCCSC--BCCEECCSSCCHHHHHHHHHHHHTSC------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHH
T ss_pred hhcCC--ceEEEecCCCCHHHHHHHHHHhhCCC------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh---HHHH
Confidence 43222 26789986 99999999999988433 2345567999999999999999999999987753 5766
Q ss_pred HHhccCCCC----C--CCCchhhHHHHhhhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCChHH
Q 047503 402 SLEGLGSKL----G--SDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQ 475 (920)
Q Consensus 402 ~~~~~~~~~----~--~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~ 475 (920)
.++.+.... . .....+.+..++.+||+.||++.|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 665553221 1 122235799999999999999999999999999999999999999999553 57
Q ss_pred HHHHHHHHHHhccccccccc--cCceEecHHHHHHHHHHhhcc
Q 047503 476 LGEEYLSELIDRSLVHVSRR--ARSCRVHDLMHEIILEKTKDL 516 (920)
Q Consensus 476 ~~~~~l~~L~~~sll~~~~~--~~~~~mHdlv~~~~~~~~~~e 516 (920)
.++.++++|+++||++.... ..+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 78999999999999997652 336999999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=340.70 Aligned_cols=312 Identities=21% Similarity=0.328 Sum_probs=239.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-cCCC-CceEEEEeCCCCCHHHHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV-MNHF-DCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
.+.||||+.++++|.++|.....+.++|+|+||||+||||||++++++..+ ..+| +.++|++++.. +...++..+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 457999999999999999865556899999999999999999999998655 7889 58999999875 44444444433
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcC--CcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhhcc
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHD--KNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADFCK 325 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 325 (920)
....-............+.+.+...+++.+.+ +++||||||+|+...++. + ..|++||||||+..++..+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHhcC
Confidence 22111000111112234567788888888876 789999999998665433 2 45899999999998876543
Q ss_pred cCCccceeec---CCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHH
Q 047503 326 QSSFVQVHEL---EALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRS 402 (920)
Q Consensus 326 ~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~ 402 (920)
. ..+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+|||+..+|+.++... ..|...
T Consensus 275 ~----~~~~v~~l~~L~~~ea~~L~~~~~~~~------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~---~~w~~~ 341 (591)
T 1z6t_A 275 G----PKYVVPVESSLGKEKGLEILSLFVNMK------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP---NRWEYY 341 (591)
T ss_dssp S----CEEEEECCSSCCHHHHHHHHHHHHTSC------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST---TCHHHH
T ss_pred C----CceEeecCCCCCHHHHHHHHHHHhCCC------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc---hhHHHH
Confidence 2 33443 6899999999999988642 123346789999999999999999999998763 368877
Q ss_pred HhccCCCC----CC--CCchhhHHHHhhhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCccCCCCCChHHH
Q 047503 403 LEGLGSKL----GS--DPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVPYSTRPPSEQL 476 (920)
Q Consensus 403 ~~~~~~~~----~~--~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~ 476 (920)
++.+.... .. ......+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++ .+.
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~ 410 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEE 410 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHH
Confidence 76554321 11 12235789999999999999999999999999999999999999999442 356
Q ss_pred HHHHHHHHHhcccccccc--ccCceEecHHHHHHHHHHh
Q 047503 477 GEEYLSELIDRSLVHVSR--RARSCRVHDLMHEIILEKT 513 (920)
Q Consensus 477 ~~~~l~~L~~~sll~~~~--~~~~~~mHdlv~~~~~~~~ 513 (920)
++.++.+|+++||++... ....|+||++++++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 788999999999998654 2347999999999998874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.2e-25 Score=273.64 Aligned_cols=339 Identities=17% Similarity=0.171 Sum_probs=189.4
Q ss_pred CCeeEEEEecCccc---cccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCC-cCcccccCcc-cCce
Q 047503 531 TKTRRISINQSLNN---VLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIE-FLPEEVGNLF-HLHY 605 (920)
Q Consensus 531 ~~~r~lsl~~~~~~---~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~-~L~~ 605 (920)
.++++|.+..+... ......++.|++|.+.++.. ...++...+.++++|++|++++|.+. .+|..++++. +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE-EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc-cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 44555555544331 11233445555555443321 11223333555666666666666655 5555555555 5666
Q ss_pred eeecCCCcc-ccCccccC--CCCCcEEeecCCccc-ccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccc
Q 047503 606 LSVRNTKVK-VLPKSIGR--LLNLQTLDLKHSLVT-QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKL 681 (920)
Q Consensus 606 L~L~~~~i~-~lp~~i~~--L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L 681 (920)
|++++|.+. .+|..++. +++|++|++++|.++ .+|..+.++++|++|++++| .....+|..++.+++|+.|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-----EEESCCCGGGGGCTTCCEE
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-----cccCcccHHHhcCCCCCEE
Confidence 666665544 34444444 556666666666555 45556666666666666664 2222445556666666666
Q ss_pred cccccC--chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc
Q 047503 682 YIVQAN--STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS 759 (920)
Q Consensus 682 ~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 759 (920)
++..+. ...+..+..+++|+.|+++.+.... .++..+..+++|+.|++++|...+.++ ..+...+ +|+.|+|+++
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~-~L~~L~L~~N 524 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLE-NLAILKLSNN 524 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCT-TCCEEECCSS
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCC-hHHhcCC-CCCEEECCCC
Confidence 666555 2344555666666666666333222 234445566666666666665543322 2333444 6666666665
Q ss_pred C--CCCCccccCCCCcceEEEEeeccCCCccc------------------------------------------------
Q 047503 760 M--KNLPDWIFKLKNLVRIGLYWSELTNDPMN------------------------------------------------ 789 (920)
Q Consensus 760 ~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~------------------------------------------------ 789 (920)
. +.+|..+..+++|+.|+|++|.+.+..+.
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 2 24566666666666666666655432221
Q ss_pred ----------------------ccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccE
Q 047503 790 ----------------------VLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRE 847 (920)
Q Consensus 790 ----------------------~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 847 (920)
.++.+++|+.|+|++|.+...++...+.+++|+.|+++++.....+|...+.+++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 2233456666666666665555555566667777777766555566666666777777
Q ss_pred EEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 848 LKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 848 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
|++++|...+.+|..+..+++|++|++++++
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 7777776555667677777777777776664
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.4e-25 Score=263.47 Aligned_cols=346 Identities=17% Similarity=0.116 Sum_probs=205.0
Q ss_pred cCCCeeEEEEecCccccc---cccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCc
Q 047503 529 CCTKTRRISINQSLNNVL---EWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLH 604 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~---~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~ 604 (920)
.+..+++|.+.++..... ....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+ |..++++.+|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 346788888887765221 345667777777665532 234455677888888888888888766 67788888888
Q ss_pred eeeecCCCccccC-ccccCCCCCcEEeecCCccc--ccchhhcccccCCeEeecccCCCcccc-----------------
Q 047503 605 YLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVT--QLPVEIKNLKKLRYLLVYHSDNGTHER----------------- 664 (920)
Q Consensus 605 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~----------------- 664 (920)
+|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.......
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 8888888887766 56778888888888888776 467778888888888887764321000
Q ss_pred -----cccccC---------------------------------------------------------------------
Q 047503 665 -----GVKIQE--------------------------------------------------------------------- 670 (920)
Q Consensus 665 -----~~~~p~--------------------------------------------------------------------- 670 (920)
...++.
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 000010
Q ss_pred ----------------------------------ccCCcccCccccccccCc---------------------hhHHhcc
Q 047503 671 ----------------------------------GFGSLTDLQKLYIVQANS---------------------TILKELR 695 (920)
Q Consensus 671 ----------------------------------~i~~l~~L~~L~~~~~~~---------------------~~~~~l~ 695 (920)
.++.+++|++|++..+.. .....+.
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred ccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhc
Confidence 111122222222222210 0001233
Q ss_pred cCCCCcEEEEEecCCcch-hHHHHhccCCCCCEEEEeeCCCCcc-----------------------cccccCCCCcccc
Q 047503 696 KLRQLRKLGIQLTNDDGK-NLCASIADMENLESLTVESTSREET-----------------------FDIQSLGSPPQYL 751 (920)
Q Consensus 696 ~l~~L~~L~l~~~~~~~~-~l~~~l~~~~~L~~L~L~~~~~~~~-----------------------~~l~~l~~~~~~L 751 (920)
.+++|+.|+++.+..... ..+..+..+++|+.|++++|..... .+...+..++ +|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc-cC
Confidence 456666666663322211 1134456667777777776643221 1112223333 55
Q ss_pred cEEEEeccC--CCCCccccCCCCcceEEEEeeccCCC-cccccCCCcccceeEEecccCCCeeeEccCCccccceeeecc
Q 047503 752 EHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTND-PMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLD 828 (920)
Q Consensus 752 ~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 828 (920)
+.|+++++. +..|..+..+++|+.|+|++|.+.+. .+..++.+++|+.|+|++|.+....+.....+++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 555555542 23455556666666666666666552 445566667777777776655544444455667777777777
Q ss_pred CCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCC-CCCEEEEecCh
Q 047503 829 LKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLR-NLEILKFCGML 878 (920)
Q Consensus 829 ~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~ 878 (920)
|......+...+.+++|+.|+|++|. +..+|..+..++ +|+.|+++++|
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 65444445556677777777777776 556777777776 47888877754
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.5e-25 Score=266.36 Aligned_cols=333 Identities=16% Similarity=0.193 Sum_probs=225.0
Q ss_pred cCCCeeEEEEecCccc-------------------ccc-cc--CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEcc
Q 047503 529 CCTKTRRISINQSLNN-------------------VLE-WT--EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFE 586 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~-------------------~~~-~~--~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~ 586 (920)
...+++.|.+..+... ++. .. .+++|+.|.+.++... ...+..+.++++|++|+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--ccChHHHhcCCCCCEEECc
Confidence 3467888888876542 222 22 5677777777665431 2334556778888888888
Q ss_pred CCC-CC--cCcccccCc------ccCceeeecCCCccccCc--cccCCCCCcEEeecCCccc-ccchhhcccccCCeEee
Q 047503 587 DAP-IE--FLPEEVGNL------FHLHYLSVRNTKVKVLPK--SIGRLLNLQTLDLKHSLVT-QLPVEIKNLKKLRYLLV 654 (920)
Q Consensus 587 ~~~-~~--~lp~~i~~l------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l 654 (920)
+|. ++ .+|..++.+ .+|++|++++|.+..+|. .++++++|++|++++|.++ .+| .+..+++|++|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 887 76 377777776 788888888888888887 7888888888888888777 777 7788888888888
Q ss_pred cccCCCcccccccccCccCCccc-CccccccccC-chhHHhcccC--CCCcEEEEEecCCcchhHHHHhc-------cCC
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTD-LQKLYIVQAN-STILKELRKL--RQLRKLGIQLTNDDGKNLCASIA-------DME 723 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~-L~~L~~~~~~-~~~~~~l~~l--~~L~~L~l~~~~~~~~~l~~~l~-------~~~ 723 (920)
++|. ...+|..++.+++ |++|++..+. ...+..+..+ ++|+.|+++.+.... ..+..+. .++
T Consensus 361 ~~N~------l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 361 AYNQ------ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp CSSE------EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSCCCCC
T ss_pred CCCc------cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC-cchhhhcccccccccCC
Confidence 8752 2367777778887 8888887776 3333334433 367777777443322 1233344 556
Q ss_pred CCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccC--------CCCcceEEEEeeccCCCcccccC--
Q 047503 724 NLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFK--------LKNLVRIGLYWSELTNDPMNVLQ-- 792 (920)
Q Consensus 724 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~--------l~~L~~L~L~~~~l~~~~~~~l~-- 792 (920)
+|+.|++++|.... ++...+...+ +|+.|+|+++ ...+|..+.. +++|+.|+|++|.+. ..+..+.
T Consensus 434 ~L~~L~Ls~N~l~~-lp~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 434 NVSSINLSNNQISK-FPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CEEEEECCSSCCCS-CCTHHHHTTC-CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CCCEEECcCCccCc-CCHHHHccCC-CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 78888888876652 2212222344 7888888876 3456554322 227888888888877 3444554
Q ss_pred CCcccceeEEecccCCCeeeEccCCccccceeeecc------CCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCC
Q 047503 793 ALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLD------LKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHL 866 (920)
Q Consensus 793 ~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l 866 (920)
.+++|+.|+|++|.+.. ++.....+++|+.|++++ +.....++...+.+++|+.|+|++|.. +.+|..+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-- 586 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-- 586 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--
Confidence 78888888888877665 666666788888888854 333455565667788888888888874 77887665
Q ss_pred CCCCEEEEecCh
Q 047503 867 RNLEILKFCGML 878 (920)
Q Consensus 867 ~~L~~L~l~~~~ 878 (920)
++|+.|++++||
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 788888888886
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8.8e-25 Score=240.66 Aligned_cols=302 Identities=16% Similarity=0.206 Sum_probs=235.5
Q ss_pred CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEE
Q 047503 550 EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTL 629 (920)
Q Consensus 550 ~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 629 (920)
.++++++|.+.++.... ++. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~---~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS---IQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCC---CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCcccc---chh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 45666677666544321 222 6788999999999999988877 889999999999999998876 58899999999
Q ss_pred eecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecC
Q 047503 630 DLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTN 709 (920)
Q Consensus 630 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 709 (920)
++++|.+..+|. +..+++|++|++++|.. . ..+..++.+++|++|++..+.......+..+++|+.|+++.+.
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~-----~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHN-----L-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTT-----C-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCC-----c-ccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc
Confidence 999999998887 88999999999998632 2 2233478899999999988874444448889999999988443
Q ss_pred CcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcc
Q 047503 710 DDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPM 788 (920)
Q Consensus 710 ~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~ 788 (920)
... ++. +..+++|+.|++++|....... +..++ +|++|+++++ ...+|. +..+++|+.|+|++|.+...
T Consensus 189 l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 189 IED--ISP-LASLTSLHYFTAYVNQITDITP---VANMT-RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCC--CGG-GGGCTTCCEEECCSSCCCCCGG---GGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--
T ss_pred ccc--ccc-ccCCCccceeecccCCCCCCch---hhcCC-cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--
Confidence 322 121 7788999999999987654322 45556 9999999987 455665 88899999999999988753
Q ss_pred cccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCC
Q 047503 789 NVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRN 868 (920)
Q Consensus 789 ~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~ 868 (920)
+.+..+++|+.|++++|.+.+. + ....+++|+.|++.+|......+...+.+++|+.|++++|+ +..+++ +..+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~ 334 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSK 334 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTT
T ss_pred hhHhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhc
Confidence 6788999999999999876643 2 34678999999999986544444456689999999999998 555554 889999
Q ss_pred CCEEEEecCh
Q 047503 869 LEILKFCGML 878 (920)
Q Consensus 869 L~~L~l~~~~ 878 (920)
|++|++++|+
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 9999999997
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.5e-25 Score=272.70 Aligned_cols=295 Identities=18% Similarity=0.166 Sum_probs=167.5
Q ss_pred hccCCeeeEEEccCCCCC-cCcccccCcccCceeeecCCCcc-ccCccccCC-CCCcEEeecCCccc-ccchhhcccccC
Q 047503 574 VAEFKLMKVLDFEDAPIE-FLPEEVGNLFHLHYLSVRNTKVK-VLPKSIGRL-LNLQTLDLKHSLVT-QLPVEIKNLKKL 649 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~l~-~lp~~i~~l~~L 649 (920)
+.++++|++|++++|.+. .+|.. .+.+|++|++++|.+. .+|..+..+ ++|++|++++|.++ .+|..+.++++|
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 344444444444444433 22211 3444444444444443 444444332 44444444444443 334444444444
Q ss_pred CeEeecccCCCcccccccccCc-cCCcccCccccccccC--chhHHhcccCC-CCcEEEEEecCCcchhHHHHhcc--CC
Q 047503 650 RYLLVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQAN--STILKELRKLR-QLRKLGIQLTNDDGKNLCASIAD--ME 723 (920)
Q Consensus 650 ~~L~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~l~~~l~~--~~ 723 (920)
++|++++|. ....+|.. ++.+++|++|++..+. ...+..+..++ +|+.|+++.+...+ ..+..+.. ++
T Consensus 321 ~~L~L~~n~-----l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~-~~~~~~~~~~~~ 394 (768)
T 3rgz_A 321 ESLALSSNN-----FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQNPKN 394 (768)
T ss_dssp CEEECCSSE-----EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE-ECCTTTTCSTTC
T ss_pred cEEECCCCc-----ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC-CcChhhhhcccC
Confidence 444444431 11123322 4444444444444443 12333333333 44444444221111 01111222 44
Q ss_pred CCCEEEEeeCCCCcccccccCCCCcccccEEEEecc--CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeE
Q 047503 724 NLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS--MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELR 801 (920)
Q Consensus 724 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~ 801 (920)
+|+.|++++|...+.. ...+..++ +|+.|+++++ .+.+|..+..+++|+.|+|++|.+.+..+..++.+++|+.|+
T Consensus 395 ~L~~L~L~~n~l~~~~-p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKI-PPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCEEECCSSEEEEEC-CGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CccEEECCCCcccccc-CHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5666666655443222 12344445 7777777776 246677777778888888888877777777777888888888
Q ss_pred EecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 802 LRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 802 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
|++|.+...++.....+++|++|++.+|.....++...+.+++|+.|+|++|...+.+|..+..+++|+.|++++|+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88777776666666778888888888877665677777788888888888888777888888888888888888765
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=243.57 Aligned_cols=307 Identities=17% Similarity=0.158 Sum_probs=246.9
Q ss_pred cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCc-cccCCCCC
Q 047503 549 TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNL 626 (920)
Q Consensus 549 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L 626 (920)
..+++++.+.+.++.. ..+++..|..+++|++|++++|.+..++ ..++.+.+|++|++++|.+..+|. .++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 4567888888766543 3355667899999999999999998765 589999999999999999998865 57899999
Q ss_pred cEEeecCCcccccchh-hcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEE
Q 047503 627 QTLDLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGI 705 (920)
Q Consensus 627 ~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l 705 (920)
++|++++|.++.+|.. +.++++|++|++++|.. ....|..++.+++|++|++..+..... .+..+++|+.|++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----CBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEEC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-----CccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeec
Confidence 9999999999999987 58999999999999743 223345588999999999988873322 4677889999998
Q ss_pred EecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCC
Q 047503 706 QLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTN 785 (920)
Q Consensus 706 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 785 (920)
+.+.... +...++|+.|++++|...... ...++ +|+.|+++++.-.-+.++..+++|+.|+|++|.+.+
T Consensus 194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~~----~~~~~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 194 SYNLLST------LAIPIAVEELDASHNSINVVR----GPVNV-ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CSSCCSE------EECCSSCSEEECCSSCCCEEE----CCCCS-SCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred ccccccc------cCCCCcceEEECCCCeeeecc----ccccc-cccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC
Confidence 8543332 344578999999998765431 11234 899999999843334689999999999999999988
Q ss_pred CcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCC
Q 047503 786 DPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEH 865 (920)
Q Consensus 786 ~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~ 865 (920)
..+..+..+++|+.|+|++|.+. .++.....+++|+.|++++| .+..++...+.+++|+.|++++|+ +..+| +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCT
T ss_pred cChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chh
Confidence 77888999999999999998765 35555677999999999998 466676666789999999999998 55565 788
Q ss_pred CCCCCEEEEecChH
Q 047503 866 LRNLEILKFCGMLT 879 (920)
Q Consensus 866 l~~L~~L~l~~~~~ 879 (920)
+++|++|+++++|-
T Consensus 338 ~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 338 HHTLKNLTLSHNDW 351 (390)
T ss_dssp TCCCSEEECCSSCE
T ss_pred hccCCEEEcCCCCc
Confidence 99999999999873
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3.4e-25 Score=267.42 Aligned_cols=313 Identities=16% Similarity=0.210 Sum_probs=193.6
Q ss_pred CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCC-CCc--CcccccCcc-------cCceeeecCCCccccCc-
Q 047503 550 EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAP-IEF--LPEEVGNLF-------HLHYLSVRNTKVKVLPK- 618 (920)
Q Consensus 550 ~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~--lp~~i~~l~-------~L~~L~L~~~~i~~lp~- 618 (920)
.+++|+.|.+.++... ..++..+.++++|++|+|++|. +.. +|..++++. +|++|+|++|.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4666776666655321 1233556777777777777776 653 666666555 77777777777777777
Q ss_pred -cccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCccc-CccccccccC-chhHHhcc
Q 047503 619 -SIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTD-LQKLYIVQAN-STILKELR 695 (920)
Q Consensus 619 -~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~-L~~L~~~~~~-~~~~~~l~ 695 (920)
.++++++|++|+|++|.++.+| .+..+++|++|++++|.+ ..+|..++.+++ |+.|++..+. ...+..+.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l------~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQI------EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCC------SCCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcc------ccchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 6777777777777777777777 677777777777777522 256666777777 7777777666 22233333
Q ss_pred cCC--CCcEEEEEecCCcc--hhHHHHhc--cCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCcccc
Q 047503 696 KLR--QLRKLGIQLTNDDG--KNLCASIA--DMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIF 768 (920)
Q Consensus 696 ~l~--~L~~L~l~~~~~~~--~~l~~~l~--~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~ 768 (920)
.++ +|+.|+++.+.... ..++..+. .+++|+.|+|++|.... ++......++ +|+.|+|+++ +..+|.++.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~-~L~~L~Ls~N~L~~ip~~~~ 717 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGS-PISTIILSNNLMTSIPENSL 717 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTC-CCSEEECCSCCCSCCCTTSS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCC-CCCEEECCCCcCCccChHHh
Confidence 333 36677766443222 01111111 23467777777776542 2211122344 7777777775 445665443
Q ss_pred C--------CCCcceEEEEeeccCCCcccccC--CCcccceeEEecccCCCeeeEccCCccccceeeecc------CCCC
Q 047503 769 K--------LKNLVRIGLYWSELTNDPMNVLQ--ALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLD------LKGV 832 (920)
Q Consensus 769 ~--------l~~L~~L~L~~~~l~~~~~~~l~--~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l 832 (920)
. +++|+.|+|++|.+. ..+..+. .+|+|+.|+|++|.+.. ++.....+++|+.|+|++ +...
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 3 237777777777776 3444554 77777777777776654 555556677777777765 3333
Q ss_pred ceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 833 TLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 833 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
..+|...+.+++|+.|+|++|.. +.+|..+. ++|+.|+|++||
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 44555566777778888877774 77777655 577778777776
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3.8e-25 Score=262.89 Aligned_cols=297 Identities=18% Similarity=0.170 Sum_probs=186.4
Q ss_pred hhhhhccCCeeeEEEccCCCCCc------------------Cccccc--CcccCceeeecCCCcc-ccCccccCCCCCcE
Q 047503 570 MTKLVAEFKLMKVLDFEDAPIEF------------------LPEEVG--NLFHLHYLSVRNTKVK-VLPKSIGRLLNLQT 628 (920)
Q Consensus 570 ~~~~~~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 628 (920)
++..+.++++|++|+|++|.+.. +|..++ ++.+|++|++++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45567888899999999998887 888888 8999999999988754 78888888999999
Q ss_pred EeecCCc-cc--ccchhhccc------ccCCeEeecccCCCcccccccccC--ccCCcccCccccccccC-c-hhHHhcc
Q 047503 629 LDLKHSL-VT--QLPVEIKNL------KKLRYLLVYHSDNGTHERGVKIQE--GFGSLTDLQKLYIVQAN-S-TILKELR 695 (920)
Q Consensus 629 L~L~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~~~~p~--~i~~l~~L~~L~~~~~~-~-~~~~~l~ 695 (920)
|++++|. ++ .+|..++.+ ++|++|++++|.. ..+|. .++.+++|++|++..+. . ..+ .++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l------~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL------KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC------SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC------CccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 9998887 77 488888776 8888998888632 25777 78888888888888776 2 344 677
Q ss_pred cCCCCcEEEEEecCCcchhHHHHhccCCC-CCEEEEeeCCCCccccc------------------------ccCC-----
Q 047503 696 KLRQLRKLGIQLTNDDGKNLCASIADMEN-LESLTVESTSREETFDI------------------------QSLG----- 745 (920)
Q Consensus 696 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~-L~~L~L~~~~~~~~~~l------------------------~~l~----- 745 (920)
.+++|+.|+++.+... .++..+..+++ |+.|++++|........ ..+.
T Consensus 351 ~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 7777777777643222 34555666777 77777777765421100 0011
Q ss_pred --CCcccccEEEEecc-CCCCCccc-cCCCCcceEEEEeeccCCCcccccCC-------CcccceeEEecccCCCeeeEc
Q 047503 746 --SPPQYLEHLYLVGS-MKNLPDWI-FKLKNLVRIGLYWSELTNDPMNVLQA-------LPNLLELRLRDAYDYEKLHFK 814 (920)
Q Consensus 746 --~~~~~L~~L~L~~~-~~~lp~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~-------lp~L~~L~L~~~~~~~~~~~~ 814 (920)
..+ +|+.|+++++ ...+|..+ ..+++|+.|+|++|.+...+...+.. +++|+.|+|++|.+. .++..
T Consensus 429 ~~~~~-~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCC-CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCC-CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 111 4444444443 23344332 23455555555555554222222211 225566666555444 33333
Q ss_pred cC--CccccceeeeccCCCCceeeEcCCCCccccEEEEe------cCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 815 DG--WFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIG------PCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 815 ~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~------~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.. .+++|+.|++++|. ++.+|...+.+++|+.|+++ +|...+.+|..+..+++|++|++++|.
T Consensus 507 ~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp GSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 33 56666666666653 33355555566666666663 334445566666666677777776665
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-24 Score=255.10 Aligned_cols=306 Identities=17% Similarity=0.173 Sum_probs=247.8
Q ss_pred cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCcc-ccCCCCC
Q 047503 549 TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNL 626 (920)
Q Consensus 549 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L 626 (920)
..+++++.+.+.++.. ..+++.+|..+++|++|+|++|.+..+| ..++.+.+|++|+|++|.+..+|.. ++++++|
T Consensus 48 l~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 3456777777655432 3455677899999999999999999765 5899999999999999999988765 6899999
Q ss_pred cEEeecCCcccccchh-hcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEE
Q 047503 627 QTLDLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGI 705 (920)
Q Consensus 627 ~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l 705 (920)
++|+|++|.++.+|.. +..+++|++|++++|.+ ....|..++.+++|++|++..+..... .++.+++|+.|++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l 199 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANV 199 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----CBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEEC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-----CCCChhhhhcCCcCcEEECcCCCCCCc-Chhhhhhhhhhhc
Confidence 9999999999999987 58999999999999743 223455689999999999998873322 3677889999998
Q ss_pred EecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCC
Q 047503 706 QLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTN 785 (920)
Q Consensus 706 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 785 (920)
+.+.... +...++|+.|++++|....... ..+.+|+.|+|+++.-.-+.++..+++|+.|+|++|.+.+
T Consensus 200 ~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 200 SYNLLST------LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CSSCCSE------EECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred ccCcccc------ccCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC
Confidence 8553332 3456789999999987654321 1223899999999854446789999999999999999988
Q ss_pred CcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCC
Q 047503 786 DPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEH 865 (920)
Q Consensus 786 ~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~ 865 (920)
..+..++.+++|+.|+|++|.+.. ++.....+|+|+.|++++|. +..++...+.+++|+.|+|++|+ +..+| +..
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~ 343 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LST 343 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCT
T ss_pred CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhh
Confidence 888899999999999999987654 56666779999999999975 55677667789999999999998 45555 778
Q ss_pred CCCCCEEEEecCh
Q 047503 866 LRNLEILKFCGML 878 (920)
Q Consensus 866 l~~L~~L~l~~~~ 878 (920)
+++|+.|+++++|
T Consensus 344 ~~~L~~L~l~~N~ 356 (597)
T 3oja_B 344 HHTLKNLTLSHND 356 (597)
T ss_dssp TCCCSEEECCSSC
T ss_pred cCCCCEEEeeCCC
Confidence 8999999999987
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.2e-24 Score=246.97 Aligned_cols=342 Identities=13% Similarity=0.102 Sum_probs=251.9
Q ss_pred cCCCeeEEEEecCcccc---ccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCc
Q 047503 529 CCTKTRRISINQSLNNV---LEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLH 604 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~~---~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~ 604 (920)
.+..+++|.+..+.... .....+++|++|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..++++.+|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 34678999998876522 2355778888887766543 2244456788999999999999998855 78899999999
Q ss_pred eeeecCCCccc-cCcc--ccCCCCCcEEeecCCccccc-chh-hcccccCCeEeecccCCCcccccccccCccCCc--cc
Q 047503 605 YLSVRNTKVKV-LPKS--IGRLLNLQTLDLKHSLVTQL-PVE-IKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSL--TD 677 (920)
Q Consensus 605 ~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l--~~ 677 (920)
+|++++|.+.. +|.. +.++++|++|++++|.++.+ |.. +.++++|++|++++|... ...|..++.+ .+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-----SICEEDLLNFQGKH 181 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-----CCCTTTSGGGTTCE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-----ccChhhhhcccccc
Confidence 99999999874 4444 88899999999999988877 544 889999999999987432 2334445544 56
Q ss_pred CccccccccCchhH----------HhcccCCCCcEEEEEecCCcchhHHHHhcc---CCCCCEEEEeeCCCCccc-c---
Q 047503 678 LQKLYIVQANSTIL----------KELRKLRQLRKLGIQLTNDDGKNLCASIAD---MENLESLTVESTSREETF-D--- 740 (920)
Q Consensus 678 L~~L~~~~~~~~~~----------~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~---~~~L~~L~L~~~~~~~~~-~--- 740 (920)
|+.|++..+..... ..+..+++|+.|+++.+.... ..+..+.. .++|+.|++++|...... .
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeEeeccccccccccchhh
Confidence 77777776652111 123356788888888554433 23333333 378999999877443211 0
Q ss_pred cc-----cCCC-CcccccEEEEeccC--CCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee
Q 047503 741 IQ-----SLGS-PPQYLEHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH 812 (920)
Q Consensus 741 l~-----~l~~-~~~~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~ 812 (920)
+. .+.. ...+|+.|+++++. +..|.++..+++|+.|+|++|.+....+..++++++|+.|+|++|.+.+..+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 00 0111 11389999999873 3467788999999999999999988777889999999999999998865555
Q ss_pred EccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCc-ccCCCCCCCEEEEecCh
Q 047503 813 FKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPA-GIEHLRNLEILKFCGML 878 (920)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 878 (920)
.....+++|++|++++|......+...+.+++|+.|++++|. ++.+|. .+..+++|++|+++++|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 566789999999999986443335567889999999999987 555665 56899999999999865
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.3e-24 Score=244.61 Aligned_cols=291 Identities=19% Similarity=0.169 Sum_probs=171.6
Q ss_pred eeeEEEccCCCCCcC-cccccCcccCceeeecCCCcccc-CccccCCCCCcEEeecCCcccccchh-hcccccCCeEeec
Q 047503 579 LMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVY 655 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 655 (920)
.|++|+|++|.+..+ |..+.++++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 456666666666544 34566666666666666666544 45566666666666666666665543 4566666666666
Q ss_pred ccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeC
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVEST 733 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 733 (920)
+|.. ....|..+..+++|++|++..+. ......+..+++|+.|+++.+.... .....+..+++|+.|++.+|
T Consensus 113 ~n~i-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 113 ENKI-----VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp TSCC-----CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESC
T ss_pred CCcc-----ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCC
Confidence 5421 12233445566666666665554 2223345566666666666332222 12334566677777777776
Q ss_pred CCCcccccccCCCCcccccEEEEecc--CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCee
Q 047503 734 SREETFDIQSLGSPPQYLEHLYLVGS--MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKL 811 (920)
Q Consensus 734 ~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~ 811 (920)
..... ....+...+ +|+.|+++++ ...+|.......+|+.|+|++|.+...+...+..+++|+.|+|++|.+....
T Consensus 187 ~i~~~-~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 187 NINAI-RDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCEE-CTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred cCcEe-ChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence 55432 223344455 7777777764 2345555555557777777777776655556777777777777777655333
Q ss_pred eEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCc-ccCCCCCCCEEEEecCh
Q 047503 812 HFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPA-GIEHLRNLEILKFCGML 878 (920)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 878 (920)
+.....+++|+.|++.++......+..+..+++|+.|+|++|. ++.+|. .+..+++|++|+++++|
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 3334566777777777764333334445667777777777775 444543 45677777777777654
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=254.87 Aligned_cols=344 Identities=17% Similarity=0.139 Sum_probs=204.2
Q ss_pred CCCeeEEEEecCcccc---ccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCce
Q 047503 530 CTKTRRISINQSLNNV---LEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHY 605 (920)
Q Consensus 530 ~~~~r~lsl~~~~~~~---~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~ 605 (920)
+..+++|.+..+.... .....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+| ..++++.+|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 4567777777665421 1344566677776655432 2233455677777777777777776554 56777777777
Q ss_pred eeecCCCccccCc-cccCCCCCcEEeecCCcccc--cchhhcccccCCeEeecccCCCcccc------------------
Q 047503 606 LSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQ--LPVEIKNLKKLRYLLVYHSDNGTHER------------------ 664 (920)
Q Consensus 606 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~------------------ 664 (920)
|++++|.+..+|. .++++++|++|++++|.++. +|..+.++++|++|++++|.......
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 7777777776665 46777777777777776664 56677777777777777654311000
Q ss_pred ----c---------------------------------------------------------------------------
Q 047503 665 ----G--------------------------------------------------------------------------- 665 (920)
Q Consensus 665 ----~--------------------------------------------------------------------------- 665 (920)
.
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 0
Q ss_pred -------ccccCccCCcccCccccccccC-chhHHhcc--------------------cCCCCcEEEEEe----------
Q 047503 666 -------VKIQEGFGSLTDLQKLYIVQAN-STILKELR--------------------KLRQLRKLGIQL---------- 707 (920)
Q Consensus 666 -------~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~--------------------~l~~L~~L~l~~---------- 707 (920)
...|..++.+++|++|++..+. ...+..+. .+++|+.|.+..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence 0011122233344444433332 11111111 122222222221
Q ss_pred ------------cCCcch-hHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCC-C-ccccCCC
Q 047503 708 ------------TNDDGK-NLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNL-P-DWIFKLK 771 (920)
Q Consensus 708 ------------~~~~~~-~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~l-p-~~~~~l~ 771 (920)
+..... ..+..+..+++|+.|++++|...... ..+..++ +|++|+++++ .... | ..+..++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE--EEEETCT-TCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc--ccccccC-CCCEEEccCCccccccchhhhhcCC
Confidence 100000 00122333444444444444322211 1133444 7777777765 2222 2 3567788
Q ss_pred CcceEEEEeeccCCCcccccCCCcccceeEEecccCC-CeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEE
Q 047503 772 NLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY-EKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKI 850 (920)
Q Consensus 772 ~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 850 (920)
+|+.|+|++|.+....+..+.++++|+.|+|++|.+. ..++.....+++|+.|++++|......+...+.+++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 8888888888887777778888999999999888765 356666678899999999988644433556778999999999
Q ss_pred ecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 851 GPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 851 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
++|......|..+..+++|++|+++++|
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9997444444568899999999999865
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.6e-24 Score=246.86 Aligned_cols=333 Identities=16% Similarity=0.156 Sum_probs=185.8
Q ss_pred CCCeeEEEEecCccc-c--ccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCcee
Q 047503 530 CTKTRRISINQSLNN-V--LEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYL 606 (920)
Q Consensus 530 ~~~~r~lsl~~~~~~-~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 606 (920)
+.++++|.+..+... . .....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|.. .+.+|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 357888888877652 2 1345677777777766543 234456677888888888888888877766 78888888
Q ss_pred eecCCCccc--cCccccCCCCCcEEeecCCcccccchhhcccccC--CeEeecccCCCcccccccccC------------
Q 047503 607 SVRNTKVKV--LPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKL--RYLLVYHSDNGTHERGVKIQE------------ 670 (920)
Q Consensus 607 ~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~~~~~~~~~~p~------------ 670 (920)
++++|.+.. +|..++++++|++|++++|.++. ..+..+++| ++|++++|.... ....|.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~---~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG---EKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT---SSCCTTTTTTCCEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc---cccccccccccccceEEE
Confidence 888888775 56778888888888888887765 346667777 888887764400 011111
Q ss_pred --------------ccCCcccCccccccccC--------chhHHhcccCC---------------------------CCc
Q 047503 671 --------------GFGSLTDLQKLYIVQAN--------STILKELRKLR---------------------------QLR 701 (920)
Q Consensus 671 --------------~i~~l~~L~~L~~~~~~--------~~~~~~l~~l~---------------------------~L~ 701 (920)
.+..+++|+.|++..+. ...+..++.++ +|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 22345566666655542 01111222222 344
Q ss_pred EEEEEecCCcchhHHHHh-----ccCC--------------------------CCCEEEEeeCCCCcccccccCCCCccc
Q 047503 702 KLGIQLTNDDGKNLCASI-----ADME--------------------------NLESLTVESTSREETFDIQSLGSPPQY 750 (920)
Q Consensus 702 ~L~l~~~~~~~~~l~~~l-----~~~~--------------------------~L~~L~L~~~~~~~~~~l~~l~~~~~~ 750 (920)
.|+++.+...+ .++..+ ..++ +|+.|++++|..... .....++ +
T Consensus 251 ~L~l~~n~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~l~-~ 325 (520)
T 2z7x_B 251 YFSISNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM---LCPSKIS-P 325 (520)
T ss_dssp EEEEEEEEEES-CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC---CCCSSCC-C
T ss_pred EEEeecccccC-ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc---cchhhCC-c
Confidence 44444211110 011111 1222 233333333322111 0002223 5
Q ss_pred ccEEEEeccC--CCCCccccCCCCcceEEEEeeccCC--CcccccCCCcccceeEEecccCCCeeeEc-cC---------
Q 047503 751 LEHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTN--DPMNVLQALPNLLELRLRDAYDYEKLHFK-DG--------- 816 (920)
Q Consensus 751 L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~l~~lp~L~~L~L~~~~~~~~~~~~-~~--------- 816 (920)
|++|+++++. +.+|.++..+++|+.|+|++|.+.+ ..+..++.+++|+.|+|++|.+...++.. ..
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 5555555541 1234444555555555555554443 12233444455555555444333211110 11
Q ss_pred ------------Cc-cccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcc-cCCCCCCCEEEEecCh
Q 047503 817 ------------WF-PRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAG-IEHLRNLEILKFCGML 878 (920)
Q Consensus 817 ------------~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 878 (920)
.+ ++|+.|++++| .++.++.....+++|+.|++++|. ++.+|.. +..+++|++|+++++|
T Consensus 406 Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 406 MSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 12 57777777776 345666656688999999999886 5678876 8889999999999866
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.6e-24 Score=261.66 Aligned_cols=318 Identities=16% Similarity=0.166 Sum_probs=250.9
Q ss_pred ccCCCCceEEEeeccCCCCcc----------------hhhhhhc--cCCeeeEEEccCCCCC-cCcccccCcccCceeee
Q 047503 548 WTEDSKIRSVFFLNVDKLPGS----------------FMTKLVA--EFKLMKVLDFEDAPIE-FLPEEVGNLFHLHYLSV 608 (920)
Q Consensus 548 ~~~~~~lrsL~~~~~~~~~~~----------------~~~~~~~--~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~L 608 (920)
...+++|+.|.+.++.. ... .++..+. ++++|++|+|++|.+. .+|..++++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcC-CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 45678888888877653 220 1344444 9999999999999865 88999999999999999
Q ss_pred cCCC-ccc--cCccccCCC-------CCcEEeecCCcccccch--hhcccccCCeEeecccCCCcccccccccCccCCcc
Q 047503 609 RNTK-VKV--LPKSIGRLL-------NLQTLDLKHSLVTQLPV--EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLT 676 (920)
Q Consensus 609 ~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~ 676 (920)
++|. +.. +|..++++. +|++|+|++|.++.+|. .+.++++|++|++++|.+ ..+| .++.++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l------~~lp-~~~~L~ 595 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV------RHLE-AFGTNV 595 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC------CBCC-CCCTTS
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc------ccch-hhcCCC
Confidence 9997 874 888777665 99999999999999998 899999999999999732 2677 889999
Q ss_pred cCccccccccC-chhHHhcccCCC-CcEEEEEecCCcchhHHHHhccCC--CCCEEEEeeCCCCcccc-c-ccCC--CCc
Q 047503 677 DLQKLYIVQAN-STILKELRKLRQ-LRKLGIQLTNDDGKNLCASIADME--NLESLTVESTSREETFD-I-QSLG--SPP 748 (920)
Q Consensus 677 ~L~~L~~~~~~-~~~~~~l~~l~~-L~~L~l~~~~~~~~~l~~~l~~~~--~L~~L~L~~~~~~~~~~-l-~~l~--~~~ 748 (920)
+|+.|++..+. ...+..+..+++ |+.|+++.+... .++..+..++ +|+.|++++|...+.++ + ..+. ..+
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999887 445567888998 999999955443 3454555544 49999999998765431 1 1111 233
Q ss_pred ccccEEEEecc-CCCCCcccc-CCCCcceEEEEeeccCCCcccccC-------CCcccceeEEecccCCCeeeEccC--C
Q 047503 749 QYLEHLYLVGS-MKNLPDWIF-KLKNLVRIGLYWSELTNDPMNVLQ-------ALPNLLELRLRDAYDYEKLHFKDG--W 817 (920)
Q Consensus 749 ~~L~~L~L~~~-~~~lp~~~~-~l~~L~~L~L~~~~l~~~~~~~l~-------~lp~L~~L~L~~~~~~~~~~~~~~--~ 817 (920)
+|+.|+|+++ ...+|.++. .+++|+.|+|++|.+...+...+. ++++|+.|+|++|.+. .++.... .
T Consensus 674 -~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 -NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp -CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred -CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 8999999987 567887765 789999999999998744333332 3459999999999776 5565554 7
Q ss_pred ccccceeeeccCCCCceeeEcCCCCccccEEEEec------CCCCCccCcccCCCCCCCEEEEecCh
Q 047503 818 FPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGP------CPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 818 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+++|+.|+|++|. +..++...+.+++|+.|+|++ |...+.+|..+.++++|++|+|++|.
T Consensus 752 l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 752 LPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 9999999999975 455777788999999999987 55567889999999999999999997
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.6e-23 Score=240.16 Aligned_cols=318 Identities=17% Similarity=0.200 Sum_probs=191.6
Q ss_pred CCeeEEEEecCcc-ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeec
Q 047503 531 TKTRRISINQSLN-NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVR 609 (920)
Q Consensus 531 ~~~r~lsl~~~~~-~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 609 (920)
..++.+.+.++.. .+.....+++|++|.+.++... ..+. +.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~---~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccC---Cchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 3566666665543 2333445666666666554321 1122 5667777777777777666655 6677777777777
Q ss_pred CCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeec---------------------ccCCCcccccccc
Q 047503 610 NTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVY---------------------HSDNGTHERGVKI 668 (920)
Q Consensus 610 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~---------------------~~~~~~~~~~~~~ 668 (920)
+|.+..+|. +.++++|++|++++|.+..+|. +..+++|++|+++ +|... .+
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~------~~ 192 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS------DI 192 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC------CC
T ss_pred CCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC------CC
Confidence 777666654 6667777777777766666553 5555555555554 33111 11
Q ss_pred cCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCc
Q 047503 669 QEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPP 748 (920)
Q Consensus 669 p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 748 (920)
..+..+++|++|++..+.......++.+++|+.|+++.+.... + ..+..+++|+.|++++|......+ +..++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~ 265 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNLAP---LSGLT 265 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred -hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCccccchh---hhcCC
Confidence 1234445555555544442222224455555555555322221 1 234556666666666665543322 44445
Q ss_pred ccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeec
Q 047503 749 QYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLL 827 (920)
Q Consensus 749 ~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 827 (920)
+|+.|+++++ ...+|. +..+++|+.|+|++|.+.+.. .++.+++|+.|+|++|.+.+..+ ...+++|+.|++.
T Consensus 266 -~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 -KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp -TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred -CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 7777777776 344444 667788888888888776533 36778888888888776655433 4568888888888
Q ss_pred cCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 828 DLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 828 ~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+|. +..++ ....+++|+.|++++|+.....| +..+++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 874 44443 45678899999999887544444 7888999999998875
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4.3e-24 Score=254.02 Aligned_cols=292 Identities=15% Similarity=0.120 Sum_probs=222.5
Q ss_pred eeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccCccccCCCCCcEEeecCCccccc-chhhcccccCCeEeecc
Q 047503 579 LMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQL-PVEIKNLKKLRYLLVYH 656 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 656 (920)
.|+.|++++|.+..++. .++.+++|++|++++|.+..+|..+.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 67788888888776654 47888899999999988888988888899999999998888876 45788889999999988
Q ss_pred cCCCcccccccccCc-cCCcccCccccccccCch--h--HHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEe
Q 047503 657 SDNGTHERGVKIQEG-FGSLTDLQKLYIVQANST--I--LKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVE 731 (920)
Q Consensus 657 ~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~ 731 (920)
|.. ...+|.. ++.+++|++|++..+... . ...+..+++|+.|+++.+.... ..+..+..+++|+.|+++
T Consensus 335 n~~-----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 335 NTK-----RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLA 408 (606)
T ss_dssp CSS-----CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECT
T ss_pred CCc-----ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECC
Confidence 632 2244443 788899999998887722 1 4567888899999888443322 234457778899999998
Q ss_pred eCCCCcccccccCCCCcccccEEEEeccC--CCCCccccCCCCcceEEEEeeccCCC---cccccCCCcccceeEEeccc
Q 047503 732 STSREETFDIQSLGSPPQYLEHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTND---PMNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 732 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~---~~~~l~~lp~L~~L~L~~~~ 806 (920)
+|......+...+..++ +|+.|+++++. ...|.++..+++|+.|+|++|.+.+. ....++.+++|+.|+|++|.
T Consensus 409 ~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCEECCTTCCTTTTCT-TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCcCCCcccchhhhCcc-cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 88665433323355566 89999998873 34577788899999999999988663 22457889999999999887
Q ss_pred CCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 807 DYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 807 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+....+...+.+++|+.|++++|......+.....+++| .|++++|......|..+..+++|+.|+++++|
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 776555556788999999999886555555567788889 99999998665556678889999999999976
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.5e-23 Score=246.57 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=78.7
Q ss_pred cccEEEEeccC--CCCCccccCCCCcceEEEEeeccCCCc--ccccCCCcccceeEEecccCCCeeeE------------
Q 047503 750 YLEHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTNDP--MNVLQALPNLLELRLRDAYDYEKLHF------------ 813 (920)
Q Consensus 750 ~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~--~~~l~~lp~L~~L~L~~~~~~~~~~~------------ 813 (920)
+|++|+++++. +..|.++..+++|+.|+|++|.+.... +..++++++|+.|+|++|.+...++.
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 55555555541 224555555555555555555554421 23345555555555555443321111
Q ss_pred ----------ccCCc-cccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcc-cCCCCCCCEEEEecCh
Q 047503 814 ----------KDGWF-PRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAG-IEHLRNLEILKFCGML 878 (920)
Q Consensus 814 ----------~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 878 (920)
....+ ++|+.|++++| .++.++.....+++|+.|++++|. ++.+|.. +..+++|+.|+++++|
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 01123 57888888876 466677666788999999999887 5678877 8889999999999866
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=8.1e-23 Score=234.23 Aligned_cols=300 Identities=19% Similarity=0.205 Sum_probs=200.3
Q ss_pred cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcE
Q 047503 549 TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQT 628 (920)
Q Consensus 549 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 628 (920)
..++++++|.+.++.... ++. +..+++|++|++++|.+..+|. ++++.+|++|++++|.+..+|. +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~---l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS---IDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC---CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc---Ccc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 346788888887664322 233 6789999999999999998887 9999999999999999999887 999999999
Q ss_pred EeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccc---------------------cccC
Q 047503 629 LDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYI---------------------VQAN 687 (920)
Q Consensus 629 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~---------------------~~~~ 687 (920)
|++++|.++.+|. +.++++|++|++++|.... ++ .++.+++|+.|++ ..+.
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD------IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC------CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCC------Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 9999999999986 9999999999999974322 22 2445555555544 4433
Q ss_pred chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCcc
Q 047503 688 STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDW 766 (920)
Q Consensus 688 ~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~ 766 (920)
...+..+..+++|+.|+++.+..... . .+..+++|+.|++++|..... ..+..++ +|+.|+++++ ...++.
T Consensus 189 l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~---~~l~~l~-~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 189 VSDISVLAKLTNLESLIATNNQISDI--T-PLGILTNLDELSLNGNQLKDI---GTLASLT-NLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCCC---GGGGGCT-TCSEEECCSSCCCCCGG-
T ss_pred CCCChhhccCCCCCEEEecCCccccc--c-cccccCCCCEEECCCCCcccc---hhhhcCC-CCCEEECCCCccccchh-
Confidence 22223344444444444442221110 0 133445555555555543321 2333344 6666666665 233332
Q ss_pred ccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCcccc
Q 047503 767 IFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLR 846 (920)
Q Consensus 767 ~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 846 (920)
+..+++|+.|+|++|.+..... +..+++|+.|+|++|.+....+ ...+++|+.|++.+|.. ..++. .+.+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC-SCCGG-GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC-CCchh-hccCccCC
Confidence 5666777777777776654332 6677777777777766544322 45678888888887743 33322 45788888
Q ss_pred EEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 847 ELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 847 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.|++++|+ +..+ ..+..+++|++|++++|+
T Consensus 335 ~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 335 RLFFYNNK-VSDV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSC-CCCC-GGGTTCTTCCEEECCSSC
T ss_pred EeECCCCc-cCCc-hhhccCCCCCEEeCCCCc
Confidence 88888886 5555 367888999999999875
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.1e-23 Score=246.56 Aligned_cols=339 Identities=15% Similarity=0.083 Sum_probs=194.4
Q ss_pred cCCCeeEEEEecCccccc---cccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCc
Q 047503 529 CCTKTRRISINQSLNNVL---EWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLH 604 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~---~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~ 604 (920)
.+..+++|.+..+..... ....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+ |..++++.+|+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 455788888887765222 345677777777765533 234456678888888888888888744 66788888888
Q ss_pred eeeecCCCcccc-CccccCCCCCcEEeecCCcccccc-hhhcccccCCeEeecccCCCcccccccccCccCCcccCc--c
Q 047503 605 YLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSLVTQLP-VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQ--K 680 (920)
Q Consensus 605 ~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~--~ 680 (920)
+|++++|.+..+ |..++++++|++|++++|.+..++ ..+..+++|++|++++|.. ....|..++.+++|+ +
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI-----HYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC-----CEECHHHHHTTTTCCSEE
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc-----cccChhhhhhhcccceeE
Confidence 888888888876 566788888888888888887652 2344588888888888632 222344566777777 5
Q ss_pred ccccccC-chhHHhcccCCCCcEEEEE----------------------------------------------------e
Q 047503 681 LYIVQAN-STILKELRKLRQLRKLGIQ----------------------------------------------------L 707 (920)
Q Consensus 681 L~~~~~~-~~~~~~l~~l~~L~~L~l~----------------------------------------------------~ 707 (920)
|++..+. ...........+|+.|++. .
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 6666554 1111111111223333222 1
Q ss_pred cCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCC-CccccCCCCcceEEEEeeccCC
Q 047503 708 TNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNL-PDWIFKLKNLVRIGLYWSELTN 785 (920)
Q Consensus 708 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~l-p~~~~~l~~L~~L~L~~~~l~~ 785 (920)
+.... ..+..+..+++|+.|++++|..... + ..+...+ +|++|+++++ ...+ |..+..+++|+.|+|++|.+..
T Consensus 264 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~l-p-~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 264 HYFFN-ISSNTFHCFSGLQELDLTATHLSEL-P-SGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CCCSS-CCTTTTTTCTTCSEEECTTSCCSCC-C-SSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred CccCc-cCHHHhccccCCCEEeccCCccCCC-C-hhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 10000 0111244455555555555544321 1 2233334 5566665554 2222 3445555666666666655443
Q ss_pred C-cccccCCCcccceeEEecccCCCee--eEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCc-
Q 047503 786 D-PMNVLQALPNLLELRLRDAYDYEKL--HFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPA- 861 (920)
Q Consensus 786 ~-~~~~l~~lp~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~- 861 (920)
. +...++.+++|+.|++++|.+.... +.....+++|++|++.++......+...+.+++|+.|++++|......|.
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 2 2223556666666666655544332 22344566667777666543322333445667777777777664433333
Q ss_pred ccCCCCCCCEEEEecCh
Q 047503 862 GIEHLRNLEILKFCGML 878 (920)
Q Consensus 862 ~l~~l~~L~~L~l~~~~ 878 (920)
.+..+++|++|++++|.
T Consensus 420 ~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTCTTCCEEECTTCC
T ss_pred hhhCcccCCEEECCCCc
Confidence 36677777777777764
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=7.7e-23 Score=225.11 Aligned_cols=301 Identities=15% Similarity=0.140 Sum_probs=238.5
Q ss_pred CCCeeEEEEecCcc-ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeee
Q 047503 530 CTKTRRISINQSLN-NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSV 608 (920)
Q Consensus 530 ~~~~r~lsl~~~~~-~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 608 (920)
..+++++.+.++.. .+.....++++++|.+.++.... .+. +..+++|++|++++|.+..+| .++.+++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~---~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD---ISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCcccc---chh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 46788999987765 44446678899999887764322 222 789999999999999999876 5899999999999
Q ss_pred cCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCc
Q 047503 609 RNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANS 688 (920)
Q Consensus 609 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 688 (920)
++|.+..+|. +..+++|++|++++|.....+..+..+++|++|++++|... .++. ++.+++|++|++..+..
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~------~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK------DVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC------CCGG-GGGCTTCSEEECTTSCC
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC------Cchh-hccCCCCCEEEccCCcc
Confidence 9999999887 88999999999999954444445999999999999997432 2332 78899999999998884
Q ss_pred hhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccC-CCCCccc
Q 047503 689 TILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSM-KNLPDWI 767 (920)
Q Consensus 689 ~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~ 767 (920)
.....+..+++|+.|+++.+..... . .+..+++|+.|++++|...... .+..++ +|++|+++++. ..+ ..+
T Consensus 190 ~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~n~l~~~~---~~~~l~-~L~~L~l~~n~l~~~-~~~ 261 (347)
T 4fmz_A 190 EDISPLASLTSLHYFTAYVNQITDI--T-PVANMTRLNSLKIGNNKITDLS---PLANLS-QLTWLEIGTNQISDI-NAV 261 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCCCG---GGTTCT-TCCEEECCSSCCCCC-GGG
T ss_pred cccccccCCCccceeecccCCCCCC--c-hhhcCCcCCEEEccCCccCCCc---chhcCC-CCCEEECCCCccCCC-hhH
Confidence 4445588999999999985433321 1 1778899999999999776532 255666 99999999973 444 468
Q ss_pred cCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccE
Q 047503 768 FKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRE 847 (920)
Q Consensus 768 ~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 847 (920)
..+++|+.|+|++|.+... +.+..+++|+.|+|++|.+....+.....+++|++|++.+|. +..++. ...+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccce
Confidence 8899999999999988764 568899999999999998776555555679999999999986 444433 678999999
Q ss_pred EEEecCCC
Q 047503 848 LKIGPCPL 855 (920)
Q Consensus 848 L~l~~c~~ 855 (920)
|++++|+.
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 99999973
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.2e-22 Score=241.53 Aligned_cols=316 Identities=18% Similarity=0.160 Sum_probs=199.5
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCCcccc-CccccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~ 628 (920)
.+.+++|.+.++.. ....+..|.++++|++|++++|.+..+ |..++++.+|++|++++|.+..+ |..++++++|++
T Consensus 31 ~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 47888888776543 234455789999999999999999966 56799999999999999999987 788999999999
Q ss_pred EeecCCcccccc-hhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC--chhHH---hcccC-----
Q 047503 629 LDLKHSLVTQLP-VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILK---ELRKL----- 697 (920)
Q Consensus 629 L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~---~l~~l----- 697 (920)
|++++|.+..+| ..++++++|++|++++|... ...+|..++++++|++|++..+. ...+. .+.++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIH----SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC----CCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCccc----ceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 999999999887 57999999999999997432 22578889999999999998876 11111 12212
Q ss_pred -------------------CCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCccc-------------------
Q 047503 698 -------------------RQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETF------------------- 739 (920)
Q Consensus 698 -------------------~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~------------------- 739 (920)
.+|+.|+++.+.......+..+..+++|+.+.+..+......
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 245566666443333455566666666666555432111000
Q ss_pred ------------ccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEeccc
Q 047503 740 ------------DIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 740 ------------~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 806 (920)
....+...+ +|+.|.++++ ...+| ++..+++|+.|++++|.+. ..+ .+ .+++|+.|++++|.
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGT-TCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCS
T ss_pred heeccccccccccccccccCC-CCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCc
Confidence 001122233 6666666665 34455 5666666666666666652 222 33 56666666665553
Q ss_pred CCCee------------------------eEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccC-c
Q 047503 807 DYEKL------------------------HFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIP-A 861 (920)
Q Consensus 807 ~~~~~------------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~ 861 (920)
....+ +.....+++|++|++.+|. +..++.....+++|+.|++++|......| .
T Consensus 340 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp SCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred CccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChh
Confidence 22222 1112234445555554432 33333344455666666666655333333 3
Q ss_pred ccCCCCCCCEEEEecCh
Q 047503 862 GIEHLRNLEILKFCGML 878 (920)
Q Consensus 862 ~l~~l~~L~~L~l~~~~ 878 (920)
.+..+++|++|++++|.
T Consensus 419 ~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTN 435 (606)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred hhhccccCCEEECcCCC
Confidence 55666666666666654
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=8.9e-23 Score=234.98 Aligned_cols=294 Identities=19% Similarity=0.192 Sum_probs=232.5
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCcc-ccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 628 (920)
.+.++.|.+.++.. ....+..|.++++|++|+|++|.+..+ |..++++.+|++|+|++|.+..+|.. +.++++|++
T Consensus 31 ~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 35677776655433 233456788999999999999999865 78899999999999999999999875 689999999
Q ss_pred EeecCCccccc-chhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEE
Q 047503 629 LDLKHSLVTQL-PVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGI 705 (920)
Q Consensus 629 L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l 705 (920)
|+|++|.+..+ |..+..+++|++|++++|.. ....+..++.+++|++|++..+. ......+..+++|+.|++
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDL-----VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTC-----CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCcc-----ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999998866 55789999999999998732 22345578899999999999887 333456889999999999
Q ss_pred EecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCC-ccccCCCCcceEEEEeecc
Q 047503 706 QLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLP-DWIFKLKNLVRIGLYWSEL 783 (920)
Q Consensus 706 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp-~~~~~l~~L~~L~L~~~~l 783 (920)
+.+.... .....+..+++|+.|++++|...+.++. ...... +|++|+|+++ ...+| ..+..+++|+.|+|++|.+
T Consensus 184 ~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 184 RHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp ESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcCcE-eChhhcccCcccceeeCCCCccccccCc-ccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 9543332 1233577889999999999876655432 222334 8999999987 56677 4578899999999999998
Q ss_pred CCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeE-cCCCCccccEEEEecCCC
Q 047503 784 TNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMI-DKGAMPCLRELKIGPCPL 855 (920)
Q Consensus 784 ~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~ 855 (920)
.......+..+++|+.|+|++|.+....+.....+++|+.|+++++. ++.++. .+..+++|+.|++++|+.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCc
Confidence 87777788999999999999998776555566788999999999974 555543 356789999999999884
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.8e-23 Score=242.77 Aligned_cols=338 Identities=17% Similarity=0.187 Sum_probs=204.5
Q ss_pred CCCeeEEEEecCccc-c--ccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCccc-ccCcccCce
Q 047503 530 CTKTRRISINQSLNN-V--LEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEE-VGNLFHLHY 605 (920)
Q Consensus 530 ~~~~r~lsl~~~~~~-~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~ 605 (920)
+..+++|.+..+... . .....+++|++|.+.++.. ....+..|.++++|++|++++|.+..+|.. ++++.+|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 457899999887652 2 2356778888887776543 234456788999999999999999877654 899999999
Q ss_pred eeecCCCccc--cCccccCCCCCcEEeecCCc-ccccc-hhhcccccCCeEeecccCCCcccccccccCccCCcccCccc
Q 047503 606 LSVRNTKVKV--LPKSIGRLLNLQTLDLKHSL-VTQLP-VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKL 681 (920)
Q Consensus 606 L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L 681 (920)
|++++|.+.. .|..++++++|++|++++|. +..+| ..+..+++|++|++++|.. ....|..++.+++|++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-----RNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-----CEECTTTTTTCSEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-----cccChhhhhccccCceE
Confidence 9999999884 46788999999999999986 77776 4688999999999998743 22345556665555555
Q ss_pred cccccCch-hHHh-cccCCCCcEEEEEecCCcc-----------------------------------------------
Q 047503 682 YIVQANST-ILKE-LRKLRQLRKLGIQLTNDDG----------------------------------------------- 712 (920)
Q Consensus 682 ~~~~~~~~-~~~~-l~~l~~L~~L~l~~~~~~~----------------------------------------------- 712 (920)
++..+... .+.. +..+++|+.|+++.+....
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 55443311 1111 1223333333333110000
Q ss_pred -----------------------------------------------------------------hhHHHHh-ccCCCCC
Q 047503 713 -----------------------------------------------------------------KNLCASI-ADMENLE 726 (920)
Q Consensus 713 -----------------------------------------------------------------~~l~~~l-~~~~~L~ 726 (920)
..++..+ ..+++|+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc
Confidence 0011111 2345555
Q ss_pred EEEEeeCCCCcccc--cccCCCCcccccEEEEecc-CCCCC---ccccCCCCcceEEEEeeccCCCcccccCCCccccee
Q 047503 727 SLTVESTSREETFD--IQSLGSPPQYLEHLYLVGS-MKNLP---DWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLEL 800 (920)
Q Consensus 727 ~L~L~~~~~~~~~~--l~~l~~~~~~L~~L~L~~~-~~~lp---~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L 800 (920)
.|++++|...+..+ ...+...+ +|+.|+++++ ...+| ..+..+++|+.|+|++|.+. ..+..++.+++|+.|
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred EEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 55555554433211 11123333 5555555554 22222 23455566666666666554 233344555555555
Q ss_pred EEecccCCCe----------ee-------EccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCccc
Q 047503 801 RLRDAYDYEK----------LH-------FKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGI 863 (920)
Q Consensus 801 ~L~~~~~~~~----------~~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l 863 (920)
+|++|.+..- +. .....+++|++|++++| .++.++. .+.+++|+.|++++|......|..+
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 5555433210 00 00135677777777776 3455554 3567888888888887444444568
Q ss_pred CCCCCCCEEEEecCh
Q 047503 864 EHLRNLEILKFCGML 878 (920)
Q Consensus 864 ~~l~~L~~L~l~~~~ 878 (920)
..+++|+.|+++++|
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 494 DRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGCTTCCEEECCSSC
T ss_pred hcCcccCEEEecCCC
Confidence 889999999998876
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=2e-22 Score=228.91 Aligned_cols=294 Identities=19% Similarity=0.183 Sum_probs=216.7
Q ss_pred CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEE
Q 047503 550 EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTL 629 (920)
Q Consensus 550 ~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 629 (920)
.++++++|.+.++... ..+ .+..+++|++|++++|.+..+| ++.+.+|++|++++|.+..+| ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~---~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT---DMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCC---CCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcc---cCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 4556666666554321 122 3678889999999999988876 888899999999999888886 7889999999
Q ss_pred eecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEec
Q 047503 630 DLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLT 708 (920)
Q Consensus 630 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 708 (920)
++++|.++.+| +..+++|++|++++|.+. .+ .++.+++|++|++..+. .... .+..+++|+.|+++.+
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~------~l--~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLT------EI--DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCS------CC--CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSS
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccc------ee--ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCC
Confidence 99999888876 788899999999887432 22 26788889999888875 2222 5778888999988855
Q ss_pred CCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCc
Q 047503 709 NDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDP 787 (920)
Q Consensus 709 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~ 787 (920)
.... ++ +..+++|+.|++++|..... .+..++ +|+.|+++++ ...+| +..+++|+.|+|++|.+.+.+
T Consensus 181 ~l~~--l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~-~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 181 KITE--LD--VSQNKLLNRLNCDTNNITKL----DLNQNI-QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCCC--CC--CTTCTTCCEEECCSSCCSCC----CCTTCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ccce--ec--cccCCCCCEEECcCCcCCee----ccccCC-CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 4433 22 67788999999998876543 255566 8999999887 45677 778899999999999888765
Q ss_pred ccccCCCc-------ccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeE--------cCCCCccccEEEEec
Q 047503 788 MNVLQALP-------NLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMI--------DKGAMPCLRELKIGP 852 (920)
Q Consensus 788 ~~~l~~lp-------~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~~~~L~~L~l~~ 852 (920)
+..+.++. +|+.|++++|.....++ .+.+++|+.|++++|..++.++. ....+++|+.|++++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 44433333 44555666665555555 36789999999999887777654 234568888888888
Q ss_pred CCCCCccCcccCCCCCCCEEEEecCh
Q 047503 853 CPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 853 c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
|. ++.++ +..+++|+.|+++++.
T Consensus 328 N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 328 TE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred Cc-ccccc--cccCCcCcEEECCCCC
Confidence 77 55564 8889999999998765
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1e-22 Score=221.31 Aligned_cols=233 Identities=24% Similarity=0.313 Sum_probs=194.5
Q ss_pred cCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeec
Q 047503 576 EFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 655 (920)
....+++|+|++|.+..+|..++++.+|++|+|++|.+..+|..++++++|++|+|++|.++.+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCC
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSR 735 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 735 (920)
+|+ ....+|..++.. . +...+..+++|+.|++++|..
T Consensus 159 ~n~-----~~~~~p~~~~~~----------------------------~----------~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 159 ACP-----ELTELPEPLAST----------------------------D----------ASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EET-----TCCCCCSCSEEE----------------------------C-----------CCCEEESTTCCEEEEEEECC
T ss_pred CCC-----CccccChhHhhc----------------------------c----------chhhhccCCCCCEEECcCCCc
Confidence 873 223444433210 0 001134456666666666532
Q ss_pred CcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEcc
Q 047503 736 EETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKD 815 (920)
Q Consensus 736 ~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~ 815 (920)
..+|.++..+++|+.|+|++|.+.. .++.++.+++|+.|+|++|.....++...
T Consensus 196 -------------------------~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 196 -------------------------RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp -------------------------CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred -------------------------CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 2456678888999999999998875 44568899999999999988887777777
Q ss_pred CCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecC
Q 047503 816 GWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGM 877 (920)
Q Consensus 816 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 877 (920)
+.+++|++|++.+|...+.++...+.+++|+.|+|++|+.++.+|..+.++++|+.+++...
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88999999999999888888888889999999999999999999999999999999988753
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.5e-23 Score=231.66 Aligned_cols=280 Identities=16% Similarity=0.191 Sum_probs=232.8
Q ss_pred cCCeeeEEEccCCCCCcCccc-ccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccch-hhcccccCCeE
Q 047503 576 EFKLMKVLDFEDAPIEFLPEE-VGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYL 652 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L 652 (920)
.+++|++|+++++.+..+|.. +..+++|++|++++|.+..+|. .+.++++|++|++++|.++.+|. .+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 568999999999999988865 6889999999999999998875 78999999999999999998865 58999999999
Q ss_pred eecccCCCcccccccccCc-cCCcccCccccccccC--chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEE
Q 047503 653 LVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLT 729 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~ 729 (920)
++++|. ...+|.. ++.+++|++|++..+. ...+..+..+++|+.|+++.+..... .+..+++|+.|+
T Consensus 123 ~L~~n~------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~ 192 (390)
T 3o6n_A 123 VLERND------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHAN 192 (390)
T ss_dssp ECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEE
T ss_pred ECCCCc------cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceee
Confidence 999973 3356665 5899999999999887 33344588999999999985544332 356789999999
Q ss_pred EeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCC
Q 047503 730 VESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY 808 (920)
Q Consensus 730 L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 808 (920)
+++|.... +..++ +|++|+++++ ...+|.. .+++|+.|+|++|.+.+. +.++.+++|+.|+|++|.+.
T Consensus 193 l~~n~l~~------~~~~~-~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLST------LAIPI-AVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCSE------EECCS-SCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cccccccc------cCCCC-cceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 99886543 23344 8999999987 3444432 358999999999998764 67899999999999999887
Q ss_pred CeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 809 EKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 809 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
...+.....+++|+.|++.++ .++.++...+.+|+|+.|++++|. +..+|..+..+++|++|++++|+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 666666778999999999997 567787777889999999999996 67889889999999999999987
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=246.91 Aligned_cols=336 Identities=16% Similarity=0.160 Sum_probs=215.4
Q ss_pred cCCCeeEEEEecCccc---cccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCc
Q 047503 529 CCTKTRRISINQSLNN---VLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLH 604 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~---~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~ 604 (920)
.+.++++|.+..+... ......+++|+.|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..++++.+|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 4678999999988662 22356778888888876633 2344467789999999999999999855 78899999999
Q ss_pred eeeecCCCccc-cCcc--ccCCCCCcEEeecCCcccccc--hhhcccccCCeEeecccCCCcccccccccCccCCc--cc
Q 047503 605 YLSVRNTKVKV-LPKS--IGRLLNLQTLDLKHSLVTQLP--VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSL--TD 677 (920)
Q Consensus 605 ~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l--~~ 677 (920)
+|+|++|.+.. +|.. ++++++|++|+|++|.+..++ ..++++++|++|++++|.... ..+..++.+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-----~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-----VCEHELEPLQGKT 175 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-----CCSGGGHHHHHCS
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-----eCHHHcccccCCc
Confidence 99999999875 5655 889999999999999888663 578999999999999874322 233334444 55
Q ss_pred CccccccccC--chhHHhcccCCC------CcEEEEEecCCcch---hH-------------------------------
Q 047503 678 LQKLYIVQAN--STILKELRKLRQ------LRKLGIQLTNDDGK---NL------------------------------- 715 (920)
Q Consensus 678 L~~L~~~~~~--~~~~~~l~~l~~------L~~L~l~~~~~~~~---~l------------------------------- 715 (920)
|+.|++..+. ...+..++.+.+ |+.|+++.+..... .+
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 6666555544 111222222222 55555542211100 00
Q ss_pred -HHHhcc--CCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CC-CCCccccCCCCcceEEEEeeccCCCcccc
Q 047503 716 -CASIAD--MENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MK-NLPDWIFKLKNLVRIGLYWSELTNDPMNV 790 (920)
Q Consensus 716 -~~~l~~--~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~-~lp~~~~~l~~L~~L~L~~~~l~~~~~~~ 790 (920)
...+.. .++|+.|++++|..... ....+...+ +|+.|+|+++ .. ..|..+..+++|+.|+|++|.+....+..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSL-NSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEE-CSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred ChhhhhccccCCccEEECCCCccccc-ChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 011111 24677777776654432 123344455 7777777765 22 23455667777777777777776666667
Q ss_pred cCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcc--------
Q 047503 791 LQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAG-------- 862 (920)
Q Consensus 791 l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-------- 862 (920)
+.++++|+.|+|++|.+....+.....+++|+.|+++++. ++.++ .+|+|+.|.+++|. +..+|..
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSGNK-LVTLPKINLTANLIH 407 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEESCC-CCCCCCCCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc----CCCCcchhccCCCC-cccccccccccceee
Confidence 7777777777777765544333334567777777777653 33222 25666666666665 2333322
Q ss_pred --------------cCCCCCCCEEEEecCh
Q 047503 863 --------------IEHLRNLEILKFCGML 878 (920)
Q Consensus 863 --------------l~~l~~L~~L~l~~~~ 878 (920)
+..+++|+.|+++++.
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCc
Confidence 3467888888888874
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=236.28 Aligned_cols=331 Identities=15% Similarity=0.112 Sum_probs=219.1
Q ss_pred eEEEEecCccccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCC
Q 047503 534 RRISINQSLNNVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTK 612 (920)
Q Consensus 534 r~lsl~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 612 (920)
+++.+.++.....+..-.++++.|.+.++.. ....+..|.++++|++|+|++|.+..+ |..++++.+|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4566666554222222237889988877654 234456789999999999999999976 6789999999999999999
Q ss_pred ccccCccccCCCCCcEEeecCCcccc--cchhhcccccCCeEeecccCCCcccccccccCccCCcccC--ccccccccCc
Q 047503 613 VKVLPKSIGRLLNLQTLDLKHSLVTQ--LPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDL--QKLYIVQANS 688 (920)
Q Consensus 613 i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L--~~L~~~~~~~ 688 (920)
+..+|.. .+++|++|++++|.++. +|..++++++|++|++++|.... ..++.+++| ++|++..+..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--------hhccccccceeeEEEeecccc
Confidence 9999988 89999999999999886 57899999999999999974322 235567777 8888877642
Q ss_pred ----hhHHhcc--------------------------cCCCCcEEEEEecC--Cc---chhHHHHhccCC----------
Q 047503 689 ----TILKELR--------------------------KLRQLRKLGIQLTN--DD---GKNLCASIADME---------- 723 (920)
Q Consensus 689 ----~~~~~l~--------------------------~l~~L~~L~l~~~~--~~---~~~l~~~l~~~~---------- 723 (920)
..+..+. .+++|+.|+++.+. .. .......+..++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc
Confidence 1222222 36667777777432 00 011112344444
Q ss_pred -----------------CCCEEEEeeCCCCcccccccC-----CCCc-------------------------ccccEEEE
Q 047503 724 -----------------NLESLTVESTSREETFDIQSL-----GSPP-------------------------QYLEHLYL 756 (920)
Q Consensus 724 -----------------~L~~L~L~~~~~~~~~~l~~l-----~~~~-------------------------~~L~~L~L 756 (920)
+|++|++++|...+.++ ..+ ...+ .+|+.|.+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD-FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC-CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccc-cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 45555555543322211 111 1222 12444444
Q ss_pred eccC-CCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCC--eeeEccCCccccceeeeccCCCCc
Q 047503 757 VGSM-KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYE--KLHFKDGWFPRLQRLVLLDLKGVT 833 (920)
Q Consensus 757 ~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~ 833 (920)
+++. ...+ ....+++|++|+|++|.+.+..+..++.+++|+.|+|++|.+.. .++...+.+++|++|++++|....
T Consensus 310 ~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 310 SGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp ESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 4431 1111 12578999999999999988788889999999999999998775 444446789999999999876443
Q ss_pred eeeEc-CCCCccccEEEEecCCC---------------------CCccCcccCCCCCCCEEEEecCh
Q 047503 834 LMMID-KGAMPCLRELKIGPCPL---------------------LKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 834 ~~~~~-~~~~~~L~~L~l~~c~~---------------------l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.++.. ...+++|+.|++++|.. ++.+|..+..+++|++|++++|.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence 24432 33444444444444443 33555555566666666666654
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.3e-22 Score=239.89 Aligned_cols=280 Identities=16% Similarity=0.199 Sum_probs=233.1
Q ss_pred cCCeeeEEEccCCCCCcCccc-ccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccchh-hcccccCCeE
Q 047503 576 EFKLMKVLDFEDAPIEFLPEE-VGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYL 652 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L 652 (920)
.+.++++|+++++.+..+|.. ++.+++|++|+|++|.+..+|. .++.+++|++|+|++|.++.+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988865 6789999999999999998875 899999999999999999988764 7999999999
Q ss_pred eecccCCCcccccccccCc-cCCcccCccccccccC--chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEE
Q 047503 653 LVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLT 729 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~ 729 (920)
++++|. ...+|.. ++.+++|++|++..+. ...+..++.+++|+.|+++.+..... .+..+++|+.|+
T Consensus 129 ~L~~n~------l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERND------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHAN 198 (597)
T ss_dssp ECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEE
T ss_pred EeeCCC------CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhhh
Confidence 999973 3356655 5899999999999887 33445688999999999985544332 256789999999
Q ss_pred EeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCC
Q 047503 730 VESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY 808 (920)
Q Consensus 730 L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 808 (920)
+++|.... +..++ +|+.|+++++ ...+|..+ .++|+.|+|++|.+++ ++.++.+|+|+.|+|++|.+.
T Consensus 199 l~~n~l~~------l~~~~-~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 199 VSYNLLST------LAIPI-AVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CCSSCCSE------EECCT-TCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred cccCcccc------ccCCc-hhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 99886543 23344 8999999987 33444332 3799999999999876 477899999999999999888
Q ss_pred CeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 809 EKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 809 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
...+...+.+++|+.|++++| .+..++...+.+|+|+.|+|++|. +..+|..+..+++|+.|++++|+
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 776767788999999999997 567788777889999999999998 56899999999999999999987
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=5e-22 Score=233.22 Aligned_cols=178 Identities=18% Similarity=0.203 Sum_probs=142.9
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCcc-ccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 628 (920)
.+.+++|.+.++.. ....+..|.++++|++|++++|.+..++ ..++++.+|++|++++|.+..+|.. ++++++|++
T Consensus 25 ~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 46888888877653 2334556899999999999999998665 7899999999999999999988876 999999999
Q ss_pred EeecCCcccc--cchhhcccccCCeEeecccCCCccccccccc-CccCCcccCccccccccC--chhHHhcccCCCCcEE
Q 047503 629 LDLKHSLVTQ--LPVEIKNLKKLRYLLVYHSDNGTHERGVKIQ-EGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKL 703 (920)
Q Consensus 629 L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p-~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L 703 (920)
|++++|.++. .|..+.++++|++|++++|. ....+| ..++.+++|++|++..+. ...+..+..+++|+.|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-----TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCc-----cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 9999999885 46789999999999999973 223444 468999999999999887 3456778899999999
Q ss_pred EEEecCCcchhHHHH-hccCCCCCEEEEeeCCCCc
Q 047503 704 GIQLTNDDGKNLCAS-IADMENLESLTVESTSREE 737 (920)
Q Consensus 704 ~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~ 737 (920)
+++.+... .++.. +..+++|+.|++++|...+
T Consensus 178 ~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 178 TLHLSESA--FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEECSBST--THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ecccCccc--ccchhhHhhcccccEEEccCCcccc
Confidence 99854332 23333 4568999999999887654
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=238.39 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccC-ccccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~ 628 (920)
.+.+++|.+.++.. ....+..|.++++|++|+|++|.+..++ ..++++.+|++|++++|.+..+| ..++++++|++
T Consensus 27 ~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 35688887766543 2334456899999999999999998764 67899999999999999999876 67999999999
Q ss_pred EeecCCcccccch-hhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC
Q 047503 629 LDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 629 L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
|++++|.++.+|. .++++++|++|++++|... ...+|..++++++|++|++..+.
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~----~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQ----SFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC----CCCCCGGGGGCTTCCEEECTTSC
T ss_pred ccccccccccCCCccccccccccEEecCCCccc----eecChhhhcccCCCCEEeCcCCc
Confidence 9999999998876 5999999999999997422 22467888999999999988765
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.5e-22 Score=229.90 Aligned_cols=319 Identities=13% Similarity=0.062 Sum_probs=235.3
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCC-cC-cccccCcccCceeeecCCCcccc-CccccCCCCCc
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIE-FL-PEEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQ 627 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~ 627 (920)
.++++.|.+.++.. ....+..|.++++|++|++++|.+. .+ |..++++.+|++|+|++|.+..+ |..++++++|+
T Consensus 29 ~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 29 PAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 36788888776543 2344567889999999999999886 44 56789999999999999998866 77899999999
Q ss_pred EEeecCCcccc-cchh--hcccccCCeEeecccCCCcccccccccCc-cCCcccCccccccccC--chhHHhcccC--CC
Q 047503 628 TLDLKHSLVTQ-LPVE--IKNLKKLRYLLVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQAN--STILKELRKL--RQ 699 (920)
Q Consensus 628 ~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~--~~~~~~l~~l--~~ 699 (920)
+|++++|.++. +|.. +..+++|++|++++|.. ....|.. ++.+++|++|++..+. ...+..+..+ .+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-----CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCcc-----CccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 99999998875 4444 88999999999998733 2223444 7889999999998877 2334445554 46
Q ss_pred CcEEEEEecCCcc-------hhHHHHhccCCCCCEEEEeeCCCCcccc--cccCCCCcccccEEEEeccCC--------C
Q 047503 700 LRKLGIQLTNDDG-------KNLCASIADMENLESLTVESTSREETFD--IQSLGSPPQYLEHLYLVGSMK--------N 762 (920)
Q Consensus 700 L~~L~l~~~~~~~-------~~l~~~l~~~~~L~~L~L~~~~~~~~~~--l~~l~~~~~~L~~L~L~~~~~--------~ 762 (920)
|+.|+++.+.... ......+..+++|+.|++++|...+..+ +......+ +|+.|.++++.. .
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT-KIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC-CEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc-ceeeEeeccccccccccchhh
Confidence 6666666222111 1112224456789999999997765332 11111224 889999887521 1
Q ss_pred C----Ccccc--CCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCcee-
Q 047503 763 L----PDWIF--KLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLM- 835 (920)
Q Consensus 763 l----p~~~~--~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~- 835 (920)
+ +..+. ..++|+.|+|++|.+....+..++.+++|+.|+|++|.+....+.....+++|++|++++|.. +.+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~ 339 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEEC
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcC
Confidence 1 11122 237899999999999887888899999999999999988765555667899999999999854 444
Q ss_pred eEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 836 MIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 836 ~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+...+.+++|+.|++++|......|..+..+++|++|+++++.
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 4556789999999999998655558889999999999999985
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.5e-22 Score=224.75 Aligned_cols=274 Identities=17% Similarity=0.157 Sum_probs=218.7
Q ss_pred hhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeE
Q 047503 573 LVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYL 652 (920)
Q Consensus 573 ~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 652 (920)
.+.++++|++|++++|.+..+| .++.+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 3578899999999999999887 6899999999999999999987 889999999999999999986 8999999999
Q ss_pred eecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEee
Q 047503 653 LVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVES 732 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~ 732 (920)
++++|... .+| ++.+++|++|++..+....+ .++.+++|+.|+++.+..... + .+..+++|+.|++++
T Consensus 112 ~L~~N~l~------~l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~-~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 112 NCDTNKLT------KLD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITK-L--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp ECCSSCCS------CCC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCC-C--CCTTCTTCCEEECCS
T ss_pred ECCCCcCC------eec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccc-c--ccccCCcCCEEECCC
Confidence 99997432 233 78999999999998873333 488899999999984422221 1 367889999999999
Q ss_pred CCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCee
Q 047503 733 TSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKL 811 (920)
Q Consensus 733 ~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~ 811 (920)
|..... + +..++ +|+.|+++++ ...++ +..+++|+.|+|++|.+.+. + ++.+++|+.|++++|.+...
T Consensus 180 n~l~~l-~---l~~l~-~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~- 248 (457)
T 3bz5_A 180 NKITEL-D---VSQNK-LLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTEL- 248 (457)
T ss_dssp SCCCCC-C---CTTCT-TCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCC-
T ss_pred Ccccee-c---cccCC-CCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCc-
Confidence 977652 2 55566 9999999987 34453 78899999999999999873 3 88999999999998876643
Q ss_pred eEccCCccccc----------eeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCc--------ccCCCCCCCEEE
Q 047503 812 HFKDGWFPRLQ----------RLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPA--------GIEHLRNLEILK 873 (920)
Q Consensus 812 ~~~~~~~~~L~----------~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~--------~l~~l~~L~~L~ 873 (920)
+ .+.|++|+ .|++.+|..+..++ .+.+++|+.|++++|+.++.+|. .+.++++|++|+
T Consensus 249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 2 34566555 55556665555555 46789999999999998877764 255667888888
Q ss_pred EecCh
Q 047503 874 FCGML 878 (920)
Q Consensus 874 l~~~~ 878 (920)
++++.
T Consensus 325 L~~N~ 329 (457)
T 3bz5_A 325 LNNTE 329 (457)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 77764
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=241.29 Aligned_cols=316 Identities=16% Similarity=0.160 Sum_probs=232.0
Q ss_pred CCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCC-CcC-cccccCcccCceeeecCCCcccc-CccccCCCCC
Q 047503 550 EDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPI-EFL-PEEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNL 626 (920)
Q Consensus 550 ~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L 626 (920)
..+.+++|.+.++.. ....+..|.++++|++|+|++|.. ..+ |..++++.+|++|+|++|.+..+ |..++++++|
T Consensus 22 lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 567899998877643 234456689999999999999954 455 67899999999999999999876 7889999999
Q ss_pred cEEeecCCcccc-cchh--hcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC--chhHHhcccC--CC
Q 047503 627 QTLDLKHSLVTQ-LPVE--IKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKL--RQ 699 (920)
Q Consensus 627 ~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l--~~ 699 (920)
++|+|++|.+.. +|.. +.++++|++|++++|.... ...+..++++++|++|++..+. ......+..+ ++
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS----LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC----CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc----cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 999999998875 5554 8899999999999974321 1233568899999999998876 2334455555 78
Q ss_pred CcEEEEEecCCcchhHHHHhccCC------CCCEEEEeeCCCCcccc--c------------------------------
Q 047503 700 LRKLGIQLTNDDGKNLCASIADME------NLESLTVESTSREETFD--I------------------------------ 741 (920)
Q Consensus 700 L~~L~l~~~~~~~~~l~~~l~~~~------~L~~L~L~~~~~~~~~~--l------------------------------ 741 (920)
|+.|+++.+.... ..+..+..+. +|+.|++++|......+ +
T Consensus 176 L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 176 LSFFSLAANSLYS-RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SCCCEECCSBSCC-CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred cceEECCCCcccc-ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 9999988543322 1122223333 49999999885432110 0
Q ss_pred ---ccCCC-CcccccEEEEeccC-C-CCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEcc
Q 047503 742 ---QSLGS-PPQYLEHLYLVGSM-K-NLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKD 815 (920)
Q Consensus 742 ---~~l~~-~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~ 815 (920)
..+.. .+.+|+.|+|+++. . ..|..+..+++|+.|+|++|.+....+..+.++++|+.|+|++|.+....+...
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 00011 12378889988763 2 346678889999999999999887777788899999999999888766556667
Q ss_pred CCccccceeeeccCCCCceeeE-cCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 816 GWFPRLQRLVLLDLKGVTLMMI-DKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 816 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
..+++|+.|++.++. +..++. .+..+++|+.|++++|. ++.++ .+++|+.|+++++.
T Consensus 335 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSGNK 392 (844)
T ss_dssp SSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEESCC
T ss_pred cCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC-CCccc----CCCCcchhccCCCC
Confidence 788999999999874 444433 45678999999999887 44444 37788888888875
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.8e-21 Score=234.61 Aligned_cols=339 Identities=19% Similarity=0.151 Sum_probs=205.6
Q ss_pred cCCCeeEEEEecCccc-cc--cccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcc-cccCcccCc
Q 047503 529 CCTKTRRISINQSLNN-VL--EWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPE-EVGNLFHLH 604 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~-~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~ 604 (920)
.+.++++|.+..+... .. ....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|. .++++.+|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 3467999999987652 22 255678888888776543 23445678899999999999999998886 589999999
Q ss_pred eeeecCCCccccC-ccccCCCCCcEEeecCCccccc-chhhcccccCCeEeecccCCCcccccccccCcc--CCcccCcc
Q 047503 605 YLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQL-PVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGF--GSLTDLQK 680 (920)
Q Consensus 605 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i--~~l~~L~~ 680 (920)
+|++++|.+..+| ..++++++|++|++++|.+... |..+.++++|++|++++|..... .+..+ ..+++|+.
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-----KSEELDIFANSSLKK 175 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-----CHHHHGGGTTCEESE
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-----CHHHhhccccccccE
Confidence 9999999998887 5688999999999999988765 45678899999999988743211 11111 12344444
Q ss_pred ccccccC-----------------------------------------------------chhHHhcccCC--CCcEEEE
Q 047503 681 LYIVQAN-----------------------------------------------------STILKELRKLR--QLRKLGI 705 (920)
Q Consensus 681 L~~~~~~-----------------------------------------------------~~~~~~l~~l~--~L~~L~l 705 (920)
|++..+. ...+..+..++ +|+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 4444332 01111222222 2555555
Q ss_pred EecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccC-C------CCCc----cccCCCCcc
Q 047503 706 QLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSM-K------NLPD----WIFKLKNLV 774 (920)
Q Consensus 706 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~------~lp~----~~~~l~~L~ 774 (920)
+.+.... ..+..+..+++|+.|++++|...+.. ...+...+ +|+.|+++++. . .+|. .+..+++|+
T Consensus 256 s~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~-~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 256 SYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCT-TCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred CCCCcCc-cCcccccCcccccEeeCCCCccCccC-hhhhcCCC-CccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 4322211 11234556667777777666544322 23344455 77777776542 1 3443 566778888
Q ss_pred eEEEEeeccCCCcccccCCCcccceeEEecccCC-CeeeE---ccCCccccceeeeccCCCCceeeEcCCCCccccEEEE
Q 047503 775 RIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY-EKLHF---KDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKI 850 (920)
Q Consensus 775 ~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~-~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 850 (920)
.|+|++|.+.+..+..+.++++|+.|+|++|... ..++. .....++|+.|++.+|......+.....+++|+.|++
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 8888888887777777888888888888766432 11110 0001235555555554332222333445555666666
Q ss_pred ecCCCCCccC-cccCCCCCCCEEEEecC
Q 047503 851 GPCPLLKEIP-AGIEHLRNLEILKFCGM 877 (920)
Q Consensus 851 ~~c~~l~~lp-~~l~~l~~L~~L~l~~~ 877 (920)
++|.....+| ..+..+++|++|++++|
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCcCccccCcccccCcccccEEecCCC
Confidence 5555433343 34455555555555554
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1e-21 Score=230.81 Aligned_cols=334 Identities=14% Similarity=0.124 Sum_probs=220.7
Q ss_pred CCeeEEEEecCccccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeec
Q 047503 531 TKTRRISINQSLNNVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVR 609 (920)
Q Consensus 531 ~~~r~lsl~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~ 609 (920)
...+++.+.++.....+..-.+.+++|.+.++.. ....+..|.++++|++|+|++|.+..+ |..++++.+|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3447788877665322222347889988877654 234456789999999999999999966 6789999999999999
Q ss_pred CCCccccCccccCCCCCcEEeecCCcccccc--hhhcccccCCeEeecccCCCcccccccccCccCCcccC--ccccccc
Q 047503 610 NTKVKVLPKSIGRLLNLQTLDLKHSLVTQLP--VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDL--QKLYIVQ 685 (920)
Q Consensus 610 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L--~~L~~~~ 685 (920)
+|.+..+|.. .+++|++|++++|.++.+| ..+.++++|++|++++|.... ..++.+++| ++|++..
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--------~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--------LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--------TTTGGGTTSCEEEEEEEE
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--------CchhhhhhceeeEEEeec
Confidence 9999999988 8999999999999998765 789999999999999974321 234455555 8888776
Q ss_pred cCc----hhHHhcc--------------------------cCCCCcEEEEEecCCcch---hHHHHhcc-----------
Q 047503 686 ANS----TILKELR--------------------------KLRQLRKLGIQLTNDDGK---NLCASIAD----------- 721 (920)
Q Consensus 686 ~~~----~~~~~l~--------------------------~l~~L~~L~l~~~~~~~~---~l~~~l~~----------- 721 (920)
+.. ..+..+. .+++|+.|+++.+..... .....+..
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 532 1111111 233444444442211000 01111122
Q ss_pred ----------------CCCCCEEEEeeCCCCcccccccC----CCCc-------------------------ccccEEEE
Q 047503 722 ----------------MENLESLTVESTSREETFDIQSL----GSPP-------------------------QYLEHLYL 756 (920)
Q Consensus 722 ----------------~~~L~~L~L~~~~~~~~~~l~~l----~~~~-------------------------~~L~~L~L 756 (920)
.++|++|++++|...+.++...+ .... .+|++|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 23677777776654432211100 0000 13566666
Q ss_pred eccC-CCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCC--eeeEccCCccccceeeeccCCCCc
Q 047503 757 VGSM-KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYE--KLHFKDGWFPRLQRLVLLDLKGVT 833 (920)
Q Consensus 757 ~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~ 833 (920)
+++. ..++ ....+++|++|+|++|.+.+..+..++++++|+.|+|++|.+.. .++.....+++|+.|+++++....
T Consensus 339 ~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 339 SDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp ESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 5542 1111 12678999999999999988788889999999999999987664 334445778999999998875433
Q ss_pred eeeEc-CCCC----------------------ccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 834 LMMID-KGAM----------------------PCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 834 ~~~~~-~~~~----------------------~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.++.. ...+ ++|+.|++++|. ++.+|..+..+++|++|+++++.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 23321 2222 466666666664 55677777777888888888764
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=7.2e-22 Score=238.14 Aligned_cols=317 Identities=17% Similarity=0.127 Sum_probs=191.7
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCc-cccCCCCCcEE
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTL 629 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L 629 (920)
+++++|.+.++.. ....+..|.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|. .++++++|++|
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 6788888876543 234456689999999999999999866 6778999999999999999999987 58999999999
Q ss_pred eecCCcccccc-hhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC--chhHHhc--ccCCCCcEEE
Q 047503 630 DLKHSLVTQLP-VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKEL--RKLRQLRKLG 704 (920)
Q Consensus 630 ~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l--~~l~~L~~L~ 704 (920)
++++|.++.+| ..+.++++|++|++++|.. ....|..++.+++|++|++..+. ......+ ..+++|+.|+
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-----SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-----SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcc-----cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 99999999887 4699999999999999743 22345668899999999998876 2223333 3457888888
Q ss_pred EEecCCcchhHHHHhccCCC---------------------------CCEEEEeeCCCCcccccccCCCCc-ccccEEEE
Q 047503 705 IQLTNDDGKNLCASIADMEN---------------------------LESLTVESTSREETFDIQSLGSPP-QYLEHLYL 756 (920)
Q Consensus 705 l~~~~~~~~~l~~~l~~~~~---------------------------L~~L~L~~~~~~~~~~l~~l~~~~-~~L~~L~L 756 (920)
++.+.... ..+..+..+++ |+.|++++|...+..+ ..+...+ .+|+.|+|
T Consensus 178 L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 178 LSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLDL 255 (680)
T ss_dssp CTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-TTTGGGGGSCCCEEEC
T ss_pred CCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-hHhhccCcCCCCEEEC
Confidence 87432221 11223344444 4455554443332211 1111111 13555555
Q ss_pred eccC-CC-CCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCe-----eeE----ccCCccccceee
Q 047503 757 VGSM-KN-LPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEK-----LHF----KDGWFPRLQRLV 825 (920)
Q Consensus 757 ~~~~-~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~-----~~~----~~~~~~~L~~L~ 825 (920)
+++. .. .|.++..+++|+.|+|++|.+.+..+..++++++|+.|+|++|..... ++. ....+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 5541 21 234455555566666655555544444555555666655554432211 111 223455555555
Q ss_pred eccCCCCceeeEcCCCCccccEEEEecCCC-CCccCcc-cCC--CCCCCEEEEecC
Q 047503 826 LLDLKGVTLMMIDKGAMPCLRELKIGPCPL-LKEIPAG-IEH--LRNLEILKFCGM 877 (920)
Q Consensus 826 l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~-l~~lp~~-l~~--l~~L~~L~l~~~ 877 (920)
+.++......+.....+++|+.|++++|.. +..++.. +.. .++|+.|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 555432222222234555666666655542 2222221 111 235666666554
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.4e-21 Score=210.18 Aligned_cols=283 Identities=18% Similarity=0.211 Sum_probs=201.2
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCccccc-chhhcccccCCeEeec
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQL-PVEIKNLKKLRYLLVY 655 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~ 655 (920)
.+|++++++++.+..+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367888888888887776553 578888888888887765 577888888888888877766 6678888888888888
Q ss_pred ccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEEEecCCcc-hhHHHHhccCCCCCEEEEee
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDG-KNLCASIADMENLESLTVES 732 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~ 732 (920)
+|.. ..+|..+. ++|++|++..+. ......+..+++|+.|+++.+.... ...+..+..+++|+.|++++
T Consensus 109 ~n~l------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 109 KNQL------KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp SSCC------SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CCcC------CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 7632 24555443 677888777766 2334457788888888887443321 12345677888999999998
Q ss_pred CCCCcccccccCCCCcccccEEEEecc-CCC-CCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCe
Q 047503 733 TSREETFDIQSLGSPPQYLEHLYLVGS-MKN-LPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEK 810 (920)
Q Consensus 733 ~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~ 810 (920)
|...... ..+ .+ +|++|+++++ ... .|.++..+++|+.|+|++|.+.......+..+++|+.|+|++|.+. .
T Consensus 181 n~l~~l~--~~~--~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 181 TNITTIP--QGL--PP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp SCCCSCC--SSC--CT-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred CccccCC--ccc--cc-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 8765421 111 23 8999999886 333 3677888999999999999887766667888999999999988765 4
Q ss_pred eeEccCCccccceeeeccCCCCceeeEcC-------CCCccccEEEEecCCCCC--ccCcccCCCCCCCEEEEecC
Q 047503 811 LHFKDGWFPRLQRLVLLDLKGVTLMMIDK-------GAMPCLRELKIGPCPLLK--EIPAGIEHLRNLEILKFCGM 877 (920)
Q Consensus 811 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~ 877 (920)
++.....+++|++|++.++. ++.++... ...+.|+.|++.+|+... ..|..+..+.+|+.|+++++
T Consensus 255 lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 55556678899999998864 44443211 135788999999998532 34567888889999988875
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.8e-21 Score=212.58 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=189.6
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCccccc-chhhcccccCCeEeecc
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQL-PVEIKNLKKLRYLLVYH 656 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 656 (920)
+|++++++++.+..+|..+. .+|++|++++|.+..+| ..+.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56677777777766666553 46777777777766664 3566777777777777766655 45566777777777766
Q ss_pred cCCCcccccccccCccCCcccCccccccccCc--hhHHhcccCCCCcEEEEEecCCcc-hhHHHHhccCCCCCEEEEeeC
Q 047503 657 SDNGTHERGVKIQEGFGSLTDLQKLYIVQANS--TILKELRKLRQLRKLGIQLTNDDG-KNLCASIADMENLESLTVEST 733 (920)
Q Consensus 657 ~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~ 733 (920)
|.. ..+|..+. ++|++|++..+.. .....+..+++|+.|+++.+.... ...+..+..+ +|+.|++++|
T Consensus 112 n~l------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 112 NHL------VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp SCC------CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CcC------CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 522 23444443 5677776666652 122336667777777776443321 1123344555 8888888888
Q ss_pred CCCcccccccCCCCcccccEEEEecc-CCCC-CccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCee
Q 047503 734 SREETFDIQSLGSPPQYLEHLYLVGS-MKNL-PDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKL 811 (920)
Q Consensus 734 ~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~l-p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~ 811 (920)
..... + .. .+++|++|+++++ ...+ |..+..+++|+.|+|++|.+.......++.+++|+.|+|++|.+. .+
T Consensus 183 ~l~~l-~-~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 183 KLTGI-P-KD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp BCSSC-C-SS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCcc-C-cc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 66542 1 11 1138999999887 3444 467888999999999999998877778899999999999988766 55
Q ss_pred eEccCCccccceeeeccCCCCceeeEc-C------CCCccccEEEEecCCCC--CccCcccCCCCCCCEEEEecCh
Q 047503 812 HFKDGWFPRLQRLVLLDLKGVTLMMID-K------GAMPCLRELKIGPCPLL--KEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+.....+++|+.|++.++. ++.++.. + ..++.|+.|++.+|+.. ...|..+..+++|+.|+++++.
T Consensus 257 p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5556778999999999874 4554322 1 12578999999999964 3456678899999999999875
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.6e-21 Score=210.69 Aligned_cols=247 Identities=18% Similarity=0.151 Sum_probs=108.3
Q ss_pred eeeEEEccCCCCC---cCcccccCcccCceeeecC-CCcc-ccCccccCCCCCcEEeecCCccc-ccchhhcccccCCeE
Q 047503 579 LMKVLDFEDAPIE---FLPEEVGNLFHLHYLSVRN-TKVK-VLPKSIGRLLNLQTLDLKHSLVT-QLPVEIKNLKKLRYL 652 (920)
Q Consensus 579 ~Lr~L~L~~~~~~---~lp~~i~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L 652 (920)
+++.|+|+++.+. .+|..++++++|++|++++ +.+. .+|..++++++|++|++++|.++ .+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4445555555444 2444455555555555542 3333 44444555555555555555444 444445555555555
Q ss_pred eecccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCC-CCcEEEEEecCCcchhHHHHhccCCCCCEEE
Q 047503 653 LVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLR-QLRKLGIQLTNDDGKNLCASIADMENLESLT 729 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~ 729 (920)
++++|. ....+|..++.+++|++|++..+. ...+..+..++ +|+.|+++.+.... ..+..+..++ |+.|+
T Consensus 131 ~Ls~N~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 131 DFSYNA-----LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVD 203 (313)
T ss_dssp ECCSSE-----EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCC-CSEEE
T ss_pred eCCCCc-----cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCCc-ccEEE
Confidence 554431 111333344444444444444333 12222333333 33333333211110 1122233333 55555
Q ss_pred EeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCC
Q 047503 730 VESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYE 809 (920)
Q Consensus 730 L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~ 809 (920)
+++|...+ ..|..+..+++|+.|+|++|.+.+..+ .+..+++|+.|+|++|.+..
T Consensus 204 Ls~N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 204 LSRNMLEG------------------------DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEE------------------------CCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred CcCCcccC------------------------cCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccC
Confidence 55443221 233344445555555555555443222 24455555555555554443
Q ss_pred eeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCc
Q 047503 810 KLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKE 858 (920)
Q Consensus 810 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 858 (920)
.++.....+++|++|+++++.....+|.. +.+++|+.|++.+|+.+..
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 34433444555555555554332233332 4555555555555554433
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=8.2e-21 Score=227.17 Aligned_cols=346 Identities=16% Similarity=0.083 Sum_probs=229.8
Q ss_pred cCCCeeEEEEecCccccc---cccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcc-cccCcccCc
Q 047503 529 CCTKTRRISINQSLNNVL---EWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPE-EVGNLFHLH 604 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~---~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~ 604 (920)
.|..+++|.+..+..... ....+++|+.|.+.++.. ..+.+..|.++++|++|+|++|.++.+|. .++++.+|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 456789999998876322 345677777777765532 23456678999999999999999998874 578999999
Q ss_pred eeeecCCCccccCc-cccCCCCCcEEeecCCcccc--cchhhcccccCCeEeecccCCCcccc-----------------
Q 047503 605 YLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQ--LPVEIKNLKKLRYLLVYHSDNGTHER----------------- 664 (920)
Q Consensus 605 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~----------------- 664 (920)
+|+|++|.+..+|. .++++++|++|++++|.++. +|..+..+++|++|++++|.+.....
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 99999999998876 48899999999999998874 57788899999999998875411000
Q ss_pred -----cccccCcc-------------------------------------------------------------------
Q 047503 665 -----GVKIQEGF------------------------------------------------------------------- 672 (920)
Q Consensus 665 -----~~~~p~~i------------------------------------------------------------------- 672 (920)
...++.+.
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 00000000
Q ss_pred -------------------------------------CCcccCccccccccCc---------------------hhHHhc
Q 047503 673 -------------------------------------GSLTDLQKLYIVQANS---------------------TILKEL 694 (920)
Q Consensus 673 -------------------------------------~~l~~L~~L~~~~~~~---------------------~~~~~l 694 (920)
....+|+.|.+..+.. ......
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0001111121111110 000011
Q ss_pred ccCCCCcEEEEEecCCcc-hhHHHHhccCCCCCEEEEeeCCCC-----------------------cccccccCCCCccc
Q 047503 695 RKLRQLRKLGIQLTNDDG-KNLCASIADMENLESLTVESTSRE-----------------------ETFDIQSLGSPPQY 750 (920)
Q Consensus 695 ~~l~~L~~L~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~~~~~-----------------------~~~~l~~l~~~~~~ 750 (920)
..+++|+.|.++.+.... ...+.....+.+|+.|++..+... ...+...+...+ +
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-N 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-T
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-c
Confidence 245778888877432211 112233445556666666554321 111112222333 6
Q ss_pred ccEEEEeccC--CCCCccccCCCCcceEEEEeeccCC-CcccccCCCcccceeEEecccCCCeeeEccCCccccceeeec
Q 047503 751 LEHLYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTN-DPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLL 827 (920)
Q Consensus 751 L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 827 (920)
++.++++.+. ...|..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.+....+....++++|++|+|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 6666666542 2345566778999999999886443 455678899999999999998776555566789999999999
Q ss_pred cCCCCcee-eEcCCCCccccEEEEecCCCCCccCcccCCC-CCCCEEEEecCh
Q 047503 828 DLKGVTLM-MIDKGAMPCLRELKIGPCPLLKEIPAGIEHL-RNLEILKFCGML 878 (920)
Q Consensus 828 ~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~~~ 878 (920)
++. +..+ +..++.+++|+.|+|++|......|..+.++ ++|+.|+++++|
T Consensus 527 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 527 HNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 975 4554 4456789999999999999666667788888 689999999865
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.3e-21 Score=207.25 Aligned_cols=244 Identities=18% Similarity=0.235 Sum_probs=186.5
Q ss_pred ccCceeeecCCCcc---ccCccccCCCCCcEEeecC-Cccc-ccchhhcccccCCeEeecccCCCcccccccccCccCCc
Q 047503 601 FHLHYLSVRNTKVK---VLPKSIGRLLNLQTLDLKH-SLVT-QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSL 675 (920)
Q Consensus 601 ~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l 675 (920)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|. ....+|..++.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCcCCHHHhCC
Confidence 57899999999988 5899999999999999994 7666 789999999999999999973 233567777788
Q ss_pred ccCccccccccCc--hhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccE
Q 047503 676 TDLQKLYIVQANS--TILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEH 753 (920)
Q Consensus 676 ~~L~~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 753 (920)
++|++|++..+.. ..+.. +..+++|++|++++|...+.++ ..+...+++|+.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-------------------------~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~ 178 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-------------------------ISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTS 178 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-------------------------GGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCE
T ss_pred CCCCEEeCCCCccCCcCChH-------------------------HhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcE
Confidence 8888887776641 23333 4445555555555554432221 223333335666
Q ss_pred EEEeccC--CCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCC
Q 047503 754 LYLVGSM--KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKG 831 (920)
Q Consensus 754 L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 831 (920)
|+++++. +.+|..+..++ |+.|+|++|.+.+..+..+..+++|+.|+|++|.+...++. ...+++|++|+++++..
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 6666542 35677788887 99999999999888888999999999999999877654443 56789999999999876
Q ss_pred CceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 832 VTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 832 l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
...++...+.+++|+.|++++|+..+.+|.. ..+++|+.+++.++|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5567777888999999999999866678875 889999999999987
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=5.7e-20 Score=200.57 Aligned_cols=247 Identities=14% Similarity=0.091 Sum_probs=135.8
Q ss_pred hhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchh-hcccccCC
Q 047503 573 LVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLR 650 (920)
Q Consensus 573 ~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~ 650 (920)
.|.++++|++|++++|.+..+ |..++++++|++|++++|.+..+|..+. ++|++|++++|.++.+|.. +..+++|+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 345555555555555555433 4445555555555555555555554443 4555555555555544432 44555555
Q ss_pred eEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEE
Q 047503 651 YLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTV 730 (920)
Q Consensus 651 ~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L 730 (920)
+|++++|.... ....|..++.+ +|++|++..+. ... ++..+ .++|+.|++
T Consensus 151 ~L~l~~n~l~~---~~~~~~~~~~l-~L~~L~l~~n~----------------------l~~--l~~~~--~~~L~~L~l 200 (332)
T 2ft3_A 151 CIEMGGNPLEN---SGFEPGAFDGL-KLNYLRISEAK----------------------LTG--IPKDL--PETLNELHL 200 (332)
T ss_dssp EEECCSCCCBG---GGSCTTSSCSC-CCSCCBCCSSB----------------------CSS--CCSSS--CSSCSCCBC
T ss_pred EEECCCCcccc---CCCCcccccCC-ccCEEECcCCC----------------------CCc--cCccc--cCCCCEEEC
Confidence 55555542210 01122223333 44444443332 111 11111 157777777
Q ss_pred eeCCCCcccccccCCCCcccccEEEEecc-CCCC-CccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCC
Q 047503 731 ESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNL-PDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY 808 (920)
Q Consensus 731 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~l-p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 808 (920)
++|..... ....+...+ +|+.|+++++ ...+ |.++..+++|+.|+|++|.+. ..+..+..+++|+.|+|++|.+.
T Consensus 201 ~~n~i~~~-~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 201 DHNKIQAI-ELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CSSCCCCC-CTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-CHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 77765433 223455555 7888888876 3444 346788888999999888876 34455788888999998887655
Q ss_pred CeeeEcc------CCccccceeeeccCCCC--ceeeEcCCCCccccEEEEecCC
Q 047503 809 EKLHFKD------GWFPRLQRLVLLDLKGV--TLMMIDKGAMPCLRELKIGPCP 854 (920)
Q Consensus 809 ~~~~~~~------~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~c~ 854 (920)
....... ..+++|+.|++.+++.. ...+..+..+++|+.|++++|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3221111 12678899999987643 2233345678889999998875
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.7e-19 Score=204.59 Aligned_cols=302 Identities=22% Similarity=0.226 Sum_probs=209.5
Q ss_pred cCCCeeEEEEecCccccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeee
Q 047503 529 CCTKTRRISINQSLNNVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSV 608 (920)
Q Consensus 529 ~~~~~r~lsl~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 608 (920)
.+.+++++.+..+...... ...+.++.|.+.++.... ++. -.++|++|++++|.+..+| .++++.+|++|++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp-~~~~~L~~L~l~~n~l~~---l~~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKA---LSD---LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CCTTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSC---CCS---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CcCCCCEEEccCCcCCccc-cccCCCcEEECCCCccCc---ccC---CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 3467888888876552221 234778888776553211 111 1268999999999999888 5999999999999
Q ss_pred cCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCc
Q 047503 609 RNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANS 688 (920)
Q Consensus 609 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 688 (920)
++|.+..+|..+ .+|++|++++|.++.+| .++.+++|++|++++|... .+|.. .++|++|++..+..
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~------~l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK------KLPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS------SCCCC---CTTCCEEECCSSCC
T ss_pred CCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC------cCCCC---cCcccEEECcCCcC
Confidence 999999888754 58999999999999988 6899999999999987432 23432 25888888888773
Q ss_pred hhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccc
Q 047503 689 TILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWI 767 (920)
Q Consensus 689 ~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~ 767 (920)
..+..++.+++|+.|+++.+.... ++. ..++|+.|++++|...+. ...+.+|+.|+++++ ...+|..
T Consensus 228 ~~lp~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l~~l------~~~~~~L~~L~ls~N~l~~l~~~- 295 (454)
T 1jl5_A 228 EELPELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYLTDL------PELPQSLTFLDVSENIFSGLSEL- 295 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSSCCSEESCC-
T ss_pred CcccccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCccccc------CcccCcCCEEECcCCccCcccCc-
Confidence 344468889999999988543322 111 247899999998876542 122348999999886 3333321
Q ss_pred cCCCCcceEEEEeeccCCCcccccCCC-cccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCcccc
Q 047503 768 FKLKNLVRIGLYWSELTNDPMNVLQAL-PNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLR 846 (920)
Q Consensus 768 ~~l~~L~~L~L~~~~l~~~~~~~l~~l-p~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 846 (920)
.++|+.|++++|.+.+ +..+ ++|+.|++++|.+.+ ++ ..+++|++|++++|. ++.++. .+++|+
T Consensus 296 --~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp---~~~~~L~~L~L~~N~-l~~lp~---~l~~L~ 360 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LP---ALPPRLERLIASFNH-LAEVPE---LPQNLK 360 (454)
T ss_dssp --CTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred --CCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cc---ccCCcCCEEECCCCc-cccccc---hhhhcc
Confidence 2689999999998764 2344 489999999887654 33 247899999999874 555654 578999
Q ss_pred EEEEecCCCCC--ccCcccCCC-------------CCCCEEEEecCh
Q 047503 847 ELKIGPCPLLK--EIPAGIEHL-------------RNLEILKFCGML 878 (920)
Q Consensus 847 ~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~~~ 878 (920)
.|++++|+... .+|..+.++ ++|+.|++++++
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 99999998666 678888877 889999999876
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=6.2e-19 Score=206.08 Aligned_cols=255 Identities=21% Similarity=0.205 Sum_probs=188.0
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeeccc
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 657 (920)
..+++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 457888888888888887665 688888888888888877 56788888888888888876 6788888888876
Q ss_pred CCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCc
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREE 737 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~ 737 (920)
.+ ..+|. .+++|++|++..+....+.. .+++|+.|+++.+.... ++ ..+++|+.|++++|....
T Consensus 112 ~l------~~l~~---~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 112 PL------THLPA---LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CC------CCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC
T ss_pred cC------CCCCC---CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCC--cC---CccCCCCEEECCCCCCCC
Confidence 32 23443 45677788777766222221 24788888887543322 11 234689999999887654
Q ss_pred ccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccC
Q 047503 738 TFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDG 816 (920)
Q Consensus 738 ~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~ 816 (920)
. . ..+++|+.|+++++ +..+|.. +++|+.|++++|.+...+ ..+++|+.|+|++|.+.. ++ .
T Consensus 176 l---~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 176 L---P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp C---C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSC-CC---C
T ss_pred C---c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccC----CCCCCCCEEEccCCccCc-CC---C
Confidence 2 1 22348999999987 4556643 578999999999887433 235889999999886654 33 5
Q ss_pred CccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 817 WFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 817 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.+++|+.|++++| .++.++. .+++|+.|++++|. +..+|..+.++++|+.|++++++
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 6799999999987 4666654 67899999999986 66899999999999999999986
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4.2e-19 Score=193.60 Aligned_cols=264 Identities=14% Similarity=0.169 Sum_probs=208.2
Q ss_pred cccCceeeecCCCccccCccccCCCCCcEEeecCCcccccch-hhcccccCCeEeecccCCCcccccccccCccCCcccC
Q 047503 600 LFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDL 678 (920)
Q Consensus 600 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L 678 (920)
..+|++++++++.+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.. ....|..++.+++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L 102 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-----SKISPGAFAPLVKL 102 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-----CCBCTTTTTTCTTC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC-----CeeCHHHhcCCCCC
Confidence 4579999999999999998764 799999999999998876 699999999999999732 22347789999999
Q ss_pred ccccccccCc-hhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcc-cccccCCCCcccccEEEE
Q 047503 679 QKLYIVQANS-TILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREET-FDIQSLGSPPQYLEHLYL 756 (920)
Q Consensus 679 ~~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~L 756 (920)
++|++..+.. ..+..+ .++|+.|+++.+.... ..+..+..+++|+.|++++|..... .....+...+ +|+.|++
T Consensus 103 ~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l 178 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRI 178 (330)
T ss_dssp CEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEEC
T ss_pred CEEECCCCcCCccChhh--cccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEEC
Confidence 9999988872 222222 2789999998554332 2345678899999999999876532 2234455566 9999999
Q ss_pred ecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCcee
Q 047503 757 VGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLM 835 (920)
Q Consensus 757 ~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 835 (920)
+++ ...+|..+. ++|+.|+|++|.+....+..+..+++|+.|+|++|.+....+.....+++|+.|++.+| .+..+
T Consensus 179 ~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 255 (330)
T 1xku_A 179 ADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV 255 (330)
T ss_dssp CSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred CCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccC
Confidence 987 566776553 89999999999998877788999999999999998876544434567899999999997 46677
Q ss_pred eEcCCCCccccEEEEecCCCCCccCc-ccC------CCCCCCEEEEecCh
Q 047503 836 MIDKGAMPCLRELKIGPCPLLKEIPA-GIE------HLRNLEILKFCGML 878 (920)
Q Consensus 836 ~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~------~l~~L~~L~l~~~~ 878 (920)
+.....+++|+.|++++|+ ++.+|. .+. ..++|+.|++.++|
T Consensus 256 p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 7778889999999999998 555553 232 34789999999998
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=200.68 Aligned_cols=249 Identities=18% Similarity=0.211 Sum_probs=123.6
Q ss_pred eeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccchh-hcccccCCeEeec
Q 047503 579 LMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVY 655 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 655 (920)
+|++|++++|.+..+|. .++++++|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555554443 4555555555555555555443 3355555555555555555555544 4555555555555
Q ss_pred ccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCC
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSR 735 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 735 (920)
+|.. ..+|. ...+..+++|+.|+++.+.......+..+..+++|+.|++++|..
T Consensus 133 ~n~l------~~l~~--------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 133 GNPY------KTLGE--------------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TCCC------SSSCS--------------------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCC------cccCc--------------------hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 5421 11221 001233334444444422110101112334445555555555533
Q ss_pred CcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeE--
Q 047503 736 EETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHF-- 813 (920)
Q Consensus 736 ~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~-- 813 (920)
... .|.++..+++|+.|+|++|.+...+...+..+++|+.|+|++|.+......
T Consensus 187 ~~~------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 187 QSY------------------------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEE------------------------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred Ccc------------------------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 221 234445555555555555554332222333455555555555543321100
Q ss_pred -ccCCccccceeeeccCCCCc----eeeEcCCCCccccEEEEecCCCCCccCccc-CCCCCCCEEEEecCh
Q 047503 814 -KDGWFPRLQRLVLLDLKGVT----LMMIDKGAMPCLRELKIGPCPLLKEIPAGI-EHLRNLEILKFCGML 878 (920)
Q Consensus 814 -~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~ 878 (920)
.....+.++.+++.++..-. .++...+.+++|+.|++++|. ++.+|..+ ..+++|++|+++++|
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 01224455666665542211 233334568888889988886 56788774 788899999998875
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=7.6e-22 Score=226.29 Aligned_cols=345 Identities=15% Similarity=0.099 Sum_probs=236.2
Q ss_pred CCeeEEEEecCccc---ccc-ccCCCCceEEEeeccCCCC--cchhhhhhccCCeeeEEEccCCCCCc-Cccccc-Ccc-
Q 047503 531 TKTRRISINQSLNN---VLE-WTEDSKIRSVFFLNVDKLP--GSFMTKLVAEFKLMKVLDFEDAPIEF-LPEEVG-NLF- 601 (920)
Q Consensus 531 ~~~r~lsl~~~~~~---~~~-~~~~~~lrsL~~~~~~~~~--~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~-~l~- 601 (920)
..+++|.+..+... ... ...++++++|.+.++.... ...++..+..+++|++|+|++|.+.. .+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45778888766542 112 4567889999888765321 12445667888999999999998863 222332 344
Q ss_pred ---cCceeeecCCCcc-----ccCccccCCCCCcEEeecCCccccc-chhh-----cccccCCeEeecccCCCccccccc
Q 047503 602 ---HLHYLSVRNTKVK-----VLPKSIGRLLNLQTLDLKHSLVTQL-PVEI-----KNLKKLRYLLVYHSDNGTHERGVK 667 (920)
Q Consensus 602 ---~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~~~~~~~~~ 667 (920)
+|++|++++|.+. .+|..+.++++|++|++++|.++.. +..+ ..+++|++|++++|..... ....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-SCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-GHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-HHHH
Confidence 6999999999887 5688889999999999999987632 2222 2356899999998754321 1123
Q ss_pred ccCccCCcccCccccccccC--chhHHhcc-----cCCCCcEEEEEecCCcc---hhHHHHhccCCCCCEEEEeeCCCCc
Q 047503 668 IQEGFGSLTDLQKLYIVQAN--STILKELR-----KLRQLRKLGIQLTNDDG---KNLCASIADMENLESLTVESTSREE 737 (920)
Q Consensus 668 ~p~~i~~l~~L~~L~~~~~~--~~~~~~l~-----~l~~L~~L~l~~~~~~~---~~l~~~l~~~~~L~~L~L~~~~~~~ 737 (920)
++..+..+++|++|++..+. ...+..+. ..++|+.|+++.+.... ..++..+..+++|++|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45566778899999998877 22222232 35689999988443332 2467778889999999999886543
Q ss_pred cc--cc-ccCC-CCcccccEEEEeccC-CC-----CCccccCCCCcceEEEEeeccCCCcccccCC-----CcccceeEE
Q 047503 738 TF--DI-QSLG-SPPQYLEHLYLVGSM-KN-----LPDWIFKLKNLVRIGLYWSELTNDPMNVLQA-----LPNLLELRL 802 (920)
Q Consensus 738 ~~--~l-~~l~-~~~~~L~~L~L~~~~-~~-----lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~-----lp~L~~L~L 802 (920)
.. .+ ..+. ..+ +|++|+++++. .. ++..+..+++|+.|+|++|.+.+..+..+.. .++|+.|+|
T Consensus 242 ~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 21 00 1122 344 89999999873 22 5666777899999999999876544443332 379999999
Q ss_pred ecccCCCe----eeEccCCccccceeeeccCCCCceee-EcC-----CCCccccEEEEecCCCCC----ccCcccCCCCC
Q 047503 803 RDAYDYEK----LHFKDGWFPRLQRLVLLDLKGVTLMM-IDK-----GAMPCLRELKIGPCPLLK----EIPAGIEHLRN 868 (920)
Q Consensus 803 ~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~-----~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~ 868 (920)
++|.+... ++.....+++|++|++++|. ++... ... ..+++|++|++++|..-. .+|..+..+++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 98876543 22223356899999999874 44321 111 126799999999997443 67888888999
Q ss_pred CCEEEEecCh
Q 047503 869 LEILKFCGML 878 (920)
Q Consensus 869 L~~L~l~~~~ 878 (920)
|++|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 9999999986
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2.3e-19 Score=194.77 Aligned_cols=202 Identities=19% Similarity=0.275 Sum_probs=147.4
Q ss_pred hhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCC-cccccchhhcc-----
Q 047503 572 KLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHS-LVTQLPVEIKN----- 645 (920)
Q Consensus 572 ~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~----- 645 (920)
..+.++++|++|+|++|.+..+|..++++.+|++|+|++|.+..+|..++++++|++|++++| .+..+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 345679999999999999999999999999999999999999999999999999999999997 56688877654
Q ss_pred ----cccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhcc
Q 047503 646 ----LKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIAD 721 (920)
Q Consensus 646 ----l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~ 721 (920)
+++|++|++++|.+ ..+|..++.+++|++|++..+. ... ++..+..
T Consensus 178 ~~~~l~~L~~L~L~~n~l------~~lp~~l~~l~~L~~L~L~~N~----------------------l~~--l~~~l~~ 227 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGI------RSLPASIANLQNLKSLKIRNSP----------------------LSA--LGPAIHH 227 (328)
T ss_dssp CEEESTTCCEEEEEEECC------CCCCGGGGGCTTCCEEEEESSC----------------------CCC--CCGGGGG
T ss_pred hhccCCCCCEEECcCCCc------CcchHhhcCCCCCCEEEccCCC----------------------CCc--Cchhhcc
Confidence 88888888888632 2455555555555555444332 221 3334667
Q ss_pred CCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc--CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccce
Q 047503 722 MENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS--MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLE 799 (920)
Q Consensus 722 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~ 799 (920)
+++|+.|++++|...+.++ ..+..++ +|+.|+|++| .+.+|.++..+++|+.|+|++|.+.+..+..++++++|+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p-~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYP-PIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp CTTCCEEECTTCTTCCBCC-CCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCCCCEEECcCCcchhhhH-HHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 7888888888776554432 2344444 6777777664 3456767777777777777777777777777777777777
Q ss_pred eEEecc
Q 047503 800 LRLRDA 805 (920)
Q Consensus 800 L~L~~~ 805 (920)
+.+..+
T Consensus 306 l~l~~~ 311 (328)
T 4fcg_A 306 ILVPPH 311 (328)
T ss_dssp EECCGG
T ss_pred EeCCHH
Confidence 776644
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=6.6e-19 Score=210.60 Aligned_cols=318 Identities=19% Similarity=0.145 Sum_probs=210.2
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCcc-ccCCCCCcEE
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTL 629 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 629 (920)
+.++.|.+.++.. ..+.+..|.++++|++|+|++|.++.+| ..+++|.+|++|+|++|.++.+|.. +.+|++|++|
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 4677777665433 2345567899999999999999999886 4689999999999999999999864 7899999999
Q ss_pred eecCCcccccchh-hcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCc--hhHHhcc-----------
Q 047503 630 DLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANS--TILKELR----------- 695 (920)
Q Consensus 630 ~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~--~~~~~l~----------- 695 (920)
++++|.++.+|.. ++++++|++|++++|.+. ....|..++.+++|++|++..+.. ..+..+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC----CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccc----cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 9999999999864 899999999999997432 224566777888888888766541 0011110
Q ss_pred -----------------------------------------cCCCCcEEEEEecCC------------------------
Q 047503 696 -----------------------------------------KLRQLRKLGIQLTND------------------------ 710 (920)
Q Consensus 696 -----------------------------------------~l~~L~~L~l~~~~~------------------------ 710 (920)
.+..++...+.....
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 111111111100000
Q ss_pred --------c--------------------------chhH---------------------------------------HH
Q 047503 711 --------D--------------------------GKNL---------------------------------------CA 717 (920)
Q Consensus 711 --------~--------------------------~~~l---------------------------------------~~ 717 (920)
. ...+ ..
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 0 0000 00
Q ss_pred HhccCCCCCEEEEeeCCCCccccc-c-----------------------cCCCCcccccEEEEeccC--CC-CCccccCC
Q 047503 718 SIADMENLESLTVESTSREETFDI-Q-----------------------SLGSPPQYLEHLYLVGSM--KN-LPDWIFKL 770 (920)
Q Consensus 718 ~l~~~~~L~~L~L~~~~~~~~~~l-~-----------------------~l~~~~~~L~~L~L~~~~--~~-lp~~~~~l 770 (920)
....+++|+.|+++.|........ . .+...+ +|+.+.+.++. .. -+..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCT-TCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccc-cccchhhhhccccccccccccccc
Confidence 001233455555554433211000 0 011122 44455544321 11 12335567
Q ss_pred CCcceEEEEeeccCCCcccccCCCcccceeEEecccCCC-eeeEccCCccccceeeeccCCCCcee-eEcCCCCccccEE
Q 047503 771 KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYE-KLHFKDGWFPRLQRLVLLDLKGVTLM-MIDKGAMPCLREL 848 (920)
Q Consensus 771 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L 848 (920)
++|+.++++.|.+.......+..+++|+.|+|++|.... ..+.....+++|++|++++|. ++.+ +..++.+++|+.|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEE
Confidence 888888888888777777778889999999998775433 344456778999999999985 4544 4557789999999
Q ss_pred EEecCCCCCcc-CcccCCCCCCCEEEEecCh
Q 047503 849 KIGPCPLLKEI-PAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 849 ~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~ 878 (920)
+|++|. +..+ |..+..+++|+.|+++++.
T Consensus 524 ~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 524 NMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp ECTTSC-CCBCCCGGGTTCTTCCEEECTTSC
T ss_pred ECCCCc-CCCCChhHHhCCCCCCEEECCCCc
Confidence 999997 5555 4568999999999999874
No 55
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.78 E-value=1.3e-19 Score=160.48 Aligned_cols=111 Identities=26% Similarity=0.454 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhccChHHHHHHHHHHHHhhhhhHHHH
Q 047503 4 AAVNLVIETLGSLLVQEINLLGSTKQEVQSIKNELESIRSFLKDADAREAAEEEEGESNEGVKTWVKQVREEAFRIEDVI 83 (920)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~l~~~L~~i~~~l~~a~~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~l 83 (920)
|+++++++||++++.+|+.++.||++++++|+++|++|++||.||+.+..+..+ ++++.|+++||++|||+||||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d-----~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLD-----SQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999876212234 899999999999999999999
Q ss_pred HHHHHHHhhhhcC---CCccccchhhhhhhhhhhhhhhH
Q 047503 84 DEYILKEAKLARG---SGLTYHLRKFFCFINVLKLHHGI 119 (920)
Q Consensus 84 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 119 (920)
|+|.++....... .|+.+.++++.+.+++++.||+|
T Consensus 76 D~f~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~rh~i 114 (115)
T 3qfl_A 76 DKFLVQVDGIKSDDNNNKFKGLMKRTTELLKKVKHKHGI 114 (115)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccCcccccchHHHHHHHHHHHHhhhHHhccC
Confidence 9999988643211 23334455555566666666654
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=6.1e-20 Score=217.58 Aligned_cols=345 Identities=15% Similarity=0.113 Sum_probs=196.8
Q ss_pred CCeeEEEEecCcccc--c-cccC-CCC-ceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCc-----CcccccCc
Q 047503 531 TKTRRISINQSLNNV--L-EWTE-DSK-IRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEF-----LPEEVGNL 600 (920)
Q Consensus 531 ~~~r~lsl~~~~~~~--~-~~~~-~~~-lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l 600 (920)
..+++|.+..+.... . .... ++. |++|.+.++.......+..+..++++|++|+|++|.+.. ++..+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 456666666553311 1 1111 233 777766655433333344445567777777777776542 22334556
Q ss_pred ccCceeeecCCCcc-----ccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcc-------------
Q 047503 601 FHLHYLSVRNTKVK-----VLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTH------------- 662 (920)
Q Consensus 601 ~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~------------- 662 (920)
++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+..+++|++|.++.+.....
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 67777777776664 344445567777777777777666776677777777777754211000
Q ss_pred --------cccccccCccCCcccCccccccccC--ch-hHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEe
Q 047503 663 --------ERGVKIQEGFGSLTDLQKLYIVQAN--ST-ILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVE 731 (920)
Q Consensus 663 --------~~~~~~p~~i~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~ 731 (920)
.....+|..+..+++|++|++..+. .. ....+..+++|+.|++. +......+......+++|++|++.
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 1122344445566777777777665 11 22335677777777777 333334455555667778888887
Q ss_pred e----------CCCCcccccccC-CCCcccccEEEEeccC-C-CCCccccC-CCCcceEEEEe----eccCCC-----cc
Q 047503 732 S----------TSREETFDIQSL-GSPPQYLEHLYLVGSM-K-NLPDWIFK-LKNLVRIGLYW----SELTND-----PM 788 (920)
Q Consensus 732 ~----------~~~~~~~~l~~l-~~~~~~L~~L~L~~~~-~-~lp~~~~~-l~~L~~L~L~~----~~l~~~-----~~ 788 (920)
+ |.......+..+ ..++ +|++|.+..+. . ..+..+.. +++|+.|+|++ +.+++. ..
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCc-cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 3 322221111121 2234 78888875431 1 12223333 77888888863 344432 11
Q ss_pred cccCCCcccceeEEeccc--CCCe-eeEccCCccccceeeeccCCCCce--eeEcCCCCccccEEEEecCCCCC-ccCcc
Q 047503 789 NVLQALPNLLELRLRDAY--DYEK-LHFKDGWFPRLQRLVLLDLKGVTL--MMIDKGAMPCLRELKIGPCPLLK-EIPAG 862 (920)
Q Consensus 789 ~~l~~lp~L~~L~L~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~-~lp~~ 862 (920)
..+.++++|+.|+|++|. +... +......+++|++|++.+|. ++. ++.....+++|++|+|++|+... .++..
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 224567888888886432 2211 11112347888888888765 332 22233568999999999998321 24555
Q ss_pred cCCCCCCCEEEEecCh
Q 047503 863 IEHLRNLEILKFCGML 878 (920)
Q Consensus 863 l~~l~~L~~L~l~~~~ 878 (920)
+..+++|++|++++|.
T Consensus 509 ~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHCSSCCEEEEESCB
T ss_pred HHhcCccCeeECcCCc
Confidence 6778899999999987
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=7.4e-19 Score=189.45 Aligned_cols=226 Identities=22% Similarity=0.202 Sum_probs=118.3
Q ss_pred CeeeEEEccCCCCCcCccc-ccCcccCceeeecCCCcccc---CccccCCCCCcEEeecCCcccccchhhcccccCCeEe
Q 047503 578 KLMKVLDFEDAPIEFLPEE-VGNLFHLHYLSVRNTKVKVL---PKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLL 653 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 653 (920)
++|++|++++|.+..+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3555666666665555543 45556666666666555533 3444555666666666665555555555566666666
Q ss_pred ecccCCCccccccccc--CccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEe
Q 047503 654 VYHSDNGTHERGVKIQ--EGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVE 731 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p--~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~ 731 (920)
+++|.. ..++ ..+..+++|++|++..+. ... ..+..+..+++|+.|+++
T Consensus 108 l~~n~l------~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~-~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 108 FQHSNL------KQMSEFSVFLSLRNLIYLDISHTH----------------------TRV-AFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CTTSEE------ESSTTTTTTTTCTTCCEEECTTSC----------------------CEE-CSTTTTTTCTTCCEEECT
T ss_pred CCCCcc------cccccchhhhhccCCCEEECCCCc----------------------CCc-cchhhcccCcCCCEEECC
Confidence 655411 1111 123333333333333222 000 011123334444444444
Q ss_pred eCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCee
Q 047503 732 STSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKL 811 (920)
Q Consensus 732 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~ 811 (920)
+|...+. .+|.++..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+....
T Consensus 159 ~n~l~~~-----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 159 GNSFQEN-----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TCEEGGG-----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCccccc-----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 4322110 13455566667777777777666555556666777777777766554433
Q ss_pred eEccCCccccceeeeccCCCCceeeEcCCCCc-cccEEEEecCCC
Q 047503 812 HFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMP-CLRELKIGPCPL 855 (920)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c~~ 855 (920)
+.....+++|+.|+++++......+.....+| +|+.|++++|+.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 33345567777777777654444444455564 777788777763
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=7.2e-20 Score=198.17 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=146.6
Q ss_pred hhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccc
Q 047503 569 FMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLK 647 (920)
Q Consensus 569 ~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~ 647 (920)
.+...+..+++|++|+|++|.+..++ ..++.+++|++|++++|.+..++. +..+++|++|++++|.++.+|. ++
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CT
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CC
Confidence 44566778889999999999999765 689999999999999999987775 8899999999999999887763 48
Q ss_pred cCCeEeecccCCCcccccccccCccCCcccCccccccccCch--hHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCC
Q 047503 648 KLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANST--ILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENL 725 (920)
Q Consensus 648 ~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L 725 (920)
+|++|++++|... .++. ..+++|++|++..+... ....+..+++|+.|+++.+.............+++|
T Consensus 100 ~L~~L~l~~n~l~------~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 100 SIETLHAANNNIS------RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp TCCEEECCSSCCS------EEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CcCEEECCCCccC------CcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 9999999987432 2222 23567777777776622 222455566666666653332221111112345666
Q ss_pred CEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecc
Q 047503 726 ESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDA 805 (920)
Q Consensus 726 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~ 805 (920)
+.|++++|..... ... ..+++|+.|+|++|.+...+ +.+..+++|+.|+|++|
T Consensus 172 ~~L~L~~N~l~~~---~~~-----------------------~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 172 EHLNLQYNFIYDV---KGQ-----------------------VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CEEECTTSCCCEE---ECC-----------------------CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTS
T ss_pred CEEECCCCcCccc---ccc-----------------------cccccCCEEECCCCcCCcch-hhhcccCcccEEECcCC
Confidence 6666666544322 111 12444555555555444322 22444555555555544
Q ss_pred cCCCeeeEccCCccccceeeeccCCCC-ceeeEcCCCCccccEEEEecCCCC
Q 047503 806 YDYEKLHFKDGWFPRLQRLVLLDLKGV-TLMMIDKGAMPCLRELKIGPCPLL 856 (920)
Q Consensus 806 ~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l 856 (920)
.+. .++.....+++|+.|++.+++.. ...+...+.+++|+.|++.+|+.+
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 433 23333334455555555554432 122223344555555555544433
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=7.2e-18 Score=191.26 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=217.3
Q ss_pred CeeEEEEecCccc-cccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecC
Q 047503 532 KTRRISINQSLNN-VLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRN 610 (920)
Q Consensus 532 ~~r~lsl~~~~~~-~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 610 (920)
+++++.+.++... ++. ..++++.|.+.++.... ++ ..+++|++|++++|.+..+|.. ..+|++|++++
T Consensus 72 ~l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~---lp---~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE--LPPHLESLVASCNSLTE---LP---ELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 140 (454)
T ss_dssp TCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSS---CC---CCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred CCCEEEecCCccccCCC--CcCCCCEEEccCCcCCc---cc---cccCCCcEEECCCCccCcccCC---CCCCCEEECcC
Confidence 3566666665442 222 24678888776553311 22 2347899999999999877643 26899999999
Q ss_pred CCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchh
Q 047503 611 TKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTI 690 (920)
Q Consensus 611 ~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 690 (920)
|.+..+| .++++++|++|++++|.++.+|..+ ++|++|++++|.. ..+| .++.+++|++|++..+....
T Consensus 141 n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l------~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 141 NQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL------EELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC------SSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcC------CcCc-cccCCCCCCEEECCCCcCCc
Confidence 9999999 6999999999999999999988654 5899999999743 2355 68999999999998887332
Q ss_pred HHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccC
Q 047503 691 LKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFK 769 (920)
Q Consensus 691 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~ 769 (920)
+.. ..++|+.|+++.+... .++ .+..+++|+.|++++|..... ...+.+|+.|+++++ ...+|.+
T Consensus 210 l~~--~~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~l------~~~~~~L~~L~l~~N~l~~l~~~--- 275 (454)
T 1jl5_A 210 LPD--LPLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLLKTL------PDLPPSLEALNVRDNYLTDLPEL--- 275 (454)
T ss_dssp CCC--CCTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSSC------CSCCTTCCEEECCSSCCSCCCCC---
T ss_pred CCC--CcCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcCCcc------cccccccCEEECCCCcccccCcc---
Confidence 222 2258999999854333 233 377899999999999876542 122349999999987 4566654
Q ss_pred CCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEE
Q 047503 770 LKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELK 849 (920)
Q Consensus 770 l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 849 (920)
+++|+.|++++|.+.+.. . -.++|+.|++++|.+.. ++ ...++|++|+++++. +..++. .+++|+.|+
T Consensus 276 ~~~L~~L~ls~N~l~~l~--~--~~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L~ 343 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLS--E--LPPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNK-LIELPA---LPPRLERLI 343 (454)
T ss_dssp CTTCCEEECCSSCCSEES--C--CCTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEE
T ss_pred cCcCCEEECcCCccCccc--C--cCCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCc-cccccc---cCCcCCEEE
Confidence 489999999999876521 1 12689999999887653 21 223699999999874 454443 379999999
Q ss_pred EecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 850 IGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 850 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+++|. ++.+|. .+++|++|++++++
T Consensus 344 L~~N~-l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 344 ASFNH-LAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCc-cccccc---hhhhccEEECCCCC
Confidence 99997 667887 47899999999976
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=189.23 Aligned_cols=248 Identities=17% Similarity=0.177 Sum_probs=184.2
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCcc-ccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 628 (920)
.+.+++|.+.++.. ....+..+.++++|++|++++|.+..+ |..++++.+|++|++++|.+..+|.. +.++++|++
T Consensus 51 ~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 45778887766543 234445688999999999999999866 46799999999999999999999887 889999999
Q ss_pred EeecCCcccccch--hhcccccCCeEeecccCCCcccccccc-cCccCCcccCccccccccC--chhHHhcccCCCCcEE
Q 047503 629 LDLKHSLVTQLPV--EIKNLKKLRYLLVYHSDNGTHERGVKI-QEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKL 703 (920)
Q Consensus 629 L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~-p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L 703 (920)
|++++|.++.+|. .+..+++|++|++++|+ ....+ +..++.+++|++|++..+. ...+..+..+++|+.|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCc-----cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 9999999999987 68899999999999873 22233 4568899999999998887 3346678889999999
Q ss_pred EEEecCCcchhHHH-HhccCCCCCEEEEeeCCCCccc--ccccCCCCcccccEEEEeccC------CCCCccccCCCCcc
Q 047503 704 GIQLTNDDGKNLCA-SIADMENLESLTVESTSREETF--DIQSLGSPPQYLEHLYLVGSM------KNLPDWIFKLKNLV 774 (920)
Q Consensus 704 ~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~L~~L~L~~~~------~~lp~~~~~l~~L~ 774 (920)
+++.+... .++. .+..+++|+.|++++|...... .+......+ .++.+.+.+.. ..+|.++..+++|+
T Consensus 204 ~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~-~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 204 ILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS-LIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEECSCST--THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC-CCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred cCCCCccc--cchhhhhhhcccccEEECCCCccccccccccccccccc-hhhccccccccccCcchhhhHHHHhcccCCC
Confidence 99855442 2333 3456899999999998765432 111111223 56677776541 13566777788888
Q ss_pred eEEEEeeccCCCcccccCCCcccceeEEecccCC
Q 047503 775 RIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY 808 (920)
Q Consensus 775 ~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~ 808 (920)
.|+|++|.++..+...++.+++|+.|+|++|...
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 8888888777544444677888888888777543
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=2.2e-18 Score=201.47 Aligned_cols=241 Identities=19% Similarity=0.131 Sum_probs=134.6
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccC
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSD 658 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 658 (920)
+|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ 132 (622)
T ss_dssp TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC
T ss_pred CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC
Confidence 44444444444444443 23444444444444444443 33444444444444444443 33444444444432
Q ss_pred CCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcc
Q 047503 659 NGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREET 738 (920)
Q Consensus 659 ~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 738 (920)
+ ..+|.. +++|++|++..|....+. ..+.+|+.|+++.+.... ++ ..+++|+.|++++|.....
T Consensus 133 l------~~lp~~---l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 133 L------TSLPVL---PPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp C------SCCCCC---CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCC
T ss_pred C------CcCCCC---CCCCCEEECcCCcCCCcC--CccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCCC
Confidence 1 112221 234444444443311111 122345555555332221 12 3457788888888765431
Q ss_pred cccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCC
Q 047503 739 FDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGW 817 (920)
Q Consensus 739 ~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 817 (920)
...+.+|+.|.++++ +..+|. .+++|+.|+|++|.++..+ ..+++|+.|+|++|.+. .++. .
T Consensus 197 ------~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~ 259 (622)
T 3g06_A 197 ------PTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---L 259 (622)
T ss_dssp ------CCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---C
T ss_pred ------CCccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---c
Confidence 122338888888876 445664 2478889999988877533 56688899999888665 3332 5
Q ss_pred ccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcc
Q 047503 818 FPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAG 862 (920)
Q Consensus 818 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~ 862 (920)
+++|+.|++++| .++.+|...+.+++|+.|+|++|+..+..|..
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 788999999887 45677766778899999999988865544443
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.5e-18 Score=186.99 Aligned_cols=225 Identities=19% Similarity=0.186 Sum_probs=149.8
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC---cccccCcccCceeeecCCCccccCccccCCCCCc
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL---PEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQ 627 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 627 (920)
.+++++|.+.++.. ..+....|.++++|++|++++|.+..+ |..+..+.+|++|++++|.+..+|..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 46888888776543 234556689999999999999998754 5677789999999999999999999999999999
Q ss_pred EEeecCCcccccch--hhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEE
Q 047503 628 TLDLKHSLVTQLPV--EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGI 705 (920)
Q Consensus 628 ~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l 705 (920)
+|++++|.++.++. .+..+++|++|++++|.. ....+..++.+++|++|++..+....
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 164 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-----RVAFNGIFNGLSSLEVLKMAGNSFQE--------------- 164 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-----EECSTTTTTTCTTCCEEECTTCEEGG---------------
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcC-----CccchhhcccCcCCCEEECCCCcccc---------------
Confidence 99999999998874 689999999999999732 22345556777777777776654110
Q ss_pred EecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCC-ccccCCCCcceEEEEeecc
Q 047503 706 QLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLP-DWIFKLKNLVRIGLYWSEL 783 (920)
Q Consensus 706 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp-~~~~~l~~L~~L~L~~~~l 783 (920)
...+..+..+++|+.|++++|...... ...+...+ +|++|+++++ ...++ ..+..+++|+.|+|++|.+
T Consensus 165 -------~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 165 -------NFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred -------ccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 011223445566666666666443221 12222233 4444444443 12222 2344555666666666655
Q ss_pred CCCcccccCCCc-ccceeEEeccc
Q 047503 784 TNDPMNVLQALP-NLLELRLRDAY 806 (920)
Q Consensus 784 ~~~~~~~l~~lp-~L~~L~L~~~~ 806 (920)
.+..+..+..+| +|+.|+|++|.
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCHHHHHhhhccCCEEEccCCC
Confidence 555555555553 56666655543
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.2e-17 Score=190.27 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=133.1
Q ss_pred CeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
++|++|+|++|.+..+ |..++++.+|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566677777766644 455666777777777776666554 4566667777777776666666554 566667777777
Q ss_pred cccCCCcccccccccC-ccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeC
Q 047503 655 YHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVEST 733 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 733 (920)
++|.+ ..+|. .+..+++|+.|++..+. .+..+ ....+..+++|+.|++++|
T Consensus 155 ~~N~l------~~~~~~~~~~l~~L~~L~l~~~~-----------~l~~i-----------~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 155 RNNPI------ESIPSYAFNRVPSLMRLDLGELK-----------KLEYI-----------SEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp CSCCC------CEECTTTTTTCTTCCEEECCCCT-----------TCCEE-----------CTTTTTTCTTCCEEECTTS
T ss_pred CCCCc------ceeCHhHHhcCCcccEEeCCCCC-----------Ccccc-----------ChhhccCCCCCCEEECCCC
Confidence 66522 12222 34444555544443221 11110 1123566778888888887
Q ss_pred CCCcccccccCCCCcccccEEEEecc-CCC-CCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCee
Q 047503 734 SREETFDIQSLGSPPQYLEHLYLVGS-MKN-LPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKL 811 (920)
Q Consensus 734 ~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~ 811 (920)
..... ..+..++ +|+.|+|+++ +.. .|.++..+++|+.|+|++|.+....+..+.++++|+.|+|++|.+....
T Consensus 207 ~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 207 NIKDM---PNLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CCSSC---CCCTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccc---ccccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 66542 3445555 7777777776 222 3556777777777777777776666666777777777777777555333
Q ss_pred eEccCCccccceeeeccCC
Q 047503 812 HFKDGWFPRLQRLVLLDLK 830 (920)
Q Consensus 812 ~~~~~~~~~L~~L~l~~~~ 830 (920)
+.....+++|+.|++.+++
T Consensus 283 ~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSSTTCTTCCEEECCSSC
T ss_pred hHHhccccCCCEEEccCCC
Confidence 2333456777777777654
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=190.96 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=126.4
Q ss_pred CeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccch-hhcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l 654 (920)
+++++|+|++|.+..++ ..+.++.+|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57888899988888654 67888888999999988888776 567888889999998888888876 4788888999988
Q ss_pred cccCCCccccccccc-CccCCcccCccccccccC---chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEE
Q 047503 655 YHSDNGTHERGVKIQ-EGFGSLTDLQKLYIVQAN---STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTV 730 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p-~~i~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L 730 (920)
++|.+ ..++ ..+..+++|++|++..+. ......+..+++|+.|+++.+.... ++ .+..+++|+.|+|
T Consensus 144 ~~N~i------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 144 RNNPI------ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDL 214 (440)
T ss_dssp CSCCC------CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEEC
T ss_pred CCCcc------cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEEC
Confidence 88632 2333 346777777777776543 1112234455555555554222211 11 2344455555555
Q ss_pred eeCCCCcccccccCCCCcccccEEEEecc-CCC-CCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecc
Q 047503 731 ESTSREETFDIQSLGSPPQYLEHLYLVGS-MKN-LPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDA 805 (920)
Q Consensus 731 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~ 805 (920)
++|...... ...+...+ +|+.|+|+++ ... .|..+..+++|+.|+|++|.++..+...+..+++|+.|+|++|
T Consensus 215 s~N~l~~~~-~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 215 SGNHLSAIR-PGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSCCCEEC-TTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCccCccC-hhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 555433211 12233333 4444444443 111 1233444444555555444444444444444444444444443
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.7e-20 Score=213.32 Aligned_cols=324 Identities=18% Similarity=0.142 Sum_probs=220.1
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCC-----cCcccccCcccCceeeecCCCcccc-Cccc-cCCC
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIE-----FLPEEVGNLFHLHYLSVRNTKVKVL-PKSI-GRLL 624 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i-~~L~ 624 (920)
+.+++|.+.++. ........++..+++|++|++++|.+. .++..+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 356666665443 233344556889999999999999987 4577788899999999999988742 2233 2355
Q ss_pred ----CCcEEeecCCccc-----ccchhhcccccCCeEeecccCCCcccccccccCc-cCCcccCccccccccCc------
Q 047503 625 ----NLQTLDLKHSLVT-----QLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQANS------ 688 (920)
Q Consensus 625 ----~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~------ 688 (920)
+|++|++++|.++ .+|..+..+++|++|++++|..... ....+... ....++|++|++..+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 7999999999887 4678899999999999999743211 01112222 22356899999988872
Q ss_pred hhHHhcccCCCCcEEEEEecCCcch---hHHHHhc-cCCCCCEEEEeeCCCCccc---ccccCCCCcccccEEEEeccC-
Q 047503 689 TILKELRKLRQLRKLGIQLTNDDGK---NLCASIA-DMENLESLTVESTSREETF---DIQSLGSPPQYLEHLYLVGSM- 760 (920)
Q Consensus 689 ~~~~~l~~l~~L~~L~l~~~~~~~~---~l~~~l~-~~~~L~~L~L~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~- 760 (920)
.....+..+++|+.|+++.+..... .+...+. ..++|++|++++|...... ....+...+ +|++|+++++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBC
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcC
Confidence 2355677889999999985543332 2222232 3569999999999765421 012233445 89999999873
Q ss_pred CC-----C-CccccCCCCcceEEEEeeccCCC----cccccCCCcccceeEEecccCCCeeeE-----ccCCccccceee
Q 047503 761 KN-----L-PDWIFKLKNLVRIGLYWSELTND----PMNVLQALPNLLELRLRDAYDYEKLHF-----KDGWFPRLQRLV 825 (920)
Q Consensus 761 ~~-----l-p~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~lp~L~~L~L~~~~~~~~~~~-----~~~~~~~L~~L~ 825 (920)
.. + +.....+++|++|+|++|.++.. ....+..+++|+.|+|++|.+.+.... .....++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 11 1 22334589999999999988764 345566799999999998866432111 112347999999
Q ss_pred eccCCCCce----eeEcCCCCccccEEEEecCCCCCccCc----ccCC-CCCCCEEEEecCh
Q 047503 826 LLDLKGVTL----MMIDKGAMPCLRELKIGPCPLLKEIPA----GIEH-LRNLEILKFCGML 878 (920)
Q Consensus 826 l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~~~ 878 (920)
+.+|..-.. ++.....+++|+.|++++|..-...+. .+.. .++|++|++++|.
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 999863322 222334679999999999964322222 2332 6799999999986
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=5.9e-19 Score=209.23 Aligned_cols=346 Identities=17% Similarity=0.173 Sum_probs=208.0
Q ss_pred CCeeEEEEecCccc--cc-cc-cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCc-----CcccccCcc
Q 047503 531 TKTRRISINQSLNN--VL-EW-TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEF-----LPEEVGNLF 601 (920)
Q Consensus 531 ~~~r~lsl~~~~~~--~~-~~-~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~ 601 (920)
.++++|.+..+... .. .. ..+++|++|.+.++.......++.++.++++|++|+|++|.+.. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 46788888876541 11 12 14789999998877544444466677789999999999998653 333344677
Q ss_pred cCceeeecCCC--cc--ccCccccCCCCCcEEeecCC-cccccchhhcccccCCeEeecccCCC----------------
Q 047503 602 HLHYLSVRNTK--VK--VLPKSIGRLLNLQTLDLKHS-LVTQLPVEIKNLKKLRYLLVYHSDNG---------------- 660 (920)
Q Consensus 602 ~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~---------------- 660 (920)
+|++|++++|. +. .++.-+.++++|++|++++| .++.+|..+.++++|++|.+..+...
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 99999999886 22 23333456899999999988 67778888888999999987654210
Q ss_pred ---------cccccccccCccCCcccCccccccccCc--h-hHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEE
Q 047503 661 ---------THERGVKIQEGFGSLTDLQKLYIVQANS--T-ILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESL 728 (920)
Q Consensus 661 ---------~~~~~~~~p~~i~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L 728 (920)
.......++..+..+++|++|++..+.. . ....+..+++|+.|.+..+ .....+......+++|++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 0000112233333566777777766651 1 2223456777787777732 2233344444457778888
Q ss_pred EEeeCC--------CCcccccccCCC-CcccccEEEEeccC-C-CCCccc-cCCCCcceEEEE--e----eccCCCcc--
Q 047503 729 TVESTS--------REETFDIQSLGS-PPQYLEHLYLVGSM-K-NLPDWI-FKLKNLVRIGLY--W----SELTNDPM-- 788 (920)
Q Consensus 729 ~L~~~~--------~~~~~~l~~l~~-~~~~L~~L~L~~~~-~-~lp~~~-~~l~~L~~L~L~--~----~~l~~~~~-- 788 (920)
++..+. ......+..+.. ++ +|++|.+..+. . ..+..+ ..+++|+.|+|+ + +.++..+.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 774421 111111111221 34 77787665432 1 111122 247888888888 2 33442211
Q ss_pred ---cccCCCcccceeEEecccCCCe-eeEccCCccccceeeeccCCCCceeeEcC-CCCccccEEEEecCCCCCc-cCcc
Q 047503 789 ---NVLQALPNLLELRLRDAYDYEK-LHFKDGWFPRLQRLVLLDLKGVTLMMIDK-GAMPCLRELKIGPCPLLKE-IPAG 862 (920)
Q Consensus 789 ---~~l~~lp~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~-lp~~ 862 (920)
..+..+++|+.|+|++ .+.+. +......+++|+.|++.+|.......... ..+|+|+.|+|++|+.... ++..
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 1245678888888865 22221 11111237889999998875322211111 4589999999999996322 2334
Q ss_pred cCCCCCCCEEEEecChH
Q 047503 863 IEHLRNLEILKFCGMLT 879 (920)
Q Consensus 863 l~~l~~L~~L~l~~~~~ 879 (920)
+..+++|++|++++|+.
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 56789999999999973
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=2.4e-18 Score=183.26 Aligned_cols=198 Identities=20% Similarity=0.219 Sum_probs=97.8
Q ss_pred CeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCcccc-CccccCCCCCcEEeecCCc-cccc-chhhcccccCCeEe
Q 047503 578 KLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSL-VTQL-PVEIKNLKKLRYLL 653 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~ 653 (920)
++|++|++++|.+..+| ..++.+++|++|++++|.+..+ |..+.++++|++|++++|. ++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45666666666655444 3455566666666666655544 4455566666666666664 5555 34455566666666
Q ss_pred ecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeC
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVEST 733 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 733 (920)
+++|... ...|..++.+++|++|++..+. ... ..+..+..+++|+.|++++|
T Consensus 112 l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~----------------------l~~-~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 112 LDRCGLQ-----ELGPGLFRGLAALQYLYLQDNA----------------------LQA-LPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTSCCC-----CCCTTTTTTCTTCCEEECCSSC----------------------CCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCC-----EECHhHhhCCcCCCEEECCCCc----------------------ccc-cCHhHhccCCCccEEECCCC
Confidence 6554211 1112233444444444433332 110 00112445556666666655
Q ss_pred CCCcccccccCCCCcccccEEEEecc-CC-CCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecc
Q 047503 734 SREETFDIQSLGSPPQYLEHLYLVGS-MK-NLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDA 805 (920)
Q Consensus 734 ~~~~~~~l~~l~~~~~~L~~L~L~~~-~~-~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~ 805 (920)
..... +...+...+ +|+.|+++++ .. ..|.++..+++|+.|+|++|.+.......+..+++|+.|+|++|
T Consensus 164 ~l~~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 164 RISSV-PERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCCEE-CTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccccc-CHHHhcCcc-ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 43321 111233333 4555555543 11 12445555566666666666555544444555566666665554
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=2.9e-17 Score=187.21 Aligned_cols=221 Identities=20% Similarity=0.239 Sum_probs=153.5
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCcc-ccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 628 (920)
.++++.|.+.++.. ....+..|.++++|++|+|++|.+..++ ..+.++.+|++|+|++|.+..+|.. +..+++|++
T Consensus 74 ~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 36778887766543 2344567899999999999999998664 7799999999999999999988876 788999999
Q ss_pred EeecCCcccccch-hhcccccCCeEeecccCCCcccccccccC-ccCCcccCccccccccCchhHHhcccCCCCcEEEEE
Q 047503 629 LDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQ 706 (920)
Q Consensus 629 L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~ 706 (920)
|+|++|.++.+|. .+.++++|++|++++|+ ....++. .+..+++|++|++..+....+..+..+++|+.|+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~-- 224 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE-- 224 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCT-----TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEE--
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCC-----CccccChhhccCCCCCCEEECCCCcccccccccccccccEEE--
Confidence 9999999998876 58899999999999863 2333443 4777888888888776533333344444455544
Q ss_pred ecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccC-C-CCCccccCCCCcceEEEEeeccC
Q 047503 707 LTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSM-K-NLPDWIFKLKNLVRIGLYWSELT 784 (920)
Q Consensus 707 ~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~ 784 (920)
|++|...+.. ...+...+ +|+.|+|+++. . ..|..+..+++|+.|+|++|.++
T Consensus 225 -----------------------Ls~N~l~~~~-~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 225 -----------------------MSGNHFPEIR-PGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp -----------------------CTTSCCSEEC-GGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------CcCCcCcccC-cccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 4444333221 12233333 45555554431 1 12445666777777777777776
Q ss_pred CCcccccCCCcccceeEEecc
Q 047503 785 NDPMNVLQALPNLLELRLRDA 805 (920)
Q Consensus 785 ~~~~~~l~~lp~L~~L~L~~~ 805 (920)
..+...+..+++|+.|+|++|
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSS
T ss_pred ccChHHhccccCCCEEEccCC
Confidence 666666677777777777765
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=187.09 Aligned_cols=238 Identities=17% Similarity=0.210 Sum_probs=155.0
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccc-hhhcccccCCeEeecc
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLP-VEIKNLKKLRYLLVYH 656 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 656 (920)
..+.++.++..+..+|..+. .++++|+|++|.+..++ ..+.++++|++|+|++|.+..++ ..+..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45678899999999998764 68999999999999876 67899999999999999999876 5689999999999999
Q ss_pred cCCCcccccccccC-ccCCcccCccccccccCch--hHHhcccCCCCcEEEEEe-cCCcchhHHHHhccCCCCCEEEEee
Q 047503 657 SDNGTHERGVKIQE-GFGSLTDLQKLYIVQANST--ILKELRKLRQLRKLGIQL-TNDDGKNLCASIADMENLESLTVES 732 (920)
Q Consensus 657 ~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~L~~ 732 (920)
|.+ ..+|. .+..+++|++|++..+... ....+..+++|+.|+++. +.... .....+..+++|+.|++++
T Consensus 122 n~l------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 122 NRL------TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SCC------SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTT
T ss_pred CcC------CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCC
Confidence 743 23444 4788899999988877622 223456667777777662 21111 1112355566666666666
Q ss_pred CCCCcccccccCCCCcccccEEEEecc-CCC-CCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCe
Q 047503 733 TSREETFDIQSLGSPPQYLEHLYLVGS-MKN-LPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEK 810 (920)
Q Consensus 733 ~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~ 810 (920)
|.... +..+..++ +|+.|+|+++ +.. .|..+..+++|+.|+|++|.+....+..+.++++|+.|+|++|.+...
T Consensus 195 n~l~~---~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 195 CNLRE---IPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp SCCSS---CCCCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CcCcc---ccccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 65442 22344444 5666666654 222 244555566666666666665555555555666666666665544432
Q ss_pred eeEccCCccccceeeeccC
Q 047503 811 LHFKDGWFPRLQRLVLLDL 829 (920)
Q Consensus 811 ~~~~~~~~~~L~~L~l~~~ 829 (920)
.+.....+++|+.|++.++
T Consensus 271 ~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTTTSSCTTCCEEECCSS
T ss_pred ChhHhccccCCCEEEcCCC
Confidence 2222344555566655554
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.1e-17 Score=198.26 Aligned_cols=340 Identities=14% Similarity=0.055 Sum_probs=228.8
Q ss_pred CCeeEEEEecCccc------cc-cccCCCCceEEEeeccCCC--CcchhhhhhccCCeeeEEEccCCCCCcCcccccCcc
Q 047503 531 TKTRRISINQSLNN------VL-EWTEDSKIRSVFFLNVDKL--PGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLF 601 (920)
Q Consensus 531 ~~~r~lsl~~~~~~------~~-~~~~~~~lrsL~~~~~~~~--~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~ 601 (920)
.++++|.+..+... +. -...++.|++|.+..+... ....++..+.++++|++|++++|.+..+|..++.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 45667776655421 11 1234677777766544331 223455566778888888888888777777788888
Q ss_pred cCceeeecCCCc----cccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCccc
Q 047503 602 HLHYLSVRNTKV----KVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTD 677 (920)
Q Consensus 602 ~L~~L~L~~~~i----~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~ 677 (920)
+|++|+++.... ...+..+..+++|++|+++++....+|..+..+++|++|++++|... ...++..++.+++
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~----~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE----TEDHCTLIQKCPN 319 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC----HHHHHHHHTTCTT
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCC----HHHHHHHHHhCcC
Confidence 888888875321 24455677888888888888767788888899999999999997421 1122334678899
Q ss_pred CccccccccC-c-hhHHhcccCCCCcEEEEE-----------ecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccC
Q 047503 678 LQKLYIVQAN-S-TILKELRKLRQLRKLGIQ-----------LTNDDGKNLCASIADMENLESLTVESTSREETFDIQSL 744 (920)
Q Consensus 678 L~~L~~~~~~-~-~~~~~l~~l~~L~~L~l~-----------~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l 744 (920)
|++|++..+- . ........+++|+.|+++ ++......+......+++|++|++.++...... +..+
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-~~~l 398 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LESI 398 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH-HHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH-HHHH
Confidence 9999987433 2 223334678999999999 344555556666677999999999877664432 2333
Q ss_pred CC-CcccccEEEEecc-----CCCC------CccccCCCCcceEEEEeec--cCCCcccccC-CCcccceeEEecccCCC
Q 047503 745 GS-PPQYLEHLYLVGS-----MKNL------PDWIFKLKNLVRIGLYWSE--LTNDPMNVLQ-ALPNLLELRLRDAYDYE 809 (920)
Q Consensus 745 ~~-~~~~L~~L~L~~~-----~~~l------p~~~~~l~~L~~L~L~~~~--l~~~~~~~l~-~lp~L~~L~L~~~~~~~ 809 (920)
.. ++ +|++|+++++ .... +..+..+++|+.|+|++|. +++..+..++ .+|+|+.|+|++|.+.+
T Consensus 399 ~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 399 GTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 33 45 8999999742 2222 2235679999999999764 5554454444 48999999999887654
Q ss_pred -eeeEccCCccccceeeeccCCCCce--eeEcCCCCccccEEEEecCCCCCc-cCcccCCCCCCCEEEEecC
Q 047503 810 -KLHFKDGWFPRLQRLVLLDLKGVTL--MMIDKGAMPCLRELKIGPCPLLKE-IPAGIEHLRNLEILKFCGM 877 (920)
Q Consensus 810 -~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~ 877 (920)
.++....++++|++|++++|. ++. ++.....+|+|+.|+|++|+.... +......++.|....+...
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 233334678999999999997 443 222234689999999999994322 2222345677766655554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=9.6e-18 Score=180.97 Aligned_cols=219 Identities=19% Similarity=0.237 Sum_probs=150.6
Q ss_pred eeEEEccCCCCC--cCccccc-------CcccCceeeecCCCcc-ccCccc--cCCCCCcEEeecCCcccccchhhccc-
Q 047503 580 MKVLDFEDAPIE--FLPEEVG-------NLFHLHYLSVRNTKVK-VLPKSI--GRLLNLQTLDLKHSLVTQLPVEIKNL- 646 (920)
Q Consensus 580 Lr~L~L~~~~~~--~lp~~i~-------~l~~L~~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~l~~lp~~i~~l- 646 (920)
|++|+|++|.+. .+|..+. ++.+|++|++++|.+. .+|..+ ..+++|++|++++|.++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 778888888775 4666655 6888888888888887 677776 78888888888888888778777776
Q ss_pred ----ccCCeEeecccCCCcccccccccCccCCcccCccccccccC-ch---hHHhc--ccCCCCcEEEEEecCCcc-hhH
Q 047503 647 ----KKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-ST---ILKEL--RKLRQLRKLGIQLTNDDG-KNL 715 (920)
Q Consensus 647 ----~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~---~~~~l--~~l~~L~~L~l~~~~~~~-~~l 715 (920)
++|++|++++|.. ....|..++.+++|++|++..+. .. .+..+ ..+++|+.|+++.+.... ..+
T Consensus 145 ~~~~~~L~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHS-----LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp TTCCTTCCEEEEESCSC-----CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred HhhcCCCcEEEeeCCCC-----ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH
Confidence 8888888888632 22334567888888888888776 11 23444 778888888887544432 123
Q ss_pred H-HHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCC
Q 047503 716 C-ASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQA 793 (920)
Q Consensus 716 ~-~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 793 (920)
+ ..+..+++|+.|++++|...+..+......++ +|+.|+++++ +..+|.++. ++|+.|+|++|.+++. +.+..
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~--p~~~~ 294 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN--PSPDE 294 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC--CCTTT
T ss_pred HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC--hhHhh
Confidence 3 33456788999999888765543223333344 7777777765 456666554 6777777777776654 22666
Q ss_pred CcccceeEEecccCC
Q 047503 794 LPNLLELRLRDAYDY 808 (920)
Q Consensus 794 lp~L~~L~L~~~~~~ 808 (920)
+++|+.|+|++|.+.
T Consensus 295 l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCEEEEEECTTCTTT
T ss_pred CCCCCEEeccCCCCC
Confidence 777777777666543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=7.8e-18 Score=192.94 Aligned_cols=234 Identities=17% Similarity=0.120 Sum_probs=153.2
Q ss_pred ccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEe
Q 047503 575 AEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLL 653 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 653 (920)
..+++|++|+|++|.+..++ ..++.+++|++|+|++|.+..+++ ++.+++|++|+|++|.++.+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 34558999999999998764 689999999999999999987765 8999999999999999988774 38999999
Q ss_pred ecccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEEEecCCcchhHHHHh-ccCCCCCEEEE
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDGKNLCASI-ADMENLESLTV 730 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l-~~~~~L~~L~L 730 (920)
+++|.+. .++. ..+++|++|++..+. ...+..++.+++|+.|+++.+..... .+..+ ..+++|+.|+|
T Consensus 106 L~~N~l~------~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 106 AANNNIS------RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNL 176 (487)
T ss_dssp CCSSCCC------CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEEC
T ss_pred CcCCcCC------CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEec
Confidence 9997432 2222 235778888887776 22334566777777777774443332 22233 35677777777
Q ss_pred eeCCCCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCC-
Q 047503 731 ESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDY- 808 (920)
Q Consensus 731 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~- 808 (920)
++|.+.+. .....++ +|+.|+|+++ +..+|..+..+++|+.|+|++|.+.+ .+..++.+++|+.|+|++|.+.
T Consensus 177 s~N~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 177 QYNFIYDV---KGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp TTSCCCEE---ECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred CCCccccc---cccccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 77765443 1222333 6666666665 34455556666666666666666553 3334556666666666655443
Q ss_pred CeeeEccCCccccceeeec
Q 047503 809 EKLHFKDGWFPRLQRLVLL 827 (920)
Q Consensus 809 ~~~~~~~~~~~~L~~L~l~ 827 (920)
..++.....+++|+.|.+.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 2222223445555555543
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.4e-18 Score=188.07 Aligned_cols=258 Identities=9% Similarity=0.034 Sum_probs=187.9
Q ss_pred CeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccchhhcccccCCeEeec
Q 047503 578 KLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 655 (920)
..++.++++.+.+...+ ..+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45777788887776444 33456779999999999999876 578999999999999999987765 8999999999999
Q ss_pred ccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCC
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSR 735 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 735 (920)
+|.. ..++ ..++|++|++..+... .+. ...+++|+.|++++|..
T Consensus 89 ~n~l------~~l~----~~~~L~~L~l~~n~l~------------~~~--------------~~~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 89 NNYV------QELL----VGPSIETLHAANNNIS------------RVS--------------CSRGQGKKNIYLANNKI 132 (317)
T ss_dssp SSEE------EEEE----ECTTCCEEECCSSCCS------------EEE--------------ECCCSSCEEEECCSSCC
T ss_pred CCcc------cccc----CCCCcCEEECCCCccC------------CcC--------------ccccCCCCEEECCCCCC
Confidence 8632 2222 3366777766554311 100 11245677777776655
Q ss_pred CcccccccCCCCcccccEEEEeccC-CCC-Cccc-cCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee
Q 047503 736 EETFDIQSLGSPPQYLEHLYLVGSM-KNL-PDWI-FKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH 812 (920)
Q Consensus 736 ~~~~~l~~l~~~~~~L~~L~L~~~~-~~l-p~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~ 812 (920)
.... ...+...+ +|+.|+++++. ..+ |..+ ..+++|+.|+|++|.++.. +....+++|+.|+|++|.+.. ++
T Consensus 133 ~~~~-~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 133 TMLR-DLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp CSGG-GBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-EC
T ss_pred CCcc-chhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-ch
Confidence 4322 12333344 77777777652 222 3344 4689999999999988654 445569999999999987763 44
Q ss_pred EccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCC-CccCcccCCCCCCCEEEEecCh
Q 047503 813 FKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLL-KEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 813 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
.....+++|+.|+++++ .++.++.....+++|+.|++++|+.. ..+|..+..+++|+.|++.+++
T Consensus 208 ~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 44677899999999997 56677777788999999999999976 5778888899999999888776
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1e-16 Score=183.75 Aligned_cols=214 Identities=14% Similarity=0.113 Sum_probs=116.0
Q ss_pred cccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccC
Q 047503 600 LFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDL 678 (920)
Q Consensus 600 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L 678 (920)
+++|++|+|++|.+..+| ..++++++|++|+|++|.++..+. +..+++|++|++++|. ...+| ..++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~------l~~l~----~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY------VQELL----VGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE------EEEEE----ECTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc------CCCCC----CCCCc
Confidence 448999999998888775 578889999999999888886665 8888889999888862 11222 11344
Q ss_pred ccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEec
Q 047503 679 QKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVG 758 (920)
Q Consensus 679 ~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 758 (920)
++|++..+. .... ....+++|+.|++++|...+..
T Consensus 102 ~~L~L~~N~----------------------l~~~----~~~~l~~L~~L~L~~N~l~~~~------------------- 136 (487)
T 3oja_A 102 ETLHAANNN----------------------ISRV----SCSRGQGKKNIYLANNKITMLR------------------- 136 (487)
T ss_dssp CEEECCSSC----------------------CCCE----EECCCSSCEEEECCSSCCCSGG-------------------
T ss_pred CEEECcCCc----------------------CCCC----CccccCCCCEEECCCCCCCCCC-------------------
Confidence 444433322 1100 0012345666666665443321
Q ss_pred cCCCCCccccCCCCcceEEEEeeccCCCcccccC-CCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeE
Q 047503 759 SMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQ-ALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMI 837 (920)
Q Consensus 759 ~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 837 (920)
|..+..+++|+.|+|++|.+.+..+..+. .+++|+.|+|++|.+... + ....+++|+.|++++|. ++.++.
T Consensus 137 -----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~-l~~~~~ 208 (487)
T 3oja_A 137 -----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNK-LAFMGP 208 (487)
T ss_dssp -----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSC-CCEECG
T ss_pred -----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCC-CCCCCH
Confidence 22344445555555555555443333333 455555555555544322 1 11235555555555542 333433
Q ss_pred cCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 838 DKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 838 ~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
..+.+++|+.|++++|. +..+|..+..+++|+.|++++++
T Consensus 209 ~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred hHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 34455555555555554 33455555555555555555543
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=1.1e-17 Score=182.80 Aligned_cols=251 Identities=18% Similarity=0.200 Sum_probs=130.3
Q ss_pred eeEEEccCCCCCcCcccccCc--ccCceeeecCCCccccCccccCCCCCcEEeecCCcccc--cchhhcccccCCeEeec
Q 047503 580 MKVLDFEDAPIEFLPEEVGNL--FHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQ--LPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 580 Lr~L~L~~~~~~~lp~~i~~l--~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~ 655 (920)
++.|+++++.+. |..++.+ .++++|+++++.+...+..+.++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455555555443 3334444 45555555555555444445555555555555555442 44455555555555555
Q ss_pred ccCCCcccccccccCccCCcccCccccccccC---c-hhHHhcccCCCCcEEEEEec-CCcchhHHHHhccCC-CCCEEE
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN---S-TILKELRKLRQLRKLGIQLT-NDDGKNLCASIADME-NLESLT 729 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~---~-~~~~~l~~l~~L~~L~l~~~-~~~~~~l~~~l~~~~-~L~~L~ 729 (920)
+|. .....|..++.+++|++|++..+. . .....+..+++|+.|+++.+ ......++..+..++ +|++|+
T Consensus 127 ~~~-----l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 127 GLR-----LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp TCB-----CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred Ccc-----cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 542 111233334444555555554442 1 12333555666666666643 444444555666666 777777
Q ss_pred EeeCC--CCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeec-cCCCcccccCCCcccceeEEeccc
Q 047503 730 VESTS--REETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSE-LTNDPMNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 730 L~~~~--~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~lp~L~~L~L~~~~ 806 (920)
+++|. ... ..+|..+..+++|+.|+|++|. +++..+..+..+++|+.|+|++|.
T Consensus 202 l~~~~~~~~~-----------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 202 LSGYRKNLQK-----------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CCSCGGGSCH-----------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCcccCCH-----------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 76652 110 1123345556777777777776 555556666777777777777663
Q ss_pred -CCCeeeEccCCccccceeeeccCCCCceeeEcCCCC-ccccEEEEecCCCCCccCcccC
Q 047503 807 -DYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAM-PCLRELKIGPCPLLKEIPAGIE 864 (920)
Q Consensus 807 -~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~l~ 864 (920)
...........+++|+.|++.+| +.... ...+ .+|..|++++|...+..|..+.
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI--VPDGT--LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS--SCTTC--HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc--cCHHH--HHHHHhhCcceEEecccCccccCCccc
Confidence 21111112345777777777776 22111 0112 2356666776665445555444
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=9.9e-18 Score=180.89 Aligned_cols=247 Identities=17% Similarity=0.136 Sum_probs=164.0
Q ss_pred hhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCcc--ccCcccc-------CCCCCcEEeecCCccc-ccchh
Q 047503 573 LVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVK--VLPKSIG-------RLLNLQTLDLKHSLVT-QLPVE 642 (920)
Q Consensus 573 ~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~l~-~lp~~ 642 (920)
++...+.|+.|++++|.+ .+|..+... |++|+++++.+. .+|..+. ++++|++|++++|.++ .+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 356677899999999999 888776655 889999998875 4666665 7899999999999887 67876
Q ss_pred h--cccccCCeEeecccCCCcccccccccCccCCc-----ccCccccccccC--chhHHhcccCCCCcEEEEEecCCcc-
Q 047503 643 I--KNLKKLRYLLVYHSDNGTHERGVKIQEGFGSL-----TDLQKLYIVQAN--STILKELRKLRQLRKLGIQLTNDDG- 712 (920)
Q Consensus 643 i--~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l-----~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~- 712 (920)
+ ..+++|++|++++|... ..|..++.+ ++|++|++..+. ...+..++.+++|+.|+++.+....
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWA------TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCS------SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred HHHhcCCCccEEEccCCCCc------chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 6 88999999999987432 224444444 666666666655 2222345555555555555332221
Q ss_pred hhHHHHh--ccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCC-ccccCCCCcceEEEEeeccCCCc-c
Q 047503 713 KNLCASI--ADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLP-DWIFKLKNLVRIGLYWSELTNDP-M 788 (920)
Q Consensus 713 ~~l~~~l--~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~~~-~ 788 (920)
..++..+ ..+++|++|++++|...... .++ ..+..+++|+.|+|++|.+.+.. .
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPS----------------------GVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHH----------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchH----------------------HHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 1122223 44555555555554332100 111 12346788888888888887755 3
Q ss_pred cccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCC
Q 047503 789 NVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPL 855 (920)
Q Consensus 789 ~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 855 (920)
+.+..+++|+.|+|++|.+. .++.. .+++|++|+++++. ++.++. ...+++|+.|++++|+.
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~--~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKG--LPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSS--CCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhh--ccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCC
Confidence 55667888999999888765 44332 23789999998874 555554 77889999999998874
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=8.3e-16 Score=163.59 Aligned_cols=220 Identities=17% Similarity=0.146 Sum_probs=148.7
Q ss_pred eEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCccccc-chhhcccccCCeEeecccC
Q 047503 581 KVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQL-PVEIKNLKKLRYLLVYHSD 658 (920)
Q Consensus 581 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 658 (920)
++++.+++.+..+|..+ ..+|++|++++|.+..+|. .+.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67788888888777544 4678888888888887764 577788888888888877766 5567778888888887751
Q ss_pred CCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcc
Q 047503 659 NGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREET 738 (920)
Q Consensus 659 ~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~ 738 (920)
. ...++ +..+..+++|++|++++|.....
T Consensus 92 ~-----l~~~~----------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 92 Q-----LRSVD----------------------------------------------PATFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp T-----CCCCC----------------------------------------------TTTTTTCTTCCEEECTTSCCCCC
T ss_pred C-----ccccC----------------------------------------------HHHhcCCcCCCEEECCCCcCCEE
Confidence 0 00110 11234456777777777654321
Q ss_pred cccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCc
Q 047503 739 FDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWF 818 (920)
Q Consensus 739 ~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~ 818 (920)
.|..+..+++|+.|+|++|.+.......++.+++|+.|+|++|.+....+.....+
T Consensus 121 ------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 121 ------------------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp ------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ------------------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 13345667777777777777766665667777788888887776553322234567
Q ss_pred cccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccC-cccCCCCCCCEEEEecCh
Q 047503 819 PRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIP-AGIEHLRNLEILKFCGML 878 (920)
Q Consensus 819 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 878 (920)
++|+.|++.++......+...+.+++|+.|++++|. +..+| ..+..+++|++|+++++|
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 788888888765433335556678889999998887 44455 457888899999998865
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=6.9e-16 Score=165.85 Aligned_cols=191 Identities=18% Similarity=0.257 Sum_probs=118.0
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEee
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLV 654 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 654 (920)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|.++.+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 45677888888888877776 57778888888888888887777 778888888888888877776 5778888888888
Q ss_pred cccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCC
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTS 734 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 734 (920)
++|... .++ .++.+++|++|++..+.......+..+++|+ .|++++|.
T Consensus 115 ~~n~l~------~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~-------------------------~L~l~~n~ 162 (308)
T 1h6u_A 115 TSTQIT------DVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQ-------------------------YLSIGNAQ 162 (308)
T ss_dssp TTSCCC------CCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCC-------------------------EEECCSSC
T ss_pred CCCCCC------Cch-hhcCCCCCCEEECCCCccCcCccccCCCCcc-------------------------EEEccCCc
Confidence 876321 222 2556666666666555422222234444444 44444443
Q ss_pred CCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccC
Q 047503 735 REETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYD 807 (920)
Q Consensus 735 ~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 807 (920)
.... ..+..++ +|+.|+++++ ...++. +..+++|+.|+|++|.+.+.. .+..+++|+.|+|++|.+
T Consensus 163 l~~~---~~l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 163 VSDL---TPLANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCC---GGGTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred CCCC---hhhcCCC-CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 3221 1122333 4555555444 223332 556667777777777665443 366677777777776644
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.7e-17 Score=196.55 Aligned_cols=319 Identities=15% Similarity=0.130 Sum_probs=192.9
Q ss_pred CCCCceEEEeeccC-CCCcchhhhhhccCCeeeEEEccCC-CCCcCcccccCcccCceeeecCC-------CccccCccc
Q 047503 550 EDSKIRSVFFLNVD-KLPGSFMTKLVAEFKLMKVLDFEDA-PIEFLPEEVGNLFHLHYLSVRNT-------KVKVLPKSI 620 (920)
Q Consensus 550 ~~~~lrsL~~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~lp~~i~~l~~L~~L~L~~~-------~i~~lp~~i 620 (920)
.+++|++|.+..+. ......+..++.++++|++|++++| .+..+|..+..+++|++|+++.+ .+..++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 34455555554433 1122233333444566666666655 23344455555566666654332 233444555
Q ss_pred cCCCCCcEE-eecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC-chhHHh-cccC
Q 047503 621 GRLLNLQTL-DLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKE-LRKL 697 (920)
Q Consensus 621 ~~L~~L~~L-~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~-l~~l 697 (920)
.++++|+.| .+.+.....+|..+..+++|++|++++|.... ..++..+..+++|++|++..+- ...+.. ...+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~----~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS----YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH----HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH----HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence 666666666 44443444566666688999999999874211 1233335678999999998763 122222 3458
Q ss_pred CCCcEEEEE---------ecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCC-CCcccccEEEEe--c-----cC
Q 047503 698 RQLRKLGIQ---------LTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLG-SPPQYLEHLYLV--G-----SM 760 (920)
Q Consensus 698 ~~L~~L~l~---------~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~-~~~~~L~~L~L~--~-----~~ 760 (920)
++|+.|++. .+......+......+++|++|.+.++...... +..+. .++ +|++|+++ + ..
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~-~~~l~~~~~-~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA-LITIARNRP-NMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH-HHHHHHHCT-TCCEEEEEESSTTCCCTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH-HHHHHhhCC-CcceeEeecccCCCcccc
Confidence 999999994 233344445444556899999988777654322 22332 245 99999999 3 22
Q ss_pred CCCC------ccccCCCCcceEEEEeeccCCCcccccCC-CcccceeEEecccCCCeee-EccCCccccceeeeccCCCC
Q 047503 761 KNLP------DWIFKLKNLVRIGLYWSELTNDPMNVLQA-LPNLLELRLRDAYDYEKLH-FKDGWFPRLQRLVLLDLKGV 832 (920)
Q Consensus 761 ~~lp------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~-lp~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l 832 (920)
...| ..+..+++|+.|+|++ .+++..+..++. +++|+.|+|++|.+.+... ....++++|+.|++.+|..
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~- 493 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF- 493 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-
T ss_pred cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-
Confidence 3222 2256789999999977 566655666665 8999999999887643322 1124589999999999976
Q ss_pred ceeeE--cCCCCccccEEEEecCCCCCccCccc-CCCCCCCEEEEec
Q 047503 833 TLMMI--DKGAMPCLRELKIGPCPLLKEIPAGI-EHLRNLEILKFCG 876 (920)
Q Consensus 833 ~~~~~--~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~ 876 (920)
+.... ....+++|+.|++++|+........+ ..++.|+...+.+
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 33221 23468999999999998632222222 4456665544443
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=5.5e-16 Score=164.12 Aligned_cols=198 Identities=19% Similarity=0.215 Sum_probs=126.3
Q ss_pred CeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccc-hhhcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLP-VEIKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l 654 (920)
++|++|++++|.+..++. .++++++|++|++++|.+..+|. .+.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999886654 78889999999999998887765 6788999999999999888776 46888999999999
Q ss_pred cccCCCcccccccccCccCCcccCccccccccCch---hHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEe
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANST---ILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVE 731 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~ 731 (920)
++|.... ..+..++.+++|++|++..+... .+..+.. +++|+.|+++
T Consensus 108 ~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-------------------------l~~L~~L~Ls 157 (276)
T 2z62_A 108 VETNLAS-----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-------------------------LTNLEHLDLS 157 (276)
T ss_dssp TTSCCCC-----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-------------------------CTTCCEEECC
T ss_pred CCCCccc-----cCchhcccCCCCCEEECcCCccceecCchhhcc-------------------------CCCCCEEECC
Confidence 8863221 11224666777777776665411 2333444 4445555555
Q ss_pred eCCCCcccccccCCCCccccc----EEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEeccc
Q 047503 732 STSREETFDIQSLGSPPQYLE----HLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 732 ~~~~~~~~~l~~l~~~~~~L~----~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 806 (920)
+|...... ...+...+ +|+ +|+++++ ...+|.......+|+.|+|++|.++..+...+..+++|+.|+|++|.
T Consensus 158 ~N~l~~~~-~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 158 SNKIQSIY-CTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCCCEEC-GGGGHHHH-TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCcCC-HHHhhhhh-hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 44332211 01111111 222 4444443 22333333334477778887777776665666777778877777665
Q ss_pred C
Q 047503 807 D 807 (920)
Q Consensus 807 ~ 807 (920)
+
T Consensus 236 ~ 236 (276)
T 2z62_A 236 W 236 (276)
T ss_dssp B
T ss_pred c
Confidence 4
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=2.7e-16 Score=171.79 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=145.1
Q ss_pred hhhccC--CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccc--cCccccCCCCCcEEeecCCccc-ccchhhccc
Q 047503 572 KLVAEF--KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKV--LPKSIGRLLNLQTLDLKHSLVT-QLPVEIKNL 646 (920)
Q Consensus 572 ~~~~~l--~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~l 646 (920)
..+..+ +.+++|++++|.+...+..+..+.+|++|++++|.+.. +|..+.++++|++|++++|.++ ..|..+..+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 445555 78999999999988777677889999999999998773 7888899999999999999877 567788899
Q ss_pred ccCCeEeecccCCCcccccccccCccCCcccCcccccccc-Cc---hhHHhcccCC-CCcEEEEEec--CCcchhHHHHh
Q 047503 647 KKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQA-NS---TILKELRKLR-QLRKLGIQLT--NDDGKNLCASI 719 (920)
Q Consensus 647 ~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~---~~~~~l~~l~-~L~~L~l~~~--~~~~~~l~~~l 719 (920)
++|++|++++|... ....++..+..+++|++|++..+ .. .....+..++ +|+.|+++.+ ......++..+
T Consensus 142 ~~L~~L~L~~~~~l---~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 142 SNLVRLNLSGCSGF---SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCSEEECTTCBSC---CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CCCCEEECCCCCCC---CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 99999999987211 01135555778899999999988 52 2456688899 9999999944 34445677888
Q ss_pred ccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCc---cccCCCCcceEEEEee
Q 047503 720 ADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPD---WIFKLKNLVRIGLYWS 781 (920)
Q Consensus 720 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~---~~~~l~~L~~L~L~~~ 781 (920)
..+++|++|++++|.......+..+...+ +|++|+++++....+. .+..+++|+.|+|++|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 89999999999988632221122333333 4555555444311111 2334444444444444
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1.9e-17 Score=184.71 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=63.5
Q ss_pred hhhhccCCeeeEEEccCCCCCc-----CcccccCcccCceeeecCCCcc----ccCccc-------cCCCCCcEEeecCC
Q 047503 571 TKLVAEFKLMKVLDFEDAPIEF-----LPEEVGNLFHLHYLSVRNTKVK----VLPKSI-------GRLLNLQTLDLKHS 634 (920)
Q Consensus 571 ~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~ 634 (920)
...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3446677888888888887762 3445667888888888886544 334443 67788888888888
Q ss_pred cccc-----cchhhcccccCCeEeecccC
Q 047503 635 LVTQ-----LPVEIKNLKKLRYLLVYHSD 658 (920)
Q Consensus 635 ~l~~-----lp~~i~~l~~L~~L~l~~~~ 658 (920)
.++. +|..+.++++|++|++++|.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 7775 67777888888888888764
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=1.4e-15 Score=160.34 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=54.8
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchh-hcccccCCeEe
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLL 653 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 653 (920)
..+++|+.|+++++.+..++ .++.+++|++|++++|.+..++ .+.++++|++|++++|.++.+|.. +..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45566777777777766554 3666777777777777766654 566777777777777777666543 56677777777
Q ss_pred eccc
Q 047503 654 VYHS 657 (920)
Q Consensus 654 l~~~ 657 (920)
+++|
T Consensus 116 L~~n 119 (272)
T 3rfs_A 116 LVEN 119 (272)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7665
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=3.4e-17 Score=182.63 Aligned_cols=257 Identities=15% Similarity=0.082 Sum_probs=143.8
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccc-----cCccccCCCCCcEEeecCCccc----ccchhh------
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKV-----LPKSIGRLLNLQTLDLKHSLVT----QLPVEI------ 643 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~----~lp~~i------ 643 (920)
.|+...+....+..++..+..+++|++|+|++|.+.. ++..+.++++|++|+|++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444455677788888999999999988773 4455778999999999887544 345444
Q ss_pred -cccccCCeEeecccCCCcccccccccCccCCcccCccccccccCch------hHHhcccC---------CCCcEEEEEe
Q 047503 644 -KNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANST------ILKELRKL---------RQLRKLGIQL 707 (920)
Q Consensus 644 -~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~------~~~~l~~l---------~~L~~L~l~~ 707 (920)
..+++|++|++++|.+... ....+|..+..+++|++|++..|... ....+..+ ++|+.|+++.
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPT-AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTT-THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HhhCCcccEEECCCCcCCHH-HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 6889999999988754321 11135556677778888877776621 12223333 6677777664
Q ss_pred cCCcch---hHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccC
Q 047503 708 TNDDGK---NLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELT 784 (920)
Q Consensus 708 ~~~~~~---~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~ 784 (920)
+..... .+...+..+++|++|++++|.....-. .. -.|.++..+++|+.|+|++|.++
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~-~~------------------l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-EH------------------LLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-HH------------------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-HH------------------HHHHHhhcCCCccEEECcCCCCC
Confidence 433322 222455566677777777665431100 00 01123444555555555555543
Q ss_pred ----CCcccccCCCcccceeEEecccCCCe----eeEcc--CCccccceeeeccCCCCc----eeeEcC-CCCccccEEE
Q 047503 785 ----NDPMNVLQALPNLLELRLRDAYDYEK----LHFKD--GWFPRLQRLVLLDLKGVT----LMMIDK-GAMPCLRELK 849 (920)
Q Consensus 785 ----~~~~~~l~~lp~L~~L~L~~~~~~~~----~~~~~--~~~~~L~~L~l~~~~~l~----~~~~~~-~~~~~L~~L~ 849 (920)
...+..+..+|+|+.|+|++|.+... ++... +.+++|++|++++|..-. .++... ..+|+|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 22333445555555555555544322 11111 225566666666553222 133222 3456666666
Q ss_pred EecCCC
Q 047503 850 IGPCPL 855 (920)
Q Consensus 850 l~~c~~ 855 (920)
+++|+.
T Consensus 310 l~~N~l 315 (386)
T 2ca6_A 310 LNGNRF 315 (386)
T ss_dssp CTTSBS
T ss_pred ccCCcC
Confidence 666653
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.59 E-value=2.3e-14 Score=161.19 Aligned_cols=302 Identities=14% Similarity=0.083 Sum_probs=182.8
Q ss_pred CCccccchhhHHHHHHHH-hc---C-CCCcEEEEE--EcCCCCcHHHHHHHHhcCcccc---CCCC-ceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWL-VN---G-RKQRSVVAL--VGQGGIGKTTLAGKLFNNQYVM---NHFD-CRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L-~~---~-~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~v~~~~~~ 238 (920)
++.++||++++++|.+++ .. + ......+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 368999999999999998 42 2 023456666 9999999999999999852211 1222 3678887677788
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch--------hhhHHHHhccCC---
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE--------LWGDVEHALLDN--- 305 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~--------~~~~l~~~l~~~--- 305 (920)
..++..++.+++.... ....+..++...+.+.+. +++++|||||+|... .+..+...+...
T Consensus 101 ~~~~~~l~~~l~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQ------VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp HHHHHHHHHHHTCCCC------CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred HHHHHHHHHHhCCCCC------CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 8899999988854311 112344566777777775 679999999997642 233332222211
Q ss_pred C--CCcEEEEEccchhhhhhcc-------cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhC
Q 047503 306 K--KGSRIMLTTRHKAVADFCK-------QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCG 376 (920)
Q Consensus 306 ~--~gs~iivTtR~~~v~~~~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~ 376 (920)
+ ....+|+||+...+..... ... ...+.+.+++.++++++|.+.+......... -.+....|++.|+
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYG 250 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHC
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHH
Confidence 2 3456888887665432111 111 1339999999999999997654211100111 2356778899999
Q ss_pred ------CchHHHHHHHhhh---c--CCC--CChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhcc
Q 047503 377 ------GLPLAIVAVGGLL---S--TKH--GSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGL 443 (920)
Q Consensus 377 ------glPlai~~~~~~l---~--~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~ 443 (920)
|.|..+..+.... + ... -+.+.+..++..... ...+.-.+..||.+.+.++..++.
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~l~~~~~~~l~aia~ 319 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------ASIQTHELEALSIHELIILRLIAE 319 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 9997655554321 1 111 123334434332110 233455778899999999988886
Q ss_pred CC--CCceechhhHHHHHHHc--CCccCCCCCChHHHHHHHHHHHHhcccccccc
Q 047503 444 FP--QGYSISCARLIRLWIAE--GFVPYSTRPPSEQLGEEYLSELIDRSLVHVSR 494 (920)
Q Consensus 444 fp--~~~~i~~~~li~~W~a~--g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (920)
+. .+..+...++...|... .... ...........+++.|.+.++|....
T Consensus 320 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 320 ATLGGMEWINAGLLRQRYEDASLTMYN--VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHHHHHSC--CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhcCCCCccHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 53 23345555555444211 0110 01122455678899999999997753
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=4e-15 Score=159.87 Aligned_cols=208 Identities=19% Similarity=0.210 Sum_probs=155.5
Q ss_pred EccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCccc
Q 047503 584 DFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHE 663 (920)
Q Consensus 584 ~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 663 (920)
.+..+.+... .....+.+|++|+++++.+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++|...
T Consensus 25 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~--- 98 (308)
T 1h6u_A 25 AAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK--- 98 (308)
T ss_dssp HTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS---
T ss_pred HhCCCCcCce-ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC---
Confidence 3444444432 23557899999999999999988 68899999999999999999988 999999999999997422
Q ss_pred ccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCccccccc
Q 047503 664 RGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQS 743 (920)
Q Consensus 664 ~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~ 743 (920)
.++ .++.+++|++|++..+. ... ++ .+..+++|+.|++++|...... .
T Consensus 99 ---~~~-~~~~l~~L~~L~l~~n~----------------------l~~--~~-~l~~l~~L~~L~l~~n~l~~~~---~ 146 (308)
T 1h6u_A 99 ---NVS-AIAGLQSIKTLDLTSTQ----------------------ITD--VT-PLAGLSNLQVLYLDLNQITNIS---P 146 (308)
T ss_dssp ---CCG-GGTTCTTCCEEECTTSC----------------------CCC--CG-GGTTCTTCCEEECCSSCCCCCG---G
T ss_pred ---Cch-hhcCCCCCCEEECCCCC----------------------CCC--ch-hhcCCCCCCEEECCCCccCcCc---c
Confidence 222 45556666666655443 111 11 2567788888888888765432 2
Q ss_pred CCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccc
Q 047503 744 LGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQ 822 (920)
Q Consensus 744 l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~ 822 (920)
+..++ +|+.|+++++ ...++. +..+++|+.|+|++|.+.... .+..+++|+.|+|++|.+.... ....+++|+
T Consensus 147 l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 147 LAGLT-NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp GGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred ccCCC-CccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence 55566 9999999997 455665 889999999999999987643 3889999999999999776543 357799999
Q ss_pred eeeeccCCCCceee
Q 047503 823 RLVLLDLKGVTLMM 836 (920)
Q Consensus 823 ~L~l~~~~~l~~~~ 836 (920)
.|++.+++ +...+
T Consensus 221 ~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 221 IVTLTNQT-ITNQP 233 (308)
T ss_dssp EEEEEEEE-EECCC
T ss_pred EEEccCCe-eecCC
Confidence 99999875 34333
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=6.6e-15 Score=155.11 Aligned_cols=195 Identities=21% Similarity=0.268 Sum_probs=113.8
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccchh-hcccccCCeEeecc
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVYH 656 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 656 (920)
.++.++++++.++.+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45677777777777776543 567777777777776664 566777777777777777777654 36677777777776
Q ss_pred cCCCcccccccccC-ccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCC
Q 047503 657 SDNGTHERGVKIQE-GFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSR 735 (920)
Q Consensus 657 ~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~ 735 (920)
|.. ..+|. .+..+++|++|++..+... . ..+..+..+++|++|++++|..
T Consensus 95 n~l------~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~-~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 95 NKL------QALPIGVFDQLVNLAELRLDRNQLK----------------------S-LPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SCC------CCCCTTTTTTCSSCCEEECCSSCCC----------------------C-CCTTTTTTCTTCCEEECCSSCC
T ss_pred CcC------CcCCHhHcccccCCCEEECCCCccC----------------------e-eCHHHhCcCcCCCEEECCCCcC
Confidence 522 12222 2345555555554443210 0 0011234556666666666644
Q ss_pred CcccccccCCCCcccccEEEEecc-CCCCCc-cccCCCCcceEEEEeeccCCCcccccCCCcccceeEEeccc
Q 047503 736 EETFDIQSLGSPPQYLEHLYLVGS-MKNLPD-WIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 736 ~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~-~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 806 (920)
... +...+...+ +|++|+|+++ ...+|. .+..+++|+.|+|++|.+...+...+..+++|+.|+|++|.
T Consensus 146 ~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSL-PKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCC-CTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Ccc-CHhHccCCc-ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 321 112233333 5555555554 233332 35667777777777777766555566777777777777664
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=1e-13 Score=152.14 Aligned_cols=300 Identities=12% Similarity=0.126 Sum_probs=178.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCC------CHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGREC------MKKDLL 242 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~------~~~~~~ 242 (920)
.++.++||++++++|.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 3567999999999999998763 589999999999999999998752 1 6777764332 445555
Q ss_pred HHHHHHHhhh------cc-----CCccccCCcCCHHHHHHHHHHHhcC-CcEEEEEEcCCCchh---------hhHHHHh
Q 047503 243 IKMIKEFHQL------TG-----QSALGEMNNMEEKDLIIAVRQYLHD-KNYMIVLDDVWKIEL---------WGDVEHA 301 (920)
Q Consensus 243 ~~i~~~l~~~------~~-----~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~l~~~ 301 (920)
..+...+... .+ ..........+..++...+.+.... ++.+||+||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 5555543220 00 0000000123456667777766653 499999999977543 2222222
Q ss_pred ccCCCCCcEEEEEccchhh-hhh---ccc----C-CccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHH
Q 047503 302 LLDNKKGSRIMLTTRHKAV-ADF---CKQ----S-SFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIV 372 (920)
Q Consensus 302 l~~~~~gs~iivTtR~~~v-~~~---~~~----~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~ 372 (920)
. +...+.++|+|++.... ... ... . .....+.+.+|+.+|+.+++.+....... .. -.+.+..|+
T Consensus 159 ~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--~~---~~~~~~~i~ 232 (350)
T 2qen_A 159 Y-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--DV---PENEIEEAV 232 (350)
T ss_dssp H-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC--CC---CHHHHHHHH
T ss_pred H-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHH
Confidence 2 22247889999887543 211 010 0 11247899999999999999875422210 11 135678899
Q ss_pred HHhCCchHHHHHHHhhhcCCCCChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCC---hhhHHHHHhhhccCCCCce
Q 047503 373 AKCGGLPLAIVAVGGLLSTKHGSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDL---PHHLKSCLLYFGLFPQGYS 449 (920)
Q Consensus 373 ~~c~glPlai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~lk~cfl~~a~fp~~~~ 449 (920)
+.|+|+|+++..++..+..... ...+..... +.+...+.-.+..+ ++..+..+..+|. + .
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGD-FGRAMKRTL------------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC-HHHHHHHHH------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHhCCCHHHHHHHHHHHhcccc-HhHHHHHHH------------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 9999999999998876432111 222211110 11111111111122 6778888888887 2 1
Q ss_pred echhhHHHHHHHcCCccCCCCCChHHHHHHHHHHHHhccccccccccCceEe-cHHHHHHHH
Q 047503 450 ISCARLIRLWIAEGFVPYSTRPPSEQLGEEYLSELIDRSLVHVSRRARSCRV-HDLMHEIIL 510 (920)
Q Consensus 450 i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~m-Hdlv~~~~~ 510 (920)
++...+.....+. . . .........+++.|.+.+++.... ..|.+ |++++++.+
T Consensus 296 ~~~~~l~~~~~~~-~----~-~~~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVK-G----T-KIPEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHT-T----C-CCCHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHH-h----C-CCCHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 3334444333221 1 0 112456778999999999998753 34554 778887653
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=9e-15 Score=154.74 Aligned_cols=204 Identities=23% Similarity=0.204 Sum_probs=148.3
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccC-ccccCCCCCcEE
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTL 629 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L 629 (920)
+.+++|.+.++.. ....+..|.++++|++|++++|.+..++ ..++++.+|++|++++|.+..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4688887765543 2333446789999999999999998765 47899999999999999999776 568999999999
Q ss_pred eecCCcccccch-hhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCch--hHHhcccCCCCcEEEEE
Q 047503 630 DLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANST--ILKELRKLRQLRKLGIQ 706 (920)
Q Consensus 630 ~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~ 706 (920)
++++|.+..++. .+..+++|++|++++|... ...+|..++.+++|++|++..+... ....+..+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------- 172 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--------- 172 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC----CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH---------
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccc----eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh---------
Confidence 999999998876 6899999999999997432 1236778899999999998877511 11122222
Q ss_pred ecCCcchhHHHHhccCCCCC-EEEEeeCCCCcccccccCCCCcccccEEEEecc-CCCCCcc-ccCCCCcceEEEEeecc
Q 047503 707 LTNDDGKNLCASIADMENLE-SLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-MKNLPDW-IFKLKNLVRIGLYWSEL 783 (920)
Q Consensus 707 ~~~~~~~~l~~~l~~~~~L~-~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~-~~~l~~L~~L~L~~~~l 783 (920)
..++.|. +|++++|...... ....... +|+.|+++++ ...+|.. +..+++|+.|+|++|.+
T Consensus 173 -------------~~L~~l~l~L~ls~n~l~~~~--~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 173 -------------HQMPLLNLSLDLSLNPMNFIQ--PGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -------------HTCTTCCEEEECCSSCCCEEC--TTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred -------------hhccccceeeecCCCcccccC--ccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 2223333 5666666554321 1122233 6888888876 4555544 57889999999999988
Q ss_pred CCC
Q 047503 784 TND 786 (920)
Q Consensus 784 ~~~ 786 (920)
.++
T Consensus 237 ~c~ 239 (276)
T 2z62_A 237 DCS 239 (276)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.1e-14 Score=154.83 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=55.9
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccchhhcccccCCeEe
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLL 653 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 653 (920)
.++++|+.++++++.++.+|..+. .+|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 445556666666666665555442 45666666666655443 3455666666666666666555543 5556666666
Q ss_pred ecccCCCcccccccccCccCCcccCcccccccc
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQA 686 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~ 686 (920)
+++|.+ ..+|..+..+++|++|++..+
T Consensus 84 Ls~N~l------~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 84 LSHNQL------QSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp CCSSCC------SSCCCCTTTCTTCCEEECCSS
T ss_pred CCCCcC------CcCchhhccCCCCCEEECCCC
Confidence 665421 234444445555555554444
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4e-14 Score=149.09 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=46.5
Q ss_pred cCceeeecCCCccccCccccCCCCCcEEeecCCcccccch-hhcccccCCeEeeccc
Q 047503 602 HLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHS 657 (920)
Q Consensus 602 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 657 (920)
.+++++++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence 57889999999999998764 689999999999988875 6888999999999886
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=154.42 Aligned_cols=206 Identities=17% Similarity=0.146 Sum_probs=132.2
Q ss_pred cCCeeeEEEccCCCCC-cCcccc--cCcccCceeeecCCCcccc-C----ccccCCCCCcEEeecCCcccccc-hhhccc
Q 047503 576 EFKLMKVLDFEDAPIE-FLPEEV--GNLFHLHYLSVRNTKVKVL-P----KSIGRLLNLQTLDLKHSLVTQLP-VEIKNL 646 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~-~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l 646 (920)
.+++|++|++++|.+. ..|..+ +.+.+|++|++++|.+... | ..+..+++|++|++++|.+..+| ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4566999999999987 556666 8899999999999988742 2 33457889999999999888776 468889
Q ss_pred ccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHH-HhccCCCC
Q 047503 647 KKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCA-SIADMENL 725 (920)
Q Consensus 647 ~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~l~~~~~L 725 (920)
++|++|++++|..... .....+..++.+++|++|++..+....+ ...+. .+..+++|
T Consensus 169 ~~L~~L~Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~l---------------------~~~~~~l~~~l~~L 226 (310)
T 4glp_A 169 PALTSLDLSDNPGLGE-RGLMAALCPHKFPAIQNLALRNTGMETP---------------------TGVCAALAAAGVQP 226 (310)
T ss_dssp TTCCEEECCSCTTCHH-HHHHTTSCTTSSCCCCSCBCCSSCCCCH---------------------HHHHHHHHHHTCCC
T ss_pred CCCCEEECCCCCCccc-hhhhHHHhhhcCCCCCEEECCCCCCCch---------------------HHHHHHHHhcCCCC
Confidence 9999999998743210 0011122235677777777665531111 11222 24677888
Q ss_pred CEEEEeeCCCCcccc--cccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEE
Q 047503 726 ESLTVESTSREETFD--IQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRL 802 (920)
Q Consensus 726 ~~L~L~~~~~~~~~~--l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L 802 (920)
++|+|++|......+ +..+..++ +|++|+|+++ +..+|.++. ++|+.|+|++|.+++. +.+..+|+|+.|+|
T Consensus 227 ~~L~Ls~N~l~~~~p~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L 301 (310)
T 4glp_A 227 HSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA--PQPDELPEVDNLTL 301 (310)
T ss_dssp SSEECTTSCCCCCCCSCCSSCCCCT-TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC--CCTTSCCCCSCEEC
T ss_pred CEEECCCCCCCccchhhHHhccCcC-cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC--chhhhCCCccEEEC
Confidence 889998887654321 12222223 6777777665 345665543 6777777777776543 22456677777777
Q ss_pred ecccCC
Q 047503 803 RDAYDY 808 (920)
Q Consensus 803 ~~~~~~ 808 (920)
++|.+.
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 666543
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=5.3e-14 Score=145.24 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=129.7
Q ss_pred CCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCc-ccccch-hhcccccCCeEeecc-cCCCccccc
Q 047503 590 IEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSL-VTQLPV-EIKNLKKLRYLLVYH-SDNGTHERG 665 (920)
Q Consensus 590 ~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~ 665 (920)
+..+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|. ++.+|. .+..+++|++|++++ |..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l------ 93 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL------ 93 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC------
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe------
Confidence 555555 32 256666666666666655 45566666666666664 665554 455666666666654 210
Q ss_pred ccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCC
Q 047503 666 VKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLG 745 (920)
Q Consensus 666 ~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~ 745 (920)
..++ +..+..+++|+.|++++|....
T Consensus 94 ~~i~----------------------------------------------~~~f~~l~~L~~L~l~~n~l~~-------- 119 (239)
T 2xwt_C 94 TYID----------------------------------------------PDALKELPLLKFLGIFNTGLKM-------- 119 (239)
T ss_dssp CEEC----------------------------------------------TTSEECCTTCCEEEEEEECCCS--------
T ss_pred eEcC----------------------------------------------HHHhCCCCCCCEEeCCCCCCcc--------
Confidence 0011 0123445667777777664322
Q ss_pred CCcccccEEEEeccCCCCCccccCCCCcc---eEEEEee-ccCCCcccccCCCcccc-eeEEecccCCCeeeEccCCccc
Q 047503 746 SPPQYLEHLYLVGSMKNLPDWIFKLKNLV---RIGLYWS-ELTNDPMNVLQALPNLL-ELRLRDAYDYEKLHFKDGWFPR 820 (920)
Q Consensus 746 ~~~~~L~~L~L~~~~~~lp~~~~~l~~L~---~L~L~~~-~l~~~~~~~l~~lp~L~-~L~L~~~~~~~~~~~~~~~~~~ 820 (920)
+|. +..+++|+ .|+|++| .+.......+.++++|+ .|+|++|.+. .++......++
T Consensus 120 -----------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~ 180 (239)
T 2xwt_C 120 -----------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK 180 (239)
T ss_dssp -----------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCE
T ss_pred -----------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCC
Confidence 232 34445555 8888888 77766666688888999 9998887665 44432222378
Q ss_pred cceeeeccCCCCceeeE-cCCCC-ccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 821 LQRLVLLDLKGVTLMMI-DKGAM-PCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 821 L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
|+.|++.++..++.++. .+..+ ++|+.|++++|+ ++.+|.. .+++|+.|++.+++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 99999998765776654 35667 899999999887 6677765 67899999998876
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=1.7e-14 Score=153.27 Aligned_cols=200 Identities=20% Similarity=0.216 Sum_probs=114.1
Q ss_pred cccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccc-hhhcccccCCeEeecccCCCcccccccccCccCC
Q 047503 596 EVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLP-VEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGS 674 (920)
Q Consensus 596 ~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~ 674 (920)
.++++.+|+.++++++.+..+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|.+ ..++.. +.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~-~~ 75 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL------TKLQVD-GT 75 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC------CEEECC-SC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc------CcccCC-CC
Confidence 35677888888888888888887764 68888888888888664 4688888888888887521 111111 22
Q ss_pred cccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEE
Q 047503 675 LTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHL 754 (920)
Q Consensus 675 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 754 (920)
+++|+.|++++|...
T Consensus 76 -----------------------------------------------l~~L~~L~Ls~N~l~------------------ 90 (290)
T 1p9a_G 76 -----------------------------------------------LPVLGTLDLSHNQLQ------------------ 90 (290)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCS------------------
T ss_pred -----------------------------------------------CCcCCEEECCCCcCC------------------
Confidence 233444444443221
Q ss_pred EEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCce
Q 047503 755 YLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTL 834 (920)
Q Consensus 755 ~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 834 (920)
.+|..+..+++|+.|+|++|.++...+..+.++++|+.|+|++|.+....+.....+++|+.|++.++. ++.
T Consensus 91 -------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 162 (290)
T 1p9a_G 91 -------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTE 162 (290)
T ss_dssp -------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSC
T ss_pred -------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCc
Confidence 122233344444555555554444444444455555555555444332222222344555555555542 333
Q ss_pred eeEc-CCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 835 MMID-KGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 835 ~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
++.. +..+++|+.|++++|. ++.+|.++..+++|+.|++.++|
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 3332 2456677777777665 55677777777777777777654
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=8.1e-13 Score=145.41 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=176.2
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC-----CCHHHHHH
Q 047503 169 EDDEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE-----CMKKDLLI 243 (920)
Q Consensus 169 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~~ 243 (920)
.++.++||+++++.|.+ +.. +++.|+|++|+|||||++++++. ... ..+|+++... .+....+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 35689999999999999 644 49999999999999999999885 222 2588887642 34455555
Q ss_pred HHHHHHhhh-------------c-cCCccc---cC-----CcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-----hhh
Q 047503 244 KMIKEFHQL-------------T-GQSALG---EM-----NNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-----LWG 296 (920)
Q Consensus 244 ~i~~~l~~~-------------~-~~~~~~---~~-----~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----~~~ 296 (920)
.+.+.+... . +...+. .. .......+...+.+.-+ ++.+|||||++..+ .|.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 555544320 0 000000 00 11234455555544322 49999999997632 233
Q ss_pred HHHHhccCCCCCcEEEEEccchhh-hhh---cc---c-CC-ccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHH
Q 047503 297 DVEHALLDNKKGSRIMLTTRHKAV-ADF---CK---Q-SS-FVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKL 367 (920)
Q Consensus 297 ~l~~~l~~~~~gs~iivTtR~~~v-~~~---~~---~-~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~ 367 (920)
.+...+.+...+.++|+|++.... ... .. . .+ ....+.+.+|+.+++.+++.+....... . ....
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~-~~~~--- 232 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--D-FKDY--- 232 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--C-CCCH---
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--C-CCcH---
Confidence 333333222246789999997653 211 00 0 11 1257899999999999999875421110 1 1111
Q ss_pred HHHHHHHhCCchHHHHHHHhhhcCCCCChHHHHHHH-hccCCCCCCCCchhhHHHHh-hhccC--CChhhHHHHHhhhcc
Q 047503 368 SHEIVAKCGGLPLAIVAVGGLLSTKHGSVSEWRRSL-EGLGSKLGSDPHLKICSRVL-SEGYH--DLPHHLKSCLLYFGL 443 (920)
Q Consensus 368 ~~~I~~~c~glPlai~~~~~~l~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l-~~sy~--~L~~~lk~cfl~~a~ 443 (920)
..|++.|+|+|+++..++..+..... ...|...+ +.. ...+..-+ .+.+. .||+..+..+..+|.
T Consensus 233 -~~i~~~t~G~P~~l~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 233 -EVVYEKIGGIPGWLTYFGFIYLDNKN-LDFAINQTLEYA---------KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp -HHHHHHHCSCHHHHHHHHHHHHHHCC-HHHHHHHHHHHH---------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred -HHHHHHhCCCHHHHHHHHHHHccccc-hHHHHHHHHHHH---------HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 78999999999999999887643222 33332211 100 00111111 12221 688889999999988
Q ss_pred CCCCceechhhHHHHHH-HcCCccCCCCCChHHHHHHHHHHHHhccccccccccCceE-ecHHHHHHH
Q 047503 444 FPQGYSISCARLIRLWI-AEGFVPYSTRPPSEQLGEEYLSELIDRSLVHVSRRARSCR-VHDLMHEII 509 (920)
Q Consensus 444 fp~~~~i~~~~li~~W~-a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~-mHdlv~~~~ 509 (920)
- . +...+....- ..|. .........+++.|.+.++|.... ..|+ .|++++++.
T Consensus 302 g---~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 C---G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp C---B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred C---C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 2 1 3333332210 1121 012455678999999999998754 4566 478888753
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3.2e-14 Score=155.98 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=119.6
Q ss_pred eEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcc-cccch-hhcccccCCeEeeccc
Q 047503 581 KVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLV-TQLPV-EIKNLKKLRYLLVYHS 657 (920)
Q Consensus 581 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l-~~lp~-~i~~l~~L~~L~l~~~ 657 (920)
++++.+++.++.+|..+ ..++++|+|++|.|+.+|. .+.++++|++|+|++|.+ +.+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777888888888766 4678888888888888886 477888888888888876 44654 3677777776544332
Q ss_pred CCCcccccccc-cCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 658 DNGTHERGVKI-QEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 658 ~~~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
.....+ |..++.+++|++|++..+........ .+....++..|++.++...
T Consensus 90 -----N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 90 -----NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-----------------------HKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp -----TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-----------------------TTCCBSSCEEEEEESCTTC
T ss_pred -----CcccccCchhhhhccccccccccccccccCCch-----------------------hhcccchhhhhhhcccccc
Confidence 112233 23345555555555544431111110 1112223344444433222
Q ss_pred cccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEe-eccCCCcccccCCCcccceeEEecccCCCeeeEc
Q 047503 737 ETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYW-SELTNDPMNVLQALPNLLELRLRDAYDYEKLHFK 814 (920)
Q Consensus 737 ~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~-~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~ 814 (920)
..++...+...+..++.|+++++ +..+|.......+|+.|.+.+ |.+...+...+.++++|+.|+|++|.+.. ++
T Consensus 142 ~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp-- 218 (350)
T 4ay9_X 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LP-- 218 (350)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CC--
T ss_pred ccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cC--
Confidence 22211222222223444444443 233333333344455555543 23333333344555555555555544331 11
Q ss_pred cCCccccceeeeccCCCCceeeEcCCCCccccEEEEe
Q 047503 815 DGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIG 851 (920)
Q Consensus 815 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 851 (920)
...|.+|+.|.+.++.+++.+| ....+++|+.+++.
T Consensus 219 ~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 219 SYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp SSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 2335555555555554444444 23445555555543
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=2.4e-14 Score=150.99 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=109.7
Q ss_pred cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCcc-ccCCCCCc
Q 047503 549 TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQ 627 (920)
Q Consensus 549 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~ 627 (920)
..+++++.|.+.++.... + ..+..+++|++|++++|.+..++ .++.+++|++|++++|.+..+|.. +.++++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~---~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS---V-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCC---C-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCccc---c-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345566666665543211 1 23678999999999999998765 788999999999999999988765 68899999
Q ss_pred EEeecCCcccccchh-hcccccCCeEeecccCCCcccccccccC-ccCCcccCccccccccCchhHHhcccCCCCcEEEE
Q 047503 628 TLDLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGI 705 (920)
Q Consensus 628 ~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l 705 (920)
+|++++|.++.+|.. +..+++|++|++++|.. ..+|. .++.+++|++|++..+..
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l----------------- 169 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL------QSLPKGVFDKLTNLTELDLSYNQL----------------- 169 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCC-----------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCcc------CccCHHHhccCccCCEEECCCCCc-----------------
Confidence 999999999988765 78999999999998732 23333 356666777666655431
Q ss_pred EecCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 706 QLTNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 706 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
.. ..+..+..+++|+.|++++|...
T Consensus 170 -----~~-~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 170 -----QS-LPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp -----CC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred -----Cc-cCHHHhcCCccCCEEECCCCcCC
Confidence 10 01122456677777777777544
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=3.1e-14 Score=147.03 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=129.2
Q ss_pred CeeeEEEccCCCCCcCcc-cccCcccCceeeecCCC-ccccCc-cccCCCCCcEEeecC-Ccccccch-hhcccccCCeE
Q 047503 578 KLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTK-VKVLPK-SIGRLLNLQTLDLKH-SLVTQLPV-EIKNLKKLRYL 652 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L 652 (920)
+.|++|++++|.++.+|. .++.+++|++|++++|. +..+|. .+.++++|++|++++ |.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999998875 78999999999999997 998886 688999999999998 89998875 58899999999
Q ss_pred eecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEec-CCcchhHHHHhccCCCCC-EEEE
Q 047503 653 LVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLT-NDDGKNLCASIADMENLE-SLTV 730 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~l~~~l~~~~~L~-~L~L 730 (920)
++++|.. ..+|. ++.+++|+ .|+.|+++.+ .... ..+..+..+++|+ .|++
T Consensus 111 ~l~~n~l------~~lp~-~~~l~~L~-------------------~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTGL------KMFPD-LTKVYSTD-------------------IFFILEITDNPYMTS-IPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEECC------CSCCC-CTTCCBCC-------------------SEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEEC
T ss_pred eCCCCCC------ccccc-cccccccc-------------------cccEEECCCCcchhh-cCcccccchhcceeEEEc
Confidence 9999732 22443 44444443 1123444322 1111 0011244555666 6666
Q ss_pred eeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeec-cCCCcccccCCC-cccceeEEecccCC
Q 047503 731 ESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSE-LTNDPMNVLQAL-PNLLELRLRDAYDY 808 (920)
Q Consensus 731 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l-p~L~~L~L~~~~~~ 808 (920)
++|... .+|......++|+.|+|++|. +.......+.++ ++|+.|+|++|.+.
T Consensus 164 ~~n~l~-------------------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 164 YNNGFT-------------------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CSCCCC-------------------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCc-------------------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 655432 222222222566666666663 554445556666 77777777766554
Q ss_pred CeeeEccCCccccceeeeccCC
Q 047503 809 EKLHFKDGWFPRLQRLVLLDLK 830 (920)
Q Consensus 809 ~~~~~~~~~~~~L~~L~l~~~~ 830 (920)
. ++ ...|++|+.|.+.++.
T Consensus 219 ~-l~--~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 A-LP--SKGLEHLKELIARNTW 237 (239)
T ss_dssp C-CC--CTTCTTCSEEECTTC-
T ss_pred c-CC--hhHhccCceeeccCcc
Confidence 2 22 2357777777776653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=2.1e-14 Score=167.63 Aligned_cols=186 Identities=23% Similarity=0.292 Sum_probs=105.7
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEee
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLV 654 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 654 (920)
..+++|+.|++++|.+..+| .++.+++|++|+|++|.+..+|. +..+++|+.|+|++|.+..+| .+..|++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34555666666666655554 35556666666666666555554 555666666666666555554 4555666666666
Q ss_pred cccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCC
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTS 734 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 734 (920)
++| ....+..+..+++|+.|+++.+.... + ..+..+++|+.|+|++|.
T Consensus 117 s~N-----------------------------~l~~l~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 117 EHN-----------------------------GISDINGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TTS-----------------------------CCCCCGGGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSC
T ss_pred cCC-----------------------------CCCCCccccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCc
Confidence 554 32222234445555555555332222 1 345666777777777776
Q ss_pred CCcccccccCCCCcccccEEEEecc-CCCCCccccCCCCcceEEEEeeccCCCcccccCCCccccee
Q 047503 735 REETFDIQSLGSPPQYLEHLYLVGS-MKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLEL 800 (920)
Q Consensus 735 ~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L 800 (920)
+....+ +..++ +|+.|+|+++ +..+| .+..+++|+.|+|++|.+...+...+..+..+..|
T Consensus 165 l~~~~~---l~~l~-~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l 226 (605)
T 1m9s_A 165 ISDIVP---LAGLT-KLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226 (605)
T ss_dssp CCCCGG---GTTCT-TCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred CCCchh---hccCC-CCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccccccEEecccc
Confidence 544322 44455 6777777765 33443 57778888888888888776655555544444333
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.3e-13 Score=146.67 Aligned_cols=80 Identities=24% Similarity=0.291 Sum_probs=64.3
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEee
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLV 654 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 654 (920)
..+++|+.|++++|.+..++. ++.+++|++|++++|.+..+|. +.++++|++|++++|.++.+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 467778888888888877753 7778888888888888887776 7888888888888888887764 788888888888
Q ss_pred ccc
Q 047503 655 YHS 657 (920)
Q Consensus 655 ~~~ 657 (920)
++|
T Consensus 120 ~~n 122 (291)
T 1h6t_A 120 EHN 122 (291)
T ss_dssp TTS
T ss_pred CCC
Confidence 876
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.2e-14 Score=160.20 Aligned_cols=118 Identities=9% Similarity=0.155 Sum_probs=77.2
Q ss_pred hhhhhhccCCeeeEEEccCCCCCcCc-----ccccCcc-cCceeeecCCCcccc-CccccCC-----CCCcEEeecCCcc
Q 047503 569 FMTKLVAEFKLMKVLDFEDAPIEFLP-----EEVGNLF-HLHYLSVRNTKVKVL-PKSIGRL-----LNLQTLDLKHSLV 636 (920)
Q Consensus 569 ~~~~~~~~l~~Lr~L~L~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l 636 (920)
..+.++...++|++|+|++|.+...+ ..+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 34555666667999999999988654 5667777 899999999988755 4455554 8899999999988
Q ss_pred cccchh-----hccc-ccCCeEeecccCCCcccccccccCccCC-cccCccccccccC
Q 047503 637 TQLPVE-----IKNL-KKLRYLLVYHSDNGTHERGVKIQEGFGS-LTDLQKLYIVQAN 687 (920)
Q Consensus 637 ~~lp~~-----i~~l-~~L~~L~l~~~~~~~~~~~~~~p~~i~~-l~~L~~L~~~~~~ 687 (920)
+..+.. +..+ ++|++|++++|..... ....+...+.. .++|++|++..+.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCc
Confidence 855432 4445 7899999988743211 00111112223 2466666666554
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=7.5e-14 Score=153.83 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=92.5
Q ss_pred EccCCCCC-cCcccccCcccCceeeecCCCccccC-----ccccCCC-CCcEEeecCCccccc-chhhccc-----ccCC
Q 047503 584 DFEDAPIE-FLPEEVGNLFHLHYLSVRNTKVKVLP-----KSIGRLL-NLQTLDLKHSLVTQL-PVEIKNL-----KKLR 650 (920)
Q Consensus 584 ~L~~~~~~-~lp~~i~~l~~L~~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L~ 650 (920)
+++.+.+. .+|..+....+|++|+|++|.+...+ ..+.+++ +|++|+|++|.++.. +..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 44444444 22333333334555555555555443 3344444 555555555555433 2223332 5555
Q ss_pred eEeecccCCCcccccccccCccCCc-ccCccccccccC--chhH----Hhccc-CCCCcEEEEEecCC---cchhHHHHh
Q 047503 651 YLLVYHSDNGTHERGVKIQEGFGSL-TDLQKLYIVQAN--STIL----KELRK-LRQLRKLGIQLTND---DGKNLCASI 719 (920)
Q Consensus 651 ~L~l~~~~~~~~~~~~~~p~~i~~l-~~L~~L~~~~~~--~~~~----~~l~~-l~~L~~L~l~~~~~---~~~~l~~~l 719 (920)
+|++++|...... ...+...+..+ ++|++|++..+. .... ..+.. .++|+.|+++.+.. ....++..+
T Consensus 84 ~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 5555554221100 00011112222 455555555444 1111 11222 13555555542211 112333444
Q ss_pred ccCC-CCCEEEEeeCCCCcccc--c-ccCCCCcccccEEEEeccC-CC-----CCccccC-CCCcceEEEEeeccCCCcc
Q 047503 720 ADME-NLESLTVESTSREETFD--I-QSLGSPPQYLEHLYLVGSM-KN-----LPDWIFK-LKNLVRIGLYWSELTNDPM 788 (920)
Q Consensus 720 ~~~~-~L~~L~L~~~~~~~~~~--l-~~l~~~~~~L~~L~L~~~~-~~-----lp~~~~~-l~~L~~L~L~~~~l~~~~~ 788 (920)
...+ +|++|+|++|....... + ..+...+.+|++|+|+++. .. ++..+.. .++|+.|+|++|.+.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4443 55555555554322110 0 0111221255555555541 11 3333333 2466666666666655433
Q ss_pred ----cccCCCcccceeEEeccc
Q 047503 789 ----NVLQALPNLLELRLRDAY 806 (920)
Q Consensus 789 ----~~l~~lp~L~~L~L~~~~ 806 (920)
..+..+++|+.|+|++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 223455666666666554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=3.6e-13 Score=143.24 Aligned_cols=174 Identities=23% Similarity=0.340 Sum_probs=82.1
Q ss_pred CcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccC
Q 047503 599 NLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDL 678 (920)
Q Consensus 599 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L 678 (920)
.+.+|++|++++|.+..+|. +..+++|++|++++|.++.++. +..+++|++|++++|... .++ .++.+++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~------~~~-~l~~l~~L 114 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK------DLS-SLKDLKKL 114 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------CGG-GGTTCTTC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC------CCh-hhccCCCC
Confidence 34444444444444444432 4444444444444444444443 444444444444443211 111 24444444
Q ss_pred ccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEec
Q 047503 679 QKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVG 758 (920)
Q Consensus 679 ~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 758 (920)
++|++..+....+..+..+++|+.|+++.+.... + ..+..+++|+.|++++|......+ +..++ +|+.|++++
T Consensus 115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~-~L~~L~L~~ 187 (291)
T 1h6t_A 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLT-KLQNLYLSK 187 (291)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG---GTTCT-TCCEEECCS
T ss_pred CEEECCCCcCCCChhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccchh---hcCCC-ccCEEECCC
Confidence 4444444442222334444444444444222211 1 234445555555555554433211 33344 566666655
Q ss_pred c-CCCCCccccCCCCcceEEEEeeccCCCccc
Q 047503 759 S-MKNLPDWIFKLKNLVRIGLYWSELTNDPMN 789 (920)
Q Consensus 759 ~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~ 789 (920)
+ ...+| .+..+++|+.|+|++|.+...+..
T Consensus 188 N~i~~l~-~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 188 NHISDLR-ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp SCCCBCG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred CcCCCCh-hhccCCCCCEEECcCCcccCCccc
Confidence 4 33444 367788889999988887665443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=6.8e-14 Score=161.40 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=76.2
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeeccc
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 657 (920)
.+|++|+|++|.+..+|..+. .+|++|+|++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999999988774 78999999999999999 568999999999999999988 655 9999999987
Q ss_pred CCCcccccccccCccCCcccCccccccccC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
.+. .+|. .+++|++|++..+.
T Consensus 131 ~l~------~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 131 QLT------MLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp CCS------CCCC---CCTTCCEEECCSSC
T ss_pred cCC------CCCC---cCccccEEeCCCCc
Confidence 432 2554 46777777777665
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=1.9e-12 Score=134.52 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=112.6
Q ss_pred CeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccchh-hcccccCCeEeec
Q 047503 578 KLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVY 655 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 655 (920)
...++++++++.+..+|..+. .+|++|++++|.+..++. .+.++++|++|+|++|.++.++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457788999999988887765 588999999998887765 588899999999999988877654 7888999999998
Q ss_pred ccCCCccccccccc-CccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCC
Q 047503 656 HSDNGTHERGVKIQ-EGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTS 734 (920)
Q Consensus 656 ~~~~~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 734 (920)
+|.+. .+| ..++.+++|++|++..+. ... ..+..+..+++|+.|+|++|.
T Consensus 92 ~n~l~------~~~~~~~~~l~~L~~L~L~~N~----------------------l~~-~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 92 NNQLA------SLPLGVFDHLTQLDKLYLGGNQ----------------------LKS-LPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp TSCCC------CCCTTTTTTCTTCCEEECCSSC----------------------CCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCccc------ccChhHhcccCCCCEEEcCCCc----------------------CCC-cChhHhccCCcccEEECcCCc
Confidence 86321 222 223344444444333321 100 000113344555555555543
Q ss_pred CCcccccccCCCCcccccEEEEeccCCCCCc-cccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccC
Q 047503 735 REETFDIQSLGSPPQYLEHLYLVGSMKNLPD-WIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYD 807 (920)
Q Consensus 735 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 807 (920)
. ..+|. .+..+++|+.|+|++|.+.......+..+++|+.|+|++|.+
T Consensus 143 l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 143 L-------------------------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp C-------------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred C-------------------------CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 2 22332 456677777777777777766666677777777777776654
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=2.9e-13 Score=134.97 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=75.9
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccc-cchhhcccccCCeEe
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQ-LPVEIKNLKKLRYLL 653 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~ 653 (920)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34555666666666666555 4566666666666666554443 55566666666666665553 445566666666666
Q ss_pred ecccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEee
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVES 732 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~ 732 (920)
+++|.. ....|..++.+++|++|++..+. ...+..+..+++|+.|+++.+.... ++ .+..+++|+.|++++
T Consensus 119 Ls~n~i-----~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 119 ISHSAH-----DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCSSBC-----BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECB
T ss_pred ecCCcc-----CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeC
Confidence 665421 11233344455555555554443 2222234444444444444222111 11 334445555555554
Q ss_pred C
Q 047503 733 T 733 (920)
Q Consensus 733 ~ 733 (920)
|
T Consensus 191 N 191 (197)
T 4ezg_A 191 Q 191 (197)
T ss_dssp C
T ss_pred c
Confidence 4
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=4.4e-13 Score=133.69 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=114.8
Q ss_pred cCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCCCccccCCCCcceEEEEeeccCCCcccccCCCccccee
Q 047503 721 DMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLEL 800 (920)
Q Consensus 721 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L 800 (920)
.+++|++|++++|.... +..+..++ +|++|+++++....+..+..+++|++|+|++|.+....+..++.+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~~---l~~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD---LTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSC---CTTGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccC---hHHHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34567777777765542 22344555 777888877744444577888999999999998877677788889999999
Q ss_pred EEecccCCCeeeEccCCccccceeeeccCCCCceeeEcCCCCccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 801 RLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMIDKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 801 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+|++|.+....+.....+++|++|++++|..++.++ ....+++|+.|++++|. +..++ .+..+++|++|++++++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 999887765444455678999999999886567666 56789999999999987 55666 78889999999999886
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=1.1e-12 Score=143.65 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=141.4
Q ss_pred CeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCcc-ccCc-cccCCCCCcE-EeecCCcccccch-hhcccccCCeE
Q 047503 578 KLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVK-VLPK-SIGRLLNLQT-LDLKHSLVTQLPV-EIKNLKKLRYL 652 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L~~~~l~~lp~-~i~~l~~L~~L 652 (920)
++++.|+|++|.++.+|. .+.++++|++|+|++|.+. .+|. .+.++++|+. +.+++|+++.+|. .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 579999999999999985 6899999999999999974 5665 4678998876 5556789998854 58999999999
Q ss_pred eecccCCCcccccccccC-ccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccC-CCCCEEEE
Q 047503 653 LVYHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADM-ENLESLTV 730 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~-~~L~~L~L 730 (920)
++++|... .+|. .+....++..|++..+. ++..+. ...+..+ ..++.|++
T Consensus 110 ~l~~n~l~------~~~~~~~~~~~~l~~l~l~~~~-----------~i~~l~-----------~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 110 LISNTGIK------HLPDVHKIHSLQKVLLDIQDNI-----------NIHTIE-----------RNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEECCS------SCCCCTTCCBSSCEEEEEESCT-----------TCCEEC-----------TTSSTTSBSSCEEEEC
T ss_pred cccccccc------cCCchhhcccchhhhhhhcccc-----------cccccc-----------ccchhhcchhhhhhcc
Confidence 99997432 2222 22233334444332211 111100 0112222 35777888
Q ss_pred eeCCCCcccccccCCCCcccccEEEEecc--CCCCCc-cccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccC
Q 047503 731 ESTSREETFDIQSLGSPPQYLEHLYLVGS--MKNLPD-WIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYD 807 (920)
Q Consensus 731 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~lp~-~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~ 807 (920)
++|..... + ......+ +|++|.+.++ ...+|. .+..+++|+.|+|++|.++..+... +.+|+.|.+.++..
T Consensus 162 ~~N~i~~i-~-~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 162 NKNGIQEI-H-NSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYN 235 (350)
T ss_dssp CSSCCCEE-C-TTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTT
T ss_pred ccccccCC-C-hhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCC
Confidence 87766432 1 2222334 7888888653 567775 4678899999999999887655444 44555555555555
Q ss_pred CCeeeEccCCccccceeeecc
Q 047503 808 YEKLHFKDGWFPRLQRLVLLD 828 (920)
Q Consensus 808 ~~~~~~~~~~~~~L~~L~l~~ 828 (920)
.+.++ ....|++|+.+++.+
T Consensus 236 l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCC-CTTTCCSCCEEECSC
T ss_pred cCcCC-CchhCcChhhCcCCC
Confidence 55555 346688888888764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=7.1e-13 Score=154.75 Aligned_cols=172 Identities=21% Similarity=0.241 Sum_probs=133.2
Q ss_pred ccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCc
Q 047503 548 WTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQ 627 (920)
Q Consensus 548 ~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 627 (920)
...++.|+.|.+.++.. ..++ .+..+++|+.|+|++|.+..+|. ++.+++|++|+|++|.+..+| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI---KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCC---CCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCC---CCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 34566677665554432 2223 36889999999999999998876 899999999999999999887 789999999
Q ss_pred EEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEe
Q 047503 628 TLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQL 707 (920)
Q Consensus 628 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 707 (920)
+|+|++|.+..+| .+..|++|++|+|++|.+. .+ ..++.+++|+.|++..+.......+..+++|+.|+++.
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~------~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT------DI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC------CC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCCccC------Cc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence 9999999999886 5899999999999997432 22 45778889999998888733333378888888888885
Q ss_pred cCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 708 TNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 708 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
+.... + ..+..+++|+.|+|++|...
T Consensus 185 N~i~~--l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 185 NHISD--L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCCCB--C-GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCC--C-hHHccCCCCCEEEccCCcCc
Confidence 54433 2 34777888888888877543
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=5.4e-13 Score=143.53 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=56.6
Q ss_pred cCCCCcceEEEEeeccCCCcc--c-ccCCCcccceeEEecccCCCeeeEccCCc---cccceeeeccCCCCceeeEcCCC
Q 047503 768 FKLKNLVRIGLYWSELTNDPM--N-VLQALPNLLELRLRDAYDYEKLHFKDGWF---PRLQRLVLLDLKGVTLMMIDKGA 841 (920)
Q Consensus 768 ~~l~~L~~L~L~~~~l~~~~~--~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~ 841 (920)
..+++|++|+|++|.++.... . .++.+++|+.|+|++|.+....+.....+ ++|++|++++|. ++.++...
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~-- 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL-- 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh--
Confidence 445566666666665532111 0 13455666666666655544333222222 566666666653 33443322
Q ss_pred CccccEEEEecCCCCCccCcccCCCCCCCEEEEecCh
Q 047503 842 MPCLRELKIGPCPLLKEIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 842 ~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 878 (920)
+++|+.|++++|. +..+|. +..+++|+.|++++++
T Consensus 271 ~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 3677777777665 444543 5666777777777665
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=5.3e-11 Score=132.24 Aligned_cols=297 Identities=15% Similarity=0.071 Sum_probs=182.5
Q ss_pred CccccchhhHHHHHHHHhc--CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc----CC--CCceEEEEeCCCC-CHHHH
Q 047503 171 DEVVGIESARDILIGWLVN--GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM----NH--FDCRAWITVGREC-MKKDL 241 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~~~~ 241 (920)
+.++||+++++++.+++.. .....+.+.|+|++|+||||||+.+++...-. .. ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6899999999999988865 22335689999999999999999998852111 11 2356788876666 78888
Q ss_pred HHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchh--hhHH-HHhccCCCCCcEEEEEccch
Q 047503 242 LIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIEL--WGDV-EHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~iivTtR~~ 318 (920)
+..++.++..... .....+...+...+.+.+..++.+|||||++.... +... ...+.....+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSV-----PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCC-----CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHhcCCCC-----CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 8888888753211 11222346677788888887777999999987532 2333 33333322678899999875
Q ss_pred hhh----hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhC---CchH-HHHHHHhhh-
Q 047503 319 AVA----DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCG---GLPL-AIVAVGGLL- 389 (920)
Q Consensus 319 ~v~----~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~---glPl-ai~~~~~~l- 389 (920)
... ...... ....+.+++++.++..++|.+.+.......... .+....|++.++ |.|. |+..+....
T Consensus 175 ~~~~~l~~~l~sr-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 175 NVRDYMEPRVLSS-LGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTSCHHHHHT-CCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhc-CCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 321 111111 114899999999999999998753210001122 245566777777 8876 444433322
Q ss_pred -cC--CCCChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhccCCCCceechhhHHHHHHHcCCcc
Q 047503 390 -ST--KHGSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARLIRLWIAEGFVP 466 (920)
Q Consensus 390 -~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~li~~W~a~g~i~ 466 (920)
+. ..-+.+.+..+++.. ....+.-++..|+.+.+..+..++....+-.+. +......-..| +
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~------------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~- 315 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDY------------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q- 315 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHH------------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C-
T ss_pred HhcCCCccCHHHHHHHHHHH------------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C-
Confidence 21 122466676666532 123355566788888887777777611101111 11111111223 1
Q ss_pred CCCCCChHHHHHHHHHHHHhcccccccc
Q 047503 467 YSTRPPSEQLGEEYLSELIDRSLVHVSR 494 (920)
Q Consensus 467 ~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (920)
..........++..|...+++....
T Consensus 316 ---~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 ---KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1223466778999999999998743
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=5.3e-13 Score=139.51 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=56.4
Q ss_pred cCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeec
Q 047503 576 EFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVY 655 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 655 (920)
.+..+..++++++.+..++ .+..+.+|++|++++|.+..+| .+..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455666667777776665 5667777777777777777776 56777777777777777777766 7777777777777
Q ss_pred cc
Q 047503 656 HS 657 (920)
Q Consensus 656 ~~ 657 (920)
+|
T Consensus 94 ~N 95 (263)
T 1xeu_A 94 RN 95 (263)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=6.2e-11 Score=131.86 Aligned_cols=299 Identities=14% Similarity=0.043 Sum_probs=181.8
Q ss_pred CCccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVM----NHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
++.++||+++++++..++... ......+.|+|++|+||||||+.+++..... +.-...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 368999999999999998542 2345688999999999999999998852111 1113467888888888889999
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCchh----hhHHHHhc---cCC--CCCcEEE
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIEL----WGDVEHAL---LDN--KKGSRIM 312 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~----~~~l~~~l---~~~--~~gs~ii 312 (920)
.++.+++.... ....+..++...+.+.+. +++.+||||+++.... .+.+...+ ... ..+..+|
T Consensus 98 ~l~~~l~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 98 AIAEAVGVRVP------FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHSCCCC------SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHhCCCCC------CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 99988854211 123345666777777774 4688999999986532 22222222 111 4456788
Q ss_pred EEccchhhhh----hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhC---CchH-HHHH
Q 047503 313 LTTRHKAVAD----FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCG---GLPL-AIVA 384 (920)
Q Consensus 313 vTtR~~~v~~----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~---glPl-ai~~ 384 (920)
.||+...... ..........+.+++++.++..+++.+.+.......... .+....|++.++ |.|- ++..
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHH
Confidence 8887653211 111111114789999999999999998753210001111 235567777787 9994 3333
Q ss_pred HHhhhc-----C-CCCChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhc-cCCCCceechhhHHH
Q 047503 385 VGGLLS-----T-KHGSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFG-LFPQGYSISCARLIR 457 (920)
Q Consensus 385 ~~~~l~-----~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a-~fp~~~~i~~~~li~ 457 (920)
+..... . ..-+.+.+..++... ....+.-++..||.+.+..+..++ ++-....+....+.+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~------------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~ 316 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEI------------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYE 316 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHH------------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH------------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 332221 1 111456666665432 122344566788888887776666 443222444444433
Q ss_pred HH----HHcCCccCCCCCChHHHHHHHHHHHHhcccccccc
Q 047503 458 LW----IAEGFVPYSTRPPSEQLGEEYLSELIDRSLVHVSR 494 (920)
Q Consensus 458 ~W----~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (920)
.. -..| + .......+..+++.|...+++....
T Consensus 317 ~~~~~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 317 RYKELTSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 32 2223 1 1223567788999999999998753
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=3.7e-12 Score=133.07 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=107.8
Q ss_pred hccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEe
Q 047503 574 VAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLL 653 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 653 (920)
+..+++|++|++++|.+..+| .++.+.+|++|++++|.+..+|. +.++++|++|++++|.++.+|.... ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 567888999999999988887 68889999999999999998887 8889999999999998888876433 8899999
Q ss_pred ecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeC
Q 047503 654 VYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVEST 733 (920)
Q Consensus 654 l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~ 733 (920)
+++|... .++ .++.+++|+.|++..+....+..+..+++|+.|+++.+..... ..+..+++|+.|++++|
T Consensus 113 L~~N~l~------~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 113 LDNNELR------DTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCSSCCS------BSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred ccCCccC------CCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 9887432 222 4777888888887777633334566666666666664333221 34555666666666665
Q ss_pred C
Q 047503 734 S 734 (920)
Q Consensus 734 ~ 734 (920)
.
T Consensus 183 ~ 183 (263)
T 1xeu_A 183 K 183 (263)
T ss_dssp E
T ss_pred c
Confidence 4
No 115
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=1.7e-11 Score=127.33 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=44.6
Q ss_pred hhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchh-hcccccC
Q 047503 573 LVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVE-IKNLKKL 649 (920)
Q Consensus 573 ~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L 649 (920)
.|.++++|++|+|++|.+..++ ..+..+.+|++|++++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 3455555555555555555433 2345555555555555555554432 34555555555555555555443 3455555
Q ss_pred CeEeeccc
Q 047503 650 RYLLVYHS 657 (920)
Q Consensus 650 ~~L~l~~~ 657 (920)
++|++++|
T Consensus 134 ~~L~Ls~N 141 (251)
T 3m19_A 134 KELRLNTN 141 (251)
T ss_dssp CEEECCSS
T ss_pred cEEECcCC
Confidence 55555554
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=3.8e-12 Score=146.79 Aligned_cols=177 Identities=18% Similarity=0.177 Sum_probs=111.8
Q ss_pred cCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCccc
Q 047503 602 HLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKL 681 (920)
Q Consensus 602 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L 681 (920)
+|++|++++|.+..+|..+. ++|++|+|++|.++.+| ..+++|++|++++|.+ ..+|. ++. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l------~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL------STLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC------SCCCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC------CCcch-hhc--CCCEE
Confidence 89999999999999998874 89999999999999999 5689999999999743 23555 544 88888
Q ss_pred cccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEecc-C
Q 047503 682 YIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGS-M 760 (920)
Q Consensus 682 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~ 760 (920)
++..+....+.. .+++|+.|+++.|.... ++. .+++|+.|+|++|.+.. ++ .+. .+|+.|+|++| +
T Consensus 126 ~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~-lp--~l~---~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 126 DVDNNQLTMLPE--LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTF-LP--ELP---ESLEALDVSTNLL 192 (571)
T ss_dssp ECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CC--CCC---TTCCEEECCSSCC
T ss_pred ECCCCcCCCCCC--cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCC-cc--hhh---CCCCEEECcCCCC
Confidence 887776322222 45666666666443222 121 34566666666665443 11 121 26666666665 3
Q ss_pred CCCCccccCCCCc-------ceEEEEeeccCCCcccccCCCcccceeEEecccCCC
Q 047503 761 KNLPDWIFKLKNL-------VRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYE 809 (920)
Q Consensus 761 ~~lp~~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~ 809 (920)
..+|. +.. +| +.|+|++|.++. .+..+..+++|+.|+|++|.+..
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred Cchhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence 44554 322 44 666666666553 33334446666666666555443
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=5.6e-12 Score=126.90 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=41.2
Q ss_pred eeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchh-hcccccCCeEeec
Q 047503 579 LMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVY 655 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 655 (920)
+|++|++++|.+..+|. .++.+.+|++|++++|.+..+|.. +..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554443 244555555555555555555443 34555555555555555555433 3455555555555
Q ss_pred cc
Q 047503 656 HS 657 (920)
Q Consensus 656 ~~ 657 (920)
+|
T Consensus 109 ~N 110 (208)
T 2o6s_A 109 TN 110 (208)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 118
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=4.9e-10 Score=124.64 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=181.3
Q ss_pred CccccchhhHHHHHHHHhc----CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVN----GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 245 (920)
+.++||+++++++.+++.. ..+..+.+.|+|.+|+||||||+.+++. ..... ..++|+.++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999999875 2222348999999999999999999885 32221 346778877777888888888
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCc--hhhhHHHHhccCCC----CCcEEEEEccc
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKI--ELWGDVEHALLDNK----KGSRIMLTTRH 317 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~iivTtR~ 317 (920)
+.+++.... ....+...+...+.+.+. +++.+||||+++.. +....+...+.... .+..+|++|+.
T Consensus 95 ~~~l~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 95 ARSLNIPFP------RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHTTCCCC------SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHhCccCC------CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 887743211 122345666777777664 56889999999775 33444544443211 46778888876
Q ss_pred hhhhhhccc----CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHh---------CCchHHHHH
Q 047503 318 KAVADFCKQ----SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKC---------GGLPLAIVA 384 (920)
Q Consensus 318 ~~v~~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c---------~glPlai~~ 384 (920)
......... ......+.+.+++.++..+++.+.+........ --.+....|++.+ +|.|-.+..
T Consensus 169 ~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 169 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS---YSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTS---SCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred chHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 643322111 000136999999999999999887642110011 1235677888889 788754443
Q ss_pred HHhh-hc-----CCC-CChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhccCC---CCceechhh
Q 047503 385 VGGL-LS-----TKH-GSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFP---QGYSISCAR 454 (920)
Q Consensus 385 ~~~~-l~-----~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp---~~~~i~~~~ 454 (920)
+... .. ... -+.+....+....... .+.-.+..||.+.+.++..++.+. .+..+....
T Consensus 246 ~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~------------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~ 313 (389)
T 1fnn_A 246 ILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG------------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGD 313 (389)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC------------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh------------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHH
Confidence 3322 11 111 1233333333322110 111224457778887777777654 222455566
Q ss_pred HHHHHHH----cCCccCCCCCChHHHHHHHHHHHHhcccccccc
Q 047503 455 LIRLWIA----EGFVPYSTRPPSEQLGEEYLSELIDRSLVHVSR 494 (920)
Q Consensus 455 li~~W~a----~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (920)
+...+.. .|.. .-.......++.+|...++|....
T Consensus 314 i~~~~~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 314 AEESYKIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEee
Confidence 6554433 2211 112456778999999999998753
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=2e-10 Score=127.71 Aligned_cols=296 Identities=13% Similarity=0.103 Sum_probs=172.7
Q ss_pred CCccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC---CceEEEEeCCCCCHHHHHHH
Q 047503 170 DDEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF---DCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~~~~~ 244 (920)
++.++||+++++.+.+++... ......+.|+|++|+||||||+.+++. ....+ ..++|+.+....+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 468999999999999998752 234568899999999999999999885 32222 24677776665666667776
Q ss_pred HHHHHhhhccCCccccCCcCCHHHHHHHHHHHhc--CCcEEEEEEcCCCch------hhhHHHHhccC-CCCCcEEEEEc
Q 047503 245 MIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH--DKNYMIVLDDVWKIE------LWGDVEHALLD-NKKGSRIMLTT 315 (920)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTt 315 (920)
++.+++.. .+ ....+..+....+.+.+. +++.+||+|+++... .+..+...+.. ...+..+|+||
T Consensus 97 i~~~l~~~----~~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 97 LLESLDVK----VP--FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HTTTTSCC----CC--SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHhCCC----CC--CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 66655322 11 122345666667777765 358999999997632 23333333322 23356678888
Q ss_pred cchhhhhhcc----cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhC---CchHHH-HHHHh
Q 047503 316 RHKAVADFCK----QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCG---GLPLAI-VAVGG 387 (920)
Q Consensus 316 R~~~v~~~~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~---glPlai-~~~~~ 387 (920)
+......... .......+.+++++.++..+++.+.+.......... .+....|++.++ |.|..+ ..+..
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~ 247 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRV 247 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7664322111 111114799999999999999998653111001122 345566777776 998743 33322
Q ss_pred hhc-----CC-CCChHHHHHHHhccCCCCCCCCchhhHHHHhhhccCCChhhHHHHHhhhccCCC-C-ceechhhHHHHH
Q 047503 388 LLS-----TK-HGSVSEWRRSLEGLGSKLGSDPHLKICSRVLSEGYHDLPHHLKSCLLYFGLFPQ-G-YSISCARLIRLW 459 (920)
Q Consensus 388 ~l~-----~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~-~-~~i~~~~li~~W 459 (920)
... .. .-+.+.+..++... ....+.-.+..+|.+.+..+..++.+.+ + ..+....+.+..
T Consensus 248 a~~~a~~~~~~~i~~~~v~~a~~~~------------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~ 315 (386)
T 2qby_A 248 SGEIAERMKDTKVKEEYVYMAKEEI------------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETY 315 (386)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHH------------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHH
T ss_pred HHHHHHhcCCCccCHHHHHHHHHHH------------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHH
Confidence 211 11 11345555554422 1233455567788887777776664221 1 123333332222
Q ss_pred H----HcCCccCCCCCChHHHHHHHHHHHHhccccccc
Q 047503 460 I----AEGFVPYSTRPPSEQLGEEYLSELIDRSLVHVS 493 (920)
Q Consensus 460 ~----a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~ 493 (920)
. ..| + ..........+++.|...+++...
T Consensus 316 ~~~~~~~g-~----~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 316 LNICKKLG-V----EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHT-C----CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhcC-C----CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 112 1 111235567889999999999764
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=4.5e-11 Score=115.67 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=78.0
Q ss_pred ccCCeeeEEEccCCCCC--cCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccc-cchhhcccccCCe
Q 047503 575 AEFKLMKVLDFEDAPIE--FLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQ-LPVEIKNLKKLRY 651 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~~ 651 (920)
...++|++|++++|.+. .+|..++.+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34577888888888887 7888888888888888888888877 778888888888888888887 6776777888888
Q ss_pred EeecccCCCcccccccccCccCCcccCcccccccc
Q 047503 652 LLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQA 686 (920)
Q Consensus 652 L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~ 686 (920)
|++++|..... ..+..++.+++|++|++..+
T Consensus 100 L~Ls~N~l~~~----~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 100 LNLSGNKLKDI----STLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp EECBSSSCCSS----GGGGGGSSCSCCCEEECCSS
T ss_pred EeccCCccCcc----hhHHHHhcCCCCCEEEeeCC
Confidence 88888632110 11134555555555555444
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=7.1e-11 Score=129.76 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=85.1
Q ss_pred eEEEccCCCCCcCcccccCcccCceeeecCCCccccCcc-cc-CCCCCcEEeecCCcccccch-hhcccccCCeEeeccc
Q 047503 581 KVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKS-IG-RLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHS 657 (920)
Q Consensus 581 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 657 (920)
++++++++.+..+|..+. ..+++|+|++|.+..+|.. +. ++++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888887654 4588899999988888765 44 78899999999888888774 5888899999999886
Q ss_pred CCCcccccccccC-ccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCC
Q 047503 658 DNGTHERGVKIQE-GFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSRE 736 (920)
Q Consensus 658 ~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~ 736 (920)
.+ ..++. .+..+++|++|++..+.. .. ..+..+..+++|+.|+|++|.+.
T Consensus 99 ~l------~~~~~~~~~~l~~L~~L~L~~N~i----------------------~~-~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 99 HL------HTLDEFLFSDLQALEVLLLYNNHI----------------------VV-VDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CC------CEECTTTTTTCTTCCEEECCSSCC----------------------CE-ECTTTTTTCTTCCEEECCSSCCC
T ss_pred cC------CcCCHHHhCCCcCCCEEECCCCcc----------------------cE-ECHHHhCCcccCCEEECCCCcCC
Confidence 32 22332 355555555555544321 10 01223556677777777777544
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=4.5e-11 Score=143.23 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=100.2
Q ss_pred CCeeEEEEecCcccc--ccccCCCCceEEEeeccC--CCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCcee
Q 047503 531 TKTRRISINQSLNNV--LEWTEDSKIRSVFFLNVD--KLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYL 606 (920)
Q Consensus 531 ~~~r~lsl~~~~~~~--~~~~~~~~lrsL~~~~~~--~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 606 (920)
..++++++..+.... ........|+.+.+.... ......++..+..++.|++|+|++|.+..+|..++++.+|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 457777776554311 112233344444333221 1123355677899999999999999999999999999999999
Q ss_pred eecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccccccccCccCCcccCcccccccc
Q 047503 607 SVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQA 686 (920)
Q Consensus 607 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~ 686 (920)
+|++|.+..+|..+++|++|++|+|++|.++.+|..+..|++|++|+|++|. ...+|..|+.+++|++|++..+
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~------l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM------VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC------CCCCCSSTTSCTTCCCEECTTS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC------CCccChhhhcCCCccEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999973 3468888999999999999988
Q ss_pred C
Q 047503 687 N 687 (920)
Q Consensus 687 ~ 687 (920)
.
T Consensus 327 ~ 327 (727)
T 4b8c_D 327 P 327 (727)
T ss_dssp C
T ss_pred c
Confidence 7
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=1.1e-10 Score=119.02 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=67.7
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccCcc-ccCCCCCcEE
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTL 629 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 629 (920)
+.++.|.+.++.. ....+..|..+++|++|+|++|.+..+|. .+..+.+|++|+|++|.+..+|.. +..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 4555555444332 11223445556666666666666665553 245566666666666666655543 3556666666
Q ss_pred eecCCcccccchhhcccccCCeEeecccCCCccccccccc-CccCCcccCcccccccc
Q 047503 630 DLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHERGVKIQ-EGFGSLTDLQKLYIVQA 686 (920)
Q Consensus 630 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~p-~~i~~l~~L~~L~~~~~ 686 (920)
+|++|.++.+|..+..+++|++|++++|.+. .+| ..+..+++|+.|++..+
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLK------SIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECTTS
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCC------ccCHHHHhCCCCCCEEEeeCC
Confidence 6666666666666666666666666654221 222 22444555555554443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2.3e-11 Score=115.10 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=75.8
Q ss_pred cCCeeeEEEccCCCCC--cCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccc-cchhhcccccCCeE
Q 047503 576 EFKLMKVLDFEDAPIE--FLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQ-LPVEIKNLKKLRYL 652 (920)
Q Consensus 576 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L 652 (920)
..++|+.|++++|.+. .+|..++.+++|++|++++|.+..+ ..++++++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4467888888888877 7777777888888888888877777 667778888888888887776 66666778888888
Q ss_pred eecccCCCcccccccccCccCCcccCccccccccC
Q 047503 653 LVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
++++|.... ...+..++.+++|++|++..+.
T Consensus 94 ~ls~N~i~~----~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKD----LSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCS----HHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCC----hHHHHHHhhCCCCCEEeCcCCc
Confidence 887763211 1122456666666666666654
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.14 E-value=1.2e-10 Score=118.09 Aligned_cols=85 Identities=27% Similarity=0.420 Sum_probs=39.2
Q ss_pred hhccCCeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccc-hhhcccccC
Q 047503 573 LVAEFKLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLP-VEIKNLKKL 649 (920)
Q Consensus 573 ~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L 649 (920)
.|..+++|++|+|++|.+..+ |..+.++.+|++|+|++|.+..+|.. +..+++|++|+|++|.++.++ ..+..+++|
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 344444444555544444433 34444444445555544444444433 234444455555444444442 234444444
Q ss_pred CeEeeccc
Q 047503 650 RYLLVYHS 657 (920)
Q Consensus 650 ~~L~l~~~ 657 (920)
++|++++|
T Consensus 131 ~~L~L~~N 138 (220)
T 2v9t_B 131 NLLSLYDN 138 (220)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 44444443
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=117.86 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=60.5
Q ss_pred eeEEEccCCCCCcCc--ccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccchh-hcccccCCeEeec
Q 047503 580 MKVLDFEDAPIEFLP--EEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVY 655 (920)
Q Consensus 580 Lr~L~L~~~~~~~lp--~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 655 (920)
+++|+|++|.+..++ ..++.+++|++|+|++|.+..+|. .+.++++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 445555555555442 224555555555555555554443 455555555555555555544432 4555555555555
Q ss_pred ccCCCcccccccccCccCCcccCccccccccC--chhHHhcccCCCCcEEEEE
Q 047503 656 HSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN--STILKELRKLRQLRKLGIQ 706 (920)
Q Consensus 656 ~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~ 706 (920)
+|.+ ....|..+..+++|++|++..+. ...+..+..+++|+.|+++
T Consensus 114 ~N~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 114 SNRI-----TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TSCC-----CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCcC-----CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 5421 11223344555555555555544 1123345555566666655
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=7.8e-11 Score=113.94 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=94.4
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccc-cCccccCCCCCcEEe
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKV-LPKSIGRLLNLQTLD 630 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~ 630 (920)
++++.|.+.++.. ....++..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l-~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKS-NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBC-BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCC-ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4555555544432 1112344567888899999999988877 778888999999999998887 777777789999999
Q ss_pred ecCCcccccc--hhhcccccCCeEeecccCCCcccccccccC----ccCCcccCccccccccC
Q 047503 631 LKHSLVTQLP--VEIKNLKKLRYLLVYHSDNGTHERGVKIQE----GFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 631 L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~----~i~~l~~L~~L~~~~~~ 687 (920)
+++|.++.+| ..+..+++|++|++++|. ....|. .+..+++|++|++..+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~------l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE------VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG------GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc------CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999888876 678889999999998863 223443 56677788887777665
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=5.3e-10 Score=115.45 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=118.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
.+++||+..++.+..++.... ..+.+.|+|.+|+||||||+.+++.......+. .+ ... .... . ..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~--~~-~~~---~~~~-~----~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--AT-PCG---VCDN-C----REIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC--SS-CCS---CSHH-H----HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC-CCc---ccHH-H----HHHh
Confidence 468999999999999997754 235889999999999999999987522111110 00 000 0000 0 0111
Q ss_pred hhccCCcc-ccCC-cCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchhhh
Q 047503 251 QLTGQSAL-GEMN-NMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKAVA 321 (920)
Q Consensus 251 ~~~~~~~~-~~~~-~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 321 (920)
........ .... ....+.+ ..+.+.+ .+++.+||+||++.. +.++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000000 0000 0111111 1222222 346799999999764 46677777666656678888888765322
Q ss_pred -hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhh
Q 047503 322 -DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLL 389 (920)
Q Consensus 322 -~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l 389 (920)
...... ...+.+++++.++..+++.+.+..... .. -.+....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r--~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSR--CLQFHLKALDVEQIRHQLEHILNEEHI--AH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHTTC--CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHH--hhhccCCCCCHHHHHHHHHHHHHhcCC--CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111111 267999999999999999987754321 11 13567789999999999888776544
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.14 E-value=6.6e-11 Score=119.95 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=59.3
Q ss_pred CeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCcccc-CccccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
+.|+.|++++|.+..+|. .+..+.+|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456666666666665543 456666666666666666655 45566666666666666666666554 455666666666
Q ss_pred cccCCCcccccccccCccCCcccCccccccccC
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
++|.+ ....|..++.+++|++|++..+.
T Consensus 112 ~~N~l-----~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 112 NANKI-----NCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CSSCC-----CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC-----CEeCHHHcCCCCCCCEEECCCCc
Confidence 66522 11123334445555555544443
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=5.5e-11 Score=120.55 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=103.0
Q ss_pred eEEEccCCCCCcCcccccCcccCceeeecCCCccccCc--cccCCCCCcEEeecCCcccccch-hhcccccCCeEeeccc
Q 047503 581 KVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK--SIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHS 657 (920)
Q Consensus 581 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 657 (920)
+.++++++.++.+|..+. ..+++|+|++|.+..++. .+.++++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 589999999999998764 457899999999998843 47899999999999999998876 6999999999999997
Q ss_pred CCCcccccccccCccCCcccCccccccccCc--hhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQANS--TILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTS 734 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 734 (920)
.+. ...+..++.+++|++|++..+.. ..+..+..+++|+.|+++.+.... ..+..+..+++|+.|++++|.
T Consensus 92 ~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLE-----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCC-----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCC
T ss_pred ccC-----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcC
Confidence 432 22233477888888888877762 223445555666666555332221 112334455555555555554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=6.8e-11 Score=115.30 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=61.1
Q ss_pred ccCCeeeEEEccCCCCCcCcccccCcc-cCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhh-cccccCCeE
Q 047503 575 AEFKLMKVLDFEDAPIEFLPEEVGNLF-HLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEI-KNLKKLRYL 652 (920)
Q Consensus 575 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L 652 (920)
..+.+|++|++++|.+..+|. +..+. +|++|++++|.+..+ ..+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 455666666666666665543 33443 666666666666665 45666666666666666666666443 666666666
Q ss_pred eecccCCCcccccccccC--ccCCcccCccccccccC
Q 047503 653 LVYHSDNGTHERGVKIQE--GFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 653 ~l~~~~~~~~~~~~~~p~--~i~~l~~L~~L~~~~~~ 687 (920)
++++|.. ..+|. .++.+++|+.|++.++.
T Consensus 94 ~L~~N~i------~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 94 ILTNNSL------VELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp ECCSCCC------CCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ECCCCcC------CcchhhHhhhcCCCCCEEEecCCC
Confidence 6666532 12232 34455555555555443
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=1.1e-10 Score=119.30 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=71.3
Q ss_pred CeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
++|++|+|++|.+..+ |..++.+.+|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6677777777777755 55677777777777777777777654 46777777777777777777654 567777777777
Q ss_pred cccCCCcccccccccCccCCcccCccccccccC
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
++|. ...+|..+..+++|++|++..+.
T Consensus 120 s~N~------l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 120 CCNK------LTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CSSC------CCSCCTTGGGCTTCSEEECCSSC
T ss_pred cCCc------ccccCcccccCCCCCEEECCCCc
Confidence 7753 22455556666666666655544
No 133
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.09 E-value=3.7e-10 Score=113.41 Aligned_cols=128 Identities=21% Similarity=0.374 Sum_probs=98.2
Q ss_pred CCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCccc-ccCcccCceeeecCCCccccCcc-ccCCCCCcE
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEE-VGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQT 628 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 628 (920)
.++++.|.+.++.. ....+..|..+++|++|++++|.+..+|.. +..+.+|++|++++|.+..+|.. +.++++|++
T Consensus 27 ~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 45677777766543 234455678899999999999999988754 68899999999999999988865 688999999
Q ss_pred EeecCCcccccchh-hcccccCCeEeecccCCCcccccccccCc-cCCcccCcccccccc
Q 047503 629 LDLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQA 686 (920)
Q Consensus 629 L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 686 (920)
|++++|.++.+|.. +..+++|++|++++|.+ ..++.. +..+++|+.|++..+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l------~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL------KSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------SCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcc------ceeCHHHhccCCCccEEEecCC
Confidence 99999999988765 68899999999998732 223332 556666666665544
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=7.6e-11 Score=111.48 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=95.5
Q ss_pred CCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccc-cCccccCCCCCcEEe
Q 047503 552 SKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKV-LPKSIGRLLNLQTLD 630 (920)
Q Consensus 552 ~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~ 630 (920)
++++.|.+.++.. .....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4455555544432 1113344568889999999999999877 778899999999999999997 787788899999999
Q ss_pred ecCCcccccc--hhhcccccCCeEeecccCCCcccccccccC----ccCCcccCcccccc
Q 047503 631 LKHSLVTQLP--VEIKNLKKLRYLLVYHSDNGTHERGVKIQE----GFGSLTDLQKLYIV 684 (920)
Q Consensus 631 L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~----~i~~l~~L~~L~~~ 684 (920)
+++|.++.+| ..+..+++|++|++++|.. ...|. .++.+++|+.|++.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l------~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEV------TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGG------GGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcc------cchHHHHHHHHHHCCCcccccCC
Confidence 9999999875 7799999999999998732 23333 46677777777654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1.7e-10 Score=112.52 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=100.4
Q ss_pred cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccc-cCCCCCc
Q 047503 549 TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSI-GRLLNLQ 627 (920)
Q Consensus 549 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~ 627 (920)
..+++++.|.+.++... .++.+...+++|++|++++|.+..+ ..++.+++|++|++++|.+..+|..+ ..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~---~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC---SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc---hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34566666666555332 1233334445999999999999977 67899999999999999999998776 8999999
Q ss_pred EEeecCCcccccch--hhcccccCCeEeecccCCCcccccccccCc----cCCcccCccccccccC
Q 047503 628 TLDLKHSLVTQLPV--EIKNLKKLRYLLVYHSDNGTHERGVKIQEG----FGSLTDLQKLYIVQAN 687 (920)
Q Consensus 628 ~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~----i~~l~~L~~L~~~~~~ 687 (920)
+|++++|.++.+|. .+..+++|++|++++|. ...+|.. ++.+++|+.|++..+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~------i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP------VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG------GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC------CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999987 78999999999999973 2344543 6677777777777665
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2.2e-10 Score=132.85 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=63.8
Q ss_pred eeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCC
Q 047503 580 MKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDN 659 (920)
Q Consensus 580 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 659 (920)
|++|+|++|.++.+|. ++.+.+|++|+|++|.+..+|..++++++|++|+|++|.++.+| .++.+++|++|++++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 6666666666666665 66666666666666666666666666666666666666666666 566666666666666522
Q ss_pred Ccccccccc-cCccCCcccCccccccccC
Q 047503 660 GTHERGVKI-QEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 660 ~~~~~~~~~-p~~i~~l~~L~~L~~~~~~ 687 (920)
. ... |..++.+++|++|++..+.
T Consensus 521 ~-----~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 521 Q-----QSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-----SSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-----CCCCcHHHhcCCCCCEEEecCCc
Confidence 1 111 5556666666666665554
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.03 E-value=3.6e-09 Score=107.39 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=114.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+++|+++.++.+.+++.... ...+.|+|.+|+|||++|+.+++... ...+. ..+.+..+....... +...+..+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV-VRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHH-HHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHH-HHHHHHHH
Confidence 468999999999999998764 33489999999999999999987421 11121 233333333222221 11111111
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchhh-hhhccc
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKAV-ADFCKQ 326 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~~ 326 (920)
.... ..-.+++.+||+||++.. +.++.+...+.....+.++|+||+.... ......
T Consensus 93 ~~~~---------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 93 ARTA---------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp HTSC---------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred hccc---------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence 1100 001257899999999875 3455565555555567888888876532 111111
Q ss_pred CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 327 SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
. ...+.+.+++.++..+++.+.+..... .. -.+....|++.++|.|..+..+.
T Consensus 152 r--~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 152 R--CAVFRFKPVPKEAMKKRLLEICEKEGV--KI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp T--SEEEECCCCCHHHHHHHHHHHHHHHTC--CB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred h--CceeecCCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 157899999999999999887643211 11 13566788899999998654443
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=4.5e-11 Score=143.26 Aligned_cols=184 Identities=19% Similarity=0.180 Sum_probs=107.1
Q ss_pred ccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeecccCCCcccc
Q 047503 585 FEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHSDNGTHER 664 (920)
Q Consensus 585 L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 664 (920)
++.+.+...|..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.++.+|..+..|++|++|+|++|.
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~------ 281 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR------ 281 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC------
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc------
Confidence 33344444577889999999999999999999999999999999999999999999999999999999999973
Q ss_pred cccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCC-CCCEEEEeeCCCCcccccc
Q 047503 665 GVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADME-NLESLTVESTSREETFDIQ 742 (920)
Q Consensus 665 ~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~-~L~~L~L~~~~~~~~~~l~ 742 (920)
...+|..++.+++|++|++..+. ...+..++.+++|+.|+++.|.... ..+..+..+. .+..|+|.+|.....
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~---- 356 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIP---- 356 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCC----
T ss_pred CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCc----
Confidence 23678899999999999999887 4455668899999999998655443 2333333221 111244555544321
Q ss_pred cCCCCcccccEEEEecc------CCCCC----ccccCCCCcceEEEEeecc
Q 047503 743 SLGSPPQYLEHLYLVGS------MKNLP----DWIFKLKNLVRIGLYWSEL 783 (920)
Q Consensus 743 ~l~~~~~~L~~L~L~~~------~~~lp----~~~~~l~~L~~L~L~~~~l 783 (920)
.|..|+.|.++.+ .+.+| ..+..+..+....+++|.+
T Consensus 357 ----~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 357 ----LPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ----CCCC-----------------------------------------CC
T ss_pred ----CccccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 2235666666543 12222 2233444555556666654
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=2.5e-10 Score=125.37 Aligned_cols=124 Identities=26% Similarity=0.362 Sum_probs=68.1
Q ss_pred eeeEEEccCCCCCcCccc-cc-CcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccch-hhcccccCCeEee
Q 047503 579 LMKVLDFEDAPIEFLPEE-VG-NLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLV 654 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~-i~-~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l 654 (920)
.+++|+|++|.+..++.. +. ++.+|++|+|++|.+..+|. .+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 356666666666655433 33 56666666666666666553 46666666666666666666554 3566666666666
Q ss_pred cccCCCcccccccccCccCCcccCccccccccCc-hhHHh-c---ccCCCCcEEEEEe
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANS-TILKE-L---RKLRQLRKLGIQL 707 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~-~~~~~-l---~~l~~L~~L~l~~ 707 (920)
++|.+ ....|..+..+++|+.|++..+.. ..+.. + ..+++|+.|+++.
T Consensus 120 ~~N~i-----~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 120 YNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CSSCC-----CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred CCCcc-----cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 66522 112234455666666666655541 11111 1 3455555555553
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=5.8e-10 Score=110.32 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=58.4
Q ss_pred eEEEccCCCCCcCcccccCcccCceeeecCCCccccCcc--ccCCCCCcEEeecCCccccc-chhhcccccCCeEeeccc
Q 047503 581 KVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKS--IGRLLNLQTLDLKHSLVTQL-PVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 581 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~ 657 (920)
++|+++++.+..+|..+.. +|++|++++|.+..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5566666666666655533 666666666666666543 56666666666666666655 445666666666666665
Q ss_pred CCCcccccccccCccCCcccCccccccccC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
.+ ....+..++.+++|++|++..+.
T Consensus 89 ~l-----~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 89 KI-----KEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp CC-----CEECSSSSTTCTTCCEEECCSSC
T ss_pred cC-----CccCHHHhcCCCCCCEEECCCCc
Confidence 22 11122235555555555555443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.1e-09 Score=118.59 Aligned_cols=279 Identities=14% Similarity=0.120 Sum_probs=160.0
Q ss_pred CCCceEEEeeccCCCCcchhhhhhcc-CCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccC------
Q 047503 551 DSKIRSVFFLNVDKLPGSFMTKLVAE-FKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGR------ 622 (920)
Q Consensus 551 ~~~lrsL~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~------ 622 (920)
+..+..|.+.+.-. ...+.. +.. +++|++|||++|.+......-+.+..++++.+..+ .+|. .+.+
T Consensus 24 ~~~l~~L~l~g~i~--~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLN--AEDFRH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEEC--HHHHHH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEE
T ss_pred hCceeEEEEecccc--HHHHHH-HHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccc
Confidence 45666777665321 112222 333 78899999999988722212223334566666655 3443 3456
Q ss_pred --CCCCcEEeecCCcccccch-hhcccccCCeEeecccCCCccccccccc-CccCCcccCccccccccCc------hhHH
Q 047503 623 --LLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQ-EGFGSLTDLQKLYIVQANS------TILK 692 (920)
Q Consensus 623 --L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~------~~~~ 692 (920)
+++|+.|+|.+ .++.++. .+..|++|+.|++.+|.. ..++ ..+..+.++..+....... ....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i------~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA------PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC------CEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc------cccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999988 7888876 488899999999988632 1222 2244444454444322110 0011
Q ss_pred hcccCCCCc-EEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCC--CCccccC
Q 047503 693 ELRKLRQLR-KLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKN--LPDWIFK 769 (920)
Q Consensus 693 ~l~~l~~L~-~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--lp~~~~~ 769 (920)
.+..+..|+ .+.+.... .++..+.. ....+.++..+.+.+.... +......
T Consensus 171 ~f~~~~~L~~~i~~~~~~----~l~~~~~~----------------------~~~~~~~~~~l~~~~~l~~~~~~~l~~~ 224 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG----KLEDEIMK----------------------AGLQPRDINFLTIEGKLDNADFKLIRDY 224 (329)
T ss_dssp CEEESCCCEEEEEECTTC----CHHHHHHH----------------------TTCCGGGCSEEEEEECCCHHHHHHHHHH
T ss_pred ccccccccceeEEecCCC----cHHHHHhh----------------------cccCccccceEEEeeeecHHHHHHHHHh
Confidence 123333443 22221000 11111110 0001124555555543211 0111123
Q ss_pred CCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee-EccCCccccc-eeeeccCCCCceee-EcCCCCcccc
Q 047503 770 LKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH-FKDGWFPRLQ-RLVLLDLKGVTLMM-IDKGAMPCLR 846 (920)
Q Consensus 770 l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~~~~L~ 846 (920)
+++|+.|+|++|.++..+...+.++++|+.|+|.++ ...++ ..+.++++|+ .|.+.+ .++.+. ..+..|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 688888888888777767778888999999998876 22332 2345677787 888876 556664 3456789999
Q ss_pred EEEEecCCCCCccCc-ccCCCCCCCEEE
Q 047503 847 ELKIGPCPLLKEIPA-GIEHLRNLEILK 873 (920)
Q Consensus 847 ~L~l~~c~~l~~lp~-~l~~l~~L~~L~ 873 (920)
.|++.++. ++.++. .+.+|++|+.|.
T Consensus 301 ~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 99998776 666654 688999999885
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=2.5e-11 Score=121.02 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=57.7
Q ss_pred hhhccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCe
Q 047503 572 KLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRY 651 (920)
Q Consensus 572 ~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 651 (920)
..+..+++|++|++++|.+..+| .++.+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 35566677777777777766666 666677777777777777677666666677777777777666665 4666777777
Q ss_pred Eeeccc
Q 047503 652 LLVYHS 657 (920)
Q Consensus 652 L~l~~~ 657 (920)
|++++|
T Consensus 120 L~l~~N 125 (198)
T 1ds9_A 120 LYMSNN 125 (198)
T ss_dssp EEESEE
T ss_pred EECCCC
Confidence 777665
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=1.5e-09 Score=107.23 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=37.8
Q ss_pred eeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccch-hhcccccCCeEeecc
Q 047503 579 LMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYH 656 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 656 (920)
.|++|+|++|.+..+|..+.++.+|++|+|++|.+..++. .+.++++|++|+|++|.++.+|. .+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4445555555544444444445555555555554444432 24445555555555554444433 244445555555544
Q ss_pred c
Q 047503 657 S 657 (920)
Q Consensus 657 ~ 657 (920)
|
T Consensus 112 N 112 (193)
T 2wfh_A 112 N 112 (193)
T ss_dssp S
T ss_pred C
Confidence 3
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=1.5e-09 Score=107.34 Aligned_cols=104 Identities=18% Similarity=0.320 Sum_probs=72.3
Q ss_pred eeeEEEccCCCCCcCccc--ccCcccCceeeecCCCcccc-CccccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 579 LMKVLDFEDAPIEFLPEE--VGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 579 ~Lr~L~L~~~~~~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
.|++|++++|.+..++.. ++.+.+|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677778887777766543 77777788888887777766 56677777888888877777766544 677777888888
Q ss_pred cccCCCcccccccccCccCCcccCccccccccC
Q 047503 655 YHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
++|.+ ....|..++.+++|++|++..+.
T Consensus 110 ~~N~l-----~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQI-----SCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCC-----CEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcC-----CeeCHHHhhcCCCCCEEEeCCCC
Confidence 77632 22335556666677766665554
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.93 E-value=2.5e-09 Score=105.74 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=74.4
Q ss_pred eEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccch-hhcccccCCeEeecccCC
Q 047503 581 KVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDN 659 (920)
Q Consensus 581 r~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 659 (920)
++++++++.+..+|..+. .+|++|++++|.+..+|..+.++++|++|+|++|.++.++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456677777666665543 46777777777777777667777777777777777766654 366677777777776532
Q ss_pred CcccccccccCccCCcccCccccccccCch-h-HHhcccCCCCcEEEEEe
Q 047503 660 GTHERGVKIQEGFGSLTDLQKLYIVQANST-I-LKELRKLRQLRKLGIQL 707 (920)
Q Consensus 660 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~-~-~~~l~~l~~L~~L~l~~ 707 (920)
. ...|..++.+++|++|++..+... . ...+..+++|+.|+++.
T Consensus 91 ~-----~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 R-----CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp C-----BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred C-----EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 1 122334666677777776666522 2 22355666777776663
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.3e-09 Score=126.29 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=80.3
Q ss_pred hccCCeeeEEEccCCCCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCccccc--chhhcccccCCe
Q 047503 574 VAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQL--PVEIKNLKKLRY 651 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l--p~~i~~l~~L~~ 651 (920)
+..+++|++|+|++|.+..+|..++.+++|++|+|++|.++.+| .++++++|++|+|++|.++.+ |..+..|++|++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 78899999999999999999999999999999999999999999 899999999999999999988 889999999999
Q ss_pred EeecccC
Q 047503 652 LLVYHSD 658 (920)
Q Consensus 652 L~l~~~~ 658 (920)
|++++|.
T Consensus 538 L~L~~N~ 544 (567)
T 1dce_A 538 LNLQGNS 544 (567)
T ss_dssp EECTTSG
T ss_pred EEecCCc
Confidence 9999973
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=4.1e-11 Score=119.37 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=105.1
Q ss_pred eeEEEccCC--CCCcCcccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCcccccchhhcccccCCeEeeccc
Q 047503 580 MKVLDFEDA--PIEFLPEEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 580 Lr~L~L~~~--~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 657 (920)
|+.+.+.++ .++.+|..++.+++|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 344444443 34566668999999999999999999999 899999999999999999999988888999999999997
Q ss_pred CCCcccccccccCccCCcccCccccccccCch---hHHhcccCCCCcEEEEEecCCcc---------hhHHHHhccCCCC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQANST---ILKELRKLRQLRKLGIQLTNDDG---------KNLCASIADMENL 725 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~---------~~l~~~l~~~~~L 725 (920)
.. ..+| .++.+++|++|++..+... .+..+..+++|+.|+++.+.... ......+..+++|
T Consensus 104 ~l------~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 104 QI------ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EC------CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred cC------CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 33 2344 5778888888888877632 22457788888888887442211 1112235667778
Q ss_pred CEEE
Q 047503 726 ESLT 729 (920)
Q Consensus 726 ~~L~ 729 (920)
+.|+
T Consensus 177 ~~Ld 180 (198)
T 1ds9_A 177 KKLD 180 (198)
T ss_dssp SEEC
T ss_pred EEEC
Confidence 8775
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.9e-08 Score=108.49 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=116.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++... ...+ ..++++..+..... +.+++++..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHHHHHH
Confidence 468999999999999998765 23388999999999999999987511 1111 12334433332222 2223333322
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hhhhcc
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VADFCK 325 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~ 325 (920)
.... ..+ .+++.++|+||++.. +.++.+...+.....++.+|+||.... +.....
T Consensus 97 ~~~~---------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 97 AQKK---------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HHBC---------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred Hhcc---------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 2100 001 356899999999875 345556555555556778888886643 211111
Q ss_pred cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHhh
Q 047503 326 QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGGL 388 (920)
Q Consensus 326 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~~ 388 (920)
.. ...+.+.+++.++..+++.+.+..... .. -.+....|++.|+|.|. |+..+...
T Consensus 156 sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 156 SQ--CAILRYSKLSDEDVLKRLLQIIKLEDV--KY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp TT--SEEEECCCCCHHHHHHHHHHHHHHHTC--CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh--ceEEeecCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 258999999999999999887643211 11 13566789999999995 45555443
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.84 E-value=8.7e-09 Score=100.35 Aligned_cols=104 Identities=25% Similarity=0.420 Sum_probs=56.2
Q ss_pred CeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
++|++|++++|.+..+|. .++.+.+|++|++++|.+..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 355666666666555443 245556666666666666555543 35566666666666655555543 455666666666
Q ss_pred cccCCCcccccccccCc-cCCcccCccccccccC
Q 047503 655 YHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQAN 687 (920)
Q Consensus 655 ~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~ 687 (920)
++|.+ ..+|.. +..+++|++|++..+.
T Consensus 108 ~~N~l------~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQL------KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCC------SCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcc------eEeCHHHhcCCcccCEEEecCCC
Confidence 55422 123332 3455566666555544
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.82 E-value=1.6e-08 Score=109.12 Aligned_cols=275 Identities=17% Similarity=0.072 Sum_probs=143.1
Q ss_pred CccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++++|++..++.+..++... ......+.|+|.+|+|||++|+.+++. ... ..+++..+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~--------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKP--------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSH---------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCCh---------
Confidence 57999999999988887631 122457889999999999999999874 222 2234433222111
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCC------------------CC
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDN------------------KK 307 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~ 307 (920)
.++...+...+ .+..+|++|+++... ....+...+... ..
T Consensus 78 -------------------~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 78 -------------------GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -------------------HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -------------------HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 11111111111 355688899997653 333333332211 02
Q ss_pred CcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 308 GSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 308 gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
+..+|.||.... +...... .....+.+.+++.++..+++.+.+..... .. -.+....|++.++|.|-.+..+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~-R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~---~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS-RFGIVEHLEYYTPEELAQGVMRDARLLGV--RI---TEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT-TCSCEEECCCCCHHHHHHHHHHHHHTTTC--CC---CHHHHHHHHHHSCSCHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh-cccEEEecCCCCHHHHHHHHHHHHHhcCC--CC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 345666666442 2111111 11257899999999999999887654321 11 13567888999999998776665
Q ss_pred hhhcCC-------CCChHHHHHHHhccCCCCCCCCc-hhhHHHHhhhccCCChhhHHHHHhhhccCCCCceechhhH---
Q 047503 387 GLLSTK-------HGSVSEWRRSLEGLGSKLGSDPH-LKICSRVLSEGYHDLPHHLKSCLLYFGLFPQGYSISCARL--- 455 (920)
Q Consensus 387 ~~l~~~-------~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~~sy~~L~~~lk~cfl~~a~fp~~~~i~~~~l--- 455 (920)
..+... .-+.+....++............ ...+...+.-.|..=|......-..+++ .+..+
T Consensus 212 ~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~ 284 (324)
T 1hqc_A 212 RRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEV 284 (324)
T ss_dssp HHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHH
Confidence 543211 11234444444332211110000 0111111111222212122222222222 22222
Q ss_pred -HHHHHHcCCccC-CCCCChHHHHHHHHH-HHHhcccccc
Q 047503 456 -IRLWIAEGFVPY-STRPPSEQLGEEYLS-ELIDRSLVHV 492 (920)
Q Consensus 456 -i~~W~a~g~i~~-~~~~~~e~~~~~~l~-~L~~~sll~~ 492 (920)
-++-+..|++.. ..+....+.|..||+ ++.+|++||+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 223456788853 456677888999997 8999999885
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=1.1e-08 Score=98.71 Aligned_cols=100 Identities=21% Similarity=0.364 Sum_probs=63.4
Q ss_pred eeEEEccCCCCCcCcccccCcccCceeeecCCCcccc-CccccCCCCCcEEeecCCcccccchh-hcccccCCeEeeccc
Q 047503 580 MKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVYHS 657 (920)
Q Consensus 580 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 657 (920)
.++|+++++.+..+|..+ ..+|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456777777777777655 36677777777777766 44566777777777777777766654 466777777777765
Q ss_pred CCCcccccccccC-ccCCcccCccccccccC
Q 047503 658 DNGTHERGVKIQE-GFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 658 ~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~ 687 (920)
.+ ..+|. .++.+++|++|++..+.
T Consensus 89 ~l------~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QL------KSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CC------CCCCTTTTTTCTTCCEEECCSSC
T ss_pred cc------CEeCHHHhcCCCCCCEEEeCCCC
Confidence 32 22333 25556666666655543
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=1.2e-08 Score=98.81 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=37.9
Q ss_pred CeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
++|++|+|++|.+..+ |..++++.+|++|+|++|.+..+|.. +.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 3444555555544433 23444445555555555544444443 24445555555555544444443 444455555555
Q ss_pred ccc
Q 047503 655 YHS 657 (920)
Q Consensus 655 ~~~ 657 (920)
++|
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=1.5e-08 Score=98.15 Aligned_cols=100 Identities=21% Similarity=0.378 Sum_probs=86.4
Q ss_pred eeEEEccCCCCCcCcccccCcccCceeeecCCCcccc-CccccCCCCCcEEeecCCcccccchh-hcccccCCeEeeccc
Q 047503 580 MKVLDFEDAPIEFLPEEVGNLFHLHYLSVRNTKVKVL-PKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVYHS 657 (920)
Q Consensus 580 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 657 (920)
-+.++++++.+..+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999998774 8999999999999988 56788999999999999999999876 589999999999997
Q ss_pred CCCcccccccccCc-cCCcccCccccccccC
Q 047503 658 DNGTHERGVKIQEG-FGSLTDLQKLYIVQAN 687 (920)
Q Consensus 658 ~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~ 687 (920)
.+ ..+|.. ++.+++|++|++..+.
T Consensus 92 ~l------~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HL------KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CC------CCCCTTTTTTCTTCSEEECCSSC
T ss_pred cc------ceeCHHHhccccCCCEEEeCCCC
Confidence 43 345554 8899999999998887
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.70 E-value=2.8e-08 Score=96.73 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEc-CCCCccccEEE
Q 047503 771 KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMID-KGAMPCLRELK 849 (920)
Q Consensus 771 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~ 849 (920)
++|+.|+|++|.+.......++.+++|+.|+|++|.+....+.....+++|+.|++.++. ++.++.. .+.+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 566777777776665555556667777777777665543222223556777777777653 3444332 35677888888
Q ss_pred EecCCCCCccCcc-cCCCCCCCEEEEecCh
Q 047503 850 IGPCPLLKEIPAG-IEHLRNLEILKFCGML 878 (920)
Q Consensus 850 l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 878 (920)
+++|. ++.+|.. +..+++|++|++++++
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 88775 4556654 4677888888888765
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=4.4e-08 Score=94.51 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=74.9
Q ss_pred CeeeEEEccCCCCCcC-cccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccchh-hcccccCCeEee
Q 047503 578 KLMKVLDFEDAPIEFL-PEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLV 654 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 654 (920)
++|++|+|++|.+..+ |..++.+.+|++|+|++|.+..+|.. +.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 7899999999999977 57799999999999999999999876 57999999999999999999875 889999999999
Q ss_pred cccCCC
Q 047503 655 YHSDNG 660 (920)
Q Consensus 655 ~~~~~~ 660 (920)
++|...
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 998543
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.6e-07 Score=101.37 Aligned_cols=187 Identities=15% Similarity=0.122 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHF-DCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
++++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++... ...+ ...+.+..+.... .+.+++.+..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERG-INVIREKVKEF 100 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHH-HHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCc-hHHHHHHHHHH
Confidence 468999999999999998764 33489999999999999999987511 1111 1123333222100 01111111111
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchhh-hhhccc
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKAV-ADFCKQ 326 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~~ 326 (920)
... .....+++.++|+||++.. +.+..+...+.....++++|+||..... ......
T Consensus 101 ~~~---------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 101 ART---------------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HHS---------------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred Hhh---------------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 100 0001256889999999875 4556666666555567888888876432 111111
Q ss_pred CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHhhh
Q 047503 327 SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGGLL 389 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~~l 389 (920)
. ...+.+.+++.++..+++.+.+..... .--.+....|++.++|.|..+..+...+
T Consensus 160 r--~~~~~~~~l~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 R--CAIFRFRPLRDEDIAKRLRYIAENEGL-----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp T--EEEEECCCCCHHHHHHHHHHHHHTTTC-----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h--CcEEEecCCCHHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1 157899999999999999887643221 1123567788899999998655544433
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=4.7e-07 Score=100.13 Aligned_cols=245 Identities=9% Similarity=0.061 Sum_probs=131.3
Q ss_pred hhhhhhccCCeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccchhhccc
Q 047503 569 FMTKLVAEFKLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPVEIKNL 646 (920)
Q Consensus 569 ~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~i~~l 646 (920)
+....|.++ +|+.+.+..+ +..++. .+.+ ..|+.+.+.. .+..++ ..+.+|.+|+.+++.+|.++.+|...-.+
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 334556665 6888888765 665543 3444 4688888876 566665 45778889999999888888888765557
Q ss_pred ccCCeEeecccCCCcccccccccC-ccCCcccCccccccccC-chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCC
Q 047503 647 KKLRYLLVYHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMEN 724 (920)
Q Consensus 647 ~~L~~L~l~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~ 724 (920)
.+|+.+.+..+ ...++. .+..+++|+.+.+...- .-....+.. .+|+.+.+..+ ... .-...+..+++
T Consensus 203 ~~L~~l~lp~~-------l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~-I~~~aF~~c~~ 272 (401)
T 4fdw_A 203 AGIEEVLLPVT-------LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG-VTN-IASRAFYYCPE 272 (401)
T ss_dssp CCCSEEECCTT-------CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT-CCE-ECTTTTTTCTT
T ss_pred cccCEEEeCCc-------hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC-ccE-EChhHhhCCCC
Confidence 88888888753 223332 35667777777654321 111111222 34555544310 000 00122344555
Q ss_pred CCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCC-CccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEe
Q 047503 725 LESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNL-PDWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLR 803 (920)
Q Consensus 725 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~ 803 (920)
|+.+.+.++..... .+ ..+ +..|..|++|+.+.|.+ .+.......+.++++|+.|.|.
T Consensus 273 L~~l~l~~~~~~~~-----------~~---------~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 273 LAEVTTYGSTFNDD-----------PE---------AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CCEEEEESSCCCCC-----------TT---------CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred CCEEEeCCccccCC-----------cc---------cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 55555544322100 00 001 23455667777777763 2444444566677777777775
Q ss_pred cccCCCeee-EccCCccccceeeeccCCCCceee-EcCCCCc-cccEEEEec
Q 047503 804 DAYDYEKLH-FKDGWFPRLQRLVLLDLKGVTLMM-IDKGAMP-CLRELKIGP 852 (920)
Q Consensus 804 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~-~L~~L~l~~ 852 (920)
.+ ...+. ..+.++ +|+.|.+.++. +..+. ..+..++ +++.|.+..
T Consensus 332 ~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 332 AN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred cc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 43 11221 123345 67777776653 22222 1223343 566666654
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.1e-07 Score=102.84 Aligned_cols=199 Identities=16% Similarity=0.106 Sum_probs=99.4
Q ss_pred cccCceeeecCCCccccCcc-ccCCCCCcEEeecCCcccccch-hhcccccCCeEeecccCCCccccccccc-CccCCcc
Q 047503 600 LFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQ-EGFGSLT 676 (920)
Q Consensus 600 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p-~~i~~l~ 676 (920)
+.+|+.|.|.. .++.++.. +..|++|+.|++.+|.+..++. .+..+.++.++........ .....+. ..+..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--RFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--HTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--hcccccccccccccc
Confidence 78888888888 77777654 7788888888888887776665 3566666665554431000 0000011 1122334
Q ss_pred cCc-cccccccC---chhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCccccc
Q 047503 677 DLQ-KLYIVQAN---STILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLE 752 (920)
Q Consensus 677 ~L~-~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 752 (920)
+|+ ++.+.... ......-....++..+.+... ............+++|++|+|..|.... ++-..+..+. +|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~-~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKK-YLL 253 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCT-TCC
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCC-CCC
Confidence 444 22222211 111111123456666666522 1222233223347888888888765432 2223333344 566
Q ss_pred EEEEeccCCCCC-ccccCCCCcc-eEEEEeeccCCCcccccCCCcccceeEEecc
Q 047503 753 HLYLVGSMKNLP-DWIFKLKNLV-RIGLYWSELTNDPMNVLQALPNLLELRLRDA 805 (920)
Q Consensus 753 ~L~L~~~~~~lp-~~~~~l~~L~-~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~ 805 (920)
+|.|..+...++ ..|.+|++|+ .|.|.+ .++......+.++++|+.|+|.++
T Consensus 254 ~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 254 KIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 666555443332 2345555555 555555 333333444555555555555443
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=1.3e-08 Score=110.57 Aligned_cols=127 Identities=19% Similarity=0.343 Sum_probs=87.1
Q ss_pred cccEEEEeccC-CCCCccccCCCCcceEEEEeeccCCCcccccC--CCcccceeEEec---ccCCCe-e-----eEccCC
Q 047503 750 YLEHLYLVGSM-KNLPDWIFKLKNLVRIGLYWSELTNDPMNVLQ--ALPNLLELRLRD---AYDYEK-L-----HFKDGW 817 (920)
Q Consensus 750 ~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~--~lp~L~~L~L~~---~~~~~~-~-----~~~~~~ 817 (920)
+|++|.|+|+. ..+|. + .+++|++|+|..|.+.......+. .+|+|+.|+|+. +..+.. + ......
T Consensus 173 ~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp TCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 77777777763 24444 3 378999999998887666555554 789999999862 222111 1 112246
Q ss_pred ccccceeeeccCCCCcee---eEcCCCCccccEEEEecCCCCC----ccCcccCCCCCCCEEEEecCh
Q 047503 818 FPRLQRLVLLDLKGVTLM---MIDKGAMPCLRELKIGPCPLLK----EIPAGIEHLRNLEILKFCGML 878 (920)
Q Consensus 818 ~~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~ 878 (920)
||+|++|.+.+|...... ......+|+|+.|+|+.|..-. .++.++.++++|+.|+|++|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 999999999987643322 1123578999999998876322 256677789999999999886
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=6.3e-07 Score=94.30 Aligned_cols=212 Identities=8% Similarity=0.006 Sum_probs=125.1
Q ss_pred CccccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcCccccC------CCCceEEEEeCCCCCHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMN------HFDCRAWITVGRECMKKDLL 242 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~wv~v~~~~~~~~~~ 242 (920)
..+.|||+++++|...|... ......+.|+|.+|+|||++|+.|++...... .| .++.|+...-.+...++
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 34889999999999888652 23467889999999999999999998632111 12 35667766777888999
Q ss_pred HHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH--hcCCcEEEEEEcCCCchhhhHHHHhc--cCCC-CCcEEEEEccc
Q 047503 243 IKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY--LHDKNYMIVLDDVWKIELWGDVEHAL--LDNK-KGSRIMLTTRH 317 (920)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdv~~~~~~~~l~~~l--~~~~-~gs~iivTtR~ 317 (920)
..|.+++... ... .......+...+... -.+++++++||+++....-+.+...+ +... ....||.++..
T Consensus 99 ~~I~~~L~g~---~~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 99 EKIWFAISKE---NLC---GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp HHHHHHHSCC---C-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred HHHHHHhcCC---CCC---chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecC
Confidence 9999998543 111 112223333333332 14567999999998764222222222 1111 12234444433
Q ss_pred hhhh-----hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCC----------------------------------C
Q 047503 318 KAVA-----DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSD----------------------------------G 358 (920)
Q Consensus 318 ~~v~-----~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~----------------------------------~ 358 (920)
.+.. ...........+.+.|.+.++-.+++.+++...... .
T Consensus 173 ~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (318)
T 3te6_A 173 NVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHK 252 (318)
T ss_dssp SCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEE
T ss_pred cccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 2211 111111111468999999999999999876432110 0
Q ss_pred CCChhHHHHHHHHHHHhCCchHHHHHHHhhh
Q 047503 359 GCPPELEKLSHEIVAKCGGLPLAIVAVGGLL 389 (920)
Q Consensus 359 ~~~~~l~~~~~~I~~~c~glPlai~~~~~~l 389 (920)
-.+..++-++++++...|..=.|+.++-...
T Consensus 253 i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 253 INNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp CCHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 0223455566666666777777777766544
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=1.9e-06 Score=95.20 Aligned_cols=232 Identities=10% Similarity=0.095 Sum_probs=138.0
Q ss_pred CceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCccccCCCCCcEEee
Q 047503 553 KIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDL 631 (920)
Q Consensus 553 ~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 631 (920)
+++++.+-.. -..+....|.++ .|+.+.+.. .+..++ ..+.++.+|+.++++.|.+..+|.......+|+.+.+
T Consensus 136 ~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 5777665332 123344566665 699999986 566665 5688899999999999999999887666799999999
Q ss_pred cCCcccccch-hhcccccCCeEeecccCCCcccccccccCc-cCCcccCccccccccC-chhHHhcccCCCCcEEEEEec
Q 047503 632 KHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQEG-FGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGIQLT 708 (920)
Q Consensus 632 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~-i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 708 (920)
..+ ++.++. .+..+++|+.+.+..+ ...++.. +.. ++|+.+.+...- .-....+..+++|+.+.+..+
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-------l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-------VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-------CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-------ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCc
Confidence 754 777765 4788999999999764 2223322 333 677777763322 223446778999999998732
Q ss_pred CCc----chhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCC-CccccCCCCcceEEEEeecc
Q 047503 709 NDD----GKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNL-PDWIFKLKNLVRIGLYWSEL 783 (920)
Q Consensus 709 ~~~----~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~l-p~~~~~l~~L~~L~L~~~~l 783 (920)
... ...-...+..+++|+.+.|..+ ...+.-..+..+. +|+.+.|..+...+ +..|.++ +|+.|.+.++.+
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~-~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNR-KVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCC-SCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCC-CccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 211 0011234667778888777632 1222222333333 55555554433322 2234445 555555555544
Q ss_pred CCCcccccCCCc-ccceeEE
Q 047503 784 TNDPMNVLQALP-NLLELRL 802 (920)
Q Consensus 784 ~~~~~~~l~~lp-~L~~L~L 802 (920)
.......+.++| ++..|.+
T Consensus 358 ~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEE
T ss_pred cccccccccCCCCCccEEEe
Confidence 333333333442 3444444
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.45 E-value=1.6e-06 Score=95.42 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|++..++.+..++..+. ..+.+.|+|..|+||||+|+.+++...-...+. ...+....... .+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~----~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCR----EIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHH----HHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHH----HHh
Confidence 468999999999999997654 235788999999999999999977421111110 00000000001 111
Q ss_pred hhccCCc-----cccCCcCCHHHHHHHHHHH-hcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hh
Q 047503 251 QLTGQSA-----LGEMNNMEEKDLIIAVRQY-LHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VA 321 (920)
Q Consensus 251 ~~~~~~~-----~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 321 (920)
.....+. ..........++...+... ..+++.++|+||++.. +.+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 1000000 0000011112222221110 1346789999999765 345666666655555677777776443 22
Q ss_pred hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 322 DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
...... ...+.+.+++.++..+++.+.+..... . --.+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr--~~~i~~~~l~~~~~~~~l~~~~~~~~~--~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSR--CLQFHLKALDVEQIRHQLEHILNEEHI--A---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTC--C---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhh--eeEeeCCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 212111 267999999999999999876532211 1 113556788999999998776554
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=3.7e-07 Score=89.93 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=39.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++||+++++++.+++.... ...+.|+|.+|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997754 456789999999999999999875
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=3.6e-07 Score=99.51 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=68.9
Q ss_pred hhhhhccCCeeeEEEccC-CCCCcCc-ccccCcccCceeeecCCCccccCc-cccCCCCCcEEeecCCcccccchhhccc
Q 047503 570 MTKLVAEFKLMKVLDFED-APIEFLP-EEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQTLDLKHSLVTQLPVEIKNL 646 (920)
Q Consensus 570 ~~~~~~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~i~~l 646 (920)
++. +..+.+|+.|+|++ |.+..+| ..++.|.+|++|+|++|.+..+|. .+.+|++|++|+|++|.++.+|..+...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 344 67778888888886 8888766 568888888888888888887765 5678888888888888888887765444
Q ss_pred ccCCeEeecccCCCc
Q 047503 647 KKLRYLLVYHSDNGT 661 (920)
Q Consensus 647 ~~L~~L~l~~~~~~~ 661 (920)
.+|++|++.+|.+..
T Consensus 103 ~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 103 LSLQELVLSGNPLHC 117 (347)
T ss_dssp CCCCEEECCSSCCCC
T ss_pred CCceEEEeeCCCccC
Confidence 448888888875443
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=3.6e-08 Score=108.01 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=63.6
Q ss_pred CeeeEEEccCCCCCc--CcccccCcccCceeeecCCCcccc-----Cccc-cCCCCCcEEeecCCcccc-----cchhhc
Q 047503 578 KLMKVLDFEDAPIEF--LPEEVGNLFHLHYLSVRNTKVKVL-----PKSI-GRLLNLQTLDLKHSLVTQ-----LPVEIK 644 (920)
Q Consensus 578 ~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~i~~l-----p~~i-~~L~~L~~L~L~~~~l~~-----lp~~i~ 644 (920)
++|++|+|++|.+.. +..-...+.+|++|+|++|.+... ...+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666655541 111122344555556655555421 1111 134555555555555442 333344
Q ss_pred ccccCCeEeecccCCCcccccccccCccCCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcc---hhHHHHhcc
Q 047503 645 NLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDG---KNLCASIAD 721 (920)
Q Consensus 645 ~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~l~~~l~~ 721 (920)
.+++|++|++++|.+... .. ......+...++|+.|+++.+.... ..+...+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~-g~----------------------~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~ 237 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDE-GL----------------------ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237 (372)
T ss_dssp TCSSCCEEECTTSSCHHH-HH----------------------HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcH-HH----------------------HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence 555555555555421110 00 0112334445556666665333322 234455556
Q ss_pred CCCCCEEEEeeCCCC
Q 047503 722 MENLESLTVESTSRE 736 (920)
Q Consensus 722 ~~~L~~L~L~~~~~~ 736 (920)
.++|++|+|++|.+.
T Consensus 238 ~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 238 HPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCC
T ss_pred CCCCCEEeccCCCCC
Confidence 667777777776543
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=8.5e-07 Score=96.54 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=81.8
Q ss_pred EEEccCC-CCCcCcccccCcccCceeeecC-CCccccC-ccccCCCCCcEEeecCCcccccch-hhcccccCCeEeeccc
Q 047503 582 VLDFEDA-PIEFLPEEVGNLFHLHYLSVRN-TKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHS 657 (920)
Q Consensus 582 ~L~L~~~-~~~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 657 (920)
.++++++ .+..+|. ++.+.+|++|+|++ |.+..+| ..+.+|++|++|+|++|.++.+|. .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 9999988 568999999999999999998865 5799999999999997
Q ss_pred CCCcccccccccCccCCcccCccccccccC
Q 047503 658 DNGTHERGVKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 658 ~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
.+ ..+|..+.....|+.|++..+.
T Consensus 91 ~l------~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 AL------ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CC------SCCCSTTTCSCCCCEEECCSSC
T ss_pred cc------ceeCHHHcccCCceEEEeeCCC
Confidence 43 3455543333338888887765
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.31 E-value=2.3e-06 Score=91.84 Aligned_cols=180 Identities=15% Similarity=0.134 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+++|++..++.+.+++..+. ...+.++|..|+||||+|+.+++.. ....+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHH-HTTCHHHHCEEEETTSTTCT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHh-cCCcccCCeEEEeCccccCh-----------
Confidence 468999999999999887654 3338999999999999999998741 111111 1233333321110
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHH--h-cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hhhh
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQY--L-HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VADF 323 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 323 (920)
... .+....+... + .+++-++|+|+++.. +..+.+...+.....++.+|+||.... +...
T Consensus 83 ------------~~~--~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 83 ------------DVV--RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp ------------TTS--SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred ------------HHH--HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 000 0111111111 1 256789999999765 344556555555556778888776543 2222
Q ss_pred cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 324 CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 324 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
.... ...+.+.+++.++..+++.+.+..... . --.+....|++.++|.+-.+...
T Consensus 149 l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~--~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 149 IQSR--CAVFRFKPVPKEAMKKRLLEICEKEGV--K---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHTT--CEEEECCCCCHHHHHHHHHHHHHTTCC--C---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHhh--CeEEEecCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2111 157999999999999999887643321 1 12355677888999998755443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.30 E-value=1e-05 Score=90.43 Aligned_cols=203 Identities=15% Similarity=0.137 Sum_probs=115.2
Q ss_pred ccc-cchhh--HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC--ceEEEEeCCCCCHHHHHHHHH
Q 047503 172 EVV-GIESA--RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD--CRAWITVGRECMKKDLLIKMI 246 (920)
Q Consensus 172 ~~~-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~ 246 (920)
.|+ |.... ...+..+...... ...+.|+|.+|+||||||+.+++. ....+. .+++++. ..+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHH
Confidence 455 64433 3344444444332 667899999999999999999885 333332 2445443 33444444
Q ss_pred HHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch----hhhHHHHhccC-CCCCcEEEEEccchh--
Q 047503 247 KEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE----LWGDVEHALLD-NKKGSRIMLTTRHKA-- 319 (920)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iivTtR~~~-- 319 (920)
..+... . ...+.+.+..+.-+|++||++... ..+.+...+.. ...|..||+||....
T Consensus 177 ~~~~~~------------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 177 DSMKEG------------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHTT------------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHcc------------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 444321 1 112333444467799999997543 22334333321 234678888887632
Q ss_pred -------hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHHh-----
Q 047503 320 -------VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVGG----- 387 (920)
Q Consensus 320 -------v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~~----- 387 (920)
+...+.. ...+.+.+++.++..+++.+.+.... ...+ .++...|++.++|.+-.+..+..
T Consensus 241 l~~l~~~L~sR~~~---g~~i~l~~p~~e~r~~iL~~~~~~~~--~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 241 LSEFQDRLVSRFQM---GLVAKLEPPDEETRKSIARKMLEIEH--GELP---EEVLNFVAENVDDNLRRLRGAIIKLLVY 312 (440)
T ss_dssp CSSCCHHHHHHHHS---SBCCBCCCCCHHHHHHHHHHHHHHHT--CCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccC---CeEEEeCCCCHHHHHHHHHHHHHHcC--CCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1122221 15789999999999999988774321 1112 23466788899998754332221
Q ss_pred -hhcCCCCChHHHHHHHhccC
Q 047503 388 -LLSTKHGSVSEWRRSLEGLG 407 (920)
Q Consensus 388 -~l~~~~~~~~~w~~~~~~~~ 407 (920)
......-+.+.++.++....
T Consensus 313 a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 313 KETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 11222235677777776554
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.26 E-value=2.9e-05 Score=83.96 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++++|++..++++..++... ......|.|+|.+|+|||+||+.+++. ....| +.+..+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~---------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK---------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc----------
Confidence 57999999999999888752 233556899999999999999999774 22222 2222211110
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCC------------------C
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNK------------------K 307 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~------------------~ 307 (920)
.......+.. ..+..+|+||+++... ....+...+.... +
T Consensus 94 ------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 94 ------------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ------------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ------------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 1111111111 2456789999997652 3333433333211 1
Q ss_pred CcEEEEEccchhh-hhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 308 GSRIMLTTRHKAV-ADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 308 gs~iivTtR~~~v-~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
+..+|.+|..... ...... .....+.+.+++.++...++.+.+.... ..--.+....|++.+.|.|-.+..+
T Consensus 154 ~~~~i~atn~~~~l~~~L~~-R~~~~i~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD-RFGMQFRLEFYKDSELALILQKAALKLN-----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT-TCSEEEECCCCCHHHHHHHHHHHHHHTT-----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh-hcCEEeeCCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 2456666654322 111111 1126799999999999999988764321 1112456677888899998544433
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=2.8e-07 Score=100.83 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=104.9
Q ss_pred CCCeeEEEEecCccccc------cc--cCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcC-cccc---
Q 047503 530 CTKTRRISINQSLNNVL------EW--TEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFL-PEEV--- 597 (920)
Q Consensus 530 ~~~~r~lsl~~~~~~~~------~~--~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i--- 597 (920)
...++.+.+.++..... .. ...+.|++|.+.++.. .......+...+++|+.|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34577888887765211 11 1236788887766543 3334445556778999999999998732 1222
Q ss_pred --cCcccCceeeecCCCccc-----cCccccCCCCCcEEeecCCcccc-----cchhhcccccCCeEeecccCCCccccc
Q 047503 598 --GNLFHLHYLSVRNTKVKV-----LPKSIGRLLNLQTLDLKHSLVTQ-----LPVEIKNLKKLRYLLVYHSDNGTHERG 665 (920)
Q Consensus 598 --~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~ 665 (920)
....+|++|+|++|.+.. ++..+..+++|++|+|++|.++. ++..+...++|++|++++|.+... ..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~-g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT-AA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH-HH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH-HH
Confidence 246789999999999864 66667889999999999998873 456677888999999999854321 11
Q ss_pred ccccCccCCcccCccccccccC
Q 047503 666 VKIQEGFGSLTDLQKLYIVQAN 687 (920)
Q Consensus 666 ~~~p~~i~~l~~L~~L~~~~~~ 687 (920)
..++..+...++|++|++..|.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 1233334455666666666655
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=7e-06 Score=86.43 Aligned_cols=182 Identities=14% Similarity=0.066 Sum_probs=101.9
Q ss_pred CCccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
-++++|.++.+++|.+++... -....-+.|+|.+|+|||+||+.+++. .... .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH-
Confidence 357899999999998877431 123456889999999999999999874 2221 22222211100
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-------------h---hhhHHHHhc
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-------------E---LWGDVEHAL 302 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------~---~~~~l~~~l 302 (920)
.........+...+......++.+|+||+++.. + ....+...+
T Consensus 90 ---------------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 90 ---------------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp ---------------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred ---------------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 000001112222233333456789999999643 1 111222222
Q ss_pred c--CCCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 303 L--DNKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 303 ~--~~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
. ....+..||.||....... . .........+.+.+.+.++..+++...+..... .... ....|++.+.|.
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~----~~~~l~~~~~g~ 222 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL--AEDV----NLEEIAKMTEGC 222 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB--CTTC----CHHHHHHHCTTC
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC--CCcC----CHHHHHHHcCCC
Confidence 2 2234567788887553322 1 111122357899999999999999888754321 1111 235667777774
Q ss_pred -hHHHHH
Q 047503 379 -PLAIVA 384 (920)
Q Consensus 379 -Plai~~ 384 (920)
|-.+..
T Consensus 223 ~~~~i~~ 229 (285)
T 3h4m_A 223 VGAELKA 229 (285)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 534443
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=1.6e-05 Score=88.08 Aligned_cols=301 Identities=9% Similarity=0.038 Sum_probs=142.9
Q ss_pred ccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-ccccCcccCceeeecCCCccccCc-cccCCCC
Q 047503 548 WTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-EEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLN 625 (920)
Q Consensus 548 ~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~ 625 (920)
..++.+|+++.+-.. . ..+-...|.+|.+|+.+++..+ ++.++ ..+.++..|+.+.+..+ +..++. .+.++..
T Consensus 67 F~~c~~L~~i~lp~~--i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST--V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTCTTEEEEECCTT--C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred hhCCCCceEEEeCCC--c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 455667777766422 1 2334567888888888888654 44443 34566677776666542 332222 2233322
Q ss_pred CcEEeecCCcccccc-hhhcccccCCeEeecccCCCcccccccccC-ccCCcccCccccccccC-chhHHhcccCCCCcE
Q 047503 626 LQTLDLKHSLVTQLP-VEIKNLKKLRYLLVYHSDNGTHERGVKIQE-GFGSLTDLQKLYIVQAN-STILKELRKLRQLRK 702 (920)
Q Consensus 626 L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~p~-~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~ 702 (920)
+...... .+..+. ..+..+.+|+.+.+..+ ...++. .+..+++|+.+.+...- .-....+..+..|+.
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-------~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS-------METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLEN 212 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT-------CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCB
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc-------cceeccccccCCCCceEEEcCCCceEeCchhhccccccce
Confidence 2222111 111221 23555566666665442 111221 23445555555443221 111122334444444
Q ss_pred EEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCC-CccccCCCCcceEEEEee
Q 047503 703 LGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNL-PDWIFKLKNLVRIGLYWS 781 (920)
Q Consensus 703 L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~l-p~~~~~l~~L~~L~L~~~ 781 (920)
+.+..+... +........+|+.+.+.... ..+.-.....+. .++.+.+......+ ...+..+..|+.+.+...
T Consensus 213 i~~~~~~~~---i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 213 MEFPNSLYY---LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CCCCTTCCE---ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSS
T ss_pred eecCCCceE---eehhhcccCCCceEEECCCc--eecccccccccc-cceeEEcCCCcceeeccccccccccceeccCce
Confidence 333210000 00112223456666664321 111112222333 56666665443222 223455667777766554
Q ss_pred ccCCCcccccCCCcccceeEEecccCCCeee-EccCCccccceeeeccCCCCceeeE-cCCCCccccEEEEecCCCCCcc
Q 047503 782 ELTNDPMNVLQALPNLLELRLRDAYDYEKLH-FKDGWFPRLQRLVLLDLKGVTLMMI-DKGAMPCLRELKIGPCPLLKEI 859 (920)
Q Consensus 782 ~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~l 859 (920)
.+.. ..+..+++|+.+.+.++ ...+. ..+.++.+|+.+.|.+ .++.+.. .+..|++|+.+.|..+ ++.+
T Consensus 287 ~i~~---~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 287 IVPE---KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp EECT---TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred eecc---ccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEe
Confidence 4322 34556677777777543 11121 1233456677777643 3444432 2345677887777543 5555
Q ss_pred C-cccCCCCCCCEEEEecC
Q 047503 860 P-AGIEHLRNLEILKFCGM 877 (920)
Q Consensus 860 p-~~l~~l~~L~~L~l~~~ 877 (920)
+ ..+.+|++|+++++...
T Consensus 358 ~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG
T ss_pred hHHHhhCCCCCCEEEECCC
Confidence 4 35677888888887543
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.20 E-value=2.3e-06 Score=87.57 Aligned_cols=172 Identities=11% Similarity=0.018 Sum_probs=98.8
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGI---ESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr---~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++++|. +..++.+..++... ....+.|+|.+|+||||||+.+++. .......+.|++.+.-.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---------
Confidence 356663 34555566666543 2567889999999999999999885 3222334667765321100
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--h--hhHHHHhccCC-CCC-cEEEEEccchh--
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--L--WGDVEHALLDN-KKG-SRIMLTTRHKA-- 319 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~--~~~l~~~l~~~-~~g-s~iivTtR~~~-- 319 (920)
..... +.+ .++-+||+||++... . .+.+...+... ..+ .++|+||+...
T Consensus 95 ---------~~~~~-------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 95 ---------STALL-------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp ---------CGGGG-------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred ---------HHHHH-------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 00000 011 346789999997652 1 22333332211 112 24777776432
Q ss_pred -------hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHHH
Q 047503 320 -------VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAVG 386 (920)
Q Consensus 320 -------v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~~ 386 (920)
+...+.. ...+.+.+++.++..+++.+.+.... ... -.+....|++.++|.+-.+..+.
T Consensus 152 ~~~~~~~l~~r~~~---~~~i~l~~~~~~~~~~~l~~~~~~~~--~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 152 AGFVLPDLVSRMHW---GLTYQLQPMMDDEKLAALQRRAAMRG--LQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TTCCCHHHHHHHHH---SEEEECCCCCGGGHHHHHHHHHHHTT--CCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhhhhhhhHhhc---CceEEeCCCCHHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 1111111 15789999999999999988764321 111 23566788889999876655443
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=2.2e-06 Score=92.96 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=31.7
Q ss_pred ccccCcccCceeeecCCCccccCccccCCCCCcEEeecCCccccc-chhh--cccccCCeEeec
Q 047503 595 EEVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKHSLVTQL-PVEI--KNLKKLRYLLVY 655 (920)
Q Consensus 595 ~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~i--~~l~~L~~L~l~ 655 (920)
..+..+++|+.|+|+++.-..+|. + .+++|++|+|..|.+..- ...+ ..+|+|++|+|+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334455666666666652123443 3 366777777766654421 1122 256777777764
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.15 E-value=1.6e-05 Score=84.83 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=90.9
Q ss_pred ccccchhhHHHHHHHHhcC-------------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 172 EVVGIESARDILIGWLVNG-------------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
+++|.+..++.|.+++... ......+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 5789999888887765421 223557899999999999999988774222222222223444311
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-----------hhhhHHHHhccCCCC
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-----------ELWGDVEHALLDNKK 307 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~ 307 (920)
. +.. .........+...+... +.-+|++|+++.. +....+...+.....
T Consensus 109 -~--------l~~--------~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 109 -D--------LVG--------QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp -G--------TCC--------SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred -H--------hhh--------hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 0 000 00111112222222222 4469999999843 334455555555555
Q ss_pred CcEEEEEccchhhhhhc--cc---CCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 308 GSRIMLTTRHKAVADFC--KQ---SSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 308 gs~iivTtR~~~v~~~~--~~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
+..+|.||......... .. ......+.+++++.++..+++.+.+..
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 67888888654321110 00 011267899999999999999887643
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=5.5e-06 Score=94.85 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=107.2
Q ss_pred CccccchhhHHHHHHHHhcCC---------------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 047503 171 DEVVGIESARDILIGWLVNGR---------------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE 235 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~ 235 (920)
.+++|++..++++.+|+.... +..+.+.|+|++|+||||+|+.+++.. .+ .++.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 579999999999999997510 134689999999999999999998852 12 2334444443
Q ss_pred CCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHH--hcCCcEEEEEEcCCCch-----hhhHHHHhccCCCCC
Q 047503 236 CMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQY--LHDKNYMIVLDDVWKIE-----LWGDVEHALLDNKKG 308 (920)
Q Consensus 236 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~g 308 (920)
... .++...+...... . .... ......+. ..+++.+||+|+++... .+..+...+... +
T Consensus 114 ~~~-~~~~~~i~~~~~~---~---~~~~-----~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~ 179 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDN---M---SVVG-----YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--S 179 (516)
T ss_dssp CCH-HHHHHTGGGGTTB---C---CSTT-----TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--S
T ss_pred chH-HHHHHHHHHHhcc---c---cHHH-----HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--C
Confidence 332 2222222111110 0 0000 00000001 13577899999997652 223444333322 2
Q ss_pred cEEEEEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHHHHHHh
Q 047503 309 SRIMLTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAIVAVGG 387 (920)
Q Consensus 309 s~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai~~~~~ 387 (920)
..||+++..........-......+.+.+++.++..+++.+.+..... ... .+....|++.++|. +-++..+..
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~--~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF--KLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC--CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 335555544321111011112257899999999999988876643221 111 23467788899985 555665543
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.13 E-value=6e-05 Score=78.08 Aligned_cols=184 Identities=11% Similarity=0.086 Sum_probs=100.3
Q ss_pred CccccchhhHHHHHHHHh---cCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLV---NGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.++.++.|.+++. ... ...+-+.|+|.+|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 578999988888766543 211 23456789999999999999999884 2222 233443321110
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--------------h---hhhHHHHhcc
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--------------E---LWGDVEHALL 303 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------------~---~~~~l~~~l~ 303 (920)
........+...+.......+.+|++|+++.. + ....+...+.
T Consensus 79 --------------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 79 --------------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp --------------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred --------------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence 00001122223333333456789999999764 1 1122322222
Q ss_pred C--CCCCcEEEEEccchhhh-hhc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 304 D--NKKGSRIMLTTRHKAVA-DFC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~-~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
. ...+..||.||...... ... ........+.+.+.+.++..+++.+.+..... ..........+++.+.|.+
T Consensus 139 ~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 139 GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL----TQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC----CBTHHHHHHHHHHTCTTCC
T ss_pred CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC----CcchhhHHHHHHHHCCCCC
Confidence 2 22355677777654321 111 11122367889999999999999887644321 1112223467788888875
Q ss_pred H-HHHHH
Q 047503 380 L-AIVAV 385 (920)
Q Consensus 380 l-ai~~~ 385 (920)
- .+..+
T Consensus 215 ~~~l~~l 221 (262)
T 2qz4_A 215 GADIANI 221 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3 44433
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.12 E-value=3.7e-05 Score=85.67 Aligned_cols=177 Identities=14% Similarity=0.070 Sum_probs=102.8
Q ss_pred CccccchhhH---HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESAR---DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
++++|.+..+ ..+...+..+. .+.+.|+|..|+||||||+.+.+. .... ++.++.......-+++++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHHHHHH
Confidence 4688988888 77788887765 567899999999999999999884 2222 2333222111122222222
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEE-Eccchh--hhh
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIML-TTRHKA--VAD 322 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~--v~~ 322 (920)
.... ....+++.+|++|+++... ..+.+...+.. + ...+|. ||.+.. +..
T Consensus 97 ~a~~-----------------------~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 97 RARQ-----------------------NRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHH-----------------------HHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCH
T ss_pred HHHH-----------------------hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCH
Confidence 2110 1114678899999997653 34445544443 2 233443 554442 211
Q ss_pred hcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCC--CCChhHHHHHHHHHHHhCCchHHHH
Q 047503 323 FCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDG--GCPPELEKLSHEIVAKCGGLPLAIV 383 (920)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~--~~~~~l~~~~~~I~~~c~glPlai~ 383 (920)
.... ....+.+.+++.++...++.+.+....... ....--.+....|++.++|.+-.+.
T Consensus 152 aL~s--R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 152 ALLS--RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHT--TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHhC--ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1111 126788999999999999988765421100 1111224566778888999876443
No 179
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.1e-06 Score=83.41 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=28.1
Q ss_pred CCcceEEEEeeccCCCcccccCCCcccceeEEeccc
Q 047503 771 KNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAY 806 (920)
Q Consensus 771 ~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~ 806 (920)
.+|+.|+|++|.+++..+..+.++++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 468999999988887777777777777777777664
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.11 E-value=9.7e-05 Score=78.81 Aligned_cols=185 Identities=15% Similarity=0.091 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVN----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.++.++.|.+.+.. .....+-|.|+|++|+|||+||+.+++... .. ..+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh---
Confidence 5789999999988877642 112346788999999999999999998420 11 122233322110
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---------hh----hHHHHhccC---
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---------LW----GDVEHALLD--- 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---------~~----~~l~~~l~~--- 304 (920)
.........+...+...-..++.+|++|+++... .. ..+...+..
T Consensus 85 -------------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 85 -------------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp -------------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred -------------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 0011122222222333334578899999997541 11 122222222
Q ss_pred CCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHH
Q 047503 305 NKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAI 382 (920)
Q Consensus 305 ~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai 382 (920)
...+..||.||.... +...... .....+.+...+.++..+++......... .. -......|++.+.|. +-.+
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l---~~~~l~~la~~t~G~sgadl 219 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEPHARAAMFKLHLGTTQN--SL---TEADFRELGRKTDGYSGADI 219 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTCCB--CC---CHHHHHHHHHTCTTCCHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CC---CHHHHHHHHHHcCCCCHHHH
Confidence 233455665665442 2111111 22257888889999999999887643211 11 134567788888887 4445
Q ss_pred HHHHh
Q 047503 383 VAVGG 387 (920)
Q Consensus 383 ~~~~~ 387 (920)
..+..
T Consensus 220 ~~l~~ 224 (322)
T 1xwi_A 220 SIIVR 224 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.3e-05 Score=85.27 Aligned_cols=194 Identities=16% Similarity=0.143 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+++|+++.++.+..++..+. ...+.|+|..|+||||+|+.+.+.......+. .++.+..+..... ..+++.+..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHHHH
Confidence 468999999999999997764 22388999999999999999987521111111 1233333332222 2333333333
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hhhhccc
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VADFCKQ 326 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~ 326 (920)
...... . .... .....-.+++-+|++|+++.. .....+...+.......++|++|.... +......
T Consensus 114 ~~~~~~----~--~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 114 ARLTVS----K--PSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHSCCC----C--CCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred hhhccc----c--cchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 221000 0 0000 000111235579999999765 334555555544445567777765432 2221111
Q ss_pred CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 327 SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
. ...+.+.+++.++....+.+.+..... .. -.+....|++.++|.|-.+..+
T Consensus 183 R--~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 Q--CSKFRFKALDASNAIDRLRFISEQENV--KC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp H--SEEEECCCCCHHHHHHHHHHHHHTTTC--CC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred c--CceEEeCCCCHHHHHHHHHHHHHHhCC--CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 157899999999999999887643211 11 1356788999999998764443
No 182
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.04 E-value=7.2e-05 Score=82.70 Aligned_cols=326 Identities=11% Similarity=0.056 Sum_probs=172.1
Q ss_pred eEeCCCCccccCCCeeEEEEecCcc--ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCc-c
Q 047503 519 CLDLSREDLSCCTKTRRISINQSLN--NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLP-E 595 (920)
Q Consensus 519 ~~~~~~~~~~~~~~~r~lsl~~~~~--~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~ 595 (920)
++.++...+..+.++..+.+..+-. ......++++|+++.+-+.- ..+....|..+..|+.+.+..+ +..+. .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l---~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSV---KMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTC---CEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCc---eEccchhhcccccchhhcccCc-eeeecce
Confidence 3445555566667777777765432 22234567777777653321 2233456777777777666543 22222 2
Q ss_pred cccCcccCceeeecCCCccccC-ccccCCCCCcEEeecCCcccccch-hhcccccCCeEeecccCCCccccccccc-Ccc
Q 047503 596 EVGNLFHLHYLSVRNTKVKVLP-KSIGRLLNLQTLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQ-EGF 672 (920)
Q Consensus 596 ~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p-~~i 672 (920)
.+.++..+...... .+..++ ..+.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ ...++ ..+
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-------~~~I~~~~F 204 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-------LKIIRDYCF 204 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-------CCEECTTTT
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-------ceEeCchhh
Confidence 23333322222211 222232 34667888888888654 344443 4677888888877653 11222 235
Q ss_pred CCcccCccccccccCchhHHhcccCCCCcEEEEEecCCcchhHHHHhccCCCCCEEEEeeCCCCcccccccCCCCccccc
Q 047503 673 GSLTDLQKLYIVQANSTILKELRKLRQLRKLGIQLTNDDGKNLCASIADMENLESLTVESTSREETFDIQSLGSPPQYLE 752 (920)
Q Consensus 673 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 752 (920)
..+..|+.+.+................|+.+.+....... -...+..+.+|+.+.+..+.. .+......... .++
T Consensus 205 ~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i--~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~-~l~ 279 (394)
T 4fs7_A 205 AECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTEL--GKSVFYGCTDLESISIQNNKL--RIGGSLFYNCS-GLK 279 (394)
T ss_dssp TTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEE--CSSTTTTCSSCCEEEECCTTC--EECSCTTTTCT-TCC
T ss_pred ccccccceeecCCCceEeehhhcccCCCceEEECCCceec--ccccccccccceeEEcCCCcc--eeecccccccc-ccc
Confidence 5666676666544332211222334566666654110000 012345667788887765422 11112233333 566
Q ss_pred EEEEeccCCCCC-ccccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee-EccCCccccceeeeccCC
Q 047503 753 HLYLVGSMKNLP-DWIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH-FKDGWFPRLQRLVLLDLK 830 (920)
Q Consensus 753 ~L~L~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 830 (920)
.+.+.... ++ ..+..+.+|+.+.+.++ +.......+.++++|+.+.|.++ ...+. ..+.++.+|+.+.+..
T Consensus 280 ~~~~~~~~--i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~-- 352 (394)
T 4fs7_A 280 KVIYGSVI--VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL-- 352 (394)
T ss_dssp EEEECSSE--ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT--
T ss_pred eeccCcee--eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc--
Confidence 55544321 11 23456788888888654 33334456777888888887543 22221 2234566777777753
Q ss_pred CCceeeE-cCCCCccccEEEEecCCCCCccCcccCCCCCCCEE
Q 047503 831 GVTLMMI-DKGAMPCLRELKIGPCPLLKEIPAGIEHLRNLEIL 872 (920)
Q Consensus 831 ~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 872 (920)
+++.+.. .+..|++|+.++|..+ ++.+...+.+|++|+.+
T Consensus 353 ~l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 SLRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred cccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 2444432 3456788888888654 34455567777777765
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.04 E-value=7.8e-05 Score=77.67 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=91.9
Q ss_pred CccccchhhHHHHHH-------HHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 047503 171 DEVVGIESARDILIG-------WLVNG-RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLL 242 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~-------~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (920)
..++|....++++++ .+... ......+.|+|..|+|||+||+.+++. .... .+.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~~------ 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDKM------ 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGGC------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHHh------
Confidence 457788777777666 33221 334678999999999999999999884 2211 1222221100
Q ss_pred HHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-----------hh-hhHHHHhccC---CCC
Q 047503 243 IKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-----------EL-WGDVEHALLD---NKK 307 (920)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~-~~~l~~~l~~---~~~ 307 (920)
.. . ........+...+......+..+|+||+++.. .. .+.+...+.. ...
T Consensus 102 -------~g---~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 166 (272)
T 1d2n_A 102 -------IG---F-----SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGR 166 (272)
T ss_dssp -------TT---C-----CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTC
T ss_pred -------cC---C-----chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCC
Confidence 00 0 00000012222333333467889999998643 11 2223232222 222
Q ss_pred CcEEEEEccchhhhhhc-ccCCccceeecCCCCH-HHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCC
Q 047503 308 GSRIMLTTRHKAVADFC-KQSSFVQVHELEALPA-VEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGG 377 (920)
Q Consensus 308 gs~iivTtR~~~v~~~~-~~~~~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~g 377 (920)
...||.||......... -.......+.+++++. ++...++.+.. ... .+....|++.+.|
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-------NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSC---HHHHHHHHHHHTT
T ss_pred CEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-------CCC---HHHHHHHHHHhcC
Confidence 34567777766433221 1112236788999998 66666666532 111 3456778888877
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=1.8e-05 Score=86.29 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHH-hcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc--ccC--CCCc-------------------
Q 047503 171 DEVVGIESARDILIGWL-VNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY--VMN--HFDC------------------- 226 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~~--~F~~------------------- 226 (920)
++++|.+..++.+..++ ..+. ... +.|+|..|+||||+|+.++.... -.+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 46899999999998888 4443 233 89999999999999998766210 000 0110
Q ss_pred -eEEEEeCCCC-CHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhc
Q 047503 227 -RAWITVGREC-MKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHAL 302 (920)
Q Consensus 227 -~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l 302 (920)
.+.+..+... ......++++..+..... . .... .+.. +.+++-++|+|++...+ ....+...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~-----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQ------V-----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcc------c-----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 1111111100 000122333333211100 0 0000 0000 23466799999998753 344455555
Q ss_pred cCCCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 303 LDNKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 303 ~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
.....++.+|++|.... +....... ...+.+.+++.++..+.+.+.+..... ..+ -.+....|++.++|.+-.
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--~~~~l~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQ--CLLIRCPAPSDSEISTILSDVVTNERI--QLE--TKDILKRIAQASNGNLRV 232 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTC--EEC--CSHHHHHHHHHHTTCHHH
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhh--ceEEecCCcCHHHHHHHHHHHHHHcCC--CCC--cHHHHHHHHHHcCCCHHH
Confidence 44344677777776542 22222221 167999999999999999887643211 111 025667888999998865
Q ss_pred HHHHH
Q 047503 382 IVAVG 386 (920)
Q Consensus 382 i~~~~ 386 (920)
+..+.
T Consensus 233 a~~~l 237 (354)
T 1sxj_E 233 SLLML 237 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.99 E-value=0.00012 Score=80.03 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=105.6
Q ss_pred CccccchhhHHH---HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe----CCCCCHHHHHH
Q 047503 171 DEVVGIESARDI---LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV----GRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----~~~~~~~~~~~ 243 (920)
++++|++..++. +.+.+..+....+.+.|+|++|+|||++|+.+.+. ..... ..+.+.. +......+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-CcccccchhhhhcccchhHHHH
Confidence 579999998776 45555555433468899999999999999999885 22211 1112221 12233444444
Q ss_pred HHHHHHhhhcc----------------CCccc----cCCc---CCHHHHHHHHHHHh-----cCC----cEEEEEEcCCC
Q 047503 244 KMIKEFHQLTG----------------QSALG----EMNN---MEEKDLIIAVRQYL-----HDK----NYMIVLDDVWK 291 (920)
Q Consensus 244 ~i~~~l~~~~~----------------~~~~~----~~~~---~~~~~l~~~l~~~L-----~~k----r~LlVlDdv~~ 291 (920)
+.+........ ...+. .... .....+...+.... .++ +.+|++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 43332111000 00000 0000 00122222222221 233 35999999987
Q ss_pred c--hhhhHHHHhccCCCCCcEEEEEccc-------------hhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCC
Q 047503 292 I--ELWGDVEHALLDNKKGSRIMLTTRH-------------KAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVS 356 (920)
Q Consensus 292 ~--~~~~~l~~~l~~~~~gs~iivTtR~-------------~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 356 (920)
. +....+...+...... .++++|.. ..+...... ....+.+.+++.++..+++.+.+.....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5 3445555555443333 34444431 111111111 1145899999999999999987644221
Q ss_pred CCCCChhHHHHHHHHHHHhC-CchHHHHH
Q 047503 357 DGGCPPELEKLSHEIVAKCG-GLPLAIVA 384 (920)
Q Consensus 357 ~~~~~~~l~~~~~~I~~~c~-glPlai~~ 384 (920)
. --.+....|++.+. |.|-.+..
T Consensus 278 --~---~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 --E---MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp --C---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred --C---CCHHHHHHHHHHhcCCCHHHHHH
Confidence 1 12356677888887 77654443
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.95 E-value=8.3e-05 Score=80.74 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=103.6
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVN----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.+..++.|.+++.. .....+.|.|+|..|+|||+||+.+++. ... ..+.++.+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhcc--
Confidence 5789999999999887742 1123567889999999999999999874 211 1233443221110
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-------------hhhhHHHHhccC---
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-------------ELWGDVEHALLD--- 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~--- 304 (920)
........+...+...-..++.+|+||+++.. .....+...+..
T Consensus 157 --------------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 157 --------------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp --------------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred --------------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 00000111111222222356789999999542 112233333332
Q ss_pred -CCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHH
Q 047503 305 -NKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLA 381 (920)
Q Consensus 305 -~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Pla 381 (920)
...+..||.||.... +...... .....+.+...+.++..+++...+..... .. ..+....|++.+.|. +-.
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~l---~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQC--CL---SEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSCB--CC---CHHHHHHHHHHTTTCCHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcCC--Cc---cHHHHHHHHHHcCCCCHHH
Confidence 123445665665432 2222211 12256788889999999988877643211 11 135667888899884 556
Q ss_pred HHHHHh
Q 047503 382 IVAVGG 387 (920)
Q Consensus 382 i~~~~~ 387 (920)
+..+..
T Consensus 291 l~~l~~ 296 (357)
T 3d8b_A 291 MTQLCR 296 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.94 E-value=0.00014 Score=77.88 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
++++|.+..++.+.+++..+. ...++.+.|..|+|||++|+.+++. .. ..++.++.+.. . .+.+++.+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHHHHHH
Confidence 578999999999999998654 2467888899999999999999874 21 12344444331 2 222232222221
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hhhHHHHhccCCCCCcEEEEEccchh-hhhhccc
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LWGDVEHALLDNKKGSRIMLTTRHKA-VADFCKQ 326 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~ 326 (920)
... ...+++-+||+|+++... ..+.+...+.....+.++|+||.... +......
T Consensus 98 ~~~----------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 98 SAA----------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HBC----------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred hhc----------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 110 012367899999998754 34444444443334567888776543 1111111
Q ss_pred CCccceeecCCCCHHHHHHHH-------HHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-HHHHHHhh
Q 047503 327 SSFVQVHELEALPAVEAWRLF-------CRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL-AIVAVGGL 388 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf-------~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl-ai~~~~~~ 388 (920)
. ...+.+.+++.++-.+++ .+.+.... ...++ .+....|++.++|.+- |+..+-.+
T Consensus 156 R--~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 156 R--CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp H--SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred h--CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 157899999988843332 22221111 01111 2566778888888765 44444333
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.94 E-value=1.4e-05 Score=77.89 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++||+.+++.+.+++.... ...+.|+|..|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997743 456789999999999999999874
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.91 E-value=8.8e-05 Score=79.33 Aligned_cols=184 Identities=17% Similarity=0.119 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHh----------cCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLV----------NGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.++.++.|.+++. ......+-|.|+|.+|+|||+||+.+++. .... .+.|+. .+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~------~~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSS------SD 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEH------HH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEch------HH
Confidence 578999999999988873 11223467899999999999999999884 2222 122222 11
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhHHHHhcc---C
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-------------LWGDVEHALL---D 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~---~ 304 (920)
+ .... .......+...+...-..++.+|+||+++... ....+...+. .
T Consensus 87 l--------~~~~--------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 87 L--------VSKW--------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp H--------HTTT--------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred H--------hhcc--------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 1 1110 00011122222222334567899999997541 1233333332 2
Q ss_pred CCCCcEEEEEccchhhh-hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHH
Q 047503 305 NKKGSRIMLTTRHKAVA-DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAI 382 (920)
Q Consensus 305 ~~~gs~iivTtR~~~v~-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai 382 (920)
...+..||.||...... ..... .....+.+...+.++-.+++...+..... .. -......|++.+.|. +-.+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~---~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPC--VL---TKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHH-HCCEEEECCCCCHHHHHHHHHHHHTTCCC--CC---CHHHHHHHHHTTTTCCHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHc-ccCeEEEeCCCCHHHHHHHHHHHhccCCC--CC---CHHHHHHHHHHcCCCCHHHH
Confidence 33456666677654321 11111 12256788889999999999988754321 11 123556788888874 5455
Q ss_pred HHHHh
Q 047503 383 VAVGG 387 (920)
Q Consensus 383 ~~~~~ 387 (920)
..+..
T Consensus 225 ~~l~~ 229 (322)
T 3eie_A 225 AVVVK 229 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.91 E-value=0.00024 Score=78.25 Aligned_cols=184 Identities=16% Similarity=0.074 Sum_probs=100.6
Q ss_pred CCccccchhhHHHHHHHHhcC----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 170 DDEVVGIESARDILIGWLVNG----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
-++++|.+..++.|.+++... ....+-|.|+|..|+|||+||+.+++. ... ..+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 357999999999998887321 112467899999999999999999874 211 1223333221110
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-------------hhhhHHHHhcc---
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-------------ELWGDVEHALL--- 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~--- 303 (920)
. .......+...+...-...+.+|+||+++.. .....+...+.
T Consensus 188 -~--------------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 188 -Y--------------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp -------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred -c--------------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 0 0001112222222222346689999999654 01112222222
Q ss_pred C-CCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH-
Q 047503 304 D-NKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL- 380 (920)
Q Consensus 304 ~-~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl- 380 (920)
. ......||.||.... +...... .....+.+...+.++..+++...+..... . -..+....|++.+.|..-
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~---l~~~~~~~la~~~~g~~~~ 320 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGS--P---LTQKELAQLARMTDGYSGS 320 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCC--C---SCHHHHHHHHHHTTTCCHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCC--C---CCHHHHHHHHHHcCCCCHH
Confidence 1 123345666665432 2211111 12246889999999999999887644321 1 123456788889988644
Q ss_pred HHHHHH
Q 047503 381 AIVAVG 386 (920)
Q Consensus 381 ai~~~~ 386 (920)
++..+.
T Consensus 321 ~l~~L~ 326 (389)
T 3vfd_A 321 DLTALA 326 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.89 E-value=0.0002 Score=80.11 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=102.7
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVN----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++.. ...-++.++.. +
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHH----H
Confidence 5789999999999887731 01234678999999999999999999842 12234444332 1
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc---------hhhhHH----HHhccC---
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI---------ELWGDV----EHALLD--- 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~l----~~~l~~--- 304 (920)
+.. ..... . ......+.. ..-..++.+|+||+++.. +....+ ...+..
T Consensus 204 l~~----~~~g~--------~-~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 204 LVS----KWLGE--------S-EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp --------------------C-CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred HHh----hhcch--------H-HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 111 11000 0 011122222 222357789999999754 111222 222222
Q ss_pred CCCCcEEEEEccchhhh-hhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHH
Q 047503 305 NKKGSRIMLTTRHKAVA-DFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAI 382 (920)
Q Consensus 305 ~~~gs~iivTtR~~~v~-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai 382 (920)
...+..||.||...... ..... .....+.+...+.++...+|...+..... .. -......|++.+.|. +-.|
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l---~~~~l~~la~~t~G~sgadl 341 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAHARAAMFRLHLGSTQN--SL---TEADFQELGRKTDGYSGADI 341 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCE--EC---CHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHh-hcceEEEeCCcCHHHHHHHHHHHHhcCCC--CC---CHHHHHHHHHHcCCCCHHHH
Confidence 23456677677654322 11111 22256788888888888898887643210 01 124567788889885 4455
Q ss_pred HHHHh
Q 047503 383 VAVGG 387 (920)
Q Consensus 383 ~~~~~ 387 (920)
..+..
T Consensus 342 ~~l~~ 346 (444)
T 2zan_A 342 SIIVR 346 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=3.2e-06 Score=82.48 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=64.0
Q ss_pred hhhhhhccCCeeeEEEccCC-CCC-----cCcccccCcccCceeeecCCCcc-----ccCccccCCCCCcEEeecCCccc
Q 047503 569 FMTKLVAEFKLMKVLDFEDA-PIE-----FLPEEVGNLFHLHYLSVRNTKVK-----VLPKSIGRLLNLQTLDLKHSLVT 637 (920)
Q Consensus 569 ~~~~~~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~ 637 (920)
.+...+...+.|+.|+|++| .+. .+...+....+|++|+|++|.+. .+...+...++|++|+|++|.++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456677888999999888 775 24455666778888888888776 24555666778888888888777
Q ss_pred c-----cchhhcccccCCeEee--ccc
Q 047503 638 Q-----LPVEIKNLKKLRYLLV--YHS 657 (920)
Q Consensus 638 ~-----lp~~i~~l~~L~~L~l--~~~ 657 (920)
. +...+...++|++|++ ++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 3 4556677778888888 555
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.85 E-value=0.00024 Score=76.25 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc--------------------CCCCceEEEEeCCCC
Q 047503 177 ESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM--------------------NHFDCRAWITVGREC 236 (920)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~v~~~~ 236 (920)
++..+.+...+..+. -.+.+.++|..|+||||+|+.+.+.-.-. .|++ ..++....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 455677777776653 24678999999999999999987641100 0112 12222110
Q ss_pred CHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-----cCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCc
Q 047503 237 MKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-----HDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGS 309 (920)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 309 (920)
.......+++. .+.+.+ .+++-++|+|+++.. +....+...+-....++
T Consensus 84 -----------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~ 139 (334)
T 1a5t_A 84 -----------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAET 139 (334)
T ss_dssp -----------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTE
T ss_pred -----------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCe
Confidence 00112222222 222222 256789999999875 34556666666555567
Q ss_pred EEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 310 RIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 310 ~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
.+|++|.... +.....+.. ..+.+.+++.++..+.+.+.. . .. .+.+..+++.++|.|..+..+
T Consensus 140 ~~Il~t~~~~~l~~ti~SRc--~~~~~~~~~~~~~~~~L~~~~--~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 140 WFFLATREPERLLATLRSRC--RLHYLAPPPEQYAVTWLSREV--T-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHC--C-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEEEeCChHhCcHHHhhcc--eeeeCCCCCHHHHHHHHHHhc--C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 7777766543 332222222 689999999999999988775 1 01 245577889999999765444
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.84 E-value=0.00026 Score=74.87 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=92.0
Q ss_pred CccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
++++|.++.+++|.+++... -...+.|.|+|.+|+|||+||+.+++. ... -++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hH
Confidence 46899999999888877531 123567899999999999999999984 221 223332 22
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch----------------hhhHHHHhcc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE----------------LWGDVEHALL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~ 303 (920)
++.. ..... ....+...+.......+.+|++|+++... ....+...+.
T Consensus 84 ~l~~----~~~g~------------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 84 ELLT----MWFGE------------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHHH----HHHTT------------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred HHHh----hhcCc------------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 2222 22111 01122333333334577999999997421 1233333332
Q ss_pred C--CCCCcEEEEEccchhhh-hh-cccCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 304 D--NKKGSRIMLTTRHKAVA-DF-CKQSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~-~~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
. ...+..||.||...... .. .........+.+...+.++-.+++......
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 2 23356777777655322 22 221123367889999999999988877643
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.84 E-value=0.00044 Score=74.02 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccc
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALG 259 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (920)
...+..++..+......+.|+|++|+||||||+.+++. ....-..+++++. .++..++...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-------
Confidence 34455555544323567889999999999999999885 2111123445543 33444444443221
Q ss_pred cCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch---hh-hHHHHhccC-CCCCcEEEEEccchhh---------hhhcc
Q 047503 260 EMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE---LW-GDVEHALLD-NKKGSRIMLTTRHKAV---------ADFCK 325 (920)
Q Consensus 260 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~ 325 (920)
... .+.+.+. +.-+|++||+.... .+ +.+...+.. ...|..||+||....- ...+.
T Consensus 88 -----~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 88 -----TIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE 157 (324)
T ss_dssp -----CHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred -----cHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhccc
Confidence 111 1222222 36799999997653 22 233333321 1235678887754311 11111
Q ss_pred cCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 326 QSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 326 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
. ...+.+.+ +.++..+++.+.+.... ...+ .+....|++.+ |..-
T Consensus 158 ~---~~~i~l~~-~~~e~~~il~~~~~~~~--~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 158 G---GILVEIEL-DNKTRFKIIKEKLKEFN--LELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp T---SEEEECCC-CHHHHHHHHHHHHHHTT--CCCC---HHHHHHHHHHC-SSHH
T ss_pred C---ceEEEeCC-CHHHHHHHHHHHHHhcC--CCCC---HHHHHHHHHhC-CCHH
Confidence 1 15689999 99999999988875322 1122 34566777778 6653
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=0.00023 Score=77.13 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=101.5
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVN----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.+..++.|.+.+.. .....+-|.|+|..|+|||+||+.+++. .... .+.+.. .+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~------~~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSS------SD 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEH------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeH------HH
Confidence 4789999999999887731 1122356889999999999999999985 2221 222222 11
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhHHHHhcc---C
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-------------LWGDVEHALL---D 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~---~ 304 (920)
+. .. ........+...+...-..++.+|+||+++... ....+...+. .
T Consensus 120 l~--------~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 120 LV--------SK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp HH--------SC--------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred Hh--------hh--------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 11 10 001111222222222334578999999997542 0122222222 1
Q ss_pred CCCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHHH
Q 047503 305 NKKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLAI 382 (920)
Q Consensus 305 ~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Plai 382 (920)
...+..||.||.... +...... .....+.+.+.+.++..+++......... .. -......|++.+.|. +-.|
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~---~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPS--VL---TKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSCB--CC---CHHHHHHHHHHTTTCCHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CC---CHHHHHHHHHHcCCCCHHHH
Confidence 234556666665542 2111111 22267789999999999999887643311 11 134557788889884 5445
Q ss_pred HHHH
Q 047503 383 VAVG 386 (920)
Q Consensus 383 ~~~~ 386 (920)
..+.
T Consensus 258 ~~l~ 261 (355)
T 2qp9_X 258 AVVV 261 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 197
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=5.3e-06 Score=78.72 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=64.6
Q ss_pred cccceeEEecccCCCeeeEccCCccccceeeeccCCCCceeeEc-CCC----CccccEEEEecCCCCCc-cCcccCCCCC
Q 047503 795 PNLLELRLRDAYDYEKLHFKDGWFPRLQRLVLLDLKGVTLMMID-KGA----MPCLRELKIGPCPLLKE-IPAGIEHLRN 868 (920)
Q Consensus 795 p~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~----~~~L~~L~l~~c~~l~~-lp~~l~~l~~ 868 (920)
.+|+.|+|++|.+...-.....++++|++|+|++|..+++.... ... +++|++|+|++|+.++. --..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999998765442223468999999999999988775332 122 46899999999998773 1235678999
Q ss_pred CCEEEEecCh
Q 047503 869 LEILKFCGML 878 (920)
Q Consensus 869 L~~L~l~~~~ 878 (920)
|++|+|++||
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999998
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.78 E-value=0.00032 Score=74.05 Aligned_cols=182 Identities=16% Similarity=0.109 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcC----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVNG----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.+..++.+.+++... ....+.+.|+|++|+||||+|+.+++. ... ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh---
Confidence 57899999999998877431 112467899999999999999999874 211 122333322110
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHH-HHHHhcCCcEEEEEEcCCCch-------------hhhHHHH---hcc
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA-VRQYLHDKNYMIVLDDVWKIE-------------LWGDVEH---ALL 303 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~---~l~ 303 (920)
. ... ........ +......++.+|++|+++... ....+.. .++
T Consensus 93 -----------~--------~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 93 -----------K--------YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp -----------S--------SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred -----------c--------ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 0 000 11222222 222234567899999996531 0111222 122
Q ss_pred CC--CCCcEEEEEccchh-hhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchH
Q 047503 304 DN--KKGSRIMLTTRHKA-VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPL 380 (920)
Q Consensus 304 ~~--~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPl 380 (920)
.. +.+..||.||.... +...... .....+.+...+.++...++...+..... .. .......|++.+.|.+-
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~---~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQTRELLLNRLLQKQGS--PL---DTEALRRLAKITDGYSG 226 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHHHHHHHHHHHGGGSC--CS---CHHHHHHHHHHTTTCCH
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHHHHHHHHHHHHhcCC--CC---CHHHHHHHHHHcCCCCH
Confidence 21 13456666776543 1111111 11156777888888888888776543211 11 12456778888999875
Q ss_pred -HHHHHH
Q 047503 381 -AIVAVG 386 (920)
Q Consensus 381 -ai~~~~ 386 (920)
++..+.
T Consensus 227 ~~l~~l~ 233 (297)
T 3b9p_A 227 SDLTALA 233 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 554443
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.00028 Score=76.17 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=101.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.+++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++... ...+. .+.-++.+..... +.+++.+..+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~-~~ir~~i~~~ 100 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI-DVVRNQIKDF 100 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-HHHHTHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-HHHHHHHHHH
Confidence 357899999999988888764 32388999999999999999887411 11111 1122222221111 1112222221
Q ss_pred hhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh-hhhhccc
Q 047503 250 HQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA-VADFCKQ 326 (920)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~ 326 (920)
... . ..+.+.+-++|+|+++.. +..+.+...+......+.+|++|.... +......
T Consensus 101 ~~~---~------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 101 AST---R------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp HHB---C------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred Hhh---c------------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 110 0 001234678999999754 344555554444444567777665432 2111111
Q ss_pred CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHH
Q 047503 327 SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLA 381 (920)
Q Consensus 327 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPla 381 (920)
. ...+.+.+++.++..+.+.+.+.... ... -.+..+.|++.++|.+--
T Consensus 160 R--~~~~~~~~l~~~~~~~~l~~~~~~~~--~~i---~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 160 Q--CTRFRFQPLPQEAIERRIANVLVHEK--LKL---SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp T--SEEEECCCCCHHHHHHHHHHHHHTTT--CCB---CHHHHHHHHHHHTTCHHH
T ss_pred h--ceeEeccCCCHHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHcCCCHHH
Confidence 1 15788999999999888877653221 111 134567788888988764
No 200
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.75 E-value=5.5e-05 Score=70.29 Aligned_cols=113 Identities=12% Similarity=-0.034 Sum_probs=66.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhh
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQ 251 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (920)
+++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+++.... .... .+ +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc-------------
Confidence 5789999999999888642222234679999999999999999885211 1111 23 555432211
Q ss_pred hccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCCCCcEEEEEccch
Q 047503 252 LTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
.... ..+.. .+.-.|++|+++... ....+...+.......++|.||...
T Consensus 66 ------------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ------------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ------------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ------------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0001 11111 133468999998763 4455555554444456777777643
No 201
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.67 E-value=7.3e-05 Score=72.44 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHhcCC-CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhcc
Q 047503 176 IESARDILIGWLVNGR-KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTG 254 (920)
Q Consensus 176 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 254 (920)
.+..++.+.+++.+-. .....+.|+|..|+||||||+.+++.......+ .+++++ ..++...+.......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~-- 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG-- 89 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc--
Confidence 4455555666665432 234689999999999999999998852212222 234443 444444444433221
Q ss_pred CCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCC--chhhh--HHHHhccCC-CCCcEEEEEccch
Q 047503 255 QSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWK--IELWG--DVEHALLDN-KKGSRIMLTTRHK 318 (920)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 318 (920)
. . ..... .+. +.-+|||||++. .+.|. .+...+... ..|..+|+||...
T Consensus 90 -----~---~--~~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 -----K---D--TKFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -----C---C--SHHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -----h---H--HHHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 0 11122 222 456899999983 34444 222222221 2467788888643
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=4e-05 Score=78.51 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred hccCCeeeEEEccCCCCCcCc---ccccCcccCceeeecCCCccccCccccCCC--CCcEEeecCCccc-ccc-------
Q 047503 574 VAEFKLMKVLDFEDAPIEFLP---EEVGNLFHLHYLSVRNTKVKVLPKSIGRLL--NLQTLDLKHSLVT-QLP------- 640 (920)
Q Consensus 574 ~~~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~l~-~lp------- 640 (920)
..++++|+.|+|++|.+..++ ..++.+++|++|+|++|.+..+ ..+..+. +|++|+|++|.+. .+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 367889999999999987654 5567888999999999888876 3345444 8899999888776 344
Q ss_pred hhhcccccCCeEee
Q 047503 641 VEIKNLKKLRYLLV 654 (920)
Q Consensus 641 ~~i~~l~~L~~L~l 654 (920)
..+..+|+|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23667888888864
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.00074 Score=69.50 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=83.9
Q ss_pred CccccchhhHHHHHHHH---hcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWL---VNGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.+..++++.+.+ .... ...+-+.|+|..|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 57899998887776543 2210 11345889999999999999999874 22222 3332221100
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch----------------hhhHHHHhccC
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE----------------LWGDVEHALLD 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~ 304 (920)
.........+...+.......+.++++|+++... ....+...+..
T Consensus 84 -------------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 84 -------------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp -------------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred -------------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
Confidence 0011122333333444434567899999984320 11122222221
Q ss_pred --CCCCcEEEEEccchh-hhhhc-ccCCccceeecCCCCHHHHHHHHHHHhc
Q 047503 305 --NKKGSRIMLTTRHKA-VADFC-KQSSFVQVHELEALPAVEAWRLFCRKAF 352 (920)
Q Consensus 305 --~~~gs~iivTtR~~~-v~~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 352 (920)
...+..||.||...+ +.... ........+.+...+.++-.+++.....
T Consensus 145 ~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp CCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 233456677776553 22222 1112235678888888888888877653
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=0.00025 Score=86.38 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccCCC-C-ceEEEEeCCCCCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---VMNHF-D-CRAWITVGRECMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~-~~~wv~v~~~~~~~~~~~~i 245 (920)
+.++||++++.++++.|.... ..-+.++|.+|+||||+|+.+++... +.... + .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 468999999999999997754 33467999999999999999987421 11111 1 233333321100
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHhc-CCcEEEEEEcCCCch-------hhh---HHHHhccCCCCCcEEEEE
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLH-DKNYMIVLDDVWKIE-------LWG---DVEHALLDNKKGSRIMLT 314 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivT 314 (920)
+.. ........+...+...-. +++.+|++|++.... .++ .+...+.. + +..+|.+
T Consensus 240 ----g~~--------~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~a 305 (854)
T 1qvr_A 240 ----GAK--------YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEE
T ss_pred ----cCc--------cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEe
Confidence 000 000011122222222222 367899999997642 122 23333322 2 3345555
Q ss_pred ccchhh-----hhhcccCCccceeecCCCCHHHHHHHHHHH
Q 047503 315 TRHKAV-----ADFCKQSSFVQVHELEALPAVEAWRLFCRK 350 (920)
Q Consensus 315 tR~~~v-----~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 350 (920)
|..... ...... ....+.+++.+.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCceEEeCCCCHHHHHHHHHhh
Confidence 544332 111111 1246899999999999988754
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0012 Score=71.06 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=99.0
Q ss_pred CccccchhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN-----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 5688999988888765532 1123577889999999999999999985 32222 3333321110
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch----------h------hhHHHHhcc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE----------L------WGDVEHALL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------~------~~~l~~~l~ 303 (920)
.....+...+...+...-...+++|++|+++... . ...+...+.
T Consensus 221 --------------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 221 --------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp --------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred --------------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 0000011112222222224578999999997530 0 112222232
Q ss_pred C--CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 304 D--NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
. ...+-.||.||...+... + ......+..+.++.-+.++-.++|+.+.....- ....+ ...|++++.|.-
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCC----HHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHCCCCC
Confidence 2 233445666776554322 2 222334578899988998889999877643321 11112 356677887763
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=8.9e-05 Score=73.33 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHhcCCCC--cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 177 ESARDILIGWLVNGRKQ--RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 177 ~~~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
...++.+.+++...... ...+.|+|.+|+||||||+.+++. .......++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 34455666666654321 268889999999999999999985 3333445667654
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=5.7e-05 Score=73.47 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=81.4
Q ss_pred CCCCceEEEeeccCCCCc---chhhhhhccCCeeeEEEccCCCCC-----cCcccccCcccCceeeecCCCccc-----c
Q 047503 550 EDSKIRSVFFLNVDKLPG---SFMTKLVAEFKLMKVLDFEDAPIE-----FLPEEVGNLFHLHYLSVRNTKVKV-----L 616 (920)
Q Consensus 550 ~~~~lrsL~~~~~~~~~~---~~~~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~i~~-----l 616 (920)
..+.+++|.+.++..+.. ..+...+...+.|++|+|++|.+. .+...+.....|++|+|++|.|.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 456677776655422222 233455677899999999999986 244556667889999999999874 6
Q ss_pred CccccCCCCCcEEee--cCCcccc-----cchhhcccccCCeEeecccC
Q 047503 617 PKSIGRLLNLQTLDL--KHSLVTQ-----LPVEIKNLKKLRYLLVYHSD 658 (920)
Q Consensus 617 p~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 658 (920)
...+...++|++|+| ++|.++. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 677888899999999 8888873 45567777999999999873
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0019 Score=70.84 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN-----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+.+++. .... .+.|+.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc--
Confidence 5678999988888776642 1134678899999999999999999985 2222 23333322111
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--------h--------hhhHHHHhcc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--------E--------LWGDVEHALL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------~--------~~~~l~~~l~ 303 (920)
.....+...+...+...-...+++|++|+++.. . ....+...+.
T Consensus 254 --------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 254 --------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp --------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 000001111222222222457899999999753 0 0112333332
Q ss_pred C--CCCCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 304 D--NKKGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
. ...+..||.||-...... ++ .....+..+.++.-+.++-.++|+.+...... ....+ ...|++.+.|.-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB--CSCCC----HHHHHHTCCSCC
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHhCCCCC
Confidence 2 233567777776654332 22 22224467888888888888888877644321 11112 345667777753
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.48 E-value=7.3e-05 Score=69.26 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=33.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 172 EVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++|++..++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789999999988887642111234679999999999999999885
No 210
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.0012 Score=72.74 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=71.9
Q ss_pred cccCCCCcceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee-EccCCccccceeeeccCCCCceeeE-cCCCCc
Q 047503 766 WIFKLKNLVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH-FKDGWFPRLQRLVLLDLKGVTLMMI-DKGAMP 843 (920)
Q Consensus 766 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 843 (920)
.+..+.+|+.+.+.++. .......+.++++|+.+.+... ...+. ..+.++.+|+.+.|.. +++.+.. .+..|+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 45677888888886542 2223455677888888888532 11221 2234567888888864 3555532 345678
Q ss_pred cccEEEEecCCCCCccC-cccCCCCCCCEEEEecChHHH
Q 047503 844 CLRELKIGPCPLLKEIP-AGIEHLRNLEILKFCGMLTVI 881 (920)
Q Consensus 844 ~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~ 881 (920)
+|+.+.|..+ ++.+. ..+.+|++|+.+++.+....+
T Consensus 335 ~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 335 QLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp TCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 9999999643 56665 467899999999999876443
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0011 Score=72.38 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=98.5
Q ss_pred CccccchhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN-----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+.+++. .... .+.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 4688999988888765421 1134678889999999999999999985 3222 23333221100
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--------hh--------hhHHHHhcc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--------EL--------WGDVEHALL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------~~--------~~~l~~~l~ 303 (920)
.....+...+...+...-...+++|++|+++.. .. ...+...+.
T Consensus 282 --------------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 282 --------------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp --------------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred --------------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 000011112222222223457899999999753 00 111222222
Q ss_pred C--CCCCcEEEEEccchhhh-hh-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 304 D--NKKGSRIMLTTRHKAVA-DF-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 304 ~--~~~gs~iivTtR~~~v~-~~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
. ...+..||.||-..... .+ .....++..+.+..-+.++-.++|+.+.....- ...-+ ...|++.|.|.-
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIR----WELISRLCPNST 415 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCC----HHHHHHHCCSCC
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCC----HHHHHHHCCCCC
Confidence 2 22344566677555432 22 222334578899988999889999877643321 11112 355677887763
No 212
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.0011 Score=72.98 Aligned_cols=301 Identities=12% Similarity=0.084 Sum_probs=147.8
Q ss_pred CceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCC---CCcCc-ccccCcccCceeeecCCCccccCc-cccCCCCCc
Q 047503 553 KIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAP---IEFLP-EEVGNLFHLHYLSVRNTKVKVLPK-SIGRLLNLQ 627 (920)
Q Consensus 553 ~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---~~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~ 627 (920)
.|+++.+-+.- ..+-...|.+|.+|+.+.+..+. ++.++ ..+..+..|+.+.+..+ +..++. .+..+.+|+
T Consensus 65 ~L~sI~iP~sv---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDTV---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTTC---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCCe---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 36666664321 22334567888888888877653 44443 34556677777666543 444543 356777888
Q ss_pred EEeecCCcccccch-hhcccccCCeEeecccCCCcccccccccCccCCcccCccccccccC-chhHHhcccCCCCcEEEE
Q 047503 628 TLDLKHSLVTQLPV-EIKNLKKLRYLLVYHSDNGTHERGVKIQEGFGSLTDLQKLYIVQAN-STILKELRKLRQLRKLGI 705 (920)
Q Consensus 628 ~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l 705 (920)
.+.+..+ +..++. .+..+.+|+.+.+..+. ..+....-...+|..+.+...- ......+..+..+.....
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~-------~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV-------TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTTC-------CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred cccccce-eeeecccceeccccccccccccee-------eEeccccccccceeEEEECCcccccccchhhhccccceecc
Confidence 8887543 333332 46667777777776531 1111111112334444332211 111222334444444433
Q ss_pred EecCCc-ch-hH----------HHHhccCCCCCEEEEeeCCCCcccccccCCCCcccccEEEEeccCCCC-CccccCCCC
Q 047503 706 QLTNDD-GK-NL----------CASIADMENLESLTVESTSREETFDIQSLGSPPQYLEHLYLVGSMKNL-PDWIFKLKN 772 (920)
Q Consensus 706 ~~~~~~-~~-~l----------~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~l-p~~~~~l~~ 772 (920)
...... .. .+ .........+..+.+... ...+.-..+..+. .|+.+.+......+ ...+..+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~-~L~~i~lp~~~~~I~~~aF~~c~~ 289 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCA-YLASVKMPDSVVSIGTGAFMNCPA 289 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCS-SCCEEECCTTCCEECTTTTTTCTT
T ss_pred cccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecc-cccEEecccccceecCcccccccc
Confidence 211000 00 00 000001122233322111 0111112233334 67777765443222 234566788
Q ss_pred cceEEEEeeccCCCcccccCCCcccceeEEecccCCCeee-EccCCccccceeeeccCCCCceeeE-cCCCCccccEEEE
Q 047503 773 LVRIGLYWSELTNDPMNVLQALPNLLELRLRDAYDYEKLH-FKDGWFPRLQRLVLLDLKGVTLMMI-DKGAMPCLRELKI 850 (920)
Q Consensus 773 L~~L~L~~~~l~~~~~~~l~~lp~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l 850 (920)
|+.+.+.. .+.......+.++++|+.+.|..+ ...+. ..+.++.+|+.+.|-. .++.+.. .+..|++|+.+++
T Consensus 290 L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 290 LQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEE
T ss_pred cccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEE
Confidence 88888854 333344456778888998888643 12221 2345677888888853 3444432 3567889999998
Q ss_pred ecCCCCCccCcccCCCCCCCEEEEec
Q 047503 851 GPCPLLKEIPAGIEHLRNLEILKFCG 876 (920)
Q Consensus 851 ~~c~~l~~lp~~l~~l~~L~~L~l~~ 876 (920)
.++.. .+ ..+..+.+|+.|.+..
T Consensus 365 ~~~~~--~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 365 SGSRS--QW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp SSCHH--HH-HTCBCCCCC-------
T ss_pred CCcee--eh-hhhhccCCCCEEEeCC
Confidence 87542 11 3566778888887754
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.40 E-value=0.0011 Score=69.69 Aligned_cols=148 Identities=13% Similarity=-0.004 Sum_probs=91.0
Q ss_pred cchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc-ccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhc
Q 047503 175 GIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY-VMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLT 253 (920)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 253 (920)
|-++.++.+...+..+. .+.+.++|+.|+||||+|+.+.+... .........++..+......+.++++++.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~- 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS- 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC-
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc-
Confidence 34556777777777665 67899999999999999999876311 111122234454332111122234444433211
Q ss_pred cCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccch-hhhhhcccCCcc
Q 047503 254 GQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHK-AVADFCKQSSFV 330 (920)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~ 330 (920)
+ ..+++-++|+|+++.. +..+.+...+-.....+.+|++|.+. .+...+.+
T Consensus 78 ----p------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S---- 131 (305)
T 2gno_A 78 ----P------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS---- 131 (305)
T ss_dssp ----C------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT----
T ss_pred ----c------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc----
Confidence 0 1245678999999865 45666777766666677777776544 33332322
Q ss_pred ceeecCCCCHHHHHHHHHHHh
Q 047503 331 QVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 331 ~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
+.+++.++++++..+.+.+..
T Consensus 132 R~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 RVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TSEEEECCCCHHHHHHHHHHH
T ss_pred eeEeCCCCCHHHHHHHHHHHh
Confidence 278999999999999888775
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.38 E-value=0.01 Score=63.46 Aligned_cols=174 Identities=20% Similarity=0.239 Sum_probs=94.6
Q ss_pred CccccchhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
+.++|.+..++.+...+... ......+.|+|+.|+||||||+.+++. ....| ...-+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~~---------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVLV---------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTCC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHhc----------
Confidence 46789888788777666532 223467899999999999999999884 22111 111111100
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--hhhHHHHhccCCC--------C----------
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--LWGDVEHALLDNK--------K---------- 307 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~--------~---------- 307 (920)
...++...+ ..+ .++-++++|++.... ..+.+...+.... .
T Consensus 89 -----------------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 -----------------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp -----------------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C
T ss_pred -----------------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 011111111 112 234577788886542 2333322221110 0
Q ss_pred CcEEE-EEccchhhhhhcccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHHH
Q 047503 308 GSRIM-LTTRHKAVADFCKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVAV 385 (920)
Q Consensus 308 gs~ii-vTtR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~~ 385 (920)
...++ .|++...+...+..- ......+++.+.++-.+++.+.+.... . .-..+.+..|+++++|.|-.+..+
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR-~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSR-FGIILELDFYTVKELKEIIKRAASLMD--V---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHTT--C---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHHh-cCceeeCCCCCHHHHHHHHHHHHHHcC--C---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 11222 345444333222211 113578999999999999988764321 1 122456888999999999654433
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=3.8e-05 Score=78.73 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred cCcccCceeeecCCCcccc---CccccCCCCCcEEeecCCcccccchhhcccc--cCCeEeecccC
Q 047503 598 GNLFHLHYLSVRNTKVKVL---PKSIGRLLNLQTLDLKHSLVTQLPVEIKNLK--KLRYLLVYHSD 658 (920)
Q Consensus 598 ~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~ 658 (920)
.++++|+.|+|++|.+..+ |..+.++++|++|+|++|.+..+. .+..+. +|++|++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 4577888888888887754 355667888888888888887663 344444 78888888874
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.34 E-value=0.0015 Score=73.42 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
..++|.+..+++|.+++... .....-|.|+|.+|+|||++|+.+++. .... .+.++. .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~------~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLING------P 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEH------H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEc------h
Confidence 46899999999998877532 123456889999999999999999874 2221 222332 1
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc-------------hhhhHHHHhccC--
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI-------------ELWGDVEHALLD-- 304 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~-- 304 (920)
++. .. ........+...+...-.+++.+|+||+++.. .....+...+..
T Consensus 273 ~l~--------~~--------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 273 EIM--------SK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp HHH--------TS--------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred Hhh--------hh--------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 111 11 00011123334444445567889999999422 112233333332
Q ss_pred CCCCcEEEEEccchh-hhhhccc-CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc-hHH
Q 047503 305 NKKGSRIMLTTRHKA-VADFCKQ-SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL-PLA 381 (920)
Q Consensus 305 ~~~gs~iivTtR~~~-v~~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl-Pla 381 (920)
...+..||.||.... +...... ..+...+.+...+.++-.+++...+..... ..... ...+++.+.|. +-.
T Consensus 337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l--~~~~~----l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD----LEQVANETHGHVGAD 410 (489)
T ss_dssp TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB--CTTCC----HHHHHHTCTTCCHHH
T ss_pred cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC--cchhh----HHHHHHHccCCcHHH
Confidence 233456666666553 2222222 223357899999999999999887643321 11112 34566677775 444
Q ss_pred HHHH
Q 047503 382 IVAV 385 (920)
Q Consensus 382 i~~~ 385 (920)
+..+
T Consensus 411 L~~L 414 (489)
T 3hu3_A 411 LAAL 414 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.0014 Score=72.99 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=97.2
Q ss_pred CccccchhhHHHHHHHHh---cC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLV---NG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
.+++|.++.++++.+.+. .. -...+-|.|+|++|+||||||+.+++. .... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 478999988777765543 21 011234789999999999999999884 2222 223333221110
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch----------------hhhHHHHhcc-
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE----------------LWGDVEHALL- 303 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~- 303 (920)
............+.....+.+.+|+||+++... ....+...+.
T Consensus 89 --------------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 89 --------------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred --------------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 000011222333444445678999999996531 1222332222
Q ss_pred -CCCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 304 -DNKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 304 -~~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
....+..||.||...+... . .....+...+.+++.+.++-.+++..++....- ..... ...|++.+.|..
T Consensus 149 ~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 149 FDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp SCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCC
T ss_pred cCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhh----HHHHHHhcCCCc
Confidence 1234567777777664432 2 222233457888888888888888776643211 11111 344677788876
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.002 Score=70.50 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHHh----cC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLV----NG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~----~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+.+. .. -+..+-|.++|++|.|||.||+.+++. .... .+.|+.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh--
Confidence 578899999988876643 21 134678899999999999999999985 2222 23333221100
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHH-HhcCCcEEEEEEcCCCc-------h-----h----hhHHHHhc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQ-YLHDKNYMIVLDDVWKI-------E-----L----WGDVEHAL 302 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~-------~-----~----~~~l~~~l 302 (920)
.....+ ......+.. .-...+++|++|+++.. . . ...+...+
T Consensus 254 --------------------~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 254 --------------------MYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp --------------------SCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred --------------------cccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 000001 122222222 22346899999998642 0 1 11233333
Q ss_pred cC--CCCCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 303 LD--NKKGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 303 ~~--~~~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
.. ...+-.||.||....... ++ .....+..+.++.-+.++-.++|+.+...... ...-+ ...|++.+.|.
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDIN----WQELARSTDEF 386 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCC----HHHHHHHCSSC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCC----HHHHHHhCCCC
Confidence 32 223456666776654332 22 22234467889888888888888776543221 11112 35567778775
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0051 Score=66.50 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHHhc----C-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN----G-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+.+.- . -...+-|.++|++|.|||.||+.+++. ....| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 4678899888888766532 1 124578999999999999999999985 22222 2233221100
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHH-HhcCCcEEEEEEcCCCc--------h----h----hhHHHHhc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQ-YLHDKNYMIVLDDVWKI--------E----L----WGDVEHAL 302 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~--------~----~----~~~l~~~l 302 (920)
.....+ +.....+.. .-...+++|++|+++.. . . ...+...+
T Consensus 255 --------------------k~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 255 --------------------KYLGDG-PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp --------------------SSSSHH-HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred --------------------ccCchH-HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 000001 122222222 22356899999999743 0 1 11222222
Q ss_pred c--CCCCCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCc
Q 047503 303 L--DNKKGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGL 378 (920)
Q Consensus 303 ~--~~~~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~gl 378 (920)
. ....+..||.||-..+... ++ .....+..+.+..-+.++-.++|..+.....- ....+ ...|++.+.|.
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVN----LETLVTTKDDL 387 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCC----HHHHHHHCCSC
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCC----HHHHHHhCCCC
Confidence 2 2233456677776554432 22 22233466888888888888888877643321 11112 35566777775
No 220
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.28 E-value=0.00054 Score=77.11 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=79.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC-----CCc--eEEEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH-----FDC--RAWITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~--~~wv~v~~~~~~~~~~~ 243 (920)
+.++||+.+++++++.|.... ..-+.|+|.+|+|||++|+.+++. +... +.. ++.++.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC----------
Confidence 469999999999999998754 234579999999999999998874 2111 111 1222222
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhh--
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVA-- 321 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-- 321 (920)
....+ ... ..+...+...-..++.+|++| ...+....+...+. ....++|.+|......
T Consensus 246 ---~~~~g--------~~e----~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 ---TKYRG--------EFE----DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp ------------------C----TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred ---ccccc--------hHH----HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 00000 000 111222222223567889999 22222222222222 1235666666554411
Q ss_pred ----hhcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 322 ----DFCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 322 ----~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
..... ...++.+.+.+.++..+++....
T Consensus 307 ~~~~~al~~--Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALER--RFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHH--SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHH--hCccceeCCCCHHHHHHHHHHHH
Confidence 11111 11568999999999999998765
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0032 Score=68.87 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCccccchhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVN-----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
-+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+.+++. ...+ .+.|+.+.-.+.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~~ 245 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVHK 245 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhcc
Confidence 35788999999988776642 1134577899999999999999999985 3222 233333221110
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hh----hhHHHHhc
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------EL----WGDVEHAL 302 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l 302 (920)
....+...+...+...-...+++|++|+++.. .. ...+...+
T Consensus 246 ----------------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~l 303 (428)
T 4b4t_K 246 ----------------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQM 303 (428)
T ss_dssp ----------------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHH
T ss_pred ----------------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHh
Confidence 00001122222222222456899999998531 01 12222222
Q ss_pred c--CCCCCcEEEEEccchhhh-hh-cccCCccceeecCCCCHHH-HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCC
Q 047503 303 L--DNKKGSRIMLTTRHKAVA-DF-CKQSSFVQVHELEALPAVE-AWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGG 377 (920)
Q Consensus 303 ~--~~~~gs~iivTtR~~~v~-~~-~~~~~~~~~~~l~~L~~~~-~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~g 377 (920)
. ....+-.||.||...+.. .+ ......+..+++..++..+ -..+|..+.....- ....+ ...|++++.|
T Consensus 304 dg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~d----l~~lA~~t~G 377 (428)
T 4b4t_K 304 DGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEAD----LDSLIIRNDS 377 (428)
T ss_dssp HHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCC----HHHHHHHTTT
T ss_pred hCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHHCCC
Confidence 2 223455677777655432 22 2222233567786665544 45566655433211 11112 3566777777
Q ss_pred c
Q 047503 378 L 378 (920)
Q Consensus 378 l 378 (920)
.
T Consensus 378 ~ 378 (428)
T 4b4t_K 378 L 378 (428)
T ss_dssp C
T ss_pred C
Confidence 6
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.27 E-value=0.001 Score=68.82 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=34.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|.+..+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999999988877642212345779999999999999999875
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.25 E-value=0.00085 Score=71.28 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=43.1
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR 234 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 234 (920)
..++|.+..++.+...+... ......+.++|..|+||||+|+.+++. ....-...+.+..+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccc
Confidence 35789999988888877652 112468999999999999999999874 222222345555543
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.19 E-value=0.00052 Score=71.19 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=81.9
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLVN----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.+..++.+.+.+.. +....+-+.|+|.+|+|||+||+.+++. ....|- .+..+.-.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~~-- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIEM-- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTTS--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHHh--
Confidence 5789999888888776541 1111234779999999999999999884 222221 1111110000
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-----------------hhhHHHHhcc
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-----------------LWGDVEHALL 303 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~ 303 (920)
.. +.. .... . ..+......++.+|++|+++... ....+...+.
T Consensus 84 --------~~---~~~----~~~~--~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 84 --------FV---GLG----ASRV--R---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp --------CS---SSC----SSSS--S---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred --------hc---chH----HHHH--H---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 00 000 0000 1 11222223467899999996531 1222332222
Q ss_pred C---CCCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHhc
Q 047503 304 D---NKKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKAF 352 (920)
Q Consensus 304 ~---~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 352 (920)
. ......||.||....... . .........+.+.+.+.++..+++...+.
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2 112346677776554211 1 11112235678888888888888877653
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.11 E-value=0.0037 Score=75.27 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---cc-CCCCceEEE-EeCCCCCHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQY---VM-NHFDCRAWI-TVGRECMKKDLLIKM 245 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~-~~F~~~~wv-~v~~~~~~~~~~~~i 245 (920)
+.++||+.+++++++.|.... ..-+.|+|.+|+||||+|+.+++... +. ..+.+.+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 468999999999999997754 34567999999999999999887411 00 011223331 11100
Q ss_pred HHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCc--------hhhh--HHHHhccCCCCCcEEEEE
Q 047503 246 IKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKI--------ELWG--DVEHALLDNKKGSRIMLT 314 (920)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~--------~~~~--~l~~~l~~~~~gs~iivT 314 (920)
+.. . .... ........+.+.+ ..++.+|++|+++.. ...+ .+...+... .+..+|.+
T Consensus 254 ---~~~---~----~~~g-~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~a 321 (758)
T 1r6b_X 254 ---LAG---T----KYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGS 321 (758)
T ss_dssp ----CC---C----CCSS-CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEE
T ss_pred ---hcc---c----cccc-hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEE
Confidence 000 0 0011 1222223333333 346789999999754 1111 122222222 34566666
Q ss_pred ccchhhhhhccc----CCccceeecCCCCHHHHHHHHHHHh
Q 047503 315 TRHKAVADFCKQ----SSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 315 tR~~~v~~~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
|........... ......+.+.+.+.++..+++....
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 665443211110 0111468899999999888887654
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.09 E-value=0.0034 Score=66.12 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46889999999998888653222345779999999999999999874
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.07 E-value=0.002 Score=68.25 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcC------------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG------------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.+..++.+...+... .....-+.|+|.+|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998887641 112456779999999999999999874
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.02 E-value=0.0049 Score=72.81 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=99.9
Q ss_pred CCccccchhhHHHHHHHHhc----C-------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVN----G-------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
-+++.|.++.+++|.+++.- . -..++-|.++|++|.|||+||+.+++. ...+ .+.|+.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhH-----
Confidence 35688999999888776532 1 124678999999999999999999985 2222 2333321
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch--------h-hh----HHHHhccC-
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE--------L-WG----DVEHALLD- 304 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------~-~~----~l~~~l~~- 304 (920)
+ +... ........+...+...-...+.+|++|+++... . -. .+...+..
T Consensus 273 -~--------l~sk--------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 273 -E--------IMSK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp -H--------HHSS--------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC
T ss_pred -H--------hhcc--------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc
Confidence 1 1111 011112333344444445678999999997531 1 11 12222211
Q ss_pred -CCCCcEEEEEccchh-hhhhccc-CCccceeecCCCCHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCch
Q 047503 305 -NKKGSRIMLTTRHKA-VADFCKQ-SSFVQVHELEALPAVEAWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLP 379 (920)
Q Consensus 305 -~~~gs~iivTtR~~~-v~~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glP 379 (920)
...+..||.||...+ +-..... ..+...+++..-+.++-.++|..+...... ....+ ...|++++.|.-
T Consensus 336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~--~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE--CTTCC----HHHHHHHCCSCC
T ss_pred cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHhcCCCC
Confidence 122345555665543 3222222 234467899988998888998876533211 11112 456777888774
No 229
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.02 E-value=0.0066 Score=68.02 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=36.2
Q ss_pred CccccchhhHHHHH---HHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILI---GWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|.++.++.+. +++..+....+-+.++|++|+|||++|+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 67999999888654 444444333466889999999999999998874
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.00 E-value=0.0013 Score=79.03 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=80.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCc---cccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQ---YVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
+.++||+++++++++.|.... ..-+.++|.+|+|||++|+.+++.- .+.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 469999999999999998754 2346799999999999999987741 0111111111222211
Q ss_pred HHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhh------h
Q 047503 248 EFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAV------A 321 (920)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v------~ 321 (920)
+... .++.. ..+...+...-..++.+|++| ...+....+...+. ....++|.||..... .
T Consensus 245 --g~~~----~G~~e----~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --GTKY----RGEFE----DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp --------------C----TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred --cccc----cchHH----HHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000 00000 112223333334677899999 22222122222222 223566666665442 1
Q ss_pred hhcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 322 DFCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
..... ....+.+++.+.++..+++....
T Consensus 311 ~al~r--Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALER--RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHH--SEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHh--hCcEEEeCCCCHHHHHHHHHHHH
Confidence 11111 11568999999999999998654
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.84 E-value=0.002 Score=59.73 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVG 233 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~ 233 (920)
-..+.|+|..|+|||||++.+++..... .+ .++++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 4588999999999999999998852221 11 25666543
No 232
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.013 Score=64.10 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=28.6
Q ss_pred hhhhccCCeeeEEEccCCCCCcCcc-cccCcccCceeeecCCCccccCccccCCCCCcEEeecC
Q 047503 571 TKLVAEFKLMKVLDFEDAPIEFLPE-EVGNLFHLHYLSVRNTKVKVLPKSIGRLLNLQTLDLKH 633 (920)
Q Consensus 571 ~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 633 (920)
...|.+|.+|+.++|..+ ++.++. .+.++ .|..+.+.. .+..++.......+|+.+.+..
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 345666666666666432 443332 23333 355554433 2444443332333566666643
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0025 Score=76.61 Aligned_cols=153 Identities=17% Similarity=0.231 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 047503 171 DEVVGIESARDILIGWLVNGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLI 243 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (920)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 468999999999988886421 12347999999999999999999874 2222223444444321110
Q ss_pred HHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc--hhhhHHHHhccC-----------CCCCcE
Q 047503 244 KMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI--ELWGDVEHALLD-----------NKKGSR 310 (920)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~gs~ 310 (920)
.......+...++ ....-+|+||+++.. +....+...+.. .....+
T Consensus 564 ------------------~~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 564 ------------------HSTSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp ------------------CCCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred ------------------cccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 0000111122222 123458999999765 334444444332 123568
Q ss_pred EEEEccchh-----h----hhhccc---CCccceeecCCCCHHHHHHHHHHHh
Q 047503 311 IMLTTRHKA-----V----ADFCKQ---SSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 311 iivTtR~~~-----v----~~~~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
||+||.... + ...... ......+.+.+++.++...++....
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 888887311 1 111111 1112578888888888777776543
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.71 E-value=0.011 Score=60.54 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=79.0
Q ss_pred CccccchhhHHHHHHHHh---cC------C-CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 047503 171 DEVVGIESARDILIGWLV---NG------R-KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKD 240 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~---~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (920)
++++|.++.+.++.+... .. . .-.+-+.|+|..|+||||||+.++... . ...+.+.. .+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~------~~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASG------SD 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEH------HH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeH------HH
Confidence 468898877666654432 11 0 001238999999999999999998742 2 12233321 11
Q ss_pred HHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hhh----hHHHHhccC
Q 047503 241 LLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------ELW----GDVEHALLD 304 (920)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~~----~~l~~~l~~ 304 (920)
+. ... .......+...++..-.....++++|+++.. ..+ ..+...+..
T Consensus 85 ~~--------~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g 148 (254)
T 1ixz_A 85 FV--------EMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 148 (254)
T ss_dssp HH--------HSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred HH--------HHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC
Confidence 11 000 0000011112222222235689999999432 111 223233332
Q ss_pred CC--CCcEEEEEccchhhhh-hc-ccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 305 NK--KGSRIMLTTRHKAVAD-FC-KQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 305 ~~--~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
.. ....++.||....+.. .. ....+...+.++..+.++-.+++...+
T Consensus 149 ~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 149 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 22 2234455665554432 11 112234678899889888888887765
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.66 E-value=0.014 Score=65.44 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=83.7
Q ss_pred CCccccchhhHHHHHHHHh---cCC-------CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 170 DDEVVGIESARDILIGWLV---NGR-------KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
-++++|.++.+.++.+... ... .-.+-+.|+|..|+||||||+.++.. ... ..+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH--
Confidence 3578999887777655442 210 01233899999999999999999874 221 233333321000
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcC----CcEEEEEEcCCCc------------hhh----hHHH
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHD----KNYMIVLDDVWKI------------ELW----GDVE 299 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~----kr~LlVlDdv~~~------------~~~----~~l~ 299 (920)
.........++..++. .+.++++|+++.. +.+ ..+.
T Consensus 103 ------------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL 158 (499)
T 2dhr_A 103 ------------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 158 (499)
T ss_dssp ------------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH
T ss_pred ------------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH
Confidence 0001122334444432 3479999999542 111 2233
Q ss_pred HhccCC--CCCcEEEEEccchhhhh--hcccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 300 HALLDN--KKGSRIMLTTRHKAVAD--FCKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 300 ~~l~~~--~~gs~iivTtR~~~v~~--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
..+... ..+..++.||....+.. ......+...+.+...+.++-.+++..++
T Consensus 159 ~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 159 VEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp HHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred HHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 333322 23445666776665432 11222234678888888888888887665
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.60 E-value=0.029 Score=57.85 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHHhc---C-------C-CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 171 DEVVGIESARDILIGWLVN---G-------R-KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~---~-------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
+++.|.++.+++|.+.+.. . . .-.+-+.|+|++|.||||||+.++... .. ..+++....-.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhhh
Confidence 4678888888888765421 0 0 111228999999999999999998742 11 23444432211100
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHh-cCCcEEEEEEcCCCch-------------hhhHHHHhccCC
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYL-HDKNYMIVLDDVWKIE-------------LWGDVEHALLDN 305 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~ 305 (920)
.. ........+.+.. ...+.++++|+++... ....+...+..+
T Consensus 85 ----------------------~~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg 141 (274)
T 2x8a_A 85 ----------------------VG-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL 141 (274)
T ss_dssp ----------------------TH-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC
T ss_pred ----------------------hh-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc
Confidence 00 0011111122221 3457899999996521 111222223322
Q ss_pred --CCCcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 306 --KKGSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 306 --~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
....-++.+|....+.. . ......+..+.++..+.++-.++|....
T Consensus 142 ~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 142 EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 22345556666665432 1 1222334678898889988888888765
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.48 E-value=0.01 Score=61.58 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=79.9
Q ss_pred CCccccchhhHHHHHHHHhc---C------C-CCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 047503 170 DDEVVGIESARDILIGWLVN---G------R-KQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK 239 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~---~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (920)
-++++|.++.++++.+.... . . .-.+-+.|+|..|+||||||+.++... . ...+.+.. .
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~------~ 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASG------S 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEH------H
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecH------H
Confidence 35788988777766554321 0 0 001228899999999999999998742 2 22333332 1
Q ss_pred HHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCc------------hhhh----HHHHhcc
Q 047503 240 DLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKI------------ELWG----DVEHALL 303 (920)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~~~----~l~~~l~ 303 (920)
++.. .. .......+...++..-.....++|+|+++.. +.+. .+...+.
T Consensus 108 ~~~~----~~------------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 108 DFVE----MF------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp HHHH----ST------------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred HHHH----HH------------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 1110 00 0000011112222222245689999999531 1122 2222233
Q ss_pred CCCC--CcEEEEEccchhhhh-h-cccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 304 DNKK--GSRIMLTTRHKAVAD-F-CKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 304 ~~~~--gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
.... ...++.||....+.. . .....+...+.+...+.++-.+++...+
T Consensus 172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2221 234445555554332 1 1112234678898889988888887765
No 238
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.04 Score=60.04 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=65.3
Q ss_pred CCeeEEEEecCcc--ccccccCCCCceEEEeeccCCCCcchhhhhhccCCeeeEEEccCCCCCcCcccccCcccCceeee
Q 047503 531 TKTRRISINQSLN--NVLEWTEDSKIRSVFFLNVDKLPGSFMTKLVAEFKLMKVLDFEDAPIEFLPEEVGNLFHLHYLSV 608 (920)
Q Consensus 531 ~~~r~lsl~~~~~--~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 608 (920)
.+++.+.+..+-. ......++.+|+++.+-..- ..+-...|..++ |..+.+.. .+..++...-...+|+.+.+
T Consensus 46 ~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~v---~~Ig~~aF~~c~-l~~i~~~~-~l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNSGITSIGEANFNSCYNMTKVTVASTV---TSIGDGAFADTK-LQSYTGME-RVKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGCSEEEECTTEEEECTTTTTTCTTCCEEEECTTC---CEECTTTTTTCC-CCEEEECT-TCCEECTTTTTTCCCSEEEC
T ss_pred cCCEEEEeCCCccChHHHHhhCCCCCCEEEeCCcc---eEechhhhcCCC-CceEECCc-eeeEeccceeccCCcccccC
Confidence 4567777765533 22345677888888774321 234445677774 55555543 24444433223347888888
Q ss_pred cCCCccccCccccCCCCCcEEeecCCcccccc-hhhcccccCCeEeecc
Q 047503 609 RNTKVKVLPKSIGRLLNLQTLDLKHSLVTQLP-VEIKNLKKLRYLLVYH 656 (920)
Q Consensus 609 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 656 (920)
..+ +..+......-.+|+.+.+..+ ++.+. ..+..+.+|..+.+..
T Consensus 121 p~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred CCc-cccccccccccceeeeeeccce-eeccccchhccccccccccccc
Confidence 764 4444444333346666666543 33332 2356677777776654
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0038 Score=64.89 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe--CCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV--GRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLII 271 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 271 (920)
-+++.|+|++|+||||||.++... .-..++|++. .+..+. ...+.+....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------------~~~~le~~l~ 174 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------------YNTDFNVFVD 174 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------------CBCCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------------hhcCHHHHHH
Confidence 467889999999999999999874 1124667777 322110 0023455666
Q ss_pred HHHHHhcCCcEEEEEEcCCCc
Q 047503 272 AVRQYLHDKNYMIVLDDVWKI 292 (920)
Q Consensus 272 ~l~~~L~~kr~LlVlDdv~~~ 292 (920)
.+.+.+.+.+ +||+|++...
T Consensus 175 ~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 175 DIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHHHHCS-EEEEECCTTT
T ss_pred HHHHHHhhCC-EEEEeccccc
Confidence 6677776666 9999999643
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.29 E-value=0.017 Score=65.99 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhc----CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVN----GRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++|.++-++.+.+.+.- ..-...++.++|.+|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4688988888887665432 1223568999999999999999999874
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.02 Score=68.81 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=87.5
Q ss_pred CCccccchhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVN-----------GRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
-++++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.+.+. ....| +.++.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch-----
Confidence 35789999999999888753 1123457899999999999999999874 22222 233221
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch-------------hhhHHHHhccCC
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE-------------LWGDVEHALLDN 305 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~ 305 (920)
+ +... ........+...+.........++++|+++... ....+...+...
T Consensus 273 -~--------l~~~--------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~ 335 (806)
T 1ypw_A 273 -E--------IMSK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp -H--------HSSS--------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS
T ss_pred -H--------hhhh--------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh
Confidence 1 1000 000011222333334444567899999995321 112222222221
Q ss_pred --CCCcEEEEEccchh-hhhhccc-CCccceeecCCCCHHHHHHHHHHHhc
Q 047503 306 --KKGSRIMLTTRHKA-VADFCKQ-SSFVQVHELEALPAVEAWRLFCRKAF 352 (920)
Q Consensus 306 --~~gs~iivTtR~~~-v~~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~ 352 (920)
..+..+|.||.... +...... ......+.+...+.++-.+++...+-
T Consensus 336 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 23445666666543 2222211 12225678888889998888887653
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.28 E-value=0.0027 Score=66.99 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=36.4
Q ss_pred chhhHHHHHHHHhcCCC-CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEe
Q 047503 176 IESARDILIGWLVNGRK-QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITV 232 (920)
Q Consensus 176 r~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 232 (920)
+....+.+.+++...++ ....+.|+|..|+|||+||+.+++.... ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 34455566677765322 2467889999999999999999985220 22234555554
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.16 E-value=0.033 Score=66.88 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.+..++.+...+... ......+.++|..|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999998888777531 123457899999999999999999874
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.07 E-value=0.018 Score=57.19 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=52.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhcc---CC-ccccCCcCC-HHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTG---QS-ALGEMNNME-EKD 268 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~-~~~~~~~~~-~~~ 268 (920)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+. .+.+.++.... .. ......... ..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46999999999999999999876 112468888877655655443 23322211000 00 000111111 133
Q ss_pred HHHHHHHHhcCCcEEEEEEcCCC
Q 047503 269 LIIAVRQYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 269 l~~~l~~~L~~kr~LlVlDdv~~ 291 (920)
....++..+..+.-+||+|.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 45555555544567999998754
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.66 E-value=0.026 Score=60.23 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=57.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
.-+++.|.|.+|+||||||.+++.. ....=..++|++....++.. .++.++.....-. -....+.++....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~--i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLL--ISQPDHGEQALEI 130 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCE--EECCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhh--hhhccCHHHHHHH
Confidence 3579999999999999999998874 22222357899887777654 4455543311100 1122345666666
Q ss_pred HHHHhc-CCcEEEEEEcCCC
Q 047503 273 VRQYLH-DKNYMIVLDDVWK 291 (920)
Q Consensus 273 l~~~L~-~kr~LlVlDdv~~ 291 (920)
+...++ .+.-++|+|.+-.
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTT
T ss_pred HHHHhhhcCCCeEEehHhhh
Confidence 666664 4556899999743
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.66 E-value=0.049 Score=66.20 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.+..++.+...+... ......+.|+|..|+|||++|+.+.+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999988877542 112468899999999999999999874
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.64 E-value=0.042 Score=52.67 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHHHHHHHHhhhc---cCCccccCCc-----
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE---CMKKDLLIKMIKEFHQLT---GQSALGEMNN----- 263 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~i~~~l~~~~---~~~~~~~~~~----- 263 (920)
..|.|++..|.||||+|--..-. ..++=..+.++...+. .....+ ++.+.... +... .+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf--~~~~~~~~~ 100 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGF--TWETQNREA 100 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTC--CCCGGGHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEccccc--ccCCCCcHH
Confidence 46777777889999999776553 2233234555544332 122222 33331000 0000 0000
Q ss_pred --CCHHHHHHHHHHHhcCCcE-EEEEEcCCC-----chhhhHHHHhccCCCCCcEEEEEccch
Q 047503 264 --MEEKDLIIAVRQYLHDKNY-MIVLDDVWK-----IELWGDVEHALLDNKKGSRIMLTTRHK 318 (920)
Q Consensus 264 --~~~~~l~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~iivTtR~~ 318 (920)
..........++.+.+.+| |||||++-. .-..+++...+........||+|+|..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 0112334456666666555 999999832 234455666666666678899999986
No 248
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.39 E-value=0.03 Score=56.11 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCcc------c--------
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSAL------G-------- 259 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~------~-------- 259 (920)
-.++.|+|.+|+|||||++.++.... ..=..++|+.... ....+...+ ..++........ .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 36899999999999999999875421 1112466766533 333333322 232211100000 0
Q ss_pred --cCCcCCHHHHHHHHHHHhcC-Cc--EEEEEEcCCC-----chhhhHHHHhccC--CCCCcEEEEEccch
Q 047503 260 --EMNNMEEKDLIIAVRQYLHD-KN--YMIVLDDVWK-----IELWGDVEHALLD--NKKGSRIMLTTRHK 318 (920)
Q Consensus 260 --~~~~~~~~~l~~~l~~~L~~-kr--~LlVlDdv~~-----~~~~~~l~~~l~~--~~~gs~iivTtR~~ 318 (920)
.....+..++...+.+.+.. +. .+||+|.+-. ......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00122556666666665532 33 4999999852 2222333333321 13477888888765
No 249
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.35 E-value=0.11 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999865
No 250
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.30 E-value=0.028 Score=56.77 Aligned_cols=96 Identities=10% Similarity=0.129 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHHhhhcc---CCccccCCcCCH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMN----HFDCRAWITVGRECMKKDLLIKMIKEFHQLTG---QSALGEMNNMEE 266 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~ 266 (920)
-.++.|+|.+|+||||||+.+........ .-..++|++....+....+ ..+++.++.... +... -....+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVA-YARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEE-EEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeE-EEecCCH
Confidence 46999999999999999999876311111 2357899988766555443 233343322100 0000 0011222
Q ss_pred HH---HHHHHHHHhc-CCcEEEEEEcCCC
Q 047503 267 KD---LIIAVRQYLH-DKNYMIVLDDVWK 291 (920)
Q Consensus 267 ~~---l~~~l~~~L~-~kr~LlVlDdv~~ 291 (920)
.+ ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2333555554 3567889998853
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.29 E-value=0.011 Score=58.21 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 179 ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.++|.+.+....+...+|+|+|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555443334689999999999999999998763
No 252
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.28 E-value=0.014 Score=61.04 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999985
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.22 E-value=0.018 Score=56.35 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHhcC-CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 176 IESARDILIGWLVNG-RKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 176 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
|++.++.|.+.+... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566778888888764 23468999999999999999999876
No 254
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.15 E-value=0.093 Score=52.68 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++|+|..|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998663
No 255
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.08 E-value=0.0077 Score=58.09 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=57.4
Q ss_pred hhhhhccCCeeeEEEccCC-CCC-----cCcccccCcccCceeeecCCCcc-----ccCccccCCCCCcEEeecCCcccc
Q 047503 570 MTKLVAEFKLMKVLDFEDA-PIE-----FLPEEVGNLFHLHYLSVRNTKVK-----VLPKSIGRLLNLQTLDLKHSLVTQ 638 (920)
Q Consensus 570 ~~~~~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~ 638 (920)
+..++.+-+.|+.|+|+++ .+. .+-+.+..-.+|+.|+|++|.+. .|-..+..-+.|++|+|++|.|+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3445566678888888875 664 23445556677888888888776 344455566778888888887762
Q ss_pred -----cchhhcccccCCeEeeccc
Q 047503 639 -----LPVEIKNLKKLRYLLVYHS 657 (920)
Q Consensus 639 -----lp~~i~~l~~L~~L~l~~~ 657 (920)
+...+..-..|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 3334445556777777653
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.07 E-value=0.23 Score=52.98 Aligned_cols=155 Identities=8% Similarity=-0.052 Sum_probs=95.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
.+++.++|..|.||++.|+.+.+.. ....|+....+.+....++.+ +...+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------------l~~~~ 68 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWNA----------------------------IFSLC 68 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHHH----------------------------HHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHHH----------------------------HHHHh
Confidence 5799999999999999999887641 122343222222332233322 22222
Q ss_pred HH-HhcCCcEEEEEEcCCC---chhhhHHHHhccCCCCCcEEEEEccc-------hhhhhhcccCCccceeecCCCCHHH
Q 047503 274 RQ-YLHDKNYMIVLDDVWK---IELWGDVEHALLDNKKGSRIMLTTRH-------KAVADFCKQSSFVQVHELEALPAVE 342 (920)
Q Consensus 274 ~~-~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~~~~~~~~~~~l~~L~~~~ 342 (920)
.. -+-+++-++|+|+++. .+.++.+...+.....++.+|++|.. ..+...+...+ ..++..+++.++
T Consensus 69 ~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~--~~~~~~~l~~~~ 146 (343)
T 1jr3_D 69 QAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS--VQVTCQTPEQAQ 146 (343)
T ss_dssp HHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC--EEEEECCCCTTH
T ss_pred cCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc--eEEEeeCCCHHH
Confidence 11 1235677889999865 35677788777766667777776643 23333333222 678999999999
Q ss_pred HHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhCCchHHHHH
Q 047503 343 AWRLFCRKAFASVSDGGCPPELEKLSHEIVAKCGGLPLAIVA 384 (920)
Q Consensus 343 ~~~Lf~~~~~~~~~~~~~~~~l~~~~~~I~~~c~glPlai~~ 384 (920)
....+.+.+....- .--.+.+..+++.++|...++..
T Consensus 147 l~~~l~~~~~~~g~-----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQLNL-----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHTTC-----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CCCHHHHHHHHHHhchHHHHHHH
Confidence 88887776643211 11235677888899998876654
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.05 E-value=0.045 Score=58.76 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=55.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
-.++.|.|.+|+||||||.++.... ...-..++|++....++.. .++.++..... .. -....+.+++...+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~-l~-i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDE-LL-VSQPDNGEQALEIM 144 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGG-CE-EECCSSHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHH-ce-eecCCcHHHHHHHH
Confidence 4688899999999999999887642 2222478999998877654 13333322110 00 01112456666777
Q ss_pred HHHhcC-CcEEEEEEcCC
Q 047503 274 RQYLHD-KNYMIVLDDVW 290 (920)
Q Consensus 274 ~~~L~~-kr~LlVlDdv~ 290 (920)
+...+. ..-+||+|.+-
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 766654 44699999984
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.02 E-value=0.3 Score=48.63 Aligned_cols=61 Identities=7% Similarity=-0.018 Sum_probs=35.9
Q ss_pred CcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhc-cCCCCCcEEEEEccchhhhh
Q 047503 262 NNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHAL-LDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 262 ~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l-~~~~~gs~iivTtR~~~v~~ 322 (920)
...+..+.+. .+...|-.++=+++||..-.. ..-..+...+ .....|..||++|.+...+.
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 3555554433 455566677778999997543 2233444432 33334677888888876554
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.00 E-value=0.042 Score=58.71 Aligned_cols=89 Identities=18% Similarity=0.113 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
-+++.|.|.+|+||||||.++... ....=..++|++....++.. .++.++.....-. -....+.++....+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~--i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLL--VSQPDTGEQALEIA 131 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCE--EECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeE--EecCCCHHHHHHHH
Confidence 469999999999999999998764 22222468999988777653 2333332211000 01122445666666
Q ss_pred HHHhcC-CcEEEEEEcCCC
Q 047503 274 RQYLHD-KNYMIVLDDVWK 291 (920)
Q Consensus 274 ~~~L~~-kr~LlVlDdv~~ 291 (920)
+...+. +.-+||+|.+-.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 655543 456999999853
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.94 E-value=0.09 Score=56.15 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMN----HFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+. .++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHc
Confidence 457999999999999999999876421211 23478999998887776554 334433
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.84 E-value=0.082 Score=54.67 Aligned_cols=90 Identities=9% Similarity=0.050 Sum_probs=54.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHH-HHHHH
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDL-IIAVR 274 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~l~ 274 (920)
++-|.|.+|+||||||.+++........=..++||+..+.++.. .+++++.....-.- ....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv--~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIH--TPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEE--EECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEE--EcCCCHHHHHHHHHH
Confidence 78999999999999999887642211112468999988888764 25555543211000 111233444 33333
Q ss_pred HH--hc-CCcEEEEEEcCCCc
Q 047503 275 QY--LH-DKNYMIVLDDVWKI 292 (920)
Q Consensus 275 ~~--L~-~kr~LlVlDdv~~~ 292 (920)
.. ++ ++.-+||+|-+-..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 32 33 46789999998543
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.80 E-value=0.046 Score=58.52 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
-+++.|.|.+|+||||||.+++... ...-..++|++....++... +..++..... .. -....+.+++...+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~-l~-i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDN-LL-CSQPDTGEQALEIC 133 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGG-CE-EECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhh-ee-eeCCCCHHHHHHHH
Confidence 4699999999999999999987642 22224689999988776532 3333322100 00 01112345555555
Q ss_pred HHHhc-CCcEEEEEEcCC
Q 047503 274 RQYLH-DKNYMIVLDDVW 290 (920)
Q Consensus 274 ~~~L~-~kr~LlVlDdv~ 290 (920)
+...+ .+.-+||+|.+-
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 55443 445699999984
No 263
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.75 E-value=0.039 Score=58.57 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=54.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHHhhhccC---CccccCCcCCH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMN----HFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQ---SALGEMNNMEE 266 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~ 266 (920)
-.++.|+|.+|+||||||.+++....... .-..++|++....++...+. ++++.++..... ... -....+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~-~~~~~~~ 184 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIY-YIRAINT 184 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEE-EEECCSH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEE-EEeCCCH
Confidence 46999999999999999999876421110 12468999998887776554 334444321100 000 0011122
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEEcCC
Q 047503 267 K---DLIIAVRQYLH--DKNYMIVLDDVW 290 (920)
Q Consensus 267 ~---~l~~~l~~~L~--~kr~LlVlDdv~ 290 (920)
+ ++...+...++ .+.-+||+|.+-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 24445555554 345688888874
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.65 E-value=0.051 Score=57.62 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccC---------CC-----CceEEEEeCCCCCHHHHHHHHHHHHhhhcc---C
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMN---------HF-----DCRAWITVGRECMKKDLLIKMIKEFHQLTG---Q 255 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~ 255 (920)
.-.++.|.|.+|+||||||.+++....... .. ..++|++....++...+.. +++.++.... +
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357999999999999999999875421111 11 4789999988887766553 4454432210 0
Q ss_pred CccccCCcCCHH---HHHHHHHHHhcC--CcEEEEEEcCC
Q 047503 256 SALGEMNNMEEK---DLIIAVRQYLHD--KNYMIVLDDVW 290 (920)
Q Consensus 256 ~~~~~~~~~~~~---~l~~~l~~~L~~--kr~LlVlDdv~ 290 (920)
... -....+.+ ++...+.+.++. +.-+||+|.+-
T Consensus 176 ~l~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTF-VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEE-EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEE-EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 000 00111222 344556666654 44688999874
No 265
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.59 E-value=0.03 Score=58.13 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 191 RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.....+|+|+|..|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999988663
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.48 E-value=0.17 Score=55.25 Aligned_cols=25 Identities=48% Similarity=0.526 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988764
No 267
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.45 E-value=0.22 Score=53.04 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccC--CCCCcEEEEEccchhhhhh
Q 047503 261 MNNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLD--NKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 261 ~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~ 323 (920)
+...+..+.+. .|...|-.++=+|++|..-+. ..-..+...+.. ...|..||++|-+-.++..
T Consensus 161 ~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp TTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34556555443 566777888889999987543 112223333322 1236778888888766543
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.39 E-value=0.18 Score=53.15 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-.++.|.|.+|+||||||.+++.+....+ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 46899999999999999999876522222 578888765 45666766666543
No 269
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.33 E-value=0.27 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999865
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.02 E-value=0.023 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998874
No 271
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.99 E-value=0.065 Score=63.36 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=78.6
Q ss_pred CCccccchhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 047503 170 DDEVVGIESARDILIGWLVNG-----------RKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMK 238 (920)
Q Consensus 170 ~~~~~Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (920)
-.++.|.++.+++|.+.+.-. -...+-|.++|++|.|||.+|+.+++. ... -++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~-----~f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTC-----EEEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCC-----ceEEec----c
Confidence 356778888888877665421 123456789999999999999999985 222 233432 1
Q ss_pred HHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHHHHhcCCcEEEEEEcCCCch------------h----hhHHHHhc
Q 047503 239 KDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVRQYLHDKNYMIVLDDVWKIE------------L----WGDVEHAL 302 (920)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~l 302 (920)
. ++... ....+...+...+...=+..+++|++|+++..- . ...+...+
T Consensus 545 ~--------~l~s~--------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~m 608 (806)
T 3cf2_A 545 P--------ELLTM--------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608 (806)
T ss_dssp H--------HHHTT--------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHH
T ss_pred c--------hhhcc--------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHH
Confidence 1 11111 111122333333333334578999999996530 1 11233223
Q ss_pred cCCC--CCcEEEEEccchh-hhhh-cccCCccceeecCCCCHHHHHHHHHHHh
Q 047503 303 LDNK--KGSRIMLTTRHKA-VADF-CKQSSFVQVHELEALPAVEAWRLFCRKA 351 (920)
Q Consensus 303 ~~~~--~gs~iivTtR~~~-v~~~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 351 (920)
.... .+--||-||-... +-.. ......+..+.+..-+.++-.++|+.+.
T Consensus 609 dg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp HSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred hCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3222 2333443554433 2222 2222334677787666666677776654
No 272
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.97 E-value=0.076 Score=47.59 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=25.0
Q ss_pred EEEccCCCCC--cCcccccCcccCceeeecCCCccccCcc-ccCCCCCcEEeecCC
Q 047503 582 VLDFEDAPIE--FLPEEVGNLFHLHYLSVRNTKVKVLPKS-IGRLLNLQTLDLKHS 634 (920)
Q Consensus 582 ~L~L~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 634 (920)
+++.+++.++ .+|..+ ..+|++|+|++|.|..+|.. +..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555555 555332 22455555555555555443 334555555555544
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.94 E-value=0.027 Score=53.58 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKL 214 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v 214 (920)
.+|.|.|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.94 E-value=0.035 Score=60.06 Aligned_cols=46 Identities=33% Similarity=0.363 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHh-------------cCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 172 EVVGIESARDILIGWLV-------------NGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 172 ~~~Gr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++|.+..++.+...+. ........|.++|.+|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999998888773 11113457889999999999999999884
No 275
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.90 E-value=0.03 Score=59.70 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=83.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
..++|+++.++.+...+..+. -+.++|.+|+|||+||+.+.+. .... ...+..+......++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g------- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIG------- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHE-------
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCC-------
Confidence 367899999999988887643 5789999999999999999874 2222 22334333333332211
Q ss_pred hhccCCccccCCcCCHHHHHHHHHHHhcC--CcEEEEEEcCCCch--hhhHHHHhccC-----------CCCCcEEEEEc
Q 047503 251 QLTGQSALGEMNNMEEKDLIIAVRQYLHD--KNYMIVLDDVWKIE--LWGDVEHALLD-----------NKKGSRIMLTT 315 (920)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~--~~~~l~~~l~~-----------~~~gs~iivTt 315 (920)
........+.. ..-.+ ...++++|+++... ....+...+.. ......||.|+
T Consensus 91 ~~~~~~~~~~~-------------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 91 TMIYNQHKGNF-------------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ 157 (331)
T ss_dssp EEEEETTTTEE-------------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE
T ss_pred ceeecCCCCce-------------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEec
Confidence 00000000000 00001 13589999997652 33333333221 12345566566
Q ss_pred cchh------hhhhcccCCccceeecCCCCHHHHHHHHHHHhcC
Q 047503 316 RHKA------VADFCKQSSFVQVHELEALPAVEAWRLFCRKAFA 353 (920)
Q Consensus 316 R~~~------v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 353 (920)
.... +...... .....+.+.+.+.++-.+++.+....
T Consensus 158 np~~~~~~~~l~~~l~~-Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 158 NPVEQEGTYPLPEAQVD-RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CTTCCSCCCCCCHHHHT-TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCCcccCcccCCHHHHh-heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 5322 1111111 11135889999999999998887643
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.83 E-value=0.026 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.83 E-value=0.034 Score=53.82 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999774
No 278
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.82 E-value=0.047 Score=61.19 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.+..++.+...+..+. -|.|+|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 367899999998888887654 6789999999999999999884
No 279
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.75 E-value=0.093 Score=47.01 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=46.7
Q ss_pred ceeeecCCCcc--ccCccccCCCCCcEEeecCCcccccchh-hcccccCCeEeecccCCCc
Q 047503 604 HYLSVRNTKVK--VLPKSIGRLLNLQTLDLKHSLVTQLPVE-IKNLKKLRYLLVYHSDNGT 661 (920)
Q Consensus 604 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~ 661 (920)
..++.++++++ .+|..+ -.+|++|+|++|.|+.+|.. +..+++|++|+|.+|....
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888888 888765 35799999999999999875 6889999999999986544
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.67 E-value=0.033 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 281
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.66 E-value=0.24 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.++-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5999999999999999999864
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.65 E-value=0.031 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.031 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.62 E-value=1.8 Score=47.93 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIK 247 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (920)
-.++.|.|.+|+||||||..++.+.... .-..++|++... +...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 4699999999999999999987753221 113578877543 45566655543
No 285
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.58 E-value=0.29 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999865
No 286
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.56 E-value=0.023 Score=56.29 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAV 273 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l 273 (920)
-.++.|.|..|+||||++..+... ...+-..++.+.-.... . ....++..++.. .. ...-....++...+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~----~~-~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTS----LP-SVEVESAPEILNYI 81 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCS----SC-CEEESSTHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCC----cc-ccccCCHHHHHHHH
Confidence 478999999999999999888774 32232234444433221 1 111222222111 00 00111234555555
Q ss_pred HHHhcCCcE-EEEEEcCCCc--hhhhHHHHhccCCCCCcEEEEEccchh
Q 047503 274 RQYLHDKNY-MIVLDDVWKI--ELWGDVEHALLDNKKGSRIMLTTRHKA 319 (920)
Q Consensus 274 ~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 319 (920)
.+.+.+.++ +||+|.+... +..+.+ ..+.+ .|..||+|-+..+
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 555544444 9999999654 233333 22222 2678999998543
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.44 E-value=0.11 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+++|+|.+|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998764
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.44 E-value=0.044 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.435 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999874
No 289
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.44 E-value=0.38 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999865
No 290
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.36 E-value=0.28 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999865
No 291
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.35 E-value=0.069 Score=56.38 Aligned_cols=44 Identities=34% Similarity=0.397 Sum_probs=32.5
Q ss_pred ccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 174 VGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++.+.-.+++++.+... ......|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44566677777777532 234567899999999999999988763
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.31 E-value=0.043 Score=52.06 Aligned_cols=23 Identities=48% Similarity=0.733 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.31 E-value=0.26 Score=51.33 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH--HHHHHHHHHHhhhccCCccccCCcCCHHHH-
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKK--DLLIKMIKEFHQLTGQSALGEMNNMEEKDL- 269 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l- 269 (920)
...++.|+|.+|+||||++..++.. ....-..+.++.. +.+... +.+..+.+..+...- + .....+...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~---~-~~s~~~~~~v~ 175 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVI---S-HSEGADPAAVA 175 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEE---C-CSTTCCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEE---e-cCCccCHHHHH
Confidence 3579999999999999999998764 2222223455543 333332 222333333322110 0 1111122222
Q ss_pred HHHHHHHhcCCcEEEEEEcCCC
Q 047503 270 IIAVRQYLHDKNYMIVLDDVWK 291 (920)
Q Consensus 270 ~~~l~~~L~~kr~LlVlDdv~~ 291 (920)
...+...+..+.-++|+|-.-.
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCCc
Confidence 3345554555555888997643
No 294
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.29 E-value=0.074 Score=55.18 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 179 ARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 179 ~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++++..+... .....+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444444444432 234679999999999999999998763
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.27 E-value=0.033 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998773
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.25 E-value=0.038 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+.|.|+|+.|+||||+|+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999763
No 297
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.22 E-value=0.46 Score=52.19 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcC-------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 179 ARDILIGWLVNG-------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 179 ~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++.++|... ....++|.|+|.+|+||||+|..+...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345566666432 134689999999999999999988764
No 298
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.21 E-value=0.3 Score=53.38 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..||.++|.+|+||||++..++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999888753
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.16 E-value=0.057 Score=51.35 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+|+|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.13 E-value=0.038 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999998763
No 301
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.07 E-value=0.074 Score=56.89 Aligned_cols=113 Identities=15% Similarity=0.109 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVR 274 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (920)
.+++|+|..|+|||||.+.+... +......++ +++.+..... .... ...-.+....... ......+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~------~~~~-~~~v~q~~~~~~~---~~~~~~La 190 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV------HESK-KCLVNQREVHRDT---LGFSEALR 190 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC------CCCS-SSEEEEEEBTTTB---SCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh------hhcc-ccceeeeeecccc---CCHHHHHH
Confidence 59999999999999999988653 211111222 2222221100 0000 0000000000111 22345788
Q ss_pred HHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhhhh
Q 047503 275 QYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVADF 323 (920)
Q Consensus 275 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 323 (920)
..|...+=+|++|.+.+.+.++.+..... .|..|++||-....+..
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 88889999999999987776666554422 36668888887765543
No 302
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.06 E-value=0.048 Score=52.54 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=44.4
Q ss_pred ccCcccCceeeecCC-Ccc-----ccCccccCCCCCcEEeecCCccc-----ccchhhcccccCCeEeecccCC
Q 047503 597 VGNLFHLHYLSVRNT-KVK-----VLPKSIGRLLNLQTLDLKHSLVT-----QLPVEIKNLKKLRYLLVYHSDN 659 (920)
Q Consensus 597 i~~l~~L~~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~ 659 (920)
+.+-..|++|+|+++ .|. .+-..+..-..|+.|+|++|.+. .+...+..-+.|++|+|++|.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344567888999875 654 34455667788999999888877 3334455667888888888743
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.03 E-value=0.052 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 304
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.02 E-value=0.14 Score=55.52 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccc----cCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYV----MNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
-.++.|+|.+|+|||||+..++-.... ...-..++|++....++...+ +.+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 469999999999999999976422111 112356899988776665543 33444443
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.98 E-value=0.048 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 306
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.96 E-value=0.085 Score=55.33 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHHhcC--CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 174 VGIESARDILIGWLVNG--RKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 174 ~Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+|-......+...+... .....+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444444444444433 34577999999999999999999865
No 307
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.91 E-value=0.3 Score=53.40 Aligned_cols=63 Identities=30% Similarity=0.394 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHH
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM-KKDLLIKMI 246 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~ 246 (920)
++++.|..-.. -.-++|+|..|+|||+|++++.++. .+.+-+.++++-+++... ..++.+++.
T Consensus 142 r~ID~l~pigk-GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~ 205 (482)
T 2ck3_D 142 KVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMI 205 (482)
T ss_dssp HHHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEeccccccc-CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhh
Confidence 45666654211 2467899999999999999987751 233446678888877643 334444443
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.87 E-value=0.051 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.87 E-value=0.056 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.83 E-value=0.041 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998774
No 311
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.83 E-value=0.6 Score=48.45 Aligned_cols=92 Identities=20% Similarity=0.140 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRE-CMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
..++.++|.+|+||||++..++... ...-..+.++..... ....+.+....+..+... .......+...+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v----~~~~~~~~p~~~~~~ 171 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV----YGEPGEKDVVGIAKR 171 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCE----ECCTTCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEE----EecCCCCCHHHHHHH
Confidence 6799999999999999999987642 222223555554321 122223333333322211 000112234444444
Q ss_pred HHHHhcCCcE-EEEEEcCCC
Q 047503 273 VRQYLHDKNY-MIVLDDVWK 291 (920)
Q Consensus 273 l~~~L~~kr~-LlVlDdv~~ 291 (920)
..+.++.+.| ++|+|-.-.
T Consensus 172 ~l~~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 172 GVEKFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 4444442333 788897643
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.79 E-value=0.058 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|+|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999876
No 313
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.78 E-value=0.084 Score=52.53 Aligned_cols=39 Identities=28% Similarity=0.255 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 177 ESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555433 3688999999999999999998764
No 314
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.77 E-value=0.4 Score=52.34 Aligned_cols=24 Identities=50% Similarity=0.495 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998764
No 315
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.75 E-value=0.28 Score=51.80 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=38.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
-.++.|.|.+|+||||||..++.+... .=..++|++.. .+...+...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 358999999999999999998775322 22457777653 456777777766543
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.75 E-value=0.054 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999763
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.75 E-value=0.053 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.71 E-value=0.08 Score=53.49 Aligned_cols=40 Identities=20% Similarity=0.100 Sum_probs=27.8
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 178 SARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+.++............+|.|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444433332234678999999999999999998763
No 319
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.70 E-value=0.067 Score=58.14 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHhc----------------------------CCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVN----------------------------GRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~----------------------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.+..++.|...+.. .......+.++|..|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 4578988888888777620 0112346889999999999999999874
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.68 E-value=0.044 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998763
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.67 E-value=0.058 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.66 E-value=0.056 Score=54.99 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998764
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.64 E-value=0.066 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|+|..|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998763
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.62 E-value=0.055 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999773
No 325
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.59 E-value=0.26 Score=54.20 Aligned_cols=62 Identities=29% Similarity=0.412 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHH
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM-KKDLLIKMI 246 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~ 246 (920)
+++.|..-.. -.-++|+|..|+|||+|++++.++. .+.+-+.++++-+++..+ ..++.+++.
T Consensus 155 vID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~ 217 (498)
T 1fx0_B 155 VVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMK 217 (498)
T ss_dssp THHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHH
T ss_pred Eeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhh
Confidence 4566654321 2467899999999999999988751 233457888888887754 334444443
No 326
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.57 E-value=0.079 Score=53.91 Aligned_cols=41 Identities=32% Similarity=0.301 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhcC---CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 177 ESARDILIGWLVNG---RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 177 ~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+...++++..+..+ .....+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34445555555543 234679999999999999999998763
No 327
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.56 E-value=0.44 Score=52.82 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFH 250 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (920)
..+-+.+ .+=..-.++.|.|.+|+||||||.+++.+.... .=..++|++.. .+...+...++....
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 3343444 332234689999999999999999987752221 12357887764 345666666665443
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.53 E-value=0.057 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998874
No 329
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.52 E-value=0.26 Score=54.06 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGREC 236 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~ 236 (920)
.++.|..-.. -..++|+|..|+|||||++.+..+... .+-+.++++-+++..
T Consensus 141 ~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGert 192 (473)
T 1sky_E 141 VVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERT 192 (473)
T ss_dssp HHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCH
T ss_pred HHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCc
Confidence 4555544211 135889999999999999998875222 222456677776653
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.49 E-value=0.048 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.46 E-value=0.047 Score=52.22 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|+.|+||||+|+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999998864
No 332
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.46 E-value=1.8 Score=58.23 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIK 244 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (920)
+-|.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+...
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~ 1313 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSA 1313 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHH
Confidence 467799999999999997776641 222 3455677766666554433
No 333
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.42 E-value=0.05 Score=53.03 Aligned_cols=22 Identities=50% Similarity=0.720 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999865
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.40 E-value=0.069 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+..+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999887
No 335
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.36 E-value=0.06 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998773
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.33 E-value=0.063 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998764
No 337
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.31 E-value=0.079 Score=52.51 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=32.1
Q ss_pred cccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 173 VVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 173 ~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+-+.++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 11 l~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455666666665443 3789999999999999999998764
No 338
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.28 E-value=0.094 Score=55.36 Aligned_cols=25 Identities=44% Similarity=0.500 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+++|+|..|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998763
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.27 E-value=0.07 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.23 E-value=0.064 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999876
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.22 E-value=0.076 Score=52.02 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.21 E-value=0.065 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 343
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.18 E-value=0.55 Score=51.89 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=29.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECM 237 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (920)
...+++|+|.+|+|||||++.+..- .+. -.+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 3579999999999999999998763 221 23455655445544
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.17 E-value=0.057 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|+|+.|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.14 E-value=0.069 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++.|+|..|+|||||+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998874
No 346
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.12 E-value=0.084 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.11 E-value=0.081 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998763
No 348
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.10 E-value=0.073 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 349
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.08 E-value=0.26 Score=52.36 Aligned_cols=52 Identities=10% Similarity=-0.016 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-cCCCCceEEEEeCCC
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYV-MNHFDCRAWITVGRE 235 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~v~~~ 235 (920)
++++.+..-.. -..++|+|..|+|||||++.+.+.... ...+. ++++-+++.
T Consensus 163 raID~~~pi~r-GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGR-GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBT-TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred eeeeeeeeecC-CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 45566654321 358899999999999999998764111 12233 345666654
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.07 E-value=0.077 Score=51.03 Aligned_cols=24 Identities=46% Similarity=0.488 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999874
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.07 E-value=0.068 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.706 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++++|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999998763
No 352
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.06 E-value=0.083 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 357999999999999999999876
No 353
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.03 E-value=0.076 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999999876
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.01 E-value=0.079 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.99 E-value=0.072 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.96 E-value=0.08 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 357
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.91 E-value=0.59 Score=52.82 Aligned_cols=53 Identities=8% Similarity=-0.048 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF 249 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (920)
-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4688999999999999999987752221 123678887644 4666666665544
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.90 E-value=0.083 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.88 E-value=0.056 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998763
No 360
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.86 E-value=0.087 Score=55.30 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+.+||+|.|-|||||||.|-.+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 479999999999999999877654
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.78 E-value=0.063 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998773
No 362
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.73 E-value=0.083 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.73 E-value=0.097 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 192 KQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+||.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999998874
No 364
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.70 E-value=0.15 Score=54.79 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 179 ARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...++.+.+.....+..+|+|+|.+|+|||||+..+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 355566666544445789999999999999999988653
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.69 E-value=0.087 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 366
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.68 E-value=0.14 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||++.+.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999865
No 367
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.64 E-value=0.069 Score=52.91 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 368
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.62 E-value=0.081 Score=56.77 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=33.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
++++|.+..+..+...+.... ..-+.|+|..|+|||++|+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 468999886666544444322 223889999999999999999874
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.60 E-value=0.1 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999998866
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.57 E-value=0.089 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.55 E-value=0.092 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 372
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.50 E-value=0.086 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998773
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.47 E-value=0.07 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=17.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998763
No 374
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.47 E-value=0.18 Score=52.96 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+++|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998764
No 375
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.47 E-value=0.13 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999875
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.44 E-value=0.093 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+|+|+|+.|+||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999985
No 377
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.96 Score=51.96 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||.+.+.-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35999999999999999999865
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.39 E-value=0.092 Score=51.19 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|+.|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 379
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.34 E-value=0.1 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+-.+|+|.|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.32 E-value=0.096 Score=50.62 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.25 E-value=0.14 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.+.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.23 E-value=0.11 Score=54.33 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+++|+|.+|+||||+++.++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 56999999999999999999876
No 383
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.22 E-value=0.14 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.+.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999865
No 384
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.15 E-value=0.15 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999864
No 385
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.14 E-value=0.7 Score=47.93 Aligned_cols=24 Identities=50% Similarity=0.495 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998764
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.12 E-value=0.092 Score=50.56 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.12 E-value=0.11 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999998763
No 388
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.03 E-value=0.066 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998663
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.01 E-value=0.15 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||.+.+.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.00 E-value=0.13 Score=53.73 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+++|+|..|+||||+++.++.-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999998763
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.95 E-value=0.058 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|+|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998764
No 392
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.92 E-value=0.11 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 393
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.89 E-value=0.18 Score=51.53 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5999999999999999999876
No 394
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.87 E-value=0.76 Score=45.84 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHh
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLF 215 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 215 (920)
.++++..+..+ ..+.|+|..|.||||+.....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHH
Confidence 45555555554 388999999999998776543
No 395
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.87 E-value=0.31 Score=53.00 Aligned_cols=92 Identities=10% Similarity=0.187 Sum_probs=49.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCC----ceEEEEeCCCCC-HHHHHHHHHHHHhhhccCCccccCCcCCHH---
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVMNHFD----CRAWITVGRECM-KKDLLIKMIKEFHQLTGQSALGEMNNMEEK--- 267 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~--- 267 (920)
-++|.|..|+|||+|+.++.++... +-+ .++++-+++..+ ..++..++.+. +.....-.-....+.+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~-g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQT-GAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHH-TGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhc-CCccceEEEEECCCCCHHHHH
Confidence 4679999999999999999886433 223 566666765432 33444433221 100000000001111111
Q ss_pred ---HHHHHHHHHhc---CCcEEEEEEcCC
Q 047503 268 ---DLIIAVRQYLH---DKNYMIVLDDVW 290 (920)
Q Consensus 268 ---~l~~~l~~~L~---~kr~LlVlDdv~ 290 (920)
...-.+.++++ ++..|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12223455554 688999999983
No 396
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.84 E-value=1.1 Score=51.47 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999854
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.80 E-value=0.45 Score=50.27 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=57.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHHHH
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIAVR 274 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (920)
.+++|+|..|.|||||++.+..- + ..-...+.+.-........ ..... .-... ........+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~------------~~~~i-~~~~g-gg~~~r~~la 234 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKH------------HKNYT-QLFFG-GNITSADCLK 234 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSS------------CSSEE-EEECB-TTBCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeecccccc------------chhEE-EEEeC-CChhHHHHHH
Confidence 48999999999999999998773 2 1223455554322111000 00000 00000 0112344566
Q ss_pred HHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhh
Q 047503 275 QYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAV 320 (920)
Q Consensus 275 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 320 (920)
..|..++=+|++|.+-..+.++.+. .+..+ +.-+|+||.....
T Consensus 235 ~aL~~~p~ilildE~~~~e~~~~l~-~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 235 SCLRMRPDRIILGELRSSEAYDFYN-VLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp HHTTSCCSEEEECCCCSTHHHHHHH-HHHTT--CCCEEEEEECSSH
T ss_pred HHhhhCCCEEEEcCCChHHHHHHHH-HHhcC--CCEEEEEEcccHH
Confidence 6777888899999998766665443 33322 2236666665543
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.79 E-value=0.13 Score=49.12 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+|.|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998773
No 399
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.76 E-value=0.49 Score=50.16 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-CCCCceEEEEeCCC
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVM-NHFDCRAWITVGRE 235 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v~~~ 235 (920)
--++++.+..-.. -.-++|+|..|+|||+|++++.+..... ..+. ++++-+++.
T Consensus 162 GiraID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred cchhhhhcccccC-CceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3467777765332 2467899999999999999988752111 2233 245556554
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.75 E-value=0.14 Score=50.40 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998764
No 401
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.74 E-value=0.13 Score=51.37 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccc---cC-CCCceEEEEeCCCCCH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYV---MN-HFDCRAWITVGRECMK 238 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~v~~~~~~ 238 (920)
-.+++|+|..|+|||||++.++..... .. .-..++|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 479999999999999999998652111 11 2345788876554443
No 402
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.73 E-value=0.12 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998774
No 403
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.72 E-value=0.16 Score=55.63 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHhcC------------CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNG------------RKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|.++.++.+...+... +...+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889888888887666321 112456889999999999999999874
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.70 E-value=0.23 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 405
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.66 E-value=0.2 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999854
No 406
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.62 E-value=0.12 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.60 E-value=0.12 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|.|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998773
No 408
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.59 E-value=0.12 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|.|.|+.|+||||+|+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 409
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.53 E-value=0.46 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998874
No 410
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.52 E-value=0.19 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||++.+.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 411
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.50 E-value=0.18 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||++.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35999999999999999999865
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.47 E-value=0.15 Score=50.46 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 413
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.44 E-value=0.19 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999865
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.42 E-value=0.15 Score=52.75 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999873
No 415
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.42 E-value=0.13 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998874
No 416
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.42 E-value=0.16 Score=49.83 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999865
No 417
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.39 E-value=0.6 Score=53.78 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998755
No 418
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.33 E-value=0.19 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999865
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.29 E-value=0.13 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 420
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.28 E-value=0.2 Score=51.40 Aligned_cols=23 Identities=52% Similarity=0.660 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.25 E-value=0.11 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999977
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.25 E-value=0.11 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.23 E-value=0.14 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998774
No 424
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.19 E-value=0.14 Score=48.50 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++.|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999998774
No 425
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.18 E-value=0.19 Score=48.33 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 180 RDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+..+..++.+-+ ....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHHH
Confidence 555666665432 2346899999999999999888774
No 426
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.14 E-value=0.14 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999998874
No 427
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.09 E-value=0.17 Score=54.02 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+++|+|..|+||||+++.++.-
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 579999999999999999998763
No 428
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.06 E-value=0.1 Score=52.14 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 047503 195 SVVALVGQGGIGKTTLAGKLF 215 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~ 215 (920)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 429
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.03 E-value=0.85 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35999999999999999998754
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.99 E-value=0.17 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++|.|+|+.|+||||||..+++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998874
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.98 E-value=0.15 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 432
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.95 E-value=0.19 Score=58.27 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.++|.+..++.+...+..+. .+.|+|..|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~----~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR----HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC----CEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCCC----EEEEEeCCCCCHHHHHHHHhcc
Confidence 468999988888888777653 7899999999999999999874
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.86 E-value=0.22 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999865
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.83 E-value=0.16 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.76 E-value=0.16 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047503 196 VVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (920)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 436
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.65 E-value=0.17 Score=51.24 Aligned_cols=22 Identities=45% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.55 E-value=0.18 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999998774
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.53 E-value=0.17 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 439
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.52 E-value=0.24 Score=50.90 Aligned_cols=22 Identities=41% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.50 E-value=0.18 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998874
No 441
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.47 E-value=0.17 Score=51.67 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||++.++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.34 E-value=0.25 Score=47.08 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998765
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.30 E-value=0.18 Score=51.28 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 444
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.28 E-value=0.18 Score=48.53 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 445
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.28 E-value=0.19 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|.|||||.+.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.16 E-value=0.18 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.14 E-value=0.23 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998764
No 448
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.13 E-value=0.31 Score=52.42 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+++-+.-.-+...+++|+|+.|.|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433323356999999999999999999986
No 449
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.09 E-value=0.22 Score=50.84 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...++.++|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3678999999999999999998753
No 450
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.06 E-value=0.41 Score=51.03 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccc---CCC-CceEEEEeCCCCCHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVM---NHF-DCRAWITVGRECMKK 239 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F-~~~~wv~v~~~~~~~ 239 (920)
.-.++.|+|..|+|||||++.++...... +.. ..++|++....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 35799999999999999999987642111 111 245899876655433
No 451
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.97 E-value=0.2 Score=50.80 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|..|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.92 E-value=0.19 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..|.|.|+.|+||||+|+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998774
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.88 E-value=0.19 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998773
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.74 E-value=0.21 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+|+|.|..|+||||+++.+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999999877
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.71 E-value=0.22 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.++|.|+|+.|+||||||..+++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 578999999999999999999874
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.61 E-value=0.37 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-.+|+|.|+.|+||||+++.+.+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999885
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.59 E-value=0.22 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.59 E-value=0.26 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+.|.|.|..|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999998764
No 459
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.57 E-value=0.25 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998765
No 460
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.53 E-value=1.7 Score=52.52 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKL 214 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v 214 (920)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999998
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.49 E-value=0.23 Score=48.54 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=44.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH---hhhccCCccccCCcCCHHHHHHH
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEF---HQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
+|.|.|++|+||||.|+.+.+. |. ...++ ..+++++-+..- +....... ..-.-.+.+-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~-~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYM-ERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHH-hcCCcCCHHHHHHH
Confidence 5789999999999999998874 21 22332 345555433221 00000000 00112234556677
Q ss_pred HHHHhcCCcEEEEEEcC
Q 047503 273 VRQYLHDKNYMIVLDDV 289 (920)
Q Consensus 273 l~~~L~~kr~LlVlDdv 289 (920)
+.+.+..... +|||..
T Consensus 68 v~~~l~~~~~-~ilDGf 83 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGF 83 (206)
T ss_dssp HHHHCCSSSC-EEEESC
T ss_pred HHHhhccCCc-eEecCC
Confidence 7788866544 678987
No 462
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.43 E-value=1.2 Score=49.05 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHH-HHHhcCccccCCCCc-eEEEEeCCCC
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLA-GKLFNNQYVMNHFDC-RAWITVGREC 236 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~v~~~~ 236 (920)
+.++.|..-.. -.-++|+|..|+|||+|| ..+.+.. .-+. ++++-+++..
T Consensus 164 raID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~ 215 (515)
T 2r9v_A 164 KAIDSMIPIGR-GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKK 215 (515)
T ss_dssp HHHHHHSCEET-TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCH
T ss_pred ccccccccccc-CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCc
Confidence 34555544211 236789999999999996 5777752 2453 4777777654
No 463
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.41 E-value=0.22 Score=54.12 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
++.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444433222357999999999999999999876
No 464
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.41 E-value=0.22 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.37 E-value=0.14 Score=53.20 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=18.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 466
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.37 E-value=0.25 Score=50.29 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC-CCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR-ECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
-.+++|+|..|+|||||++.+..- ....+...+++.-.. .+-.... .... .+. .-.... ..+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-------~~~v-~q~-~~gl~~---~~l~~~ 90 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-------KSIV-NQR-EVGEDT---KSFADA 90 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-------SSEE-EEE-EBTTTB---SCHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-------ceee-eHH-HhCCCH---HHHHHH
Confidence 469999999999999999988663 111112333322110 0000000 0000 000 000011 123456
Q ss_pred HHHHhcCCcEEEEEEcCCCchhhhHHHHhccCCCCCcEEEEEccchhhh
Q 047503 273 VRQYLHDKNYMIVLDDVWKIELWGDVEHALLDNKKGSRIMLTTRHKAVA 321 (920)
Q Consensus 273 l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 321 (920)
+...|..++=+|++|..-+.+....+.... ..|.-|++||-.....
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 666666677788899987544333333222 2366788888776544
No 467
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.34 E-value=0.22 Score=49.75 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 468
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.28 E-value=0.27 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35999999999999999999855
No 469
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.14 E-value=0.24 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999865
No 470
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.13 E-value=0.65 Score=60.09 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhhhccCCccccCCcCCHHHHHHH
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKEFHQLTGQSALGEMNNMEEKDLIIA 272 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 272 (920)
.-++|.|+|++|+|||+||.++... ...+=..++|+++.+.++... ++.++..... .. -..-.+.++....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~-l~-v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDN-LL-CSQPDTGEQALEI 1496 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTT-CE-EECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchh-ce-eecCChHHHHHHH
Confidence 3579999999999999999998774 223334688888887776655 3333321111 00 0001123455566
Q ss_pred HHHHhc-CCcEEEEEEcCC
Q 047503 273 VRQYLH-DKNYMIVLDDVW 290 (920)
Q Consensus 273 l~~~L~-~kr~LlVlDdv~ 290 (920)
++...+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 665554 466799999995
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.00 E-value=0.3 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 472
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.90 E-value=0.28 Score=49.33 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR 234 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 234 (920)
-.++.|.|.+|+||||||.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 3589999999999999998876542 12224677877543
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.84 E-value=0.25 Score=45.81 Aligned_cols=22 Identities=41% Similarity=0.774 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 474
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.84 E-value=3.3 Score=49.94 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=63.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccCCCC---ceEEEEeCCC-------CCHHH-----------HHHHHHHHHhhhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNNQYVMNHFD---CRAWITVGRE-------CMKKD-----------LLIKMIKEFHQLT 253 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~v~~~-------~~~~~-----------~~~~i~~~l~~~~ 253 (920)
.+++|+|..|.|||||.+.+..- .+.+ ++ ..-.+.+.+. .+..+ -..++++.++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcCC-CccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 48999999999999999999742 1111 11 0001222222 12222 2233344433210
Q ss_pred cCCccccCCcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhccCCCCCcEEEEEccchhhhh
Q 047503 254 GQSALGEMNNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHALLDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 322 (920)
......+.+.+..+.++ .|-..|-.++=+++||.--+. ..-..+...+.. .|..||++|.+.....
T Consensus 540 -~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 540 -EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp -HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred -hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 00011234455554433 455566677789999987543 122233333333 3667888888766554
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.76 E-value=0.53 Score=46.89 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=26.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEE
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWIT 231 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 231 (920)
..+|.|.|..|+||||+++.+.+... ...+..+..+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987522 23445344443
No 476
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.76 E-value=0.3 Score=53.67 Aligned_cols=24 Identities=50% Similarity=0.609 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+|.|+|.+|+||||+|..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999988764
No 477
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.72 E-value=0.46 Score=47.99 Aligned_cols=37 Identities=24% Similarity=0.526 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 181 DILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..+..|+....+....|.++|++|.|||.+|..+++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3466666654333457999999999999999999873
No 478
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.69 E-value=1.1 Score=48.27 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=32.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 171 DEVVGIESARDILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 171 ~~~~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..++|....+.++.+.+..-.....-|.|.|.+|.||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence 35678777777666655432111233668999999999999999874
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.60 E-value=0.26 Score=50.78 Aligned_cols=23 Identities=48% Similarity=0.560 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35999999999999999998875
No 480
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.53 E-value=1.6 Score=48.22 Aligned_cols=51 Identities=24% Similarity=0.196 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGRECMKKDLLIKMIKE 248 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (920)
-.++.|.|.+|+||||||.+++.+.... =..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 4689999999999999999987763222 23577776543 444555555543
No 481
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.52 E-value=0.27 Score=51.26 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccCCCC-ceEEEEeC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNNQYVMNHFD-CRAWITVG 233 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~v~ 233 (920)
-.+++|+|.+|+|||||++.++.. ....-. .++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 359999999999999999998764 222212 46666543
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.51 E-value=0.27 Score=50.31 Aligned_cols=21 Identities=48% Similarity=0.868 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047503 196 VVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 483
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.50 E-value=0.48 Score=51.52 Aligned_cols=92 Identities=17% Similarity=0.299 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccc--------CCCC-ceEEEEeCCCCCHHHHHHHHHHHHhhhccCC---c-cccCC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNNQYVM--------NHFD-CRAWITVGRECMKKDLLIKMIKEFHQLTGQS---A-LGEMN 262 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~-~~~~~ 262 (920)
-++|.|..|+|||+|+.++.++.... .+=+ .++++-+++..+- ..++++.+.....-+ . ....+
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~E---v~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRE---LSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHH---HHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHH---HHHHHHHhhhcccccceEEEEECCC
Confidence 56799999999999999998864431 1111 5666666654322 233333333210000 0 00011
Q ss_pred cCCHHH-----HHHHHHHHhc---CCcEEEEEEcCC
Q 047503 263 NMEEKD-----LIIAVRQYLH---DKNYMIVLDDVW 290 (920)
Q Consensus 263 ~~~~~~-----l~~~l~~~L~---~kr~LlVlDdv~ 290 (920)
...... ..-.+.++++ ++..|+++||+-
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111111 2233455554 688999999983
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.48 E-value=0.27 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 485
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.48 E-value=0.29 Score=45.96 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..-|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999998765
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.47 E-value=0.39 Score=45.25 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 487
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.42 E-value=0.32 Score=51.00 Aligned_cols=40 Identities=28% Similarity=0.244 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccCCCCceEEEEeCC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNNQYVMNHFDCRAWITVGR 234 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v~~ 234 (920)
..++|+|+|-||+||||+|..+..- ....=..++-|+...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 4689999999999999999887663 222212455555543
No 488
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.41 E-value=1.1 Score=49.36 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHH-HHHhcCccc----cCCCC-ceEEEEeCCCC
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLA-GKLFNNQYV----MNHFD-CRAWITVGREC 236 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~v~~~~ 236 (920)
+.++.|..-.. -.-++|+|..|+|||+|| ..+.|.... .++-+ .++++-+++..
T Consensus 151 raID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~ 210 (510)
T 2ck3_A 151 KAVDSLVPIGR-GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR 210 (510)
T ss_dssp HHHHHHSCCBT-TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH
T ss_pred eeecccccccc-CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc
Confidence 35566654321 235789999999999995 466665321 12344 46777787654
No 489
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.33 E-value=0.4 Score=50.98 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 047503 195 SVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++|+|+.|.|||||.+.++-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999876
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.31 E-value=0.28 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998765
No 491
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.30 E-value=1.2 Score=48.92 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHH-HHHhcCccccCCCCc-eEEEEeCCCC
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLA-GKLFNNQYVMNHFDC-RAWITVGREC 236 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~v~~~~ 236 (920)
.++.|..-.. -.-++|+|..|+|||+|| ..+.|.. +-+. ++++-+++..
T Consensus 152 aID~l~Pigr-GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~ 202 (502)
T 2qe7_A 152 AIDSMIPIGR-GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQ 202 (502)
T ss_dssp HHHHSSCCBT-TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCH
T ss_pred eccccccccc-CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcc
Confidence 4555544221 235789999999999996 4777752 2453 4777777653
No 492
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.29 E-value=0.48 Score=52.97 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 193 QRSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...+|.|+|.+|+||||++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998753
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.28 E-value=0.78 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-..|.|.|..|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.26 E-value=0.29 Score=50.63 Aligned_cols=61 Identities=7% Similarity=-0.018 Sum_probs=35.7
Q ss_pred CcCCHHHHHH-HHHHHhcCCcEEEEEEcCCCc---hhhhHHHHhc-cCCCCCcEEEEEccchhhhh
Q 047503 262 NNMEEKDLII-AVRQYLHDKNYMIVLDDVWKI---ELWGDVEHAL-LDNKKGSRIMLTTRHKAVAD 322 (920)
Q Consensus 262 ~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l-~~~~~gs~iivTtR~~~v~~ 322 (920)
...+..+.+. .+...|-.++=+++||..-.. ..-..+...+ .....|..||++|.+...+.
T Consensus 158 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 3455555443 455566677778999997543 2233344432 23234677888888876554
No 495
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.24 E-value=0.73 Score=50.45 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccCC--CCceEEEEeCCCCC-HHHHHHHH
Q 047503 183 LIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFNNQYVMNH--FDCRAWITVGRECM-KKDLLIKM 245 (920)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~v~~~~~-~~~~~~~i 245 (920)
.++.|..-.. -.-++|+|.+|+|||+|+.+++++....+. =+.++++-+++..+ ..++..++
T Consensus 142 ~ID~l~pigr-GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~ 206 (469)
T 2c61_A 142 TIDGTNTLVR-GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDF 206 (469)
T ss_dssp HHHTTSCCBT-TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred eeeeeecccc-CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHH
Confidence 4555543211 235678899999999999999886433211 13566766765532 33444444
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.09 E-value=0.32 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 047503 194 RSVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998874
No 497
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.06 E-value=0.66 Score=45.42 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..|.|.|..|+||||+++.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 498
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.03 E-value=0.52 Score=50.00 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 047503 182 ILIGWLVNGRKQRSVVALVGQGGIGKTTLAGKLFN 216 (920)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (920)
.+++-+.-.-....+++|+|..|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433223468999999999999999999874
No 499
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.99 E-value=0.32 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 047503 195 SVVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 500
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.96 E-value=0.3 Score=45.38 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047503 196 VVALVGQGGIGKTTLAGKLFNN 217 (920)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~ 217 (920)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998654
Done!