Your job contains 1 sequence.
>047506
MCLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLL
ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV
LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQEFSTILTQNGEDNDTRKF
NIILKVKQSQGTYSTSFPLFGESKVEGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRK
RVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTI
HWTCASSSTLVNNFPETSRELSYLQKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYL
MINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKGEADYVYS
LLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQM
AKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKF
KELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECL
QAVEQHNAHENLENNASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLN
NGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLNPCSREQILDGATLSMPDGHIQ
LGVTETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVN
APISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEE
APLRVPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNI
NGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNIIEERPVPSNQ
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047506
(947 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2205205 - symbol:MOM "MORPHEUS MOLECULE" speci... 302 5.4e-68 3
UNIPROTKB|H3BU65 - symbol:CHD2 "Chromodomain-helicase-DNA... 187 2.3e-13 1
UNIPROTKB|F1N8K9 - symbol:CHD1 "Chromodomain-helicase-DNA... 207 4.6e-13 1
UNIPROTKB|F1NP27 - symbol:CHD1 "Chromodomain-helicase-DNA... 207 4.8e-13 3
UNIPROTKB|F1N8K8 - symbol:CHD1 "Chromodomain-helicase-DNA... 207 4.8e-13 3
UNIPROTKB|I3L6N4 - symbol:CHD1 "Uncharacterized protein" ... 194 1.4e-11 2
UNIPROTKB|I3LIS2 - symbol:CHD1 "Uncharacterized protein" ... 194 1.4e-11 2
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 207 1.8e-11 2
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 195 2.2e-11 2
UNIPROTKB|F1RN66 - symbol:CHD1 "Uncharacterized protein" ... 194 2.8e-11 2
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 195 4.5e-11 1
UNIPROTKB|F1SDB8 - symbol:CHD1L "Uncharacterized protein"... 190 7.0e-11 1
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 195 8.9e-11 2
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 192 8.9e-11 1
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 192 8.9e-11 1
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 183 1.8e-10 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 179 1.8e-10 2
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 185 2.3e-10 1
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 191 2.8e-10 2
UNIPROTKB|H0YGM3 - symbol:SMARCA4 "Transcription activato... 179 3.0e-10 1
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 184 3.0e-10 1
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 182 4.7e-10 2
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 182 4.7e-10 2
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 182 4.7e-10 2
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 185 5.0e-10 1
UNIPROTKB|B5MDZ7 - symbol:CHD1L "Chromodomain-helicase-DN... 181 5.5e-10 2
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 184 6.5e-10 1
MGI|MGI:1344380 - symbol:Chd4 "chromodomain helicase DNA ... 177 7.8e-10 2
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 183 8.2e-10 1
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 191 9.0e-10 2
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 182 9.7e-10 1
UNIPROTKB|E2RHA0 - symbol:CHD4 "Uncharacterized protein" ... 177 9.8e-10 2
UNIPROTKB|J9NW81 - symbol:CHD4 "Uncharacterized protein" ... 177 1.0e-09 2
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 191 1.2e-09 3
ZFIN|ZDB-GENE-030131-4532 - symbol:chd4b "chromodomain he... 182 1.3e-09 2
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 191 1.3e-09 3
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 198 1.4e-09 2
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 177 1.6e-09 2
UNIPROTKB|Q14839 - symbol:CHD4 "Chromodomain-helicase-DNA... 177 1.6e-09 2
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 182 1.6e-09 2
UNIPROTKB|Q86WJ1 - symbol:CHD1L "Chromodomain-helicase-DN... 181 1.7e-09 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 177 1.7e-09 2
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 180 1.7e-09 1
ZFIN|ZDB-GENE-041111-187 - symbol:chd4a "chromodomain hel... 180 2.0e-09 2
TAIR|locus:2116747 - symbol:PKR2 "PICKLE RELATED 2" speci... 178 2.2e-09 2
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 195 2.3e-09 2
UNIPROTKB|E9PU01 - symbol:Chd4 "Protein Chd4" species:101... 177 2.5e-09 2
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 191 2.6e-09 3
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 191 2.6e-09 3
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 191 2.6e-09 3
UNIPROTKB|F1LM59 - symbol:Chd4 "Protein Chd4" species:101... 177 2.6e-09 2
CGD|CAL0001390 - symbol:orf19.3035 species:5476 "Candida ... 185 2.8e-09 3
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 167 3.1e-09 2
WB|WBGene00000482 - symbol:chd-3 species:6239 "Caenorhabd... 178 3.2e-09 1
UNIPROTKB|Q22516 - symbol:chd-3 "Chromodomain-helicase-DN... 178 3.2e-09 1
UNIPROTKB|F1SLR5 - symbol:CHD4 "Uncharacterized protein" ... 177 3.2e-09 2
DICTYBASE|DDB_G0293012 - symbol:DDB_G0293012 "CHR group p... 177 3.3e-09 4
UNIPROTKB|J9NZH0 - symbol:SMARCA1 "Uncharacterized protei... 166 3.4e-09 3
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 141 3.7e-09 3
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 169 3.8e-09 3
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 191 3.9e-09 3
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 191 4.0e-09 3
UNIPROTKB|F1N3F6 - symbol:CHD4 "Uncharacterized protein" ... 177 4.2e-09 2
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 180 4.4e-09 3
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 180 4.4e-09 3
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 183 4.7e-09 3
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 191 4.9e-09 3
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 190 5.0e-09 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 191 5.1e-09 3
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 168 5.4e-09 2
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 165 6.5e-09 2
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 182 6.7e-09 3
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 182 6.7e-09 2
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 182 6.8e-09 2
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 182 6.8e-09 2
UNIPROTKB|K7EMY3 - symbol:CHD5 "Chromodomain-helicase-DNA... 175 6.9e-09 2
TAIR|locus:2040184 - symbol:PKL "PICKLE" species:3702 "Ar... 173 9.3e-09 3
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 169 1.0e-08 1
UNIPROTKB|E2R1M3 - symbol:CHD5 "Uncharacterized protein" ... 175 1.1e-08 3
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 169 1.3e-08 1
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 164 1.3e-08 3
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 149 1.7e-08 3
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 169 2.5e-08 1
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 181 2.5e-08 2
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 169 2.6e-08 1
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 168 2.8e-08 3
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 169 2.8e-08 1
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 176 3.1e-08 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 176 3.3e-08 2
UNIPROTKB|Q8TDI0 - symbol:CHD5 "Chromodomain-helicase-DNA... 175 3.6e-08 3
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 177 4.0e-08 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 163 4.1e-08 2
FB|FBgn0262519 - symbol:Mi-2 species:7227 "Drosophila mel... 180 4.6e-08 3
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 150 4.6e-08 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 169 4.7e-08 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 169 4.7e-08 2
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 170 5.5e-08 2
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 163 5.6e-08 1
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 166 5.9e-08 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 165 5.9e-08 1
WARNING: Descriptions of 257 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2205205 [details] [associations]
symbol:MOM "MORPHEUS MOLECULE" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006342
"chromatin silencing" evidence=IMP] [GO:0032259 "methylation"
evidence=IMP] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] PROSITE:PS51085 PROSITE:PS51194 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006351 GO:GO:0004386 GO:GO:0051537 GO:GO:0031047
eggNOG:COG0553 EMBL:AC026875 GO:GO:0006344 EMBL:AF213627
EMBL:AF213628 EMBL:AK117959 EMBL:BT006219 IPI:IPI00523557
PIR:D86215 RefSeq:NP_563806.1 RefSeq:NP_849608.1 UniGene:At.20225
PDB:3VEM PDBsum:3VEM ProteinModelPortal:Q9M658 SMR:Q9M658
IntAct:Q9M658 STRING:Q9M658 PaxDb:Q9M658 PRIDE:Q9M658
EnsemblPlants:AT1G08060.1 EnsemblPlants:AT1G08060.2 GeneID:837322
KEGG:ath:AT1G08060 TAIR:At1g08060 HOGENOM:HOG000153248
InParanoid:Q9M658 OMA:SENLETQ PhylomeDB:Q9M658
ProtClustDB:CLSN2719681 Genevestigator:Q9M658 Uniprot:Q9M658
Length = 2001
Score = 302 (111.4 bits), Expect = 5.4e-68, Sum P(3) = 5.4e-68
Identities = 125/467 (26%), Positives = 211/467 (45%)
Query: 334 PEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKI 393
P+MAKLC+VL L + VG FLEY++ NHR+ EP + QAF+I+L W AA L KQ +
Sbjct: 959 PKMAKLCQVLHLSDACTSMVGNFLEYVIENHRIYEEPATTFQAFQIALSWIAALLVKQIL 1018
Query: 394 DHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSH 453
HKESL A L F C + E DY+YS+L C+K +F L ++ S+ +VS
Sbjct: 1019 SHKESLVRANSELAFKCSRVEVDYIYSILSCMKSLF-LEHTQGLQFDCFGTNSKQSVVS- 1076
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
K + S+ G + +K K +R+ +E+ +KR ++T
Sbjct: 1077 --------TKLVNESLSGATVRDEKINTKSMRNSSEDEECMTEKRCSHYSTATRDIEKTI 1128
Query: 513 AAVIRYHCNGKMQMDKLKVLENEYAEKFKELER---DRDVRLENLEALHVASMKKLSDKQ 569
+ + + + K Q+ KL V E+E EK EL D+ +LE +++ A ++ +
Sbjct: 1129 SGIKKKY---KKQVQKL-VQEHE--EKKMELLNMYADKKQKLETSKSVEAAVIRITCSRT 1182
Query: 570 TSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQ-HN-AHENLENNASNSIHISAGQN 627
++ V +K L K + ECL+++EQ H+ A + L + + I+ ++
Sbjct: 1183 STQVGDLKL-LDHNYERKFDEIK-SEKNECLKSLEQMHDVAKKKLAED--EACWINRIKS 1238
Query: 628 HDKLINIITPV--------SGEGRLE--SPVIQ-----ETVAGPLRLNNGGDKLDTIASA 672
+ + P+ SG + +P +Q A N K++ + A
Sbjct: 1239 WAAKLKVCVPIQSGNNKHFSGSSNISQNAPDVQICNNANVEATYADTNCMASKVNQVPEA 1298
Query: 673 EASIA----GLKERIEDSNSGDNQENNEPLNPCSREQILDGATLSMPDGHIQLGVTETIS 728
E ++ G +++ + N E + ++ SREQ+ T S + H + V E +
Sbjct: 1299 ENTLGTMSGGSTQQVHEMVDVRNDETMD-VSALSREQL----TKSQSNEHASITVPEILI 1353
Query: 729 SSDGAGN-CLLPVHSSGGKICDE-ARLSPEAQVPGEVAETVSSNDDL 773
+D L VH S + CD + + V V E S ++L
Sbjct: 1354 PADCQEEFAALNVHLSEDQNCDRITSAASDEDVSSRVPEVSQSLENL 1400
Score = 288 (106.4 bits), Expect = 5.4e-68, Sum P(3) = 5.4e-68
Identities = 63/163 (38%), Positives = 99/163 (60%)
Query: 152 FEQTLLNDVVQEFSTILT-QNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGMDE 210
FEQ++++ V+ EFS+IL+ + GE+N+ K ++L+ K +QGTYS+ LFGE ++ DE
Sbjct: 749 FEQSIMDGVIHEFSSILSSKGGEENEV-KLCLLLEAKHAQGTYSSDSTLFGEDHIKLSDE 807
Query: 211 ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNC 270
E P+IFW+ LL GK+P WKY S + Q +RKRVQYF+ + P+ AKK+++ + +
Sbjct: 808 ESPNIFWSKLLGGKNPMWKYPSDTPQRNRKRVQYFEGSEASPKTGDGGNAKKRKKASDDV 867
Query: 271 VNQSSLKPGLE--EGKTVSRDKEGT--SVDSSTIHWTCASSST 309
+ P ++ E K +D G S T+ +C SS T
Sbjct: 868 TDPRVTDPPVDDDERKASGKDHMGALESPKVITLQSSCKSSGT 910
Score = 255 (94.8 bits), Expect = 5.4e-68, Sum P(3) = 5.4e-68
Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 20 FVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVII 79
FV QRFG SYE + SKK +A+ NFN S V LLETRAC +IKL A I+
Sbjct: 600 FVGQRFGPKSYEH---GIYSSKKNSAINNFNKESQCCVLLLETRACSQTIKLLRADAFIL 656
Query: 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNM 137
F S +P +D++ +++I ++ E+ K+FRLYS CTVEEK LILA+Q+K + +N+
Sbjct: 657 FGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAVENL 714
Score = 81 (33.6 bits), Expect = 7.9e-45, Sum P(3) = 7.9e-45
Identities = 44/156 (28%), Positives = 69/156 (44%)
Query: 767 VSSNDDLE-NVVPVNAPISK-DQIPDGATT--SMPDGEVLLRVPEAASSSNCTENFMD-S 821
+ +N ++E N SK +Q+P+ T +M G +V E N + MD S
Sbjct: 1272 ICNNANVEATYADTNCMASKVNQVPEAENTLGTMSGGSTQ-QVHEMVDVRN--DETMDVS 1328
Query: 822 PPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENAISLNP-LSKEQIPDGATSCIPSA 880
EQ+ + NE A + VP+ + + E +LN LS++Q D TS
Sbjct: 1329 ALSREQLT----KSQSNEHASITVPEILIPADCQEEFAALNVHLSEDQNCDRITSAASDE 1384
Query: 881 EVLLKVPESSPG--EIVESGNINGDKNEAFATTSEN 914
+V +VPE S + S + ++ EA TT EN
Sbjct: 1385 DVSSRVPEVSQSLENLSASPEFSLNREEALVTT-EN 1419
Score = 69 (29.3 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 763 VAETVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTENFMDSP 822
V E + D E +N +S+DQ D T++ D +V RVPE + S EN SP
Sbjct: 1348 VPEILIPADCQEEFAALNVHLSEDQNCDRITSAASDEDVSSRVPEVSQS---LENLSASP 1404
Score = 67 (28.6 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAE 538
++ KLR + KK +++ KA+LE K A R K +E E+
Sbjct: 1739 ELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRR---------KFHEVEAEHNT 1789
Query: 539 KFKELERDRDVRLENLEALHVASMKKLSDKQTS 571
+ ++E+D+++ + N + L A + K +DK+ S
Sbjct: 1790 RTTKIEKDKNLVIMN-KLLANAFLSKCTDKKVS 1821
Score = 51 (23.0 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 238 SRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQ-SSLKPGLEEGKTVSRDKEGTS-- 294
+ KR ++ + E I + KK ++ V + K L + K TS
Sbjct: 1110 TEKRCSHYSTATRDIEKTISGIKKKYKKQVQKLVQEHEEKKMELLNMYADKKQKLETSKS 1169
Query: 295 VDSSTIHWTCASSSTLVNN 313
V+++ I TC+ +ST V +
Sbjct: 1170 VEAAVIRITCSRTSTQVGD 1188
Score = 46 (21.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 255 EIDEVAKKQRRVASNCVNQSS----LKPGLEEGKTVSRDKEGT 293
E+ KK+++V +C N+S ++P +EE V++D + T
Sbjct: 407 EMCNTCKKRQKVNGDCQNRSVCSCIVQP-VEESDNVTQDMKET 448
>UNIPROTKB|H3BU65 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AC013394 HGNC:HGNC:1917
ChiTaRS:CHD2 Ensembl:ENST00000557116 Bgee:H3BU65 Uniprot:H3BU65
Length = 113
Score = 187 (70.9 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 43/102 (42%), Positives = 63/102 (61%)
Query: 26 GSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
G + R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW
Sbjct: 10 GQEILLRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 69
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+P NDL+A R Q +Q+ ++RL + TVEE+++ AK+
Sbjct: 70 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 111
>UNIPROTKB|F1N8K9 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 GeneTree:ENSGT00560000076896
EMBL:AADN02065411 EMBL:AADN02065412 EMBL:AADN02065413
IPI:IPI00592819 Ensembl:ENSGALT00000023600 ArrayExpress:F1N8K9
Uniprot:F1N8K9
Length = 559
Score = 207 (77.9 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 86/288 (29%), Positives = 132/288 (45%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 79 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 138
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 139 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 198
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+T T N +E S IL GE+ + ++ +I ILK +++ G
Sbjct: 199 GSTPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGP 256
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I ++ W+ SQ R+R++ ++ QK
Sbjct: 257 LTVGDELLSQFKVANFSNMDEDDIELEPERNSRN--WEEIIPESQ--RRRIEE-EERQK- 310
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSST 299
E++E+ R NC Q S G E ++ SR G+ DS T
Sbjct: 311 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDSIT 352
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 207 (77.9 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 86/288 (29%), Positives = 132/288 (45%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 823 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 882
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 883 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 942
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+T T N +E S IL GE+ + ++ +I ILK +++ G
Sbjct: 943 GSTPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGP 1000
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I ++ W+ SQ R+R++ ++ QK
Sbjct: 1001 LTVGDELLSQFKVANFSNMDEDDIELEPERNSRN--WEEIIPESQ--RRRIEE-EERQK- 1054
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSST 299
E++E+ R NC Q S G E ++ SR G+ DS T
Sbjct: 1055 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDSIT 1096
Score = 65 (27.9 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 486 KQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELER 545
K+ EEK++ ++ +++ + E K++ + ++ N + + +K+K E+ EK + E+
Sbjct: 1397 KEAEEKRETKEKENKRELKREKKEKEDKKELKEKDNKEKRENKVK--ESTQKEKEVKEEK 1454
Query: 546 DRDVRLENLE 555
+++ EN E
Sbjct: 1455 VNEIKSENKE 1464
Score = 65 (27.9 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 33/147 (22%), Positives = 72/147 (48%)
Query: 470 RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKL 529
R ++K K+ K K+ E+KK++ ++ ++K + + K+ T+ +++ +K+
Sbjct: 1403 RETKEKENKRELKREKKEKEDKKELKEKDNKEKRENKVKESTQK-------EKEVKEEKV 1455
Query: 530 KVLENEYAEKFKELER-DRDVRLE-NLEALHVASMKKLSDKQTSWV--EQ---VKSWL-Q 581
+++E EK K++ D V + E + ++ + D++T V E+ VK+ L Q
Sbjct: 1456 NEIKSENKEKSKKIPLLDTPVHITATSEPVPISEESEELDQKTFSVCKERMRPVKAALKQ 1515
Query: 582 IQLSNKPSSN--EYGHSVECLQAVEQH 606
+ K S + H+ +CL + H
Sbjct: 1516 LDRPEKGLSEREQLEHTRQCLIKIGDH 1542
Score = 46 (21.3 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 593 YGHSVECLQAVEQHNAHENLENNASNSI 620
Y H+++ Q +QHN +N+ +N + +
Sbjct: 1582 YKHAIKKRQESQQHN-DQNISSNVNTHV 1608
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 207 (77.9 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 86/288 (29%), Positives = 132/288 (45%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 823 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 882
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 883 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 942
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+T T N +E S IL GE+ + ++ +I ILK +++ G
Sbjct: 943 GSTPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGP 1000
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I ++ W+ SQ R+R++ ++ QK
Sbjct: 1001 LTVGDELLSQFKVANFSNMDEDDIELEPERNSRN--WEEIIPESQ--RRRIEE-EERQK- 1054
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSST 299
E++E+ R NC Q S G E ++ SR G+ DS T
Sbjct: 1055 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDSIT 1096
Score = 65 (27.9 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 486 KQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELER 545
K+ EEK++ ++ +++ + E K++ + ++ N + + +K+K E+ EK + E+
Sbjct: 1398 KEAEEKRETKEKENKRELKREKKEKEDKKELKEKDNKEKRENKVK--ESTQKEKEVKEEK 1455
Query: 546 DRDVRLENLE 555
+++ EN E
Sbjct: 1456 VNEIKSENKE 1465
Score = 65 (27.9 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 33/147 (22%), Positives = 72/147 (48%)
Query: 470 RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKL 529
R ++K K+ K K+ E+KK++ ++ ++K + + K+ T+ +++ +K+
Sbjct: 1404 RETKEKENKRELKREKKEKEDKKELKEKDNKEKRENKVKESTQK-------EKEVKEEKV 1456
Query: 530 KVLENEYAEKFKELER-DRDVRLE-NLEALHVASMKKLSDKQTSWV--EQ---VKSWL-Q 581
+++E EK K++ D V + E + ++ + D++T V E+ VK+ L Q
Sbjct: 1457 NEIKSENKEKSKKIPLLDTPVHITATSEPVPISEESEELDQKTFSVCKERMRPVKAALKQ 1516
Query: 582 IQLSNKPSSN--EYGHSVECLQAVEQH 606
+ K S + H+ +CL + H
Sbjct: 1517 LDRPEKGLSEREQLEHTRQCLIKIGDH 1543
Score = 46 (21.3 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 593 YGHSVECLQAVEQHNAHENLENNASNSI 620
Y H+++ Q +QHN +N+ +N + +
Sbjct: 1583 YKHAIKKRQESQQHN-DQNISSNVNTHV 1609
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 194 (73.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 85/289 (29%), Positives = 130/289 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 825 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 884
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R L Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 885 DLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 944
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 945 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 1002
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1003 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1056
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTI 300
E++E+ R NC Q S G EG+ SR++ + DS +I
Sbjct: 1057 ---ELEEIYMLPRM--RNCAKQISFN-G-SEGRR-SRNRRYSGSDSDSI 1097
Score = 61 (26.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 26/115 (22%), Positives = 54/115 (46%)
Query: 394 DHKESLE--LAKKHLHFSCK-KGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEI 450
D KE+++ + KH + K +G+++ C+K+ E K +K + N R + EI
Sbjct: 1364 DKKENMDEITSVKHPNKKIKTEGDSEEKPEPDVCIKK--EPEEKREAKEKENKRELKREI 1421
Query: 451 VSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL 505
+++ + +KDF K+ ++ ++ ++L E K K +K+ L
Sbjct: 1422 -KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKE-RSKKSSL 1474
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 33/147 (22%), Positives = 69/147 (46%)
Query: 470 RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKL 529
R ++K K+ K K+ E+KKDI ++ ++K + + K+ + ++ +KL
Sbjct: 1406 REAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQK-------EKDIKEEKL 1458
Query: 530 KVLENEYAEKFKELE-RDRDVRLE-NLEALHVASMKKLSDKQTSWV--EQ---VKSWL-Q 581
++E E+ K+ D V + + E + ++ + D++T + E+ VK+ L Q
Sbjct: 1459 NESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1518
Query: 582 IQLSNKPSSN--EYGHSVECLQAVEQH 606
+ K S + H+ +CL + H
Sbjct: 1519 LDRPEKGLSEREQLEHTRQCLIKIGDH 1545
Score = 48 (22.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 489 EEKKDID---KRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK----FK 541
EEK + D K+ E+K E K++ ++ K + DK + E ++ EK K
Sbjct: 1389 EEKPEPDVCIKKEPEEKR--EAKEKENKRELKREI--KEKEDKKDIKEKDFKEKRENKVK 1444
Query: 542 E-LERDRDVRLENL-----EALHVASMKKLSD 567
E +++++D++ E L E+ + LSD
Sbjct: 1445 EAIQKEKDIKEEKLNESKSESKERSKKSSLSD 1476
Score = 41 (19.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 885 KVPESSPGEI-VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPV 932
KV E+ E ++ +N K+E+ + ++ + P+H + P+P+
Sbjct: 1442 KVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPI 1490
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 194 (73.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 85/289 (29%), Positives = 130/289 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 826 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 885
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R L Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 886 DLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 945
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 946 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 1003
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1004 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1057
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTI 300
E++E+ R NC Q S G EG+ SR++ + DS +I
Sbjct: 1058 ---ELEEIYMLPRM--RNCAKQISFN-G-SEGRR-SRNRRYSGSDSDSI 1098
Score = 61 (26.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 26/115 (22%), Positives = 54/115 (46%)
Query: 394 DHKESLE--LAKKHLHFSCK-KGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEI 450
D KE+++ + KH + K +G+++ C+K+ E K +K + N R + EI
Sbjct: 1365 DKKENMDEITSVKHPNKKIKTEGDSEEKPEPDVCIKK--EPEEKREAKEKENKRELKREI 1422
Query: 451 VSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL 505
+++ + +KDF K+ ++ ++ ++L E K K +K+ L
Sbjct: 1423 -KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKE-RSKKSSL 1475
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 33/147 (22%), Positives = 69/147 (46%)
Query: 470 RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKL 529
R ++K K+ K K+ E+KKDI ++ ++K + + K+ + ++ +KL
Sbjct: 1407 REAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQK-------EKDIKEEKL 1459
Query: 530 KVLENEYAEKFKELE-RDRDVRLE-NLEALHVASMKKLSDKQTSWV--EQ---VKSWL-Q 581
++E E+ K+ D V + + E + ++ + D++T + E+ VK+ L Q
Sbjct: 1460 NESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1519
Query: 582 IQLSNKPSSN--EYGHSVECLQAVEQH 606
+ K S + H+ +CL + H
Sbjct: 1520 LDRPEKGLSEREQLEHTRQCLIKIGDH 1546
Score = 48 (22.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 489 EEKKDID---KRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK----FK 541
EEK + D K+ E+K E K++ ++ K + DK + E ++ EK K
Sbjct: 1390 EEKPEPDVCIKKEPEEKR--EAKEKENKRELKREI--KEKEDKKDIKEKDFKEKRENKVK 1445
Query: 542 E-LERDRDVRLENL-----EALHVASMKKLSD 567
E +++++D++ E L E+ + LSD
Sbjct: 1446 EAIQKEKDIKEEKLNESKSESKERSKKSSLSD 1477
Score = 41 (19.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 885 KVPESSPGEI-VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPV 932
KV E+ E ++ +N K+E+ + ++ + P+H + P+P+
Sbjct: 1443 KVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPI 1491
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 207 (77.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 86/288 (29%), Positives = 132/288 (45%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 827 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 886
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 887 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 946
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+T T N +E S IL GE+ + ++ +I ILK +++ G
Sbjct: 947 GSTPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGP 1004
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I ++ W+ SQ R+R++ ++ QK
Sbjct: 1005 LTVGDELLSQFKVANFSNMDEDDIELEPERNSRN--WEEIIPESQ--RRRIEE-EERQK- 1058
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSST 299
E++E+ R NC Q S G E ++ SR G+ DS T
Sbjct: 1059 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDSIT 1100
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 593 YGHSVECLQAVEQHNAHENLENNASNSI 620
Y H+++ Q +QHN +N+ +N + +
Sbjct: 1498 YKHAIKKRQESQQHN-DQNISSNVNTHV 1524
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/106 (21%), Positives = 46/106 (43%)
Query: 601 QAVEQHNAHENLENNASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLN 660
Q E+ + ++ E+N N I +N +K I P+ L++PV + P+ ++
Sbjct: 1355 QPSEKSDEDDDEEDNKVNEIK---SENKEKSKKI--PL-----LDTPVHITATSEPVPIS 1404
Query: 661 NGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLNPCSREQI 706
++LD + + + KER+ + Q + REQ+
Sbjct: 1405 EESEELD-----QKTFSVCKERMRPVKAALKQLDRPEKGLSEREQL 1445
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 195 (73.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 84/286 (29%), Positives = 128/286 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 843 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 902
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 903 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 962
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 963 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGP 1020
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1021 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1074
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDS 297
E++E+ R NC Q S G E ++ SR G+ DS
Sbjct: 1075 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDS 1114
Score = 58 (25.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 18/83 (21%), Positives = 39/83 (46%)
Query: 424 CLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKL 483
C+K+ E K +K + N R + EI +++ + +KDF K+ ++ +
Sbjct: 1409 CIKK--EPEEKREAKEKENKRELKREI-KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDI 1465
Query: 484 RHKQLEEKKDIDKRYEEQKAQLE 506
+ ++L E K K ++ + L+
Sbjct: 1466 KEEKLSESKSESKERSKKSSVLD 1488
Score = 52 (23.4 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 31/155 (20%), Positives = 74/155 (47%)
Query: 428 VFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQ 487
+ +L +D++K ++ RLS + R+ K + +SI+ ++++ + + L +
Sbjct: 1319 LIKLLSRDLAKKEAQ-RLSGAGGSKRRKARAK--KNKAMKSIK-VKEEIKSDSSPLPSDK 1374
Query: 488 LEEKKDIDK----RYEEQKAQLE--TKKRTEAAV-IRYHCNGKMQMDKLKVLENEYAEKF 540
+E D D+ ++ +K + E ++++TE V I+ K + K K + E +
Sbjct: 1375 SDEDDDKDEITSVKHPNKKIKTERDSEEKTEPDVCIKKEPEEKREA-KEKENKRELKREI 1433
Query: 541 KELERDRDVRLENLEALHVASMKKLSDKQTSWVEQ 575
KE E +D++ ++ + +K+ K+ E+
Sbjct: 1434 KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEE 1468
Score = 37 (18.1 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 436 VSKYQSNARLSQSEIVSHRQEL 457
+S Q NA+L ++SH +EL
Sbjct: 1214 ISGVQVNAKL----VISHEEEL 1231
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 194 (73.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 85/289 (29%), Positives = 130/289 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 825 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 884
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R L Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 885 DLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 944
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 945 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 1002
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1003 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1056
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTI 300
E++E+ R NC Q S G EG+ SR++ + DS +I
Sbjct: 1057 ---ELEEIYMLPRM--RNCAKQISFN-G-SEGRR-SRNRRYSGSDSDSI 1097
Score = 58 (25.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 26/120 (21%), Positives = 55/120 (45%)
Query: 387 SLRKQKIDHKESLELAKKHLHFSCK-KGEADYVYSLLQCLKEVFELSMKDVSKYQSNARL 445
S + + D K+ + + KH + K +G+++ C+K+ E K +K + N R
Sbjct: 1356 SEKSDEDDDKDEIT-SVKHPNKKIKTEGDSEEKPEPDVCIKK--EPEEKREAKEKENKRE 1412
Query: 446 SQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL 505
+ EI +++ + +KDF K+ ++ ++ ++L E K K +K+ L
Sbjct: 1413 LKREI-KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSESKE-RSKKSSL 1470
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 34/149 (22%), Positives = 66/149 (44%)
Query: 432 SMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEK 491
+MK + K + + S + S + + + KD S++ KK + + EEK
Sbjct: 1337 AMKSI-KVKEEIKSDSSPLPSEKSD--EDDDKDEITSVKHPNKKIKTE------GDSEEK 1387
Query: 492 KDID---KRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK----FKE-L 543
+ D K+ E+K E K++ ++ K + DK + E ++ EK KE +
Sbjct: 1388 PEPDVCIKKEPEEKR--EAKEKENKRELKREI--KEKEDKKDIKEKDFKEKRENKVKEAI 1443
Query: 544 ERDRDVRLENL-----EALHVASMKKLSD 567
++++D++ E L E+ + LSD
Sbjct: 1444 QKEKDIKEEKLNESKSESKERSKKSSLSD 1472
Score = 50 (22.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 33/147 (22%), Positives = 69/147 (46%)
Query: 470 RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKL 529
R ++K K+ K K+ E+KKDI ++ ++K + + K+ + ++ +KL
Sbjct: 1402 REAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQK-------EKDIKEEKL 1454
Query: 530 KVLENEYAEKFKELE-RDRDVRLE-NLEALHVASMKKLSDKQTSWV--EQ---VKSWL-Q 581
++E E+ K+ D V + + E + ++ + D++T + E+ VK+ L Q
Sbjct: 1455 NESKSESKERSKKSSLSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQ 1514
Query: 582 IQLSNKPSSN--EYGHSVECLQAVEQH 606
+ K S + H+ +CL + H
Sbjct: 1515 LDRPEKGLSEREQLEHTRQCLIKIGDH 1541
Score = 41 (19.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 885 KVPESSPGEI-VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPV 932
KV E+ E ++ +N K+E+ + ++ + P+H + P+P+
Sbjct: 1438 KVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVHITASGEPVPI 1486
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 195 (73.7 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 84/286 (29%), Positives = 128/286 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 831 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 890
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 891 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 950
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 951 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 1008
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1009 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1062
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDS 297
E++E+ R NC Q S G E ++ SR G+ DS
Sbjct: 1063 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDS 1102
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 190 (71.9 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 79/260 (30%), Positives = 119/260 (45%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF F+FLL TRA + L++ VI SD++P N
Sbjct: 394 SYERVDGSVRGEERHLAIKNFGQ-QPIFIFLLSTRAGGVGMNLTAADTVIFVDSDFNPQN 452
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q + +KV RL TVEE I+ ++ + + +F Q
Sbjct: 453 DLQAAARAHRIGQNKSVKVIRLIGRDTVEE---IICRKAASKLKLTNTIIEGGRFTLGAQ 509
Query: 149 ATFFEQTL-LNDVVQ-EFSTILTQNGEDNDTRKFNIIL-KVKQSQGTYSTSFPLFGESKV 205
E L L+++++ +L+ G D IL + K Q S + P E
Sbjct: 510 RPAAEADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWI-SDALPSTEEGSR 568
Query: 206 EGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRR 265
E +E + H++ L EGK Y S+ RK + +LQK + E ++ R
Sbjct: 569 E-QEEGKNHMY---LFEGKD----YSKEPSKEDRKSFEQLVNLQKT----LLEKTGQEGR 616
Query: 266 VASNCVNQSSLKPGLEEGKT 285
+ N S L PGL EG T
Sbjct: 617 LLRN--KGSVLIPGLVEGST 634
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 195 (73.7 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 84/286 (29%), Positives = 128/286 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 813 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 872
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 873 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 932
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 933 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 990
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 991 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1044
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDS 297
E++E+ R NC Q S G E ++ SR G+ DS
Sbjct: 1045 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDS 1084
Score = 53 (23.7 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 31/155 (20%), Positives = 74/155 (47%)
Query: 428 VFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQ 487
+ +L +D++K ++ RLS + R+ K + +SI+ ++++ + + L ++
Sbjct: 1291 LIKLLSRDLAKKEAQ-RLSGAGGSKRRKARAK--KNKAMKSIK-VKEEMKSDSSPLPSEK 1346
Query: 488 LEEKKDIDK----RYEEQKAQLE--TKKRTEAAV-IRYHCNGKMQMDKLKVLENEYAEKF 540
+E D D+ ++ +K + E +++R E V I+ K + K K + E +
Sbjct: 1347 SDEDDDKDEITSVKHPNKKIKTERDSEERPEPDVFIKKESEEKREA-KEKENKRELKREI 1405
Query: 541 KELERDRDVRLENLEALHVASMKKLSDKQTSWVEQ 575
KE E +D++ ++ + +K+ K+ E+
Sbjct: 1406 KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEE 1440
Score = 52 (23.4 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 35/154 (22%), Positives = 71/154 (46%)
Query: 463 KDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNG 522
K S R ++K K+ K K+ E+KKDI ++ ++K + + K+ +
Sbjct: 1383 KKESEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQK-------EK 1435
Query: 523 KMQMDKLKVLENEYAEKFKELE-RDRDVRLE-NLEALHVASMKKLSDKQTSWV--EQ--- 575
++ +KL ++E E+ K+ D V + + E + ++ + D++T + E+
Sbjct: 1436 DIKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRP 1495
Query: 576 VKSWL-QIQLSNKPSSN--EYGHSVECLQAVEQH 606
VK+ L Q+ K S + H+ +CL + H
Sbjct: 1496 VKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDH 1529
Score = 49 (22.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 430 ELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLE 489
E K +K + N R + EI +++ + +KDF K+ ++ ++ ++L
Sbjct: 1385 ESEEKREAKEKENKRELKREI-KEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLN 1443
Query: 490 EKKDIDKRYEEQKA 503
E K K ++ +
Sbjct: 1444 ESKSESKERSKKSS 1457
Score = 41 (19.5 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 885 KVPESSPGEI-VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPV 932
KV E+ E ++ +N K+E+ + ++ + P+H + P+P+
Sbjct: 1426 KVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPI 1474
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 192 (72.6 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 114/479 (23%), Positives = 192/479 (40%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1290
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDL------QKKPELEI-DE 258
EE P + E + P W ++ R + ++ + + E++ D
Sbjct: 1291 RREEARNPKRKPRLMEEDELPSW-IIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDS 1349
Query: 259 VAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETS 318
+ +KQ A ++ + + K+ + K + SST ++ST + E S
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSST-----PTTSTRSRDKDEES 1404
Query: 319 REXXXXXXXXXXXXXPEMAKLCEVLKLREDV----KDTVGKFLEYLMINHRVDREPPSML 374
++ P L + +K D KD+ G+ L + I +E P
Sbjct: 1405 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYY 1464
Query: 375 QAFEISLCWTAASLRKQKI-DHK-ESLELAKKHLHFSCKKG-----EADYVYSLLQCLKE 427
+ + + K++I +HK SL +K + C+ E +Y L+
Sbjct: 1465 ELIRKPVDFKKI---KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQS 1521
Query: 428 VFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHK 486
VF + + K S+ E +E + + SRS++ K +K+ A+ R K
Sbjct: 1522 VFTSVRQKIEKEDD----SEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLK 1576
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 192 (72.6 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 114/479 (23%), Positives = 192/479 (40%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1290
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDL------QKKPELEI-DE 258
EE P + E + P W ++ R + ++ + + E++ D
Sbjct: 1291 RREEARNPKRKPRLMEEDELPSW-IIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDS 1349
Query: 259 VAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETS 318
+ +KQ A ++ + + K+ + K + SST ++ST + E S
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSST-----PTTSTRSRDKDEES 1404
Query: 319 REXXXXXXXXXXXXXPEMAKLCEVLKLREDV----KDTVGKFLEYLMINHRVDREPPSML 374
++ P L + +K D KD+ G+ L + I +E P
Sbjct: 1405 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYY 1464
Query: 375 QAFEISLCWTAASLRKQKI-DHK-ESLELAKKHLHFSCKKG-----EADYVYSLLQCLKE 427
+ + + K++I +HK SL +K + C+ E +Y L+
Sbjct: 1465 ELIRKPVDFKKI---KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQS 1521
Query: 428 VFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHK 486
VF + + K S+ E +E + + SRS++ K +K+ A+ R K
Sbjct: 1522 VFTSVRQKIEKEDD----SEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLK 1576
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 183 (69.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 51/148 (34%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + VIIF SDW+P
Sbjct: 1067 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQ 1126
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1127 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1174
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1175 AGMFDQKSSSHERRAFLQAILEHEEENE 1202
Score = 60 (26.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 35/165 (21%), Positives = 76/165 (46%)
Query: 393 IDHKESL--ELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDV---SKYQSNARLSQ 447
I++K+S +L++ + +K +Y Y L++ K V +K+ KY+S L +
Sbjct: 1369 INYKDSSGRQLSEVFIQLPSRKELPEY-YELIR--KPVDFKKIKERIRNHKYRSLGDLEK 1425
Query: 448 SE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKA 503
++ H + F + + + SI + + K ++++AK + E D D+ EE+
Sbjct: 1426 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNDDEDEDDEEES- 1484
Query: 504 QLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRD 548
E++ ++ I+ + + +K K + + K K + D D
Sbjct: 1485 --ESESKSVKVKIKLNKKDEKSREKGKGKKRQSRAKAKPVVSDDD 1527
Score = 38 (18.4 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E ED ++ D E++E
Sbjct: 1457 SARQKIAK-EEESEDESNDDEDEDDE 1481
Score = 37 (18.1 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 469 IRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+R I+ ++M + +R K+ + ++++DK ++ + K+R
Sbjct: 1300 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDSGKEDGEKAKKRR 1342
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 179 (68.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 52/149 (34%), Positives = 73/149 (48%)
Query: 27 SDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWS 85
S ++R+DG++ K+ A+ FN S F FLL T+A I LS+ VIIF SDW+
Sbjct: 1105 SFQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWN 1164
Query: 86 PVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQP 145
P NDL+A R Q + ++RL S +VEE +L AKQ D ++ M K Q
Sbjct: 1165 PQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKMVLDHLV--IQTMEKSQT 1222
Query: 146 LVQATFFEQTLLNDVVQEFSTILTQNGED 174
T + N +E IL E+
Sbjct: 1223 AKSNTPNNSNVFNK--EELEAILKFGAEE 1249
Score = 66 (28.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 28/146 (19%), Positives = 65/146 (44%)
Query: 450 IVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKK 509
++ +++ K K S+ + +++ + ++ K R ++ +E K++ K ETK+
Sbjct: 1552 LLKSAKDISKTTNKKSSKQTKE-KEEGEFKIPKKRGRKSKEIKEVSNNNHNNK---ETKE 1607
Query: 510 RTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
+ N ++ + N+Y++ + + D+D +N E KK K
Sbjct: 1608 NNNGDNNNNNNNNNSSNNRKRTTNNKYSDDDDDDDNDKDN--DNDEDYMEEEEKKEKTKN 1665
Query: 570 TSWVEQVKSW-LQIQLSNKPSSNEYG 594
T +++KS LQ ++ + P +G
Sbjct: 1666 TRTKKRIKSEELQKEILS-PKKTSFG 1690
Score = 51 (23.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 32/127 (25%), Positives = 50/127 (39%)
Query: 576 VKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNH-DKLINI 634
V +W IQ K +S +G +E +A N SN + +A Q D L+
Sbjct: 1501 VSNWESIQ---KDTSLGFGDIIEIDNTAPLLDA--NGVPIPSNKLKGAALQRRVDSLLKS 1555
Query: 635 ITPVSGE-GRLESPVIQETVAGPLRL-NNGGDKLDTIASAEASIAGLKERIEDSNSGDNQ 692
+S + S +E G ++ G K I + KE +++N+GDN
Sbjct: 1556 AKDISKTTNKKSSKQTKEKEEGEFKIPKKRGRKSKEIKEVSNNNHNNKET-KENNNGDNN 1614
Query: 693 ENNEPLN 699
NN N
Sbjct: 1615 NNNNNNN 1621
Score = 43 (20.2 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 543 LERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPS-----SNEYGHSV 597
L+R D L++ + + + KK S KQT E+ + + + K SN ++
Sbjct: 1545 LQRRVDSLLKSAKDISKTTNKK-SSKQTKEKEEGEFKIPKKRGRKSKEIKEVSNNNHNNK 1603
Query: 598 ECLQAVEQHNAHENLENNASNS 619
E + N + N NN+SN+
Sbjct: 1604 ETKENNNGDNNNNNNNNNSSNN 1625
Score = 42 (19.8 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 33/160 (20%), Positives = 66/160 (41%)
Query: 441 SNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEE 500
SN+ S S S R + + ++D + + +KCQ+ ++ ++ + LE + + +
Sbjct: 1753 SNSSSSSSS--SSRNKNHESDEEDDKYYDKNLLRKCQQYLSPIK-ELLENFRSLS----D 1805
Query: 501 QKAQLETKKRTEAAVIRYHCN-GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHV 559
K Q+ +++ +Y + GK + +L+ + + K+L+ A
Sbjct: 1806 SKVQISREEKVSKTK-KYLLSLGK---EISIILDEKKSANIKDLDSHLWYSASKYTASGG 1861
Query: 560 ASMKKLSDKQ---TSWVEQVKSWLQIQLSNKPSSNEYGHS 596
+K L DK +S S + SN SSN S
Sbjct: 1862 KELKSLYDKMKKSSSSNNDSSSSSSSRSSNSSSSNNSNSS 1901
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 185 (70.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 83/294 (28%), Positives = 123/294 (41%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 375 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 434
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 435 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 482
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 483 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 542
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSS---------------QGSR--KRVQYFDDL 248
EE P + E + P W + +GSR K V Y D L
Sbjct: 543 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSL 602
Query: 249 QKKPELE------IDEVAK--KQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTS 294
+K L+ ++E+ + +Q++ + S P T SRDK+ S
Sbjct: 603 TEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDES 656
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 191 (72.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 836 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 895
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 896 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 938
Score = 51 (23.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 45/211 (21%), Positives = 85/211 (40%)
Query: 399 LELAKKHLHF--SCKKGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQE 456
L+L KK L + K GE + +K+ E V N LS ++ E
Sbjct: 1322 LKLLKKDLEKKENMKDGEEGKLKKRKPRVKK--ENKAPKVKDEHGN-ELSPPRHSDNQSE 1378
Query: 457 LFKVAQKDFSRS-IRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAV 515
+V +S ++ QKK K+ + + KQ KK+ + E++K + E K++ +
Sbjct: 1379 EGEVKDDGLDKSPVKKKQKK--KENKENKEKQTSSKKEKESDKEKKKTK-EKKEKPKGGE 1435
Query: 516 IRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQ 575
+ GK + + E + D D+ E ++ M+ + K +++
Sbjct: 1436 AKSGSKGKRSQGPVHITAGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDK 1492
Query: 576 VKSWLQIQLSNKPSSN---EYGHSV-ECLQA 602
L +Q + + N + G + ECL+A
Sbjct: 1493 PDKGLTVQEQLEHTRNCLLKIGDRISECLKA 1523
Score = 41 (19.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 474 KKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKK 509
+K K + K+ HK+ ++++ K+ E+ + KK
Sbjct: 1550 RKLHK-LYKMAHKKRSQEEEEQKKKEDMASMPSMKK 1584
Score = 41 (19.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 49/217 (22%), Positives = 90/217 (41%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE ++ K+ +G K+ +
Sbjct: 1157 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQE-YEEQLKENPGERKGPGKR-RGPTI 1214
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQL---------ETKK-RTEAAVIRYHCN---GKMQMDK 528
K+ Q+ K I ++EE+ L E KK R V H + G + +
Sbjct: 1215 KISGVQVNVKSII--QHEEEFEMLHKSIPADPEERKKYRLTCRVKAAHFDVDWGVEEDSR 1272
Query: 529 LKV--LENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSW-VEQVKSWLQIQLS 585
L V E+ Y ++ ++ D +++L + + L V + KK KQ V+ + L+ L
Sbjct: 1273 LLVGIYEHGYGN-WELIKTDPELKLSD-KILPVETDKKPQGKQLQTRVDYLLKLLKKDLE 1330
Query: 586 NKPS--SNEYGHSVECLQAVEQHNAHENLENNASNSI 620
K + E G + V++ N +++ N +
Sbjct: 1331 KKENMKDGEEGKLKKRKPRVKKENKAPKVKDEHGNEL 1367
>UNIPROTKB|H0YGM3 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 EMBL:AC011442
EMBL:AC011485 EMBL:AC006127 HGNC:HGNC:11100 ChiTaRS:SMARCA4
PRIDE:H0YGM3 Ensembl:ENST00000538456 Bgee:H0YGM3 Uniprot:H0YGM3
Length = 427
Score = 179 (68.1 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 59/184 (32%), Positives = 84/184 (45%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 3 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 62
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 63 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 110
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 111 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 170
Query: 208 MDEE 211
EE
Sbjct: 171 RREE 174
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 184 (69.8 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 69/264 (26%), Positives = 125/264 (47%)
Query: 30 YERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y+R+DG++ ++ A+ FN+ S FVFLL TRA I L++ VIIF SDW+P N
Sbjct: 629 YDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHN 688
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRP-MAKFQPLV 147
D++A R Q +++ ++R + +VEE+++ +AK +RP M
Sbjct: 689 DVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLV--VRPGMGGM---- 742
Query: 148 QATFFEQTLLNDVVQEFSTILTQNGEDN----DTR-------KFNIILKVKQSQGT-YST 195
T F + L D+++ + L ++G+ D + + N ++ K+S Y +
Sbjct: 743 -TTNFSKDELEDILRFGTEDLFKDGKSEAIHYDDKAVADLLDRTNRGIEEKESWANEYLS 801
Query: 196 SFPLFGESKVEGMDEERPHIFWTNLLEGKHPC-WKYYSGSSQGSRKRVQYFDDLQKKPEL 254
SF + + E +E H + N E P W+ G SQ + Q Q ++
Sbjct: 802 SFKVASYATKEDHEE---HDDYNNDAENTDPFYWENLMGKSQPKLPKKQKKQSQQS--QV 856
Query: 255 EIDEVAKKQRRVASNCVNQSSLKP 278
+++ + K +R+ ++ S+ P
Sbjct: 857 DVESIMGKGKRIRKE-IDYSNQYP 879
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 182 (69.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1075 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1134
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1135 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1182
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1183 AGMFDQKSSSHERRAFLQAILEHEEENE 1210
Score = 57 (25.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 37/167 (22%), Positives = 77/167 (46%)
Query: 393 IDHKESL--ELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDV---SKYQSNARLSQ 447
I++K+S +L++ + +K +Y Y L++ K V +K+ KY+S L +
Sbjct: 1377 INYKDSSGRQLSEVFIQLPSRKELPEY-YELIR--KPVDFKKIKERIRNHKYRSLGDLEK 1433
Query: 448 SE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKA 503
++ H + F + + + SI + + K ++++AK EE +D EE++
Sbjct: 1434 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE-----EESEDESNEEEEEED 1488
Query: 504 QLETKKRTEAAVIRYHCNGKMQM--DKLKVLENEYAEKFKELERDRD 548
+ E++ ++ ++ N K + DK K + K K + D D
Sbjct: 1489 EEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFD 1535
Score = 39 (18.8 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E ++SN + +E+ E
Sbjct: 1465 SARQKIAKEEESEDESNEEEEEEDEE 1490
Score = 37 (18.1 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 469 IRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+R I+ ++M + +R K+ + ++++DK ++ + K+R
Sbjct: 1308 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRR 1350
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 182 (69.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1077 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1136
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1137 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1184
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1185 AGMFDQKSSSHERRAFLQAILEHEEENE 1212
Score = 57 (25.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 37/167 (22%), Positives = 77/167 (46%)
Query: 393 IDHKESL--ELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDV---SKYQSNARLSQ 447
I++K+S +L++ + +K +Y Y L++ K V +K+ KY+S L +
Sbjct: 1379 INYKDSSGRQLSEVFIQLPSRKELPEY-YELIR--KPVDFKKIKERIRNHKYRSLGDLEK 1435
Query: 448 SE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKA 503
++ H + F + + + SI + + K ++++AK EE +D EE++
Sbjct: 1436 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE-----EESEDESNEEEEEED 1490
Query: 504 QLETKKRTEAAVIRYHCNGKMQM--DKLKVLENEYAEKFKELERDRD 548
+ E++ ++ ++ N K + DK K + K K + D D
Sbjct: 1491 EEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFD 1537
Score = 39 (18.8 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E ++SN + +E+ E
Sbjct: 1467 SARQKIAKEEESEDESNEEEEEEDEE 1492
Score = 37 (18.1 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 469 IRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+R I+ ++M + +R K+ + ++++DK ++ + K+R
Sbjct: 1310 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRR 1352
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 182 (69.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1077 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1136
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1137 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1184
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1185 AGMFDQKSSSHERRAFLQAILEHEEENE 1212
Score = 57 (25.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 37/167 (22%), Positives = 77/167 (46%)
Query: 393 IDHKESL--ELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDV---SKYQSNARLSQ 447
I++K+S +L++ + +K +Y Y L++ K V +K+ KY+S L +
Sbjct: 1379 INYKDSSGRQLSEVFIQLPSRKELPEY-YELIR--KPVDFKKIKERIRNHKYRSLGDLEK 1435
Query: 448 SE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKA 503
++ H + F + + + SI + + K ++++AK EE +D EE++
Sbjct: 1436 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE-----EESEDESNEEEEEED 1490
Query: 504 QLETKKRTEAAVIRYHCNGKMQM--DKLKVLENEYAEKFKELERDRD 548
+ E++ ++ ++ N K + DK K + K K + D D
Sbjct: 1491 EEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFD 1537
Score = 39 (18.8 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E ++SN + +E+ E
Sbjct: 1467 SARQKIAKEEESEDESNEEEEEEDEE 1492
Score = 37 (18.1 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 469 IRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+R I+ ++M + +R K+ + ++++DK ++ + K+R
Sbjct: 1310 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRR 1352
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 185 (70.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 83/294 (28%), Positives = 123/294 (41%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1115 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1174
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1175 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1222
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1223 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1282
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSS---------------QGSR--KRVQYFDDL 248
EE P + E + P W + +GSR K V Y D L
Sbjct: 1283 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSL 1342
Query: 249 QKKPELE------IDEVAK--KQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTS 294
+K L+ ++E+ + +Q++ + S P T SRDK+ S
Sbjct: 1343 TEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDES 1396
>UNIPROTKB|B5MDZ7 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:AL356378 GO:GO:0003676 GO:GO:0004386
InterPro:IPR002589 PROSITE:PS51154 HGNC:HGNC:1916 ChiTaRS:CHD1L
IPI:IPI00400835 ProteinModelPortal:B5MDZ7 SMR:B5MDZ7 STRING:B5MDZ7
PRIDE:B5MDZ7 Ensembl:ENST00000361293 HOGENOM:HOG000074191
HOVERGEN:HBG104833 ArrayExpress:B5MDZ7 Bgee:B5MDZ7 Uniprot:B5MDZ7
Length = 616
Score = 181 (68.8 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 81/261 (31%), Positives = 114/261 (43%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF FVFLL TRA + L++ VI SD++P N
Sbjct: 108 SYERVDGSVRGEERHLAIKNFGQ-QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQN 166
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA--KQDKTPDGYAQNMRPMAKFQPL 146
DL+A R Q + +KV RL TVEE V A K T + +P
Sbjct: 167 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPA 226
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGEDNDTRKFNIIL-KVKQSQGTYSTSFPLFGESK 204
A L+++++ +L G D IL + K Q S + P E
Sbjct: 227 ADADL----QLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWV-SDALPA-AEGG 280
Query: 205 VEGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQR 264
+E + H++ L EGK Y S+ RK + +LQK + E A ++
Sbjct: 281 SRDQEEGKNHMY---LFEGKD----YSKEPSKEDRKSFEQLVNLQKT----LLEKASQEG 329
Query: 265 RVASNCVNQSSLKPGLEEGKT 285
R N S L PGL EG T
Sbjct: 330 RSLRN--KGSVLIPGLVEGST 348
Score = 47 (21.6 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQK 502
QKK Q+ AK R + +EEKK + E +K
Sbjct: 363 QKKRQEAAAK-RRRLIEEKKRQKEEAEHKK 391
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 184 (69.8 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 121/490 (24%), Positives = 192/490 (39%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1290
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSS---------------QGSR--KRVQYFDDL 248
EE P + E + P W + +GSR K V Y D L
Sbjct: 1291 RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSL 1350
Query: 249 QKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSS 308
+K L KQ + A ++ + + K+ + K + SST ++S
Sbjct: 1351 TEKQWL-------KQLKAAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSST-----PTTS 1398
Query: 309 TLVNNFPETSREXXXXXXXXXXXXXPEMAKLCEVLKLREDV----KDTV-GKFLEYLMIN 363
T + E S++ P L + +K D KD+ G+ L + I
Sbjct: 1399 TRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQ 1458
Query: 364 HRVDREPPSMLQAFEISLCWTAASLRKQKI-DHK-ESLELAKKHLHFSCKKG-----EAD 416
+E P + + + K++I +HK SL +K + C+ E
Sbjct: 1459 LPSRKELPEYYELIRKPVDFKKI---KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGS 1515
Query: 417 YVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKC 476
+Y L+ VF + + K S+ E +E + + SRS++ K
Sbjct: 1516 LIYEDSIVLQSVFTSVRQKIEKEDD----SEGEESEEEEEGEEEGSESESRSVKVKIKLG 1571
Query: 477 QKQMAKLRHK 486
+K+ A+ R K
Sbjct: 1572 RKEKAQDRLK 1581
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 177 (67.4 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1086 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1145
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1146 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1183
Score = 62 (26.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 490 EKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDV 549
EK ++ +R EE + E K TE + K +D ++ + EK KE E +DV
Sbjct: 1622 EKAEVKERTEEPM-ETEAKGTTEVEKVEE----KSAVDLTPIVVEDKEEK-KEEEEKKDV 1675
Query: 550 RLENLEALHVASMKKLSDKQ 569
L+N E + K LSD++
Sbjct: 1676 MLQNGE-----TPKDLSDEK 1690
Score = 56 (24.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1766 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1822
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1823 TRFAEVECLAESHQHLSKESMAGNKPANAV 1852
Score = 42 (19.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCN 521
K K+ EEKKD+ + E L +K+ + + R+ N
Sbjct: 1663 KEEKKEEEEKKDVMLQNGETPKDLSDEKQKKNSKQRFMFN 1702
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 183 (69.5 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 114/480 (23%), Positives = 192/480 (40%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1290
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDL------QKKPELEI-DE 258
EE P + E + P W ++ R + ++ + + E++ D
Sbjct: 1291 RREEARNPKRKPRLMEEDELPSW-IIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDS 1349
Query: 259 VAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETS 318
+ +KQ A ++ + + K+ + K + SST ++ST + E S
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSST-----PTTSTRSRDKDEES 1404
Query: 319 REXXXXXXXXXXXXXPEMAKLCEVLKLREDV----KDTV-GKFLEYLMINHRVDREPPSM 373
++ P L + +K D KD+ G+ L + I +E P
Sbjct: 1405 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY 1464
Query: 374 LQAFEISLCWTAASLRKQKI-DHK-ESLELAKKHLHFSCKKG-----EADYVYSLLQCLK 426
+ + + K++I +HK SL +K + C+ E +Y L+
Sbjct: 1465 YELIRKPVDFKKI---KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ 1521
Query: 427 EVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHK 486
VF + + K S+ E +E + + SRS++ K +K+ A+ R K
Sbjct: 1522 SVFTSVRQKIEKEDD----SEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLK 1577
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 191 (72.3 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 836 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 895
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 896 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 938
Score = 41 (19.5 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 987 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1046
Query: 219 NLL 221
++
Sbjct: 1047 EII 1049
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 182 (69.1 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1100 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1159
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1160 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1207
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1208 AGMFDQKSSSHERRAFLQAILEHEEENE 1235
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 177 (67.4 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1093 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1152
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1153 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1190
Score = 61 (26.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 33/143 (23%), Positives = 64/143 (44%)
Query: 434 KDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKD 493
+D K + N+ L + E V +E+ A + + + + + ++EEK +
Sbjct: 1561 EDGIKIEENS-LKEEESVEGEKEVKSTAPEATVECTQPPAPASEDEKVLVEPPEVEEKVE 1619
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLEN 553
+ E + +ET+ + A V + K +D ++ + EK KE E ++V L+N
Sbjct: 1620 KAEVKERTEEPMETEPKGVADVEKVE--EKSAVDLTPIVVEDKEEK-KEEEEKKEVMLQN 1676
Query: 554 LEALHVASMKKLSD-KQTSWVEQ 575
E + K L+D KQ ++Q
Sbjct: 1677 GE-----TPKDLNDEKQKKNIKQ 1694
Score = 56 (24.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1763 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1819
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1820 TRFAEVECLAESHQHLSKESMAGNKPANAV 1849
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 177 (67.4 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1113 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1172
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1173 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1210
Score = 61 (26.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 33/143 (23%), Positives = 64/143 (44%)
Query: 434 KDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKD 493
+D K + N+ L + E V +E+ A + + + + + ++EEK +
Sbjct: 1581 EDGIKIEENS-LKEEESVEGEKEVKSTAPEATVECTQPPAPASEDEKVLVEPPEVEEKVE 1639
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLEN 553
+ E + +ET+ + A V + K +D ++ + EK KE E ++V L+N
Sbjct: 1640 KAEVKERTEEPMETEPKGVADVEKVE--EKSAVDLTPIVVEDKEEK-KEEEEKKEVMLQN 1696
Query: 554 LEALHVASMKKLSD-KQTSWVEQ 575
E + K L+D KQ ++Q
Sbjct: 1697 GE-----TPKDLNDEKQKKNIKQ 1714
Score = 56 (24.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1783 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1839
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1840 TRFAEVECLAESHQHLSKESMAGNKPANAV 1869
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 191 (72.3 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 816 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 875
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 876 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 918
Score = 54 (24.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 44/209 (21%), Positives = 82/209 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + +E+K + K++ + + K + +
Sbjct: 1372 KKQKKKENKENKEKQMSSRKDKEGD-KERKRSKDKKEKPKGGDAKSSSKSKRSQGPVHIT 1430
Query: 533 ENEYAEKFKELERDRDVRLENLEAL--HVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS 590
E E D D+ E + +KK KQ ++ S +Q QL + S
Sbjct: 1431 AGSEPVPIGEDEED-DLDQETFSICKERMRPVKKAL-KQLDKPDKGLS-VQEQLEHTRSC 1487
Query: 591 N-EYGHSV-ECLQAV--EQHNA--HENLENNASNSIHISAGQNHDKLINIITPVSGEGRL 644
+ G + ECL+A ++H NL S A + H KL + +
Sbjct: 1488 LLKIGDRIAECLKAYSDQEHTKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1546
Query: 645 ESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E ++ + G P R G D++ S
Sbjct: 1547 EQKKKEDVIGGKKPFRPEASGSSRDSLMS 1575
Score = 45 (20.9 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 38/163 (23%), Positives = 71/163 (43%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1135 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1192
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQL--------ETKKR--TEAAVIRYHCNGKMQMDK--- 528
K+ Q+ K I ++EE+ L E KK+ V H + + ++
Sbjct: 1193 KISGVQVNVKSII--QHEEEFEMLHKSIPVDPEEKKKYCLSCRVKAAHFDVEWGVEDDSR 1250
Query: 529 --LKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
L + E+ Y ++ ++ D +++L + + L V + KK KQ
Sbjct: 1251 LLLGIYEHGYGN-WELIKTDPELKLTDKKILPVETDKKPQGKQ 1292
Score = 40 (19.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEGM----DEE----RPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV DEE RPH W
Sbjct: 967 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELDERPHKDWD 1026
Query: 219 NLL 221
++
Sbjct: 1027 EII 1029
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+K K + K+ E K++ +K+ +K + K+R
Sbjct: 1366 EKSPTKKKQKKKENKENKEKQMSSRKDKEGDKER 1399
Score = 38 (18.4 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L ++P + DE+ +++R V + + LEE + R + T
Sbjct: 1015 EELDERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1059
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 182 (69.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 38/98 (38%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V ++ A+ FN G+ +FVFLL TRA I L++ VII+ SDW+P N
Sbjct: 1103 YERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1162
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1163 DIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKK 1200
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + ++ PS N
Sbjct: 1806 EPFKGEMSRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMTEDPSHPSMALN 1862
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1863 TRFSEVECLAESHQHLSKESMSGNKPANAV 1892
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 191 (72.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 823 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 882
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 883 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 925
Score = 52 (23.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 41/210 (19%), Positives = 83/210 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + E +K++ + +K+ + + K + +
Sbjct: 1380 KKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHIT 1439
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN- 591
E + D D+ E ++ M+ + K +++ L +Q + + N
Sbjct: 1440 AGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDKPDKGLNVQEQLEHTRNC 1496
Query: 592 --EYGHSV-ECLQAV--EQHNA--HENLENNASNSIHISAGQNHDKLINIITPV-SGEGR 643
+ G + ECL+A ++H NL S A + H KL + S E
Sbjct: 1497 LLKIGDRIAECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1555
Query: 644 LESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E + + G P R G D++ S
Sbjct: 1556 KEQKKKDDAIGGKKPFRPEASGSSRDSLMS 1585
Score = 45 (20.9 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1142 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1199
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQL--------ETKKR----TEAAVIRYHCNGKMQMDK- 528
K+ Q+ K I ++EE+ L E KK+ + ++ D
Sbjct: 1200 KISGVQVNVKSII--QHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDSR 1257
Query: 529 --LKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
L + E+ Y ++ ++ D +++L + + L V + KK KQ
Sbjct: 1258 LLLGIYEHGYGN-WELIKTDPELKLTDKKILPVETDKKPQGKQ 1299
Score = 41 (19.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 974 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1033
Query: 219 NLL 221
++
Sbjct: 1034 EII 1036
Score = 40 (19.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1022 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1066
Score = 40 (19.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 201 GESKVEGMDEERPHIFWTNLLEGKHPCWKYYSG--SSQGSRKRVQYFDDLQKKPELEIDE 258
GE K +G+ E+ P E K K S +G ++R + D +KKP+ +
Sbjct: 1366 GEVKDDGL-EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKGGDAK 1424
Query: 259 VAKKQRR 265
+ K +R
Sbjct: 1425 SSSKSKR 1431
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+K K + K+ E K++ +K+ +K + K+R ++
Sbjct: 1374 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKS 1410
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 198 (74.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 85/286 (29%), Positives = 128/286 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 829 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 888
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 889 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 948
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 949 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 1006
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
S L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1007 LSVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEEQ--RRRLEE-EERQK- 1060
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDS 297
E++E+ R NC Q S G E ++ SR G+ DS
Sbjct: 1061 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDS 1100
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 896 ESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQN 936
+ +N K E+ + ++ + P+H + P+P+ ++
Sbjct: 1366 DDDKLNDSKPESKDRSKKSVVSDAPVHITASGEPVPIAEES 1406
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 177 (67.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1086 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1145
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1146 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1183
Score = 59 (25.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 32/143 (22%), Positives = 63/143 (44%)
Query: 434 KDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKD 493
+D K + N+ L + E + +E+ A + + + + + + EEK +
Sbjct: 1554 EDGIKIEENS-LKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKVVVEPPEGEEKVE 1612
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLEN 553
+ E + +ET+ + A V + K +D ++ + EK KE E ++V L+N
Sbjct: 1613 KAEVKERTEEPMETEPKGAADVEKVE--EKSAIDLTPIVVEDKEEK-KEEEEKKEVMLQN 1669
Query: 554 LEALHVASMKKLSD-KQTSWVEQ 575
E + K L+D KQ ++Q
Sbjct: 1670 GE-----TPKDLNDEKQKKNIKQ 1687
Score = 56 (24.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1756 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1812
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1813 TRFAEVECLAESHQHLSKESMAGNKPANAV 1842
Score = 42 (19.8 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 16/74 (21%), Positives = 29/74 (39%)
Query: 624 AGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERI 683
A + D+ + ++ P GE ++E ++E P+ G D E S L +
Sbjct: 1592 APASEDEKV-VVEPPEGEEKVEKAEVKERTEEPMETEPKG-AADVEKVEEKSAIDLTPIV 1649
Query: 684 -EDSNSGDNQENNE 696
ED +E +
Sbjct: 1650 VEDKEEKKEEEEKK 1663
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 177 (67.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1093 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1152
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1153 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1190
Score = 59 (25.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 32/143 (22%), Positives = 63/143 (44%)
Query: 434 KDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKD 493
+D K + N+ L + E + +E+ A + + + + + + EEK +
Sbjct: 1561 EDGIKIEENS-LKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKVVVEPPEGEEKVE 1619
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLEN 553
+ E + +ET+ + A V + K +D ++ + EK KE E ++V L+N
Sbjct: 1620 KAEVKERTEEPMETEPKGAADVEKVE--EKSAIDLTPIVVEDKEEK-KEEEEKKEVMLQN 1676
Query: 554 LEALHVASMKKLSD-KQTSWVEQ 575
E + K L+D KQ ++Q
Sbjct: 1677 GE-----TPKDLNDEKQKKNIKQ 1694
Score = 56 (24.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1763 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1819
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1820 TRFAEVECLAESHQHLSKESMAGNKPANAV 1849
Score = 42 (19.8 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 16/74 (21%), Positives = 29/74 (39%)
Query: 624 AGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERI 683
A + D+ + ++ P GE ++E ++E P+ G D E S L +
Sbjct: 1599 APASEDEKV-VVEPPEGEEKVEKAEVKERTEEPMETEPKG-AADVEKVEEKSAIDLTPIV 1656
Query: 684 -EDSNSGDNQENNE 696
ED +E +
Sbjct: 1657 VEDKEEKKEEEEKK 1670
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 182 (69.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1077 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1136
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1137 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1184
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1185 AGMFDQKSSSHERRAFLQAILEHEEENE 1212
Score = 52 (23.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 438 KYQSNARLSQSE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKD 493
KY+S L + ++ H + F + + + SI + + K ++++AK EE +D
Sbjct: 1444 KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE-----EESED 1498
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQM--DKLKVLENEYAEKFKELERDRD 548
EE++ + E++ ++ ++ N K + DK K + K K + D D
Sbjct: 1499 ESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFD 1555
Score = 39 (18.8 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E ++SN + +E+ E
Sbjct: 1485 SARQKIAKEEESEDESNEEEEEEDEE 1510
Score = 37 (18.1 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 469 IRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+R I+ ++M + +R K+ + ++++DK ++ + K+R
Sbjct: 1310 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRR 1352
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 181 (68.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 81/261 (31%), Positives = 114/261 (43%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF FVFLL TRA + L++ VI SD++P N
Sbjct: 389 SYERVDGSVRGEERHLAIKNFGQ-QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQN 447
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA--KQDKTPDGYAQNMRPMAKFQPL 146
DL+A R Q + +KV RL TVEE V A K T + +P
Sbjct: 448 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPA 507
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGEDNDTRKFNIIL-KVKQSQGTYSTSFPLFGESK 204
A L+++++ +L G D IL + K Q S + P E
Sbjct: 508 ADADL----QLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWV-SDALPA-AEGG 561
Query: 205 VEGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQR 264
+E + H++ L EGK Y S+ RK + +LQK + E A ++
Sbjct: 562 SRDQEEGKNHMY---LFEGKD----YSKEPSKEDRKSFEQLVNLQKT----LLEKASQEG 610
Query: 265 RVASNCVNQSSLKPGLEEGKT 285
R N S L PGL EG T
Sbjct: 611 RSLRN--KGSVLIPGLVEGST 629
Score = 47 (21.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQK 502
QKK Q+ AK R + +EEKK + E +K
Sbjct: 644 QKKRQEAAAK-RRRLIEEKKRQKEEAEHKK 672
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 177 (67.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 456 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 515
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 516 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 563
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDNDTR 178
A F+Q + + F + ++ E +++R
Sbjct: 564 AGMFDQKSSSHERRAFLQAILEHEEQDESR 593
Score = 52 (23.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 233 GSSQGSRKRVQYFDDLQKKPELE------IDEVAK--KQRRVASNCVNQSSLKPGLEEGK 284
G RK V Y D L +K L+ ++E+ + +Q++ + S P
Sbjct: 701 GRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTS 760
Query: 285 TVSRDKEGTS 294
T SRDK+ S
Sbjct: 761 TRSRDKDDES 770
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 180 (68.4 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 113/480 (23%), Positives = 192/480 (40%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
A F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR 1290
Query: 208 MDEE--RPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDL------QKKPELEI-DE 258
EE P + E + P W ++ R + ++ + + E++ D
Sbjct: 1291 RREEARNPKRKPRLMEEDELPSW-IIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDS 1349
Query: 259 VAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETS 318
+ +KQ A ++ + + K+ + K + SST ++ST + + S
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSST-----PTTSTRSRDKDDES 1404
Query: 319 REXXXXXXXXXXXXXPEMAKLCEVLKLREDV----KDTV-GKFLEYLMINHRVDREPPSM 373
++ P L + +K D KD+ G+ L + I +E P
Sbjct: 1405 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY 1464
Query: 374 LQAFEISLCWTAASLRKQKI-DHK-ESLELAKKHLHFSCKKG-----EADYVYSLLQCLK 426
+ + + K++I +HK SL +K + C+ E +Y L+
Sbjct: 1465 YELIRKPVDFKKI---KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ 1521
Query: 427 EVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHK 486
VF + + K S+ E +E + + SRS++ K +K+ A+ R K
Sbjct: 1522 SVFTSVRQKIEKEDD----SEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLK 1577
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 180 (68.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +FVFLL TRA I L++ V+I+ SDW+P N
Sbjct: 1077 YERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHN 1136
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1137 DIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKK 1174
Score = 55 (24.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + ++ PS N
Sbjct: 1783 EPFKGEINRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMTEDPSHPSMALN 1839
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1840 TRFSEVECLAESHQHLSKESMSGNKPANAV 1869
Score = 48 (22.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/89 (23%), Positives = 37/89 (41%)
Query: 741 HSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTS-MPDG 799
+ G K +E + S VP E S++++ E K++ P+ ++ + DG
Sbjct: 1561 NGDGEKEANENKNSEVIAVPDEDGRAASASEEKEK-----GKEEKEKTPESSSEAEKADG 1615
Query: 800 EVLLRVPEAASSSNCTENF--MDSPPGEE 826
+ + E A S + E D P G E
Sbjct: 1616 KQEEKEEENAKSGDSEEKTDDTDKPKGSE 1644
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 178 (67.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSD 83
F + +YER+DG + +++ + FN S RF FLL TRA I L++ VII+ SD
Sbjct: 562 FKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSD 621
Query: 84 WSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAK 125
W+P DL+A+ R+ Q ++ ++RL TVEE+++ + K
Sbjct: 622 WNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITK 663
Score = 52 (23.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 217 WTNLLEGKHPCWKYYSGSSQGSRKR----VQYF-DDLQKKPEL--EIDEVAKKQRRVASN 269
W +LL+ K+ + S+ G RKR V Y DDL E+ E DE +V S+
Sbjct: 781 WKDLLKDKYEVQQAEELSALGKRKRNGKQVMYAEDDLDGLEEISDEEDEYCLDDLKVTSD 840
Query: 270 CVNQSSLKPGLEEGK--TVSRDKEGTSVDSS 298
++ + K TV+R + D+S
Sbjct: 841 EEEEADEPEAARQRKPRTVTRPYRKRARDNS 871
Score = 49 (22.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/128 (19%), Positives = 58/128 (45%)
Query: 471 GIQKKCQKQM---AKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNG-KMQM 526
G Q CQ ++ K K+L +++ D+ K + E + R H + ++ +
Sbjct: 674 GKQHLCQDELDDIIKYGSKELFSEEN-DEAGRSGKIHYDDAA-IEQLLDRNHVDAVEVSL 731
Query: 527 D---KLKVLENEYAEKFKELERDRDVR-LENLEALHVASMKKLSDKQTSWVEQVKSWLQI 582
D + L+N F+ ++ + + LE +A+ S + +D+ + W + +K ++
Sbjct: 732 DDEEETDFLKNFKVASFEYVDDENEAAALEEAQAIENNSSVRNADRTSHWKDLLKDKYEV 791
Query: 583 QLSNKPSS 590
Q + + S+
Sbjct: 792 QQAEELSA 799
Score = 41 (19.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 432 SMKDVSKYQSNARLSQSEIVSHRQELFK---VAQKDFSRSIRGIQKKCQKQM--AKLRHK 486
++++ ++N+ + ++ SH ++L K Q+ S G +K+ KQ+ A+
Sbjct: 759 ALEEAQAIENNSSVRNADRTSHWKDLLKDKYEVQQAEELSALGKRKRNGKQVMYAEDDLD 818
Query: 487 QLEEKKDIDKRYEEQKAQLETKKRTEA 513
LEE D + Y ++ + + EA
Sbjct: 819 GLEEISDEEDEYCLDDLKVTSDEEEEA 845
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 488 LEEKKDIDKRYEEQKAQLETKKRTEAAVIR-YHCNGKMQMDKLKVLENE--YAEK--FKE 542
L+ D ++ +E +A + K RT V R Y + +++ ++E E Y F E
Sbjct: 835 LKVTSDEEEEADEPEAARQRKPRT---VTRPYRKRARDNSEEIPLMEGEGRYLMVLGFNE 891
Query: 543 LERD 546
ERD
Sbjct: 892 TERD 895
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 195 (73.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 84/286 (29%), Positives = 128/286 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 830 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 889
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q +Q+ ++RL + +VEE +L AK+ D Q M K
Sbjct: 890 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHT 949
Query: 148 QATFFEQTLLNDVVQEFSTILT---------QNGEDNDTRKFNI--ILKVKQSQ----GT 192
+ T N +E S IL GE+ + ++ +I ILK ++ G
Sbjct: 950 GSAPSSSTPFNK--EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGP 1007
Query: 193 YSTSFPLFGESKVEGMDE-ERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKK 251
+ L + KV + I K+ W+ Q R+R++ ++ QK
Sbjct: 1008 LTVGDELLSQFKVANFSNMDEDDIELEPERNSKN--WEEIIPEDQ--RRRLEE-EERQK- 1061
Query: 252 PELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDS 297
E++E+ R NC Q S G E ++ SR G+ DS
Sbjct: 1062 ---ELEEIYMLPRM--RNCAKQISFN-GSEGRRSRSRRYSGSDSDS 1101
Score = 38 (18.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 896 ESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPV 932
+ +N K+E+ + ++ + P+H + P+P+
Sbjct: 1367 DDDKLNESKSESKERSKKSSVSDAPVHITASGEPVPI 1403
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 177 (67.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1086 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1145
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1146 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1183
Score = 57 (25.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 490 EKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDV 549
EK ++ +R EE + E+K TE K +D ++ + EK KE E ++V
Sbjct: 1622 EKAEVKERAEEPM-ETESKGTTEVE----KAEEKSAVDLTPIVVEDKEEK-KEEEEKKEV 1675
Query: 550 RLENLEALHVASMKKLSD-KQTSWVEQ 575
L+N E + K LSD KQ ++Q
Sbjct: 1676 LLQNGE-----TPKDLSDEKQKKNLKQ 1697
Score = 56 (24.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1766 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1822
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1823 TRFAEVECLAESHQHLSKESMAGNKPANAV 1852
Score = 51 (23.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 38/160 (23%), Positives = 60/160 (37%)
Query: 795 SMPD-GEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVPKN-VNSS 852
SMP+ EV + S + S PG+ Q T A VP E +++ +N +
Sbjct: 1510 SMPELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPA--PVPPAEDGIKIEENSLKEE 1567
Query: 853 HGLENAISLNPLSKE------QIPDGATSCIPS---AEVLLKVPESSP-GEI-VESGNIN 901
E + P + E Q P A + P A K P P GE VE +
Sbjct: 1568 ESTEGEKEVKPTAPEVTVECAQPPAPAPAPAPGPAPAPEDDKAPAEPPEGEEKVEKAEVK 1627
Query: 902 GDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNIIEER 941
E T S+ E+S + P++ ++ E++
Sbjct: 1628 ERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKK 1667
Score = 39 (18.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 637 PVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNE 696
P GE ++E ++E P+ + G A ++++ +ED +E +
Sbjct: 1614 PPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEKK 1673
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 191 (72.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 837 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 896
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 897 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 939
Score = 50 (22.7 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 39/209 (18%), Positives = 82/209 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + E +K++ + K++ + + K + +
Sbjct: 1394 KKQKKKENKENKEKQMSSRKDKEGDKERKKSK-DKKEKPKGGDAKSSSKSKRSQGPVHIT 1452
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN- 591
E + D D+ E ++ M+ + K +++ L +Q + + N
Sbjct: 1453 AGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDKPDKGLNVQEQLEHTRNC 1509
Query: 592 --EYGHSV-ECLQAV--EQHNA--HENLENNASNSIHISAGQNHDKLINIITPVSGEGRL 644
+ G + ECL+A ++H NL S A + H KL + +
Sbjct: 1510 LLKIGDRIAECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1568
Query: 645 ESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E + + G P R G D++ S
Sbjct: 1569 EQKKKDDVIGGKKPFRPEASGSSRDSLIS 1597
Score = 45 (20.9 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1156 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1213
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQL--------ETKKR----TEAAVIRYHCNGKMQMDK- 528
K+ Q+ K I ++EE+ L E KK+ + ++ D
Sbjct: 1214 KISGVQVNVKSII--QHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDSR 1271
Query: 529 --LKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
L + E+ Y ++ ++ D +++L + + L V + KK KQ
Sbjct: 1272 LLLGIYEHGYGN-WELIKTDPELKLTDKKILPVETDKKPQGKQ 1313
Score = 41 (19.5 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 988 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1047
Query: 219 NLL 221
++
Sbjct: 1048 EII 1050
Score = 40 (19.1 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1036 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1080
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+K K + K+ E K++ +K+ +K + K+R ++
Sbjct: 1388 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKS 1424
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 191 (72.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 836 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 895
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 896 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 938
Score = 50 (22.7 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 39/209 (18%), Positives = 82/209 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + E +K++ + K++ + + K + +
Sbjct: 1393 KKQKKKENKENKEKQMSSRKDKEGDKERKKSK-DKKEKPKGGDAKSSSKSKRSQGPVHIT 1451
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN- 591
E + D D+ E ++ M+ + K +++ L +Q + + N
Sbjct: 1452 AGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDKPDKGLNVQEQLEHTRNC 1508
Query: 592 --EYGHSV-ECLQAV--EQHNA--HENLENNASNSIHISAGQNHDKLINIITPVSGEGRL 644
+ G + ECL+A ++H NL S A + H KL + +
Sbjct: 1509 LLKIGDRIAECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1567
Query: 645 ESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E + + G P R G D++ S
Sbjct: 1568 EQKKKDDAIGGKKPFRPEASGSSRDSLMS 1596
Score = 45 (20.9 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1155 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1212
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQL--------ETKKR----TEAAVIRYHCNGKMQMDK- 528
K+ Q+ K I ++EE+ L E KK+ + ++ D
Sbjct: 1213 KISGVQVNVKSII--QHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDSR 1270
Query: 529 --LKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
L + E+ Y ++ ++ D +++L + + L V + KK KQ
Sbjct: 1271 LLLGIYEHGYGN-WELIKTDPELKLTDKKILPVETDKKPQGKQ 1312
Score = 41 (19.5 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 987 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1046
Query: 219 NLL 221
++
Sbjct: 1047 EII 1049
Score = 40 (19.1 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1035 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1079
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+K K + K+ E K++ +K+ +K + K+R ++
Sbjct: 1387 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKS 1423
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 191 (72.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 847 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 906
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 907 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 949
Score = 50 (22.7 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 39/209 (18%), Positives = 82/209 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + E +K++ + K++ + + K + +
Sbjct: 1403 KKQKKKENKENKEKQMSSRKDKEGDKERKKSK-DKKEKPKGGDAKSSSKSKRSQGPVHIT 1461
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN- 591
E + D D+ E ++ M+ + K +++ L +Q + + N
Sbjct: 1462 AGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDKPDKGLNVQEQLEHTRNC 1518
Query: 592 --EYGHSV-ECLQAV--EQHNA--HENLENNASNSIHISAGQNHDKLINIITPVSGEGRL 644
+ G + ECL+A ++H NL S A + H KL + +
Sbjct: 1519 LLKIGDRIAECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1577
Query: 645 ESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E + + G P R G D++ S
Sbjct: 1578 EQKKKDDVIGGKKPFRPEASGSSRDSLIS 1606
Score = 43 (20.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1166 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1223
Query: 482 KLRHKQLEEKKDIDKRYEEQ 501
K+ Q+ K I ++EE+
Sbjct: 1224 KISGVQVNVKSII--QHEEE 1241
Score = 41 (19.5 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 998 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1057
Query: 219 NLL 221
++
Sbjct: 1058 EII 1060
Score = 40 (19.1 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1046 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1090
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+K K + K+ E K++ +K+ +K + K+R ++
Sbjct: 1397 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKS 1433
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 177 (67.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1114 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1173
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1174 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1211
Score = 57 (25.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 490 EKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDV 549
EK ++ +R EE + E+K TE K +D ++ + EK KE E ++V
Sbjct: 1656 EKAEVKERAEEPM-ETESKGTTEVE----KAEEKSAVDLTPIVVEDKEEK-KEEEEKKEV 1709
Query: 550 RLENLEALHVASMKKLSD-KQTSWVEQ 575
L+N E + K LSD KQ ++Q
Sbjct: 1710 LLQNGE-----TPKDLSDEKQKKNLKQ 1731
Score = 56 (24.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1800 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1856
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1857 TRFAEVECLAESHQHLSKESMAGNKPANAV 1886
Score = 39 (18.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 885 KVPESSP-GEI-VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNIIEER 941
K P P GE VE + E T S+ E+S + P++ ++ E++
Sbjct: 1643 KAPAEPPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKK 1701
Score = 39 (18.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 637 PVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNE 696
P GE ++E ++E P+ + G A ++++ +ED +E +
Sbjct: 1648 PPEGEEKVEKAEVKERAEEPMETESKGTTEVEKAEEKSAVDLTPIVVEDKEEKKEEEEKK 1707
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 185 (70.2 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 62/185 (33%), Positives = 93/185 (50%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG V SK+K A+ +FN GS F FLL TRA I L + VIIF SDW+P
Sbjct: 717 FQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQA 776
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A+ R Q + V+R S TVEE++L A++ + YA + + P +
Sbjct: 777 DLQAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLE-YA--IISLGITDPSAK 833
Query: 149 ATFFEQTLLNDVVQ--EFSTILTQNGEDNDTRKF-NIILKVKQSQGTYSTSFPLFGESKV 205
+ N++ Q +F T E+N+ +K N+ L S + P GES +
Sbjct: 834 NGSKTEPSTNELSQILKFGAG-TMFKENNNQQKLENLNLDDVLSHAEDHVTTPELGESNL 892
Query: 206 EGMDE 210
G +E
Sbjct: 893 -GSEE 896
Score = 52 (23.4 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 26/104 (25%), Positives = 47/104 (45%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEY 536
Q+++ KL+ EEK+ D++Y + Q+ R +AAV ++ + D +E+
Sbjct: 918 QEELTKLKD---EEKRKADEQYLQD--QIAMYSRRKAAVRKFENGSSVPSD----VEDS- 967
Query: 537 AEKFKELERDR--DVRLENLEALHV-ASMKKLSDKQTSWVEQVK 577
E + L R D +L E + S+ K D W + V+
Sbjct: 968 GEDSRPLRRRNAGDHQLSEKEIRGIYRSILKWGDLSGKWEQLVE 1011
Score = 41 (19.5 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 845 VPKNVNSSHGLENAISLN 862
VP N SS+G N +S N
Sbjct: 1242 VPHNSGSSNGSHNTLSGN 1259
Score = 37 (18.1 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 921 LHERSLTNPLPVLTQNIIEE 940
+ E S+TN PVL ++ E
Sbjct: 1010 VEEGSITNKNPVLVKHAYNE 1029
Score = 37 (18.1 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 893 EIVESGNINGDKNEAFATTSENFNHNLPLHERSL 926
EIV + ++ E T +++ N LP H +S+
Sbjct: 1098 EIVLNRPVDMKLLEKIVTKTDSTNFVLPRHPKSV 1131
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 167 (63.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 39/101 (38%), Positives = 58/101 (57%)
Query: 26 GSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
G+ Y R+DG+ ++ A L FN S F+F+L TRA + L + VIIF SDW
Sbjct: 722 GTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDW 781
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAK 125
+P D++A R Q +++VFRL + +VEEK+L A+
Sbjct: 782 NPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAAR 822
Score = 63 (27.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
++E K +KD + +K+ K K +HK ++ K+ K+ E + + E + R EA
Sbjct: 1230 KKEPHKEKEKDKEK-----EKEEDKGKEKEKHKDKDKDKEHKKKSREDETEEERRARKEA 1284
Query: 514 AVIRYHCNGKMQMDKLKVLENEYAEKFKELERDR 547
R + Q D K L+ + A K + E+ R
Sbjct: 1285 K--RLKRQKEEQEDDAK-LQEKLARKAAKKEQKR 1315
Score = 60 (26.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 56/255 (21%), Positives = 101/255 (39%)
Query: 247 DLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCAS 306
DL++K E I+++ K S + + +P +E RDK G + S H +
Sbjct: 1082 DLKRKIEAPIEKIRIKFSGEPSEKYRKINEEPPKKE----HRDK-GRKEEKSHKHRSDDD 1136
Query: 307 SSTLVNNFPETSREXXXXXXXXXXXXXPEMAKLCE-----VLKLREDVKDTVGKFLEYLM 361
S+ S E KL E V K + +K +G+ +
Sbjct: 1137 DSSPKKKKHRDSDESSEKKKKKHKHDSDSALKLREGSPLSVDKEKSPMKIRIGQGQPSIS 1196
Query: 362 INHRVDRE-PPSMLQA---FEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKGEADY 417
+ D+ PP L+ F + T S + +K HKE + +K KG+
Sbjct: 1197 LAANEDKNHPPIKLKLNVKFNMPSQETDGSKKDKKEPHKEKEKDKEKEKEED--KGKEKE 1254
Query: 418 VYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQ 477
+ KE + S +D ++ + AR + ++E Q+D ++ +Q+K
Sbjct: 1255 KHKDKDKDKEHKKKSREDETEEERRARKEAKRLKRQKEE-----QEDDAK----LQEKLA 1305
Query: 478 KQMAKLRHKQLEEKK 492
++ AK K+LE++K
Sbjct: 1306 RKAAKKEQKRLEKEK 1320
Score = 44 (20.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 435 DVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDI 494
D K + N S S+ S ++E K ++D + +K+ +K+ K + K + +KD+
Sbjct: 1030 DEKKRKHNRSESDSDDNSLKKEK-KHRKEDHPK-----EKEKEKKKEKEQEKSTDSEKDL 1083
Query: 495 DKRYEEQKAQLETK 508
++ E ++ K
Sbjct: 1084 KRKIEAPIEKIRIK 1097
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 178 (67.7 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG++ +++ A+ +N G+ +FVFLL TRA I L++ VII+ SDW+P N
Sbjct: 983 YERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1042
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
D++A R Q ++ ++R + +VEE++ +AK+ AK +
Sbjct: 1043 DIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMS 1102
Query: 149 ATFFEQTL---LNDVV-QEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESK 204
T + L ++ +E + + +GE ++K N + + + F L +
Sbjct: 1103 KTELDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPN---EQEIVWDDAAVDFLLDRNKE 1159
Query: 205 VEGMD-EERPHIFWTN 219
EG D E++ H WTN
Sbjct: 1160 EEGQDGEKKEH--WTN 1173
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 178 (67.7 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG++ +++ A+ +N G+ +FVFLL TRA I L++ VII+ SDW+P N
Sbjct: 983 YERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1042
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
D++A R Q ++ ++R + +VEE++ +AK+ AK +
Sbjct: 1043 DIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMS 1102
Query: 149 ATFFEQTL---LNDVV-QEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESK 204
T + L ++ +E + + +GE ++K N + + + F L +
Sbjct: 1103 KTELDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPN---EQEIVWDDAAVDFLLDRNKE 1159
Query: 205 VEGMD-EERPHIFWTN 219
EG D E++ H WTN
Sbjct: 1160 EEGQDGEKKEH--WTN 1173
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 177 (67.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1093 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1152
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1153 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1190
Score = 56 (24.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1763 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1819
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1820 TRFAEVECLAESHQHLSKESMAGNKPANAV 1849
Score = 53 (23.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 490 EKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDV 549
EK ++ +R EE +ET + A V + K D + ++ + EK KE E ++V
Sbjct: 1619 EKAEVKERTEEP---METDPKGVADVEK--AEEKAAGDLIPIVVEDKEEK-KEEEEKKEV 1672
Query: 550 RLENLEALHVASMKKLSD-KQTSWVEQ 575
L+N E + K L+D KQ ++Q
Sbjct: 1673 MLQNGE-----TPKDLNDEKQKKNIKQ 1694
Score = 49 (22.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 634 IITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAG--LKERIEDSNSGDN 691
+I P GE ++E ++E P+ + G + + AE AG + +ED
Sbjct: 1608 LIEPPEGEEKVEKAEVKERTEEPMETDPKG--VADVEKAEEKAAGDLIPIVVEDKEEKKE 1665
Query: 692 QENNE 696
+E +
Sbjct: 1666 EEEKK 1670
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 177 (67.4 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG++ ++A++ F + G+ RFVFLL TRA I L++ VI+F SDW+P
Sbjct: 1252 TYERLDGSIKSEVRQASIDRFQDKGANRFVFLLSTRAGGVGINLTTADTVILFDSDWNPQ 1311
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEE 118
+DL+A R Q +KV+RL + T EE
Sbjct: 1312 SDLQAQARCHRIGQTNNVKVYRLITRNTYEE 1342
Score = 69 (29.3 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 49/232 (21%), Positives = 93/232 (40%)
Query: 440 QSNARLSQSEIVSHRQEL-FKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRY 498
Q R + E S+ +E KV +K+ S + +K + + K EK+ +
Sbjct: 1858 QLTIRWNIEEPKSNDKETQIKVEEKEKSTESKSSSND-EKDVCEKVEKG--EKEISSDKV 1914
Query: 499 EEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYA---EKFKELERDRDVRLENLE 555
+E K ++E ++ V + + D K +NE + EK K+ E+ +D +
Sbjct: 1915 DENKEKVENNEKVN--VDEKSKDNEKSNDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDD 1972
Query: 556 ALHVASMKKLSDKQTSWVE-QVKSW-LQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLE 613
K D+++ E Q +S +++ +K +S+ S+E + E ++ +
Sbjct: 1973 EKSKDDEKSKDDEKSKLEENQDESTPMEVDKESKSTSSSEKQSIEIKEEKESEKKPQDND 2032
Query: 614 NNASNSIHISAGQNHD-KLIN--IITPVSGEGRLESPVIQE-TVAGPLRLNN 661
N N + + N D KL + T + +P T PL L N
Sbjct: 2033 NATENGVKSPSTTNTDSKLTSPSTATTTTTTTTTTTPTTTTATTVKPLSLKN 2084
Score = 54 (24.1 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 63/309 (20%), Positives = 124/309 (40%)
Query: 253 ELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVD-SSTIHWTCASSST-- 309
EL V K + S V++S L+ GL++ ++ +D + +D +ST ++ +T
Sbjct: 1753 ELATQSVLKSPGEIQS--VSESFLEVGLKQQGSIIKDFYDSLLDDTSTYNFHKMGFNTEN 1810
Query: 310 -LVNNFPETSREXXXXXXXXXXXXXPEMAKLCEVLKLREDVKDTVGKFL-EYLMINHRVD 367
++ N P K V + + G F + L I ++
Sbjct: 1811 KIILNDASKLNAAAASASSSSDKPTPPPIKRFHVKR----TFNANGLFCAQQLTIRWNIE 1866
Query: 368 REPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQCLKE 427
EP S + +I + K+K +S +K + +KGE + + KE
Sbjct: 1867 -EPKSNDKETQIKV------EEKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKE 1919
Query: 428 VFELSMK-DVS-KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRH 485
E + K +V K + N + + SE ++ KD +S K +K +
Sbjct: 1920 KVENNEKVNVDEKSKDNEKSNDSEKSKDNEK-----SKDDEKS-----KDDEKSKDDEKS 1969
Query: 486 KQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKV-LENEYAEKFKELE 544
+ E+ KD +K +++K++LE + + E+ + K K +E + ++ ++
Sbjct: 1970 QDDEKSKDDEKSKDDEKSKLE-ENQDESTPMEVDKESKSTSSSEKQSIEIKEEKESEKKP 2028
Query: 545 RDRDVRLEN 553
+D D EN
Sbjct: 2029 QDNDNATEN 2037
Score = 50 (22.7 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 36/182 (19%), Positives = 71/182 (39%)
Query: 516 IRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQ 575
IR++ DK ++ E EK E + + + E + + SDK E+
Sbjct: 1861 IRWNIEEPKSNDKETQIKVEEKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKEK 1920
Query: 576 VKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINII 635
V++ ++ + K NE + E + E+ E +++ S Q+ +K +
Sbjct: 1921 VENNEKVNVDEKSKDNEKSNDSEKSKDNEKSKDDEKSKDD-EKSKDDEKSQDDEKSKDDE 1979
Query: 636 TPVSGE-GRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQEN 694
E +LE + T P+ ++ + T +S + SI +E+ + DN
Sbjct: 1980 KSKDDEKSKLEENQDEST---PMEVDK--ESKSTSSSEKQSIEIKEEKESEKKPQDNDNA 2034
Query: 695 NE 696
E
Sbjct: 2035 TE 2036
Score = 48 (22.0 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 898 GNINGDKNEAFATTSENFNHNLPLHERSL 926
GN N + N F + N N+ LP +R +
Sbjct: 2493 GNNNSNNNNPFFGNNNNNNNKLPSLDRMI 2521
Score = 48 (22.0 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 19/87 (21%), Positives = 39/87 (44%)
Query: 786 DQIPDGATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRV 845
+Q P+G P + + + ++++N N ++ G I + +IS P + P +
Sbjct: 2875 EQTPEGIYMK-PHASITV-INHGSNNNNNNNNINNNMMGSG-IGSPSISTSPQQRQP-NL 2930
Query: 846 PKNVNSSHGLENAISLNPLS--KEQIP 870
P + + + PLS ++QIP
Sbjct: 2931 PLSPSHHQQSQQHHQQQPLSPQRQQIP 2957
Score = 48 (22.0 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 31/187 (16%), Positives = 83/187 (44%)
Query: 446 SQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDI--DKRYEEQ-K 502
+Q+ + +Q+ + + S S+R +K Q+ K H + K+ + K ++ Q +
Sbjct: 2292 NQNSSTNQQQQQQQSEKIPSSESLRRRIQKVTDQILKKEHSDMIMKQHMAQQKLHQLQLQ 2351
Query: 503 AQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASM 562
Q++ +K E + N + Q + + ++ ++ + ++ + S
Sbjct: 2352 QQMKEQKEKEFQQQQNQPNQQNQPGQQNQ-QTQHGHSGSHKQKYSNDYFDDFVSRSDFSG 2410
Query: 563 KKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHI 622
+SD + + +KS +++ S+ S+N ++ +N + N NN++++
Sbjct: 2411 GDISDVEID--DYIKS-KKMKHSHNSSNNNSNNNNNSNSNNNNNNNNSNNNNNSTSNSGY 2467
Query: 623 SAGQNHD 629
++G N++
Sbjct: 2468 NSGNNNN 2474
Score = 48 (22.0 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 440 QSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYE 499
Q N LS S H+Q Q+ S + I K Q++ + H+Q ++++ + +
Sbjct: 2927 QPNLPLSPSH---HQQSQQHHQQQPLSPQRQQIPKSTQQKSHQQHHQQQQQQQQQNHHHH 2983
Query: 500 EQKAQ 504
Q Q
Sbjct: 2984 HQSPQ 2988
Score = 44 (20.5 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSS 298
DD + K + + + K + S +S L+ +E + DKE S SS
Sbjct: 1959 DDEKSKDDEKSQDDEKSKDDEKSKDDEKSKLEENQDESTPMEVDKESKSTSSS 2011
Score = 42 (19.8 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 685 DSNSGDNQENNEPLNPCSREQ 705
DS+SG+N N N ++Q
Sbjct: 2284 DSDSGNNNNQNSSTNQQQQQQ 2304
Score = 41 (19.5 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 668 TIASAEASIAGLKERIEDSNSGDNQENNEP 697
T +S+ + A ++ + GD N+ P
Sbjct: 1376 TTSSSSTTTASSSSNVDSPSPGDTPSNSNP 1405
Score = 40 (19.1 bits), Expect = 5.3e-09, Sum P(4) = 5.3e-09
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 661 NGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLN 699
+GGD D +K SN+ N NN N
Sbjct: 2409 SGGDISDVEIDDYIKSKKMKHSHNSSNNNSNNNNNSNSN 2447
Score = 39 (18.8 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 585 SNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINII 635
S SSN+ + +N + N NN +N+ + + N++ NI+
Sbjct: 2538 SKSQSSNQSSKPFSNSSSSSSNN-NNNYNNNINNNNNNNNNNNNNTNSNIL 2587
Score = 37 (18.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 878 PSAEVLLKVPESSPGEIVESGNINGDKNEAFATTSENFNH 917
P ++L V P + N D+N + N N+
Sbjct: 2240 PELDLLSNVKRGQPNTFSPNPTSNNDQNNNNNNNNSNQNN 2279
Score = 37 (18.1 bits), Expect = 7.3e-07, Sum P(5) = 7.3e-07
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 604 EQHNAHENLENNASNSIHISA--GQNHDK 630
+Q+N + N +N +N+ +I + G N+++
Sbjct: 2265 DQNNNNNNNNSNQNNTDNIDSDSGNNNNQ 2293
Score = 37 (18.1 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 598 ECLQAVEQHNAHENLENNASNSI 620
E +Q+ +QH+ +N + SN+I
Sbjct: 1602 EVIQS-QQHHHSDNKKKKQSNNI 1623
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 166 (63.5 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 37/93 (39%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y + G L KK A++ FN S +F+F+L TRA I L+S VI++ SDW+P
Sbjct: 321 YRSISGQYLFVYKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 380
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 381 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 413
Score = 63 (27.2 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 786 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 842
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 843 KDVKKVK 849
Score = 41 (19.5 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 619 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 676
Query: 211 ERPHIFW 217
E +FW
Sbjct: 677 EYSAVFW 683
Score = 40 (19.1 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 785 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 843
Score = 39 (18.8 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 782 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 829
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 141 (54.7 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 40/161 (24%), Positives = 73/161 (45%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ K++ + FN F+F+L TR+ + L+ VI + +DW+P
Sbjct: 1421 TYLRLDGSTKIDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSM 1480
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAK--FQPL 146
D +A R Q ++ ++R + T+EE +L + Q + D F+ L
Sbjct: 1481 DAQAQDRCHRIGQTREVNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNL 1540
Query: 147 VQATFFEQTLLNDVV--QEFSTILTQNGEDNDTRKFNIILK 185
+T + D V QE+ + Q +++D + LK
Sbjct: 1541 NLSTKSSIDTIKDNVTQQEWENAVEQAEDESDVLAYKNALK 1581
Score = 86 (35.3 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 35/187 (18%), Positives = 90/187 (48%)
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+Q+L + Q+ + + Q++ Q+Q + + +Q +++K ++ ++Q+ Q + +++ +
Sbjct: 1666 KQQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQKQQQQQQQQQQQQQQQQQQP 1725
Query: 514 AVIRYHCNGKMQM---DKLKVLENEYA-EKFKELERDRDVRLENLEALHVASMKKL--SD 567
+++ K + +K K ENE E E E+D + E E + ++K ++
Sbjct: 1726 KILKLDEKDKENLKENEKEKENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNE 1785
Query: 568 KQTSWV-EQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQ 626
K+ E+ K + + +K + ++ + + N E+ +NN +N+ + +
Sbjct: 1786 KENEKENEKEKENERDKDKDKDQDQDKDQEMKIINEIPPKN-DEDEDNNINNNNNNNNNN 1844
Query: 627 NHDKLIN 633
N++ L N
Sbjct: 1845 NNNNLSN 1851
Score = 84 (34.6 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 46/226 (20%), Positives = 98/226 (43%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
Q++ Q+Q + + +Q ++++ ++ ++Q+ Q + K++ + + + Q K+ L
Sbjct: 1671 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQKQQQQQQQQQQQQQQQQQQPKILKL 1730
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNE 592
+ + E KE E++++ EN E + +K ++K+ E+ ++ ++I+ K NE
Sbjct: 1731 DEKDKENLKENEKEKENENEN-ENENENEKEKDNEKEREKQEK-ENEIEIE---KEKGNE 1785
Query: 593 YGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHD---KLINIITPVSGEGRLESPVI 649
+ E+ N E EN Q+ D K+IN I P + E E I
Sbjct: 1786 KEN--------EKENEKEK-ENERDKDKDKDQDQDKDQEMKIINEIPPKNDED--EDNNI 1834
Query: 650 QETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENN 695
NN + L + + + ++N+ +N NN
Sbjct: 1835 NNNNNN--NNNNNNNNLSNNGNGDNNNNNNNNNNNNNNNNNNNNNN 1878
Score = 76 (31.8 bits), Expect = 8.0e-07, Sum P(4) = 8.0e-07
Identities = 41/225 (18%), Positives = 96/225 (42%)
Query: 408 FSCKKGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSR 467
F+ K E+ ++L + V + +K + Q + Q + +Q+ + Q+ +
Sbjct: 1645 FALKLTESISSFTL-ESYGTVTKQQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1703
Query: 468 SIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMD 527
+ Q++ Q+Q + + +Q + +D++ +E + E +K E + N K + D
Sbjct: 1704 KQKQQQQQQQQQQQQQQQQQQPKILKLDEKDKENLKENEKEKENENENENENENEK-EKD 1762
Query: 528 KLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNK 587
K E + E E+E+++ EN E + + DK + ++++ N+
Sbjct: 1763 NEKEREKQEKENEIEIEKEKGNEKEN-EKENEKEKENERDKDKDKDQDQDKDQEMKIINE 1821
Query: 588 -PSSNEYG--HSVECLQAVEQHNAHENLENNASNSIHISAGQNHD 629
P N+ +++ +N + NL NN + + + N++
Sbjct: 1822 IPPKNDEDEDNNINNNNNNNNNNNNNNLSNNGNGDNNNNNNNNNN 1866
Score = 68 (29.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 37/261 (14%), Positives = 109/261 (41%)
Query: 440 QSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYE 499
Q +L+Q + + +Q+ QK + I ++ Q+Q + + +Q ++++ ++ +
Sbjct: 2674 QQLQQLAQQQQLQQQQQQ---QQKPPPPPLPQILQQQQQQQQQQQQQQQQQQQQQQQQQQ 2730
Query: 500 EQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHV 559
+Q+ Q++ ++ + ++ ++Q +L+ + Y ++ + + + ++ +
Sbjct: 2731 QQQQQMQQLQQQQLQQLQLQ---QLQQQQLQQQQQLYNMNRNNGQQQQPQQQQPIQGT-I 2786
Query: 560 ASMKKLSDKQTSWVEQVKSWLQIQ-LSNKPSSNEYGHSVECLQAVEQHNAHENLENNASN 618
K S S + QV+ Q + N + G ++ + + + N NN N
Sbjct: 2787 PVGKTGSTTVISSIPQVQQPYQNPVIINTTGNGNNGINISIPNSNQPMAINNNTNNN--N 2844
Query: 619 SIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAG 678
+++ + N+ IN+ + + + + +NN + ++ + +
Sbjct: 2845 NLNNNNNNNNTNTINMPMNIQPPSIIGMNINNNNINNNNNINNNNNNINNNNNINNNNNN 2904
Query: 679 LKERIEDSNSGDNQENNEPLN 699
++N+ +N NN +N
Sbjct: 2905 NNNNNNNNNNNNNNNNNNNIN 2925
Score = 62 (26.9 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 835 AVPNEEAPLRVPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEI 894
++PN P+ + N N+++ L N + N + +P + P + + + + ++ I
Sbjct: 2826 SIPNSNQPMAINNNTNNNNNLNNNNNNNNTNTINMP---MNIQPPSIIGMNINNNN---I 2879
Query: 895 VESGNINGDKNEAFATTSENFNHN 918
+ NIN + N + N N+N
Sbjct: 2880 NNNNNINNNNNNI--NNNNNINNN 2901
Score = 59 (25.8 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 585 SNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLI----NIITPVSG 640
+N ++N YG S+ + +N + N NN N+++I QN KLI N ++
Sbjct: 1872 NNNNNNNNYGGSLT--NQYDNNNLNNN--NNNKNNMYIKNFQN--KLISPDHNFRKNINS 1925
Query: 641 EGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQE 693
+++S ++ + +N+ + A EA G + +D N G++ E
Sbjct: 1926 TSKIKSEFKEDNII----VNDNDYNEEDGADDEADDDG-DDEADDENEGNDFE 1973
Score = 51 (23.0 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 822 PPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENAISLN-PLSKE 867
P G+ TV IS++P + P + P +N++ N I+++ P S +
Sbjct: 2787 PVGKTGSTTV-ISSIPQVQQPYQNPVIINTTGNGNNGINISIPNSNQ 2832
Score = 51 (23.0 bits), Expect = 0.00020, Sum P(4) = 0.00020
Identities = 33/175 (18%), Positives = 82/175 (46%)
Query: 436 VSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDID 495
VS +QS+A L S V+ ++A +R IR +KK Q A+L+ +Q +
Sbjct: 2469 VSLHQSHAPLQISTPVT-AITASEMALMTTNRFIR--EKKNQMLQAQLQAQQRAQMSQQQ 2525
Query: 496 KRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVR----L 551
++ ++Q+ Q + +++ + + + Q + + + + ++ ++L++ + ++ L
Sbjct: 2526 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQPQQPQQLQQPQQLQQPQQL 2585
Query: 552 ENLEALHVASMKKLSDK-QTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQ 605
+ + L +++ + Q+ ++Q QIQ +P + + LQ +Q
Sbjct: 2586 QQPQQLQPQQLQQPPQQPQSQQLQQPPQ--QIQQLQQPQAQIQQQLPQQLQPQQQ 2638
Score = 48 (22.0 bits), Expect = 0.00030, Sum P(5) = 0.00030
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 589 SSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINIITP----VSGEGR- 643
SS + G + E +N + ++S+S S+G+ D+ ++ V G G
Sbjct: 2275 SSQDEGSTNESGSTTNNNNINNPTSTSSSSS---SSGRKRDRKKQRLSKSNGGVGGGGSD 2331
Query: 644 LESPVIQETVAG 655
LESP+ +++G
Sbjct: 2332 LESPISSSSISG 2343
Score = 45 (20.9 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 897 SGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQN--IIEERPVP 944
+ N N + N + N N+N P ++T P L N + P P
Sbjct: 2906 NNNNNNNNNNNNNNNNNNINNNNPSTPTNITPPPQPLNANNTVTTVTPTP 2955
Score = 45 (20.9 bits), Expect = 0.00030, Sum P(5) = 0.00030
Identities = 17/71 (23%), Positives = 40/71 (56%)
Query: 439 YQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRY 498
+++ A+ S S++ R ++ K + + S + ++K +K+ KL K +EK I+K
Sbjct: 2073 FEAFAKPSLSKL--KRGKIQKQVAQQYVYSKQHTKEK-EKER-KLLMKMKKEKDKIEKAK 2128
Query: 499 EEQKAQLETKK 509
+E++ + + K+
Sbjct: 2129 QEEERRAKEKR 2139
Score = 40 (19.1 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 897 SGNINGDKNEAFATTSENFNHN 918
S N NGD N + N N+N
Sbjct: 1850 SNNGNGDNNNNNNNNNNNNNNN 1871
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 897 SGNINGDKNEAFATTSENFNHNLP 920
S G NE+ +TT+ N N N P
Sbjct: 2275 SSQDEGSTNESGSTTNNN-NINNP 2297
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 606 HNAHENLENNASNSIHISAGQNHDKLINIITP 637
+N + N NN +N+ + + N+ ITP
Sbjct: 2906 NNNNNNNNNNNNNNNNNNINNNNPSTPTNITP 2937
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 169 (64.5 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ A++ FN S RF+F+L TRA I L+S VI++ SDW+P
Sbjct: 532 YCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 591
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 592 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 624
Score = 63 (27.2 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 997 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 1053
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 1054 KDVKKVK 1060
Score = 41 (19.5 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 830 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 887
Query: 211 ERPHIFW 217
E +FW
Sbjct: 888 EYSAVFW 894
Score = 40 (19.1 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 996 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 1054
Score = 39 (18.8 bits), Expect = 9.5e-07, Sum P(3) = 9.5e-07
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 993 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 1040
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 191 (72.3 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 803 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 862
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 863 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 905
Score = 47 (21.6 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 24/134 (17%), Positives = 58/134 (43%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + E +K++ + +K+ + + K + +
Sbjct: 1360 KKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHIT 1419
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN- 591
E + D D+ E ++ M+ + K +++ L +Q + + N
Sbjct: 1420 AGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDKPDKGLNVQEQLEHTRNC 1476
Query: 592 --EYGHSV-ECLQA 602
+ G + ECL+A
Sbjct: 1477 LLKIGDRIAECLKA 1490
Score = 45 (20.9 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1122 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1179
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQL--------ETKKR----TEAAVIRYHCNGKMQMDK- 528
K+ Q+ K I ++EE+ L E KK+ + ++ D
Sbjct: 1180 KISGVQVNVKSII--QHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDSR 1237
Query: 529 --LKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
L + E+ Y ++ ++ D +++L + + L V + KK KQ
Sbjct: 1238 LLLGIYEHGYGN-WELIKTDPELKLTDKKILPVETDKKPQGKQ 1279
Score = 41 (19.5 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 954 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1013
Query: 219 NLL 221
++
Sbjct: 1014 EII 1016
Score = 40 (19.1 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1002 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1046
Score = 40 (19.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+K K + K+ E K++ +K+ +K + K+R ++
Sbjct: 1354 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKS 1390
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 201 GESKVEGMDEERPHIFWTNLLEGKHPCWKYYSG--SSQGSRKRVQYFDDLQKKPELEIDE 258
GE K +G+ E+ P E K K S +G ++R + D +KKP+ +
Sbjct: 1346 GEVKDDGL-EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKKPKGGDAK 1404
Query: 259 VAKKQRR 265
+ K +R
Sbjct: 1405 SSSKSKR 1411
Score = 39 (18.8 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 447 QSEIVSHRQELFKVAQK--DF-SRSIRGIQKKCQKQMAKLRHKQLEEKKD 493
Q I R+ L+ K +F +R + + K K+ ++ Q ++KKD
Sbjct: 1494 QEHIKLWRRNLWIFVSKFTEFDARKLHKLYKMAHKKRSQEEESQEQKKKD 1543
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 191 (72.3 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 834 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 893
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 894 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 936
Score = 48 (22.0 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 39/209 (18%), Positives = 82/209 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + KQ+ +KD + E +K++ + K++ ++ + K + +
Sbjct: 1390 KKQKKKENKENKEKQMSSRKDKEGDKERKKSK-DKKEKPKSGDAKSSSKSKRSQGPVHIT 1448
Query: 533 ENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSN- 591
E + D D+ E ++ M+ + K +++ L +Q + + N
Sbjct: 1449 AGSEPVPIGE-DEDDDLDQETF-SICKERMRPVK-KALKQLDKPDKGLNVQEQLEHTRNC 1505
Query: 592 --EYGHSV-ECLQAV--EQHNA--HENLENNASNSIHISAGQNHDKLINIITPVSGEGRL 644
+ G + ECL+A ++H NL S A + H KL + +
Sbjct: 1506 LLKIGDRIAECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1564
Query: 645 ESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E + G P R G D++ S
Sbjct: 1565 EQKKKDDVTGGKKPFRPEASGSSRDSLIS 1593
Score = 41 (19.5 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 985 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1044
Query: 219 NLL 221
++
Sbjct: 1045 EII 1047
Score = 40 (19.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1033 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1077
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
+K K + K+ E K++ +K+ +K + K+R ++
Sbjct: 1384 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKS 1420
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G K+ +
Sbjct: 1153 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKR-RGPTI 1210
Query: 482 KLRHKQLEEKKDIDKRYEEQ 501
K+ Q+ K I ++EE+
Sbjct: 1211 KISGVQVNVKSII--QHEEE 1228
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 177 (67.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 36/98 (36%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1115 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1174
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1175 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1212
Score = 56 (24.8 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS-----N 591
E FK E+ R + ++N +A KL ++ EQ++ + +S PS N
Sbjct: 1785 EPFKGEMNRGNFLEIKNK---FLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALN 1841
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E++ N +N++
Sbjct: 1842 TRFAEVECLAESHQHLSKESMAGNKPANAV 1871
Score = 55 (24.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 490 EKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDV 549
EK ++ +R EE +ET + A V + K +D ++ + EK KE E ++V
Sbjct: 1641 EKAEVKERTEEA---METDPKGNADVEKVE--EKAAVDLTPIVVEDKEEK-KEEEEKKEV 1694
Query: 550 RLENLEALHVASMKKLSD-KQTSWVEQ 575
L+N E + K L+D KQ ++Q
Sbjct: 1695 MLQNGE-----TPKDLNDEKQKKNIKQ 1716
Score = 47 (21.6 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 12/70 (17%), Positives = 32/70 (45%)
Query: 440 QSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYE 499
+ ++ ++E+ +E + K + + +++K + + + EEKK+ +++ E
Sbjct: 1635 EGEEKVEKAEVKERTEEAMETDPKG-NADVEKVEEKAAVDLTPIVVEDKEEKKEEEEKKE 1693
Query: 500 EQKAQLETKK 509
ET K
Sbjct: 1694 VMLQNGETPK 1703
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 180 (68.4 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 36/98 (36%), Positives = 62/98 (63%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG+++ ++ A+ +N G+ +F+FLL TRA I L++ VII+ SDW+P N
Sbjct: 969 YERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1028
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEEK+ +AK+
Sbjct: 1029 DIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKK 1066
Score = 57 (25.1 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 462 QKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKK-RTEAAVIRYH- 519
++D + ++ G + ++ ++E D D+ E ++ +ET+K R +++
Sbjct: 1441 KEDATETVNGATSEPATDAESEQNAPVDEPMDTDEAKEPKEEPIETEKPRAARPSFKFNI 1500
Query: 520 CNGKM-QMDKLKVLENEYAEKFKELE 544
C+G ++ L E + A KE E
Sbjct: 1501 CDGGFTELHSLWANEEKVARNGKEYE 1526
Score = 43 (20.2 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 760 PGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTENFM 819
P V DLEN+ A I+K+ + + L+++ E S + +
Sbjct: 1614 PDNVGPLAQRFADLENIAESQANIAKESSAGNRNANAVLHKTLVQLDEILSDMKADVSRL 1673
Query: 820 DSPPGEEQIATV 831
P Q+ATV
Sbjct: 1674 --PSTFTQLATV 1683
Score = 42 (19.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 27/124 (21%), Positives = 49/124 (39%)
Query: 431 LSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSI-RGIQKKCQKQMAKLRHKQLE 489
LS V+ YQ+ Q E E+ K +K+ + K +Q ++ ++L
Sbjct: 1162 LSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDPDYWEKLLKHHYEQDREIELQKLG 1221
Query: 490 EKKDIDKR--YEEQKAQLETKKRTEAAVI---RYHCNGKMQMDKLKVLENEYAEKFKELE 544
+ K + K+ Y + + K+ + G D L E++Y EK K+
Sbjct: 1222 KGKRVRKQINYASENMGTDWSKQNQTQDDDDDNESYRGSDNGDGLNSDEDDYDEK-KKRR 1280
Query: 545 RDRD 548
RD +
Sbjct: 1281 RDEE 1284
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 180 (68.4 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 36/98 (36%), Positives = 62/98 (63%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG+++ ++ A+ +N G+ +F+FLL TRA I L++ VII+ SDW+P N
Sbjct: 969 YERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1028
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEEK+ +AK+
Sbjct: 1029 DIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKK 1066
Score = 57 (25.1 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 462 QKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKK-RTEAAVIRYH- 519
++D + ++ G + ++ ++E D D+ E ++ +ET+K R +++
Sbjct: 1441 KEDATETVNGATSEPATDAESEQNAPVDEPMDTDEAKEPKEEPIETEKPRAARPSFKFNI 1500
Query: 520 CNGKM-QMDKLKVLENEYAEKFKELE 544
C+G ++ L E + A KE E
Sbjct: 1501 CDGGFTELHSLWANEEKVARNGKEYE 1526
Score = 43 (20.2 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 760 PGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTENFM 819
P V DLEN+ A I+K+ + + L+++ E S + +
Sbjct: 1614 PDNVGPLAQRFADLENIAESQANIAKESSAGNRNANAVLHKTLVQLDEILSDMKADVSRL 1673
Query: 820 DSPPGEEQIATV 831
P Q+ATV
Sbjct: 1674 --PSTFTQLATV 1683
Score = 42 (19.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 27/124 (21%), Positives = 49/124 (39%)
Query: 431 LSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSI-RGIQKKCQKQMAKLRHKQLE 489
LS V+ YQ+ Q E E+ K +K+ + K +Q ++ ++L
Sbjct: 1162 LSSFKVASYQTKETEGQEEEEEEETEVIKEDEKEPDPDYWEKLLKHHYEQDREIELQKLG 1221
Query: 490 EKKDIDKR--YEEQKAQLETKKRTEAAVI---RYHCNGKMQMDKLKVLENEYAEKFKELE 544
+ K + K+ Y + + K+ + G D L E++Y EK K+
Sbjct: 1222 KGKRVRKQINYASENMGTDWSKQNQTQDDDDDNESYRGSDNGDGLNSDEDDYDEK-KKRR 1280
Query: 545 RDRD 548
RD +
Sbjct: 1281 RDEE 1284
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 183 (69.5 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 72/233 (30%), Positives = 108/233 (46%)
Query: 23 QRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFH 81
++FG Y R+DG + L+ FN GS FVFLL TRA + L + V+IF
Sbjct: 1137 RQFG---YLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFD 1193
Query: 82 SDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMA 141
SDW+P DL+A R Q +++V RL + +VEE++L A+ Y NM
Sbjct: 1194 SDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAAR-------YKLNMD--- 1243
Query: 142 KFQPLVQATFFEQTLLNDVVQEF-STILTQNG----EDNDTRKFNII-LKVKQSQGTYST 195
+ ++QA F+Q Q+F TIL Q+ E+N+ +I + + +S+
Sbjct: 1244 --EKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEI 1301
Query: 196 SFPLFGESKVEGMDEERPHIFWTNLL-EGKHPCWKYYSGSSQGSRKRVQYFDD 247
+ E K E DEE H L+ E + P W + R QY +D
Sbjct: 1302 FKRMDAERKKE--DEEI-HPGRERLIDESELPDW-LTKDDDEVERFHYQYDED 1350
Score = 56 (24.8 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 34/147 (23%), Positives = 67/147 (45%)
Query: 409 SCKKGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFS-- 466
S ++ E DY SL + KE + ++ D +++ S+ +++ K D S
Sbjct: 1357 SRQRKEVDYTDSLTE--KEWLK-AIDDGAEFDEEEEEDDSKRKRRKRKNRKEESDDDSLI 1413
Query: 467 ---RSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
R + + K+ +KQM K+ ++ +D + E +L +++R Y+ K
Sbjct: 1414 LKRRRRQNLDKRSKKQMHKIMSAVIKHNQD-GRTLSEPFMKLPSRQRLPD----YYEIIK 1468
Query: 524 MQMDKLKVLEN----EYAEKFKELERD 546
+D K+L+ +YA+ ELE+D
Sbjct: 1469 RPVDIKKILQRIEDCKYAD-LNELEKD 1494
Score = 39 (18.8 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 810 SSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENAISLN 862
+S N ++ D +E+IAT + +AV + L++ K++ S+ S N
Sbjct: 1556 NSDNDDDDGGDDGSDDEEIATTSAAAV---KMKLKLNKSLASAPATPTQSSSN 1605
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 191 (72.3 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 834 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 893
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 894 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 936
Score = 43 (20.2 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G KK +
Sbjct: 1153 LECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG-KGPGKK-RGPTI 1210
Query: 482 KLRHKQLEEKKDIDKRYEEQ 501
K+ Q+ K I ++EE+
Sbjct: 1211 KISGVQVNVKSII--QHEEE 1228
Score = 41 (19.5 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 985 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1044
Query: 219 NLL 221
++
Sbjct: 1045 EII 1047
Score = 40 (19.1 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1033 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1077
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 190 (71.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 63/203 (31%), Positives = 105/203 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 839 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 898
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKF---- 143
DL+A R Q +Q+ ++RL + TVEE ++ AK+ D Q M +
Sbjct: 899 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRMDTTGRTVLDN 958
Query: 144 -QPLVQATFFEQTLLNDVVQEFSTILTQN--GEDNDTRKFNI--ILKVKQS----QGTYS 194
+ F + L+ +++ + L + GE+++ ++ +I IL++ ++ QG+ +
Sbjct: 959 SSANSNSNPFNKEELSAILKFGAEDLFKEAEGEESEPQEMDIDEILRLAETRESDQGSSA 1018
Query: 195 TSFPLFGESKVEG--MDEERPHI 215
T L + KV MDE P +
Sbjct: 1019 TD-ELLSQFKVANFTMDESTPDL 1040
Score = 45 (20.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 389 RKQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQ- 447
+KQK D+KE+ E K K+G+ D S + KE + + K K Q ++Q
Sbjct: 1389 KKQKKDNKENKE--KTGTPKKEKEGDKDKKRSKPK--KEKAKPAGKG-KKAQGPVHITQG 1443
Query: 448 SEIVSHRQELFKVAQKDFS---RSIRGIQKKCQKQMAK 482
SE + +E ++ Q+ FS +R + KK KQ+ K
Sbjct: 1444 SEPIPIGEEDDELDQETFSICKERMRPV-KKALKQLDK 1480
Score = 44 (20.5 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 247 DLQKKPELEIDEVA-KKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSST 299
DL +KP + DE+ ++QRR Q ++ ++ S +K+ + DS +
Sbjct: 1039 DLDEKPGRDWDEIIPEEQRRKVEEEQKQKEMEDIYMLPRSRSSNKKAQANDSDS 1092
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 471 GIQKKCQKQMAKLRHKQLEEKKDIDKRYEE-QKAQLETKKRTEAA 514
G +K K+ K +K+ +EK K+ +E K + +K + E A
Sbjct: 1381 GAEKTPTKKKQKKDNKENKEKTGTPKKEKEGDKDKKRSKPKKEKA 1425
Score = 40 (19.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 32/146 (21%), Positives = 65/146 (44%)
Query: 477 QKQMAKLRHKQLE-EKKDI----DKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKV 531
++Q K+ +Q + E +DI R +KAQ + +++ +G D +
Sbjct: 1054 EEQRRKVEEEQKQKEMEDIYMLPRSRSSNKKAQANDSDSDVGSKLKHRSSGS---DS-ET 1109
Query: 532 LENEYAEKFKELERDRDVRLENLEALHVASMK---KLSDKQTSWVEQVKSWLQ-IQLSNK 587
++E ++ K R R R N+E A ++ K K + +E++++ + +L K
Sbjct: 1110 DDSEDDKRPKRRGRPR-ARKNNVEGFTDAEIRRFIKAYKKFGAPLERLEAIARDSELVEK 1168
Query: 588 PSSN--EYGHSVE--CLQAVEQHNAH 609
++ G V C+ AV++H H
Sbjct: 1169 SIADLKRLGELVHNSCVTAVQEHEEH 1194
Score = 40 (19.1 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 24/107 (22%), Positives = 45/107 (42%)
Query: 396 KESLELAKKHLHFSCKKGEADYVYSLLQ----CLKEVFELSMKDVSKYQSNARLSQSEIV 451
KE + KK L K E V LQ CL ++ + + + Y + +I
Sbjct: 1465 KERMRPVKKALKQLDKPDEGLSVQDQLQHTRTCLLKIGDRITECLKSYSDPEHI---KIW 1521
Query: 452 SHRQELFKVAQKDF-SRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKR 497
+F +F ++ + + KK QK+ ++ K+ ++K D K+
Sbjct: 1522 RRNLWIFVSKFTEFGAQKLHRLYKKAQKKRSQEGEKEHKKKDDPIKK 1568
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 191 (72.3 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 43/103 (41%), Positives = 64/103 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 841 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 900
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q +Q+ ++RL + TVEE+++ AK+ D
Sbjct: 901 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 943
Score = 47 (21.6 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 43/209 (20%), Positives = 83/209 (39%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
+K+ +K+ + + K + +KD + E++K++ + K++ + + K + +
Sbjct: 1397 KKQKKKENKENKEKPVSSRKDREGDKEKKKSK-DKKEKVKGGDAKSSSKSKRSQGPVHIT 1455
Query: 533 ENEYAEKFKELERDRDVRLENLEAL--HVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSS 590
E + D D+ E + +KK KQ ++ + +Q QL + S
Sbjct: 1456 AGSEPVPIGE-DEDDDLDQETFSICKERMRPVKKAL-KQLDKPDKGLN-VQEQLEHTRSC 1512
Query: 591 N-EYGHSV-ECLQAV-EQHNA---HENLENNASNSIHISAGQNHDKLINIITPVSGEGRL 644
+ G + ECL+A EQ + NL S A + H KL + +
Sbjct: 1513 LLKIGDRIAECLRAYSEQEHIKLWRRNLWIFVSKFTEFDARKLH-KLYKMAHKKRSQEEE 1571
Query: 645 ESPVIQETVAG--PLRLNNGGDKLDTIAS 671
E +T+ G P R G D++ S
Sbjct: 1572 EQKKKDDTLGGKKPFRPEASGSSRDSLIS 1600
Score = 41 (19.5 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 172 GEDNDTRKFNI--ILKVKQS-QGTYSTSFP--LFGESKVEG---MD-----EERPHIFWT 218
GE+++ ++ +I IL++ ++ + STS L + KV M+ EERPH W
Sbjct: 992 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1051
Query: 219 NLL 221
++
Sbjct: 1052 EII 1054
Score = 40 (19.1 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
++L+++P + DE+ +++R V + + LEE + R + T
Sbjct: 1040 EELEERPHKDWDEIIPEEQRKK---VEEEERQKELEEIYMLPRIRSST 1084
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 422 LQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMA 481
L+C+ EL K V+ + L + VS QE + +++ S +G K+ +
Sbjct: 1160 LECIARDAELVDKSVADLKRLGELVHNSCVSAMQEYEEQLKENASEG-KGPGKR-RGPTI 1217
Query: 482 KLRHKQLEEKKDIDKRYEEQ 501
K+ Q+ K I ++EE+
Sbjct: 1218 KISGVQVNVKSII--QHEEE 1235
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 168 (64.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DGN ++ A+ FN S +F+F+L TRA I L++ VI++ SDW+P
Sbjct: 488 YCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQV 547
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + +KVFRL + TVEE+++
Sbjct: 548 DLQAMDRAHRIGQRKPVKVFRLITDNTVEERIV 580
Score = 57 (25.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAA 514
SR+ +Q++C ++ + + ++EEK+ +K+ K Q K++ E +
Sbjct: 976 SRTAMELQRRCNTLISLIEKENMEIEEKERAEKKRRTPKGQSAQKRKAEVS 1026
Score = 52 (23.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/168 (19%), Positives = 69/168 (41%)
Query: 440 QSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYE 499
+ ++ ++E +S + K +K ++ K+ Q K K + DID
Sbjct: 800 EEQRKIDEAEPLSPEETEEK--EKLLTQGFTNWNKRDFNQFIKANEKY--GRDDIDNIAR 855
Query: 500 EQKAQLETKKRTEAAVIRYHCNGKMQMDKLKV-LENEYA--EKFKELERDRDVRLENLEA 556
E + + + +AV CN ++K+ +E A ++ +++ DV++ +A
Sbjct: 856 EVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDVKIARYKA 915
Query: 557 -LHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAV 603
H ++ ++K ++ E+ +L L EY + E Q V
Sbjct: 916 PFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKEYVYE-ELRQCV 962
Score = 43 (20.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 532 LENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK 577
L N E ++E ++ +L +H+A +K ++ W+E K
Sbjct: 675 LYNFEGEDYREKQKVGVFIFGHLIFVHIAVLKSINLSLIEWIEPPK 720
Score = 39 (18.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRR 265
W S ++ ++R L +K +EI+E A+K+RR
Sbjct: 972 WFIKSRTAMELQRRCNTLISLIEKENMEIEEKERAEKKRR 1011
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 165 (63.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 63/244 (25%), Positives = 107/244 (43%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ + A++ +N S +F+F+L TRA I L++ VII+ SDW+P +
Sbjct: 478 YCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQS 537
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A+ R Q +Q++VFRL + TV+E+++ A+ D M++ Q +
Sbjct: 538 DLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLG 597
Query: 149 ATFFEQTLLNDVVQEFSTI-LTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
+ + Q F+ T + +D DT I+ K + + E+ +
Sbjct: 598 KGDMISMIRHGAEQVFAAKDSTISDDDIDT----ILEKAEVKTAELNEKMGKIDENNLRN 653
Query: 208 MDEERPHIFWTNLLEGKHPCWKYYSGSSQ-----GSRKR-VQYFDDLQKKPELEIDEVAK 261
M E F EG++ K G R+R Y DL K + +
Sbjct: 654 MTFEDNAKFTVYQFEGENYKAKQADGMGHFWIEPPKRERKANYQVDLYYKEAMRAGNPTE 713
Query: 262 KQRR 265
KQ +
Sbjct: 714 KQSK 717
Score = 59 (25.8 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 29/126 (23%), Positives = 57/126 (45%)
Query: 445 LSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQ 504
L EI +R+ + VA++ + + K+ +K+ A+ K + + + + +E+KA+
Sbjct: 739 LLDKEIYHYRKTIGYVAERP--KDVP--PKEAEKRQAE-EQKLINNARPLTDKEQEEKAE 793
Query: 505 LETKKRTEAAVIRYHC----NGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVA 560
L T+ T+ + N K + L+ + E +E++ V E +E L
Sbjct: 794 LLTQSVTDWTKREFQQFVRGNEKYGREDLESIAKEMERPLEEIQSYAKVFWERIEELQ-D 852
Query: 561 SMKKLS 566
S K LS
Sbjct: 853 SEKVLS 858
Score = 51 (23.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 28/124 (22%), Positives = 56/124 (45%)
Query: 427 EVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHK 486
E+ S+ D +K + + +E R++L +A K+ R + IQ AK+ +
Sbjct: 793 ELLTQSVTDWTKREFQQFVRGNEKYG-REDLESIA-KEMERPLEEIQS-----YAKVFWE 845
Query: 487 QLEEKKDIDK---RYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKEL 543
++EE +D +K + E+ +A+++ K + A+ K +L++ K
Sbjct: 846 RIEELQDSEKVLSQIEKGEARIQRKYAVKKALDAKIAKYKAPFQQLRISYGTNKGKTYTE 905
Query: 544 ERDR 547
E DR
Sbjct: 906 EEDR 909
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 182 (69.1 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1098 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1157
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1158 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1205
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1206 AGMFDQKSSSHERRAFLQAILEHEEENE 1233
Score = 54 (24.1 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 41/190 (21%), Positives = 85/190 (44%)
Query: 344 KLREDV-KDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESL--E 400
K R +V KD V + +E R R P L L ++ I++K+S +
Sbjct: 1352 KRRRNVDKDPVKEDVE--KAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQ 1409
Query: 401 LAKKHLHFSCKKGEADYVYSLLQCLKEVFELSMKDV---SKYQSNARLSQSE-IVSHRQE 456
L++ + +K +Y Y L++ K V +K+ KY+S L + ++ H +
Sbjct: 1410 LSEVFIQLPSRKDLPEY-YELIR--KPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQ 1466
Query: 457 LFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
F + + + SI + + K ++++AK + EE + ++ +E++++ E K +
Sbjct: 1467 TFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESE-EESNEEEEEDDEEESESEAK----S 1521
Query: 514 AVIRYHCNGK 523
++ N K
Sbjct: 1522 VKVKIKLNKK 1531
Score = 45 (20.9 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 487 QLEEKKDIDKRYEEQKAQLETKKRTEAAVI-RYHCNGKMQMDKLKVLEN 534
QL +KD+ + YE + ++ KK E +Y G ++ D + + N
Sbjct: 1416 QLPSRKDLPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 1464
Score = 40 (19.1 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 645 ESPVIQETVAGPLRLNNGGDK-LDTIASAEASIAG-LKERIEDSNSGDNQENNE 696
ES ++V ++LN +K DT + G K + D +S + QE NE
Sbjct: 1514 ESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKPVVSDFDSDEEQEENE 1567
Score = 39 (18.8 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E E+SN + +++ E
Sbjct: 1488 SARQKIAKEEESEEESNEEEEEDDEE 1513
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 182 (69.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1200
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1201 AGMFDQKSSSHERRAFLQAILEHEEENE 1228
Score = 46 (21.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 438 KYQSNARLSQSE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKD 493
KY+S L + ++ H + F + + + SI + + K ++++AK EE +D
Sbjct: 1460 KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE-----EESED 1514
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDK 528
EE++ + E++ ++ ++ N K DK
Sbjct: 1515 ESNEEEEEEDEEESESEAKSVKVKIKLNKKD--DK 1547
Score = 39 (18.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E ++SN + +E+ E
Sbjct: 1501 SARQKIAKEEESEDESNEEEEEEDEE 1526
Score = 37 (18.1 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 469 IRGIQKKCQKQMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+R I+ ++M + +R K+ + ++++DK ++ + K+R
Sbjct: 1326 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRR 1368
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 182 (69.1 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1100 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1159
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1160 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1207
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1208 AGMFDQKSSSHERRAFLQAILEHEEENE 1235
Score = 46 (21.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 18/90 (20%), Positives = 44/90 (48%)
Query: 438 KYQSNARLSQSE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKD 493
KY+S L + ++ H + F + + + SI + + K ++++AK + EE +
Sbjct: 1467 KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESE-EESNE 1525
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
++ +E++++ E K + ++ N K
Sbjct: 1526 EEEEEDEEESEAEAK----SVKVKIKLNKK 1551
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 390 KQKI-DHK-ESLELAKKHLHFSCKKG-----EADYVYSLLQCLKEVFELSMKDVSKYQSN 442
K++I +HK SL +K + C E +Y L+ VF+ + + ++K + +
Sbjct: 1460 KERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEES 1519
Query: 443 ARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
S E +E + K I+ + KK +K
Sbjct: 1520 EEESNEEEEEEDEEESEAEAKSVKVKIK-LNKKEEK 1554
Score = 42 (19.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E E+SN + +E+ E
Sbjct: 1508 SARQKIAKEEESEEESNEEEEEEDEE 1533
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 182 (69.1 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + A L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1100 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1159
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1160 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1207
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E+N+
Sbjct: 1208 AGMFDQKSSSHERRAFLQAILEHEEENE 1235
Score = 46 (21.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 18/90 (20%), Positives = 44/90 (48%)
Query: 438 KYQSNARLSQSE-IVSHRQELFKV-AQKDFSRSI--RGIQKKCQKQMAKLRHKQLEEKKD 493
KY+S L + ++ H + F + + + SI + + K ++++AK + EE +
Sbjct: 1467 KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESE-EESNE 1525
Query: 494 IDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
++ +E++++ E K + ++ N K
Sbjct: 1526 EEEEEDEEESEAEAK----SVKVKIKLNKK 1551
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 390 KQKI-DHK-ESLELAKKHLHFSCKKG-----EADYVYSLLQCLKEVFELSMKDVSKYQSN 442
K++I +HK SL +K + C E +Y L+ VF+ + + ++K + +
Sbjct: 1460 KERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEES 1519
Query: 443 ARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
S E +E + K I+ + KK +K
Sbjct: 1520 EEESNEEEEEEDEEESEAEAKSVKVKIK-LNKKEEK 1554
Score = 42 (19.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 671 SAEASIAGLKERIEDSNSGDNQENNE 696
SA IA +E E+SN + +E+ E
Sbjct: 1508 SARQKIAKEEESEEESNEEEEEEDEE 1533
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 175 (66.7 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 450 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 509
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 510 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 547
Score = 49 (22.3 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 30/92 (32%), Positives = 41/92 (44%)
Query: 233 GSSQGSRKRVQYFDDLQK--KPELEIDEV----AKKQRRVASNCVNQSSLKPGL------ 280
GS GS + Q DD+ K EL D+V ++ QR V QSS L
Sbjct: 561 GSKSGSMTK-QELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKK 619
Query: 281 EEGKTVSRDKEGTSVDSSTIHWTCASSSTLVN 312
+ G T D + DSS IH+ A+ S L++
Sbjct: 620 KHGSTPPGDNKDVE-DSSVIHYDDAAISKLLD 650
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 173 (66.0 bits), Expect = 9.3e-09, Sum P(3) = 9.3e-09
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V ++++ + FN S +F FLL TRA I L++ VII+ SDW+P
Sbjct: 638 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 697
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q ++ ++RL + T+EE+++ L K+
Sbjct: 698 DLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKK 735
Score = 62 (26.9 bits), Expect = 9.3e-09, Sum P(3) = 9.3e-09
Identities = 34/164 (20%), Positives = 69/164 (42%)
Query: 440 QSNARLSQSEIVSHRQEL----FKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDI- 494
+S + S+ S+ +EL F++ Q + ++ G +K+ +KQ+ + L +D+
Sbjct: 841 ESKSSAGNSDRASYWEELLKDKFELHQAEELNAL-GKRKRSRKQLVSIEEDDLAGLEDVS 899
Query: 495 ---DKRYEEQKAQLETKKRTEAAVIR-YHCNGKMQMDKLKVLENEYAEKFKELERDRDVR 550
D+ YE + E + R Y G+ ++ ++E E F+ L ++ R
Sbjct: 900 SDGDESYEAESTDGEAAGQGVQTGRRPYRRKGRDNLEPTPLMEGE-GRSFRVLGFNQSQR 958
Query: 551 LENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG 594
A+ V ++ + W E V +++ NEYG
Sbjct: 959 -----AIFVQTLMRYGAGNFDWKEFVP---RLKQKTFEEINEYG 994
Score = 45 (20.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 20/92 (21%), Positives = 38/92 (41%)
Query: 367 DREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKKHLHFSCKK--GEADYVYSLLQC 424
D E L+AF+++ + ID E+ L + + K G +D +
Sbjct: 807 DEEENGFLKAFKVA--------NFEYIDENEAAALEAQRVAAESKSSAGNSDRASYWEEL 858
Query: 425 LKEVFELSMKDVSKYQSNARLSQSEIVSHRQE 456
LK+ FEL + + S+ ++VS ++
Sbjct: 859 LKDKFELHQAEELNALGKRKRSRKQLVSIEED 890
Score = 43 (20.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 556 ALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQH-NAHENLEN 614
A H M KL D E + +Q ++N+P S + S L+++ + N ++ +
Sbjct: 1260 AQHYNQMCKLLD------ENARESVQAYVNNQPPSTKVNESFRALKSINGNINTILSITS 1313
Query: 615 NASNS 619
+ S S
Sbjct: 1314 DQSKS 1318
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 202 ESKVEGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKR 241
ESK + +R +W LL+ K + ++ G RKR
Sbjct: 841 ESKSSAGNSDRAS-YWEELLKDKFELHQAEELNALGKRKR 879
Score = 40 (19.1 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 530 KVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ-TSWVEQVKSWLQIQLSNKP 588
K + EYAE++ L + E EA K++D S++E L P
Sbjct: 1185 KAMNYEYAEEYYGLGGSSSIPTEEPEA-----EPKIADTVGVSFIEVDDEMLDGLPKTDP 1239
Query: 589 SSNE--YGHSVECLQAVEQHNAHEN-----LENNASNSI 620
++E G +V+ QA + H N L+ NA S+
Sbjct: 1240 ITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESV 1278
Score = 38 (18.4 bits), Expect = 9.3e-09, Sum P(3) = 9.3e-09
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 853 HGLENAISL---NPLSKEQIPD--GATSCIPSAEVLLKVPESSPGEIVESGNING---DK 904
+GL + S+ P ++ +I D G + E+L +P++ P + S I G D
Sbjct: 1196 YGLGGSSSIPTEEPEAEPKIADTVGVSFIEVDDEMLDGLPKTDP---ITSEEIMGAAVDN 1252
Query: 905 NEAFATTSENFNHNLPLHERSLTNPLPVLTQN 936
N+A ++++N L + + + N
Sbjct: 1253 NQARVEIAQHYNQMCKLLDENARESVQAYVNN 1284
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 169 (64.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ A++ FN S RF+F+L TRA I L+S VI++ SDW+P
Sbjct: 532 YCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 591
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 592 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 624
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 175 (66.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 930 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 989
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 990 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1027
Score = 52 (23.4 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 44/172 (25%), Positives = 77/172 (44%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK--SWLQI-QLSNKPSS--N 591
E FK E+ + + ++N +A KL ++ EQ++ ++L + Q N P+ N
Sbjct: 1628 EPFKSEIHKGNYLEMKNK---FLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALN 1684
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI-HISAGQNHDKLINIITPVSGEGRLESPVI 649
VECL QH + E+L N +N++ H Q + L ++ V+ RL S +
Sbjct: 1685 ARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVT---RLPSMLS 1741
Query: 650 Q-ETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLNP 700
+ VA L+++ +I S + AG I+ G++Q N P
Sbjct: 1742 RIPPVAARLQMSER-----SILSRLTNRAG-DPTIQQGAFGNSQMYNNNFGP 1787
Score = 49 (22.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 30/92 (32%), Positives = 41/92 (44%)
Query: 233 GSSQGSRKRVQYFDDLQK--KPELEIDEV----AKKQRRVASNCVNQSSLKPGL------ 280
GS GS + Q DD+ K EL D+V ++ QR V QSS L
Sbjct: 1041 GSKSGSMTK-QELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGALAASAKK 1099
Query: 281 EEGKTVSRDKEGTSVDSSTIHWTCASSSTLVN 312
+ G T D + DSS IH+ A+ S L++
Sbjct: 1100 KHGSTPPGDNKDVE-DSSVIHYDDAAISKLLD 1130
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 680 KERIEDSNSGDNQENNE 696
KE IE +GD +++ E
Sbjct: 1533 KEPIETQQNGDKEDDEE 1549
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 169 (64.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 82/271 (30%), Positives = 118/271 (43%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF N FVFLL TRA + L++ VI SD++P N
Sbjct: 383 SYERVDGSVRGEERHLAIKNFGN-QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQN 441
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA---QNMRPMAKFQP 145
DL+A R Q + +KV RL TVEE V A + P A+ +P
Sbjct: 442 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTPGAQ-KP 500
Query: 146 LVQATFFEQTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTYST--SFPLFGES 203
+A F +L + + + + ED D + +I+ + K Q T + G
Sbjct: 501 SAEADFQLSEILKFGLDKLLSSEGSSMEDIDLK--SILGETKDGQWTPDALPAAAAAGGG 558
Query: 204 KVE---GMD-EERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV 259
+E G + E R + L EG+ Y S+ RK + +LQK + E
Sbjct: 559 SLEPEEGSELESRSYENHMYLFEGRD----YSKEPSKEDRKSFEQLVNLQKT----LLEK 610
Query: 260 AKKQRRVASNCVNQSSLKPGLEEGKTVSRDK 290
R N S L PGL EG + R K
Sbjct: 611 TSHGGRTLRN--KGSVLIPGLAEGP-IKRKK 638
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 164 (62.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 38/95 (40%), Positives = 59/95 (62%)
Query: 30 YERVDGNVL--DSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSP 86
Y R+DG + +KK A++ FN S +F+F+L TRA I L+S VI++ SDW+P
Sbjct: 542 YCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 601
Query: 87 VNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 602 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 63 (27.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 1009 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 1065
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 1066 KDVKKVK 1072
Score = 41 (19.5 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 842 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 899
Query: 211 ERPHIFW 217
E +FW
Sbjct: 900 EYSAVFW 906
Score = 40 (19.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 1008 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 1066
Score = 39 (18.8 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 1005 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 1052
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 149 (57.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ +++A ++ FN F F+L TR+ + L+ V+ + SDW+P D
Sbjct: 2086 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMD 2145
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128
+A R Q + ++RL S TVEE +L A Q +
Sbjct: 2146 AQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKR 2184
Score = 86 (35.3 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 55/209 (26%), Positives = 88/209 (42%)
Query: 712 LSMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSND 771
L P + LG ++ S N L + ++C +A SPE+ E+A SS
Sbjct: 2520 LVTPSSPLLLG-PPSVPISASVTNLPLGLRPEA-ELCAQALASPESL---ELASVASSET 2574
Query: 772 DLENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIAT- 830
++VP P KD +P A +P E L + +A S + P G+EQ A
Sbjct: 2575 SSLSLVP---P--KDLLPV-AVEILPVSEKNLSLTPSAPSLTLEAGSI--PNGQEQEAPD 2626
Query: 831 ----VAISAVPNEEAPLRVPKNVNSSHGLE---NAISLNPLSKEQIPDGATSCIPSAEVL 883
++ +P E +P V+ S+GLE +A S PL + D + + A+
Sbjct: 2627 SAEGTTLTVLPEGE---ELPLCVSESNGLELPPSAASDEPLQEPLEADRTSEELTEAKTP 2683
Query: 884 LKVPESSPGEIVESGNINGDKNEAFATTS 912
PE P E+V + + + AT+S
Sbjct: 2684 TSSPEK-PQELV-TAEVAAPSTSSSATSS 2710
Score = 73 (30.8 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 36/122 (29%), Positives = 60/122 (49%)
Query: 789 PDGATTSM--PDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVP 846
P A T + P +LL P S++ T + P G A + A+ + E+ L +
Sbjct: 2513 PPPAQTCLVTPSSPLLLGPPSVPISASVT----NLPLGLRPEAELCAQALASPES-LELA 2567
Query: 847 KNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNI-NGDKN 905
+V SS +++SL P K+ +P A +P +E L + S+P +E+G+I NG +
Sbjct: 2568 -SVASSE--TSSLSLVP-PKDLLPV-AVEILPVSEKNLSLTPSAPSLTLEAGSIPNGQEQ 2622
Query: 906 EA 907
EA
Sbjct: 2623 EA 2624
Score = 48 (22.0 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 20/106 (18%), Positives = 45/106 (42%)
Query: 417 YVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKC 476
Y L+ E E+S +++ + + ++ ++ ++E+F++ Q++ G + C
Sbjct: 2315 YAMKFLEASLE--EVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEEEEGPGAGDESSC 2372
Query: 477 QKQMAKLRH-KQLEEKKDIDKRYEEQK--AQLETKKRTEAAVIRYH 519
R K+ + + R E+ A+ ET+ VI H
Sbjct: 2373 GTGGGTHRRSKKAKAPERPGTRVSERLRGARAETQGANHTPVISAH 2418
Score = 40 (19.1 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 925 SLTNPLPVLTQNIIEERPVPS 945
S NP+ +L +I+ P PS
Sbjct: 2469 SAPNPITILPVHILPSPPPPS 2489
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 169 (64.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 58/194 (29%), Positives = 95/194 (48%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F N + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1151 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1210
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMA-KFQP-L 146
D +A+ R Q +Q+ V+RL T+EE++L AK+ Q M F+P
Sbjct: 1211 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSE----IQRMVISGGNFKPDT 1266
Query: 147 VQATFFEQTLLNDVVQEFSTILTQNGEDN-DTRKFNIILKVKQSQGTYSTSFP----LFG 201
++ LL+D +E L Q E+ + N + + K+ + Y+ L G
Sbjct: 1267 LKPKEVVSLLLDD--EELEKKLRQRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDG 1324
Query: 202 ESKVEGMDEERPHI 215
+ K EGM+ P +
Sbjct: 1325 KRKKEGMNLVIPFV 1338
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 181 (68.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 43/103 (41%), Positives = 58/103 (56%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSD 83
F Y R+DG + AA+ +N GS +FVFLL TRA I L++ VI+F SD
Sbjct: 528 FREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSD 587
Query: 84 WSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
W+P DL+A+ R Q +Q+ V+R T+EEKVL A Q
Sbjct: 588 WNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQ 630
Score = 38 (18.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 155 TLLNDVVQEFSTILTQNG 172
TLL +V+EF + T G
Sbjct: 1028 TLLTTIVKEFDDMNTTKG 1045
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 169 (64.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 79/293 (26%), Positives = 120/293 (40%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG ++ + L FN + LL TRA + L S VIIF SDW+P D
Sbjct: 1115 YLRLDGTT-KAEDRGMLLTFNEPGSEYFILLSTRAGGLGLNLQSADTVIIFDSDWNPHQD 1173
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQA 149
L+A R Q +++V RL + +VEEK+L AK Y N+ Q ++QA
Sbjct: 1174 LQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQA 1221
Query: 150 TFFEQTLLNDVVQEF-STILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGM 208
F+Q + + F IL +D + + V Q + F LF ++
Sbjct: 1222 GMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRR 1281
Query: 209 DEE--RPHIFWTNLLEGKHPCWKYYSGSS---------------QGSR--KRVQYFDDLQ 249
EE P + E + P W + +GSR K V Y D L
Sbjct: 1282 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1341
Query: 250 KKPELE------IDEVAK--KQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTS 294
+K L+ ++E+ + +Q++ + S P T SRDK+ S
Sbjct: 1342 EKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDES 1394
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 168 (64.2 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 42/100 (42%), Positives = 60/100 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+ER+DG++ + ++AA+ F+ S RFVFLL TRA I L++ VIIF SDW+P N
Sbjct: 876 HERIDGSIKGNDRQAAIDRFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQN 935
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128
DL+A R Q + +KV+RL + T E L+ K K
Sbjct: 936 DLQAQARCHRIGQDKMVKVYRLVTKNTYER--LMFDKASK 973
Score = 66 (28.3 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 54/266 (20%), Positives = 111/266 (41%)
Query: 440 QSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDID--KR 497
+S R S + S+R + K+ + + GI + + + + H + EE D + KR
Sbjct: 1979 KSKNRPPSSPMKSNRNQNVNNNHKNINNT-NGIVVEKKASLINILHSE-EEFSDNEGFKR 2036
Query: 498 YEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKV---LENEYAEKFKELERDRDVRLENL 554
+ +L KK+ +++ + H Q L+ LE EY++ D
Sbjct: 2037 IDTTDDRL--KKKQKSSPYKKHKQPTYQRPNLECGSDLETEYSDDDFGDSNTHD------ 2088
Query: 555 EALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLEN 614
+ +H+ + K +KQ++ Q+ L S KP+++ + H+ +N + N N
Sbjct: 2089 KYIHIPTNPK--NKQST---QLSETL---FSIKPTTSLFNHNKNFNN--NNNNNNNNNNN 2138
Query: 615 NASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEA 674
N +N+ + + N+ ++ T + S + + + +N G+ + T +
Sbjct: 2139 NNNNNNNNNNNNNNSNNNSLFTKNNNNNNSNSVLNIKNINS----SNNGNNIST--EFDF 2192
Query: 675 SIAGLKERIEDSNSGD-NQENNEPLN 699
S K ++N+ D N NN+ N
Sbjct: 2193 SPRTNKNNYSNNNNNDINNNNNDNNN 2218
Score = 55 (24.4 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 34/171 (19%), Positives = 72/171 (42%)
Query: 530 KVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLS-NKP 588
KVL N ++K E+ + ++ + AL V +L S+ + K ++L N+
Sbjct: 1204 KVLSNYNSDK--EIPENNKFTMDMMNALVV----ELEPSIHSYHLEKKRLFDLELKQNEE 1257
Query: 589 SSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINIITPVSGEGRLESPV 648
N + + + + + + +++S S +I+ + +K T V E ++
Sbjct: 1258 EENNNNNDNDKVNS-DSIEKESSSSSSSSPSSNINQDNSIEKKEENDTTVKDEKMVDIHE 1316
Query: 649 IQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLN 699
+QET P +N + T + + L D+++ D + +E LN
Sbjct: 1317 LQETKVEP-NVNANTNSTTTTTTTTTTTTTLLTEFNDNDNND-EGYHEYLN 1365
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 463 KDFSRSIRGIQKKCQKQMAKLRHKQLE-EKKDIDKRYEEQKAQLETKKRTEAAVIRYHC 520
K R++ + K +K+ +K K++E EKK +K + Q+ ++E KR + + Y C
Sbjct: 1507 KRLLRTMDFFKNKLEKE-SKNEKKKIEKEKKQEEKLKKRQEPKVEWTKREKDSF--YRC 1562
Score = 44 (20.5 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 677 AGLKERIEDSNSGDNQENNEPLN 699
+G I+D+N+ +N NN N
Sbjct: 1875 SGDNSNIQDNNNNNNNNNNNNKN 1897
Score = 42 (19.8 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 897 SGNINGDKNEAFATTSENFNHNLP 920
S N N D N + N N+NLP
Sbjct: 2202 SNNNNNDINNNNNDNNNNNNNNLP 2225
Score = 41 (19.5 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 585 SNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQN 627
+N ++N +++ N + N +NNA N+ + G++
Sbjct: 1935 NNNNNANNNNNNINDNNNTNNANNNNNNDNNAKNNNTFTYGKS 1977
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 897 SGNINGDKNEAFATTSENFNHNLPLHERSLTN 928
+ N N + N F + N N N L+ +++ +
Sbjct: 2148 NNNNNSNNNSLFTKNNNNNNSNSVLNIKNINS 2179
Score = 39 (18.8 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 843 LRVPKNVNSSHGLENAI--SLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNI 900
+ PK+ + S L+ + +LNP K Q A ++LL + I ++ N
Sbjct: 1834 INFPKDKSISKRLDFIVFYALNP-PKPQSKHSAFD-----KILLPIDSGDNSNIQDNNNN 1887
Query: 901 NGDKNEAFATTSENFNHN 918
N + N + N N
Sbjct: 1888 NNNNNNNNKNNNNKNNDN 1905
Score = 37 (18.1 bits), Expect = 5.2e-06, Sum P(4) = 5.2e-06
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 606 HNAHENLENNASNSIHISAGQNHDKL 631
+N + N NN +N+ + +A N++ +
Sbjct: 1922 NNNNNNNNNNNNNNNNNNANNNNNNI 1947
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 169 (64.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 56/208 (26%), Positives = 102/208 (49%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG+ ++ A+ +FN S F FLL TRA I L++ V+IF SDW+P N
Sbjct: 982 FQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQN 1041
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQP-- 145
DL+A+ R Q E + ++R + +VEE++L AK+ D Q + + +
Sbjct: 1042 DLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRE 1101
Query: 146 LVQATFFEQTLLNDVVQEFSTIL---TQNGEDNDTRKFN-----IILKVKQ--SQGTYST 195
+ + F++ L+ +++ + L +N E++ R + I+ + +Q + T T
Sbjct: 1102 TKKGSNFDKNELSAILRFGAEELFKEDKNDEESKKRLLSMDIDEILERAEQVEEKHTDET 1161
Query: 196 SFPLFGESKVEGM-DEERPHIFWTNLLE 222
L G KV + E FW+ ++
Sbjct: 1162 EHELLGAFKVANFCNAEDDGSFWSRWIK 1189
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 176 (67.0 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/99 (40%), Positives = 62/99 (62%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+++R+DG V ++++ ++ +FN+ S FVFLL TRA I L + V+IF SDW+P
Sbjct: 737 NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 796
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q + V+RL S TVEE+VL A++
Sbjct: 797 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 835
Score = 45 (20.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 482 KLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAV--IRYHCNG 522
+L+ Q EE+K D+ Y K QLE R + A+ I+ NG
Sbjct: 940 ELKKLQDEEQKRKDEEYV--KEQLEMMNRRDNALKKIKNSVNG 980
Score = 39 (18.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 523 KMQMDKLKVLENEYAEKFKELERDRDVRLENLE 555
K+Q ++ K + EY ++ E+ RD L+ ++
Sbjct: 943 KLQDEEQKRKDEEYVKEQLEMMNRRDNALKKIK 975
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 176 (67.0 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 29 SYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+Y R+DG + +Q FN + S +F+F+L TRA I L++ VII+ SDW+P
Sbjct: 473 NYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQ 532
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q +Q++VFRL + TVEEK++
Sbjct: 533 MDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIV 566
Score = 41 (19.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQG 191
+ L + +QE +L+Q R FN +K + G
Sbjct: 779 EPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYG 816
Score = 39 (18.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 813 NCTENFMDSPPGEEQIATVAISAVPNEEAPLRVPK 847
N N+++ PP E+ A A+ A E + PK
Sbjct: 679 NALGNWIE-PPKRERKANYAVDAYFREALRVSEPK 712
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 175 (66.7 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1067 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1126
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1127 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1164
Score = 49 (22.3 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 30/92 (32%), Positives = 41/92 (44%)
Query: 233 GSSQGSRKRVQYFDDLQK--KPELEIDEV----AKKQRRVASNCVNQSSLKPGL------ 280
GS GS + Q DD+ K EL D+V ++ QR V QSS L
Sbjct: 1178 GSKSGSMTK-QELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKK 1236
Query: 281 EEGKTVSRDKEGTSVDSSTIHWTCASSSTLVN 312
+ G T D + DSS IH+ A+ S L++
Sbjct: 1237 KHGSTPPGDNKDVE-DSSVIHYDDAAISKLLD 1267
Score = 48 (22.0 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK--SWLQI-QLSNKPSS--N 591
E FK E+ + + ++N +A KL ++ EQ++ ++L + Q N P+ N
Sbjct: 1770 EPFKSEVHKGNYLEMKNK---FLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALN 1826
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E+L N +N++
Sbjct: 1827 ARLAEVECLAESHQHLSKESLAGNKPANAV 1856
Score = 43 (20.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 680 KERIEDSNSGDNQENNE 696
KE IE +GD +E++E
Sbjct: 1675 KEPIETQQNGDKEEDDE 1691
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 177 (67.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDNDTR 178
A F+Q + + F + ++ E +++R
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
Score = 44 (20.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 233 GSSQGSRKRVQYFDDLQKKPELE------IDEVAKKQRRVASNCVNQSSLKPGLEEGKTV 286
G RK V Y D L +K L+ ++E+ ++ R+ S+ + G T
Sbjct: 1368 GRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTS 1427
Query: 287 --SRDKEGTS 294
SRDK+ S
Sbjct: 1428 TRSRDKDDES 1437
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 163 (62.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ A+ FN S +F+F+L TRA I L++ VI++ SDW+P
Sbjct: 453 YCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQV 512
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 513 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 545
Score = 53 (23.7 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EEK+ +K+ K K++ + A +GK
Sbjct: 918 SRTAMEFQRRCNTLISLIEKENMEIEEKERAEKKKRGAKVTASQKRKADLAAEN---SGK 974
Query: 524 MQMDKLK 530
K+K
Sbjct: 975 KDAKKVK 981
Score = 45 (20.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 31/153 (20%), Positives = 59/153 (38%)
Query: 362 INHRVDREPPSMLQAFEISLCWTAASLRK-QKIDHKESLELAKKHLHFSCKKGEADYVYS 420
+N R+ + S L+ F + T SL + D++E +L+ K E Y+
Sbjct: 615 MNERLQKMGESSLRNFTMD---TEMSLYNFEGEDYREKQKLSMMEW-IEPPKRERKANYA 670
Query: 421 LLQCLKEVFELSMKDVSKYQSNARLSQ-SEIVSHRQELFKVAQKD--FSRSIRGIQKKCQ 477
+ +E +S V K + + LF++ +K+ + R G +
Sbjct: 671 VDAYFREALRVSEPKVPKAPRPPKQPNIQDFQFFPPRLFELLEKEILYYRKTIGYKVPRN 730
Query: 478 KQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKR 510
+ Q EE+K ID+ + E K++
Sbjct: 731 PDLPNAAQVQKEEQKKIDESMPLNPEETEEKEK 763
Score = 39 (18.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R A +Q
Sbjct: 914 WFIKSRTAMEFQRRCNTLISLIEKENMEIEEKERAEKKKRGAKVTASQ 961
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETK 508
Q+ K K+++E ++ E+K +L T+
Sbjct: 738 QVQKEEQKKIDESMPLNPEETEEKEKLLTQ 767
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 180 (68.4 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 38/98 (38%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +FVFLL TRA I L++ VII+ SDW+P N
Sbjct: 1095 YERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1154
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE+V +AK+
Sbjct: 1155 DIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKR 1192
Score = 53 (23.7 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 564 KLSDKQTSWVEQVKSWLQIQLSNKPSS-----NEYGHSVECLQAVEQHNAHENLENNA-S 617
KL ++ EQ++ + L+ PS N VECL QH + E+L N +
Sbjct: 1817 KLLEQALVIEEQLRRAAYLNLAQDPSHPAMSLNARFAEVECLAESHQHLSKESLAGNKPA 1876
Query: 618 NSI-HISAGQNHDKLINIITPVS 639
N++ H Q + L ++ + VS
Sbjct: 1877 NAVLHKVLNQLEELLSDMKSDVS 1899
Score = 45 (20.9 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 555 EALHV--ASMKKLSDKQTSWVEQVKSWLQIQLSN-KPSSNEYGHSVECLQAVEQHNAHEN 611
EA+H ++ +L D+ +E+ +SW LS+ K +S Y E E+ E
Sbjct: 1236 EAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSFKVAS--YATKEE-----EEEEETEI 1288
Query: 612 LENNASNS 619
++ +A NS
Sbjct: 1289 IKQDAENS 1296
Score = 45 (20.9 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 30/118 (25%), Positives = 45/118 (38%)
Query: 774 ENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAI 833
++V + AP + + ATTS P A +S E+ D +E+ T A
Sbjct: 1530 QDVAALEAPPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGED-KDKDSEKEKDKTSAE 1588
Query: 834 -SAVPNE-EAPL-RVPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPE 888
S V E EA + P +V + +E A S ++ P E K PE
Sbjct: 1589 KSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPKEET--KDPE 1644
Score = 43 (20.2 bits), Expect = 9.2e-08, Sum P(3) = 9.2e-08
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 625 GQNHDKLI---NIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKE 681
G N DK N +TP + +P ++ G + + + D ++ ++ + +E
Sbjct: 1541 GGNVDKSATTSNSVTPATSAAPSPAPASEK---GEDKDKDSEKEKDKTSAEKSEVKQEQE 1597
Query: 682 RIEDSNSGD-NQEN 694
ED GD QEN
Sbjct: 1598 AEEDKKPGDVKQEN 1611
Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 202 ESKVEGMDEERPH-IFWTNLLEGKHPCWKYYSGSSQGSRKRVQ 243
E+++ D E +W LL + + G S G KRV+
Sbjct: 1285 ETEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVR 1327
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 150 (57.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SY ++DG + ++ + +N + FVFLL TR + L+ + VII+ DW+P
Sbjct: 876 SYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPST 935
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A +R Q +Q+ V+RL + T+EEK+
Sbjct: 936 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 967
Score = 70 (29.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 38/170 (22%), Positives = 68/170 (40%)
Query: 785 KDQIPD--GATTSMPDGEVLLRVPEAASSSNCT----ENFMDSPPGEEQIATVAISAVPN 838
K ++P GA ++P + + P++ +S+N T E F G I + P
Sbjct: 1032 KRKLPPAFGADHNIP---ICRKFPDSNASTNDTTSSEEKFTAKGAGVNTITSD--QGDPL 1086
Query: 839 EEAPLRVPKNVNSSHGLENAISLNPLSKE-QIPDGATSCIPSAEVLLKVPESSPGEIVES 897
++AP + P+N+ S G E P+ +E + G C S SS I E
Sbjct: 1087 KDAP-QTPRNLTGSGGPEEKTKAVPILEELSVTSGRVDCSSSPRTSKMDGLSSEESIHEK 1145
Query: 898 GNINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNIIEERPVPSNQ 947
++ D+ E+ +E N E + + +++EE + Q
Sbjct: 1146 QGLS-DRRESCQAQTEPLQENKE-SENNFSKHKSKTKHSVLEEETLEQLQ 1193
Score = 46 (21.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 63/280 (22%), Positives = 102/280 (36%)
Query: 517 RYHCNGKMQ-MDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQ 575
R C + + + + K EN ++ K K + + E LE L K K T
Sbjct: 1152 RESCQAQTEPLQENKESENNFS-KHKSKTKHSVLEEETLEQLQ---RPKSKPKNTKHCRD 1207
Query: 576 VK-SWLQI-QLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLIN 633
+ +I L K + +E + EQ N LE S+ + + HD +++
Sbjct: 1208 ARFEGTRIPHLVKKRRYQKQDSEIES-ETSEQSNDDYVLEKLFKKSVGVHSVMRHDAIMD 1266
Query: 634 IITPVSGEGRLESPVIQETVAGPLRLNN----GGDKLDTIASAEASI----AGLKERI-E 684
P E+ + + LRL+ G + I AG+K R +
Sbjct: 1267 GADPDYVLVEAEANRVAQDALKALRLSRQQCLGASSGVPTWTGHRGISGAPAGIKSRFGQ 1326
Query: 685 DSNSGDNQENNEPLNPCSREQILDGATLSMPDG------HIQLGVTETISSSDGA--GNC 736
NS + ++ P + S+E+ DG + DG H G E SS GA +
Sbjct: 1327 KRNSKFSVQH--PSSASSKEKCQDG--VPRKDGKDNASEHFS-GKVEDAESSPGALPSSS 1381
Query: 737 LLPVHSSGGKICDEARLSPE---AQVPGEVAETVSSNDDL 773
LL + + RL E + P T + +DDL
Sbjct: 1382 LLAKMRARNHLILPQRLESENAHQEAPAPPPPT-TEHDDL 1420
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 169 (64.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSD 83
F Y R+DG+ + A+ +N S +F+FLL TRA I L+S VI++ SD
Sbjct: 491 FRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSD 550
Query: 84 WSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
W+P DL+A+ R Q +Q+KVFR + +EEKVL A Q
Sbjct: 551 WNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQ 593
Score = 47 (21.6 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 589 SSNEYGHSVECLQAVEQHNAHENLENN 615
S+N G+S + L + QH A E EN+
Sbjct: 610 SNNNVGNSKDDLIGMIQHGAKEVFENS 636
Score = 38 (18.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 420 SLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQ 473
S ++ ++F + + + Y+ LSQ E V ++E QK ++ I +Q
Sbjct: 871 SEIERYSKMFWQNYQKIEGYEKY--LSQIEAVEKKREKLINQQKLLAKKIESLQ 922
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 169 (64.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSD 83
F Y R+DG+ + A+ +N S +F+FLL TRA I L+S VI++ SD
Sbjct: 491 FRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSD 550
Query: 84 WSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
W+P DL+A+ R Q +Q+KVFR + +EEKVL A Q
Sbjct: 551 WNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQ 593
Score = 47 (21.6 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 589 SSNEYGHSVECLQAVEQHNAHENLENN 615
S+N G+S + L + QH A E EN+
Sbjct: 610 SNNNVGNSKDDLIGMIQHGAKEVFENS 636
Score = 38 (18.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 420 SLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQ 473
S ++ ++F + + + Y+ LSQ E V ++E QK ++ I +Q
Sbjct: 871 SEIERYSKMFWQNYQKIEGYEKY--LSQIEAVEKKREKLINQQKLLAKKIESLQ 922
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 170 (64.9 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 40/99 (40%), Positives = 59/99 (59%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+Y+R+DG + S ++ ++ +FN S FVFLL TRA I L++ VIIF SDW+P
Sbjct: 746 NYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQ 805
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q + V+R S TVEE +L A++
Sbjct: 806 ADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARR 844
Score = 48 (22.0 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 80/425 (18%), Positives = 164/425 (38%)
Query: 445 LSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLE-EKKDIDKRYEEQKA 503
L Q E+ ++ E + I+++ ++ +A R K+ E E+++ ++R ++
Sbjct: 927 LKQFEVTDYKAEDLNWDDIIPEEEMERIEEE-ERMLAAQRAKEEERERREEEERENDEDH 985
Query: 504 QLETKKRTEAAVI-RYHCNGKMQMDK-LKVLENEYAEKFKELERDRDVRLENLEALHVAS 561
T KRT ++ R +M +K +++L KF ++ D ++ E L
Sbjct: 986 PSRTYKRTTKSITKRQQRREEMVREKEIRLLYRAMI-KFGLVDERFDTIVKEAE-LQATD 1043
Query: 562 MKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQ--AVEQHNAHENLENNASNS 619
K++ V+ ++ +L + N+ ++ V+ NA E + +
Sbjct: 1044 PKRIYSLSADMVKACDEAVE-RLGADDTKNKQPRKAILIEFKGVKNINA-ETVTLRVKDL 1101
Query: 620 IHIS-AGQNHDKLINIIT-PVSGEGRLE-SPVIQETVAGPLRLNNGGDKLDTIASAEASI 676
H+ A + D L II P+ S I+E +N G + +
Sbjct: 1102 THLHRAYKGLDPLKQIIGYPIRSVHSWNCSWGIKEDSMLLAGINKHGFGCWQAIKNDPDL 1161
Query: 677 AGLKERIEDSNSGDNQENNEPLNPCSREQILDGA-TLSMPDGHIQLGVTETISSSDGAGN 735
GL ++I + +++E+ P + + G LS+ H L V +T + N
Sbjct: 1162 -GLHDKIFLDEAKNDKESRYV--PSAVHLVRRGEYLLSVVREHPDLFVVKTDQPTKRKYN 1218
Query: 736 CLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTS 795
P SS + + +S + + + + P + +D++ + +
Sbjct: 1219 RKAPTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGDETSP-EGTVGEDEVEEEPRQA 1277
Query: 796 MPDGEVLL-RVPEAASSSNCTENFMDSPPGEEQIATVA-----ISAVPNEEAPLRVPKNV 849
P L +AAS+ T N M + + + VA + + NE+A V +V
Sbjct: 1278 EPPKRALRSNSGKAASNKRTTRNSMKTHSAMDTLTAVAALDAELDNMSNEKAKEEVD-HV 1336
Query: 850 NSSHG 854
S +G
Sbjct: 1337 KSENG 1341
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 163 (62.4 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 70/261 (26%), Positives = 123/261 (47%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYER+DG+V ++ A++NF FVFLL TRA + L++ VI SD++P N
Sbjct: 389 SYERLDGSVRGEERHLAIKNFGQ-QPIFVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQN 447
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQD-KTPDGYAQNMR-PMAKFQPL 146
DL+A+ R Q + +K+ RL TVEE + A + + + + + +P
Sbjct: 448 DLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEGGQFALGVHKPQ 507
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGED-NDTRKFNIILKVKQSQGTYSTSFPLFGESK 204
+A+ + L+++++ +L+ G D NI+ + K + P E +
Sbjct: 508 -EASDLQ---LSEILKFGLDKLLSSEGSTVQDVELENILGETKGGKWVMDAVLPC-EEER 562
Query: 205 VEGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQR 264
E D+ H++ + EGK Y S + SR+ + FD L + I+E +K+ R
Sbjct: 563 NE--DDTENHMY---VYEGKD----Y---SKEPSREDKKAFDQLLDLQKALIEETSKEGR 610
Query: 265 RVASNCVNQSSLKPGLEEGKT 285
+ + ++L GL + T
Sbjct: 611 ALRNKA---NTLLTGLRDQST 628
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 166 (63.5 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 35/93 (37%), Positives = 58/93 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++A++ +N GS +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 511 YCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 570
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 571 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 603
Score = 49 (22.3 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ +Q++C + + + +LEEK+ +K+ K K++ + +G+
Sbjct: 976 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSSAQKRKMDGTP-----DGR 1030
Query: 524 MQMDKLKV 531
+ KLK+
Sbjct: 1031 GRKKKLKL 1038
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 165 (63.1 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 36/102 (35%), Positives = 58/102 (56%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
+ S Y R+DG+ ++ +Q + F+F+L TRA + L+S VI + SDW
Sbjct: 1274 YKSYKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDW 1333
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+P D +A+ R Q +Q+KVFRL + T+E+K+L AK+
Sbjct: 1334 NPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKE 1375
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 180 (68.4 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1103 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1162
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1163 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
Score = 50 (22.7 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1774 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1831
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1832 RFAEAECLAESHQHLSKESLAGNKPANAV 1860
Score = 48 (22.0 bits), Expect = 9.5e-08, Sum P(3) = 9.5e-08
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 640 GEGRLESPVIQETVAG----PLRLNNGGDKLDTIASAEASIAGLKERIE 684
GEG + +P+ +E P + + G+K++T A A + L ER+E
Sbjct: 1564 GEG-IRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLE 1611
Score = 40 (19.1 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSRE 320
LK G EE + E DSS IH+ + + L++ + + +
Sbjct: 1229 LKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATED 1273
Score = 38 (18.4 bits), Expect = 9.5e-08, Sum P(3) = 9.5e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1263 LLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1305
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 180 (68.4 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1103 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1162
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1163 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
Score = 50 (22.7 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1776 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1833
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1834 RFAEAECLAESHQHLSKESLAGNKPANAV 1862
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 43/169 (25%), Positives = 62/169 (36%)
Query: 640 GEGR---LESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIE-------DSNSG 689
GEG LE + P + + G+K++ A + L ER+E D G
Sbjct: 1564 GEGMRTPLEKDEAENQEEKPEKNSKTGEKMEAEADTPSPAPSLGERLEPRKVPLEDEGPG 1623
Query: 690 DNQENNEPLNPCSREQILDGATLSMPDGHIQLGVTETISSSDGAGNCLLPVHSSG--GKI 747
E EP P R AT S P + G + + DG P +G GK
Sbjct: 1624 GPGEM-EP-EPGYRGDREKSATESTPG---ERGEEKPL---DGQEQRERPEGETGDLGKR 1675
Query: 748 CDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSM 796
++ + E + PG + + SN E V P I DG T +
Sbjct: 1676 AEDVKGDRELR-PGPPRDELRSNGRREE--KVEKPRFMFNIADGGFTEL 1721
Score = 40 (19.1 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSRE 320
LK G EE + E DSS IH+ + + L++ + + +
Sbjct: 1229 LKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATED 1273
Score = 38 (18.4 bits), Expect = 9.5e-08, Sum P(3) = 9.5e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1263 LLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1305
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 180 (68.4 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1162 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1221
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1222 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1259
Score = 50 (22.7 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1833 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1890
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1891 RFAEAECLAESHQHLSKESLAGNKPANAV 1919
Score = 48 (22.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 640 GEGRLESPVIQETVAG----PLRLNNGGDKLDTIASAEASIAGLKERIE 684
GEG + +P+ +E P + + G+K++T A A + L ER+E
Sbjct: 1623 GEG-IRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLE 1670
Score = 40 (19.1 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSRE 320
LK G EE + E DSS IH+ + + L++ + + +
Sbjct: 1288 LKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATED 1332
Score = 38 (18.4 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1322 LLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1364
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 177 (67.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1230
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDNDTR 178
A F+Q + + F + ++ E +++R
Sbjct: 1231 AGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
Score = 42 (19.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 233 GSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRD-KE 291
G RK V Y D L +K L+ K AS+ + GL+ S+ +E
Sbjct: 1368 GRGSRHRKEVDYSDSLTEKQWLK-KITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEE 1426
Query: 292 GT 293
GT
Sbjct: 1427 GT 1428
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 161 (61.7 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 81/272 (29%), Positives = 117/272 (43%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF FVFLL TRA + L++ VI SD++P N
Sbjct: 383 SYERVDGSVRGEERHLAIKNFGK-QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQN 441
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA--KQDKTPDGYAQNMRPMAKFQPL 146
DL+A R Q + +KV RL TVEE V A K T + +P
Sbjct: 442 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTLGAQKPA 501
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGEDNDTRKFNIIL-KVKQSQGTYSTSFPLF--GE 202
+A L+++++ +L+ G D IL + K Q T + P GE
Sbjct: 502 AEADL----QLSEILKFGLDKLLSSEGSSMDEIDLKSILGETKDGQWT-PDALPAAAEGE 556
Query: 203 SKVEGMDEERPHIFWTN---LLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV 259
S+ + E N L EG+ Y S+ RK + +LQK +
Sbjct: 557 SREQEEGSELNSYGKENHMYLFEGRD----YSKEPSKEDRKSFEQLVNLQKT-------L 605
Query: 260 AKKQRRVASNCVNQSS-LKPGLEEGKTVSRDK 290
+K + N+ S L PGL EG + R K
Sbjct: 606 LEKTSHGGRSLRNKGSVLIPGLAEGP-IKRKK 636
Score = 52 (23.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQK 502
QKK Q+ AK R K +EEKK + E +K
Sbjct: 647 QKKRQEAAAK-RKKLMEEKKKAKEEAEHRK 675
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 177 (67.4 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L S VIIF SDW+P
Sbjct: 922 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 981
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 982 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1029
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDNDTR 178
A F+Q + + F + ++ E +++R
Sbjct: 1030 AGMFDQKSSSHERRAFLQAILEHEEQDESR 1059
Score = 39 (18.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 233 GSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEG 292
G RK V Y D L +K L KQ + A ++ + + K+ + K
Sbjct: 1167 GRGSRHRKEVDYSDSLTEKQWL-------KQLKAAIEEGTLEEIEEEVRQKKSSRKRKRD 1219
Query: 293 TSVDSST 299
+ SST
Sbjct: 1220 SEAGSST 1226
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 164 (62.8 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 80/291 (27%), Positives = 129/291 (44%)
Query: 24 RFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHS 82
R+ Y R+DG+ +++ L+ FN S F FLL TRA + L + VIIF +
Sbjct: 857 RWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDT 916
Query: 83 DWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAK 142
DW+P DL+A R Q ++++ RL + +VEE +L A Q DG + K
Sbjct: 917 DWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDG---KVIQAGK 973
Query: 143 FQPLVQATFFEQTLLNDVVQEFSTILTQNGEDN--DTRKFNIILKVKQSQGTYSTSFPLF 200
F ++T EQ + E N E++ D + N IL + + S
Sbjct: 974 FDN--KSTAEEQEAFLKRLLEADANGADNEENDSLDDDELNEILARSEEEKVLFASMDEE 1031
Query: 201 GES-KVEGMD-----EERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPEL 254
+S KV +E P +F ++ H K S +KRV+Y D L ++ L
Sbjct: 1032 RKSEKVPYKSRLIEKDELPAVFTEDI--SHHFEKKEKELSKMRDKKRVRYDDGLSEEQWL 1089
Query: 255 E--------IDEVAK-KQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVD 296
+ ++E K K+ R+A N++ ++ GL E + + D+ G D
Sbjct: 1090 KAMDDDNDTVEEAIKRKEERIAKRKRNKA-IREGLLE-EDIKDDEVGEEDD 1138
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 161 (61.7 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 32/93 (34%), Positives = 55/93 (59%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FNN S F+F+L ++A + L + +++F DW+P N
Sbjct: 534 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 593
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
D +A+ R+ D Q + ++RL S T+EEK+L
Sbjct: 594 DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIL 626
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 175 (66.7 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1065 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1124
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1125 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1162
Score = 48 (22.0 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK--SWLQI-QLSNKPSS--N 591
E FK E+ + + ++N +A KL ++ EQ++ ++L + Q N P+ N
Sbjct: 1764 EPFKSEVHKGNYLEMKNK---FLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALN 1820
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI 620
VECL QH + E+L N +N++
Sbjct: 1821 ARLAEVECLAESHQHLSKESLAGNKPANAV 1850
Score = 46 (21.3 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 30/92 (32%), Positives = 42/92 (45%)
Query: 233 GSSQGSRKRVQYFDDLQK--KPELEIDEV----AKKQRRVASNCVNQS----SLKPGLEE 282
GS GS + Q DD+ K EL D+V ++ QR QS SL G ++
Sbjct: 1176 GSKSGSMTK-QELDDILKFGTEELFKDDVEGMMSQGQRPTTPIPDVQSTKGGSLAAGAKK 1234
Query: 283 --GKTVSRDKEGTSVDSSTIHWTCASSSTLVN 312
G T D + DSS IH+ A+ S L++
Sbjct: 1235 KHGGTPPGDNKDVE-DSSVIHYDDAAISKLLD 1265
Score = 45 (20.9 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 22/106 (20%), Positives = 50/106 (47%)
Query: 488 LEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDR 547
L +K + Y ++K + T+K ++ I+ +D+++ + + K+ R R
Sbjct: 1563 LPDKMEAQLGYTDEK-ESGTQKPKKSLEIQALPTA---LDRVEAEDKHQSSDSKD--RAR 1616
Query: 548 DVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEY 593
+ R+E +E + + L ++ E V L++ LS+ SN++
Sbjct: 1617 EERMEEVEKAQGSPEQPLKEETLPDKEPVPDKLELSLSH---SNDF 1659
Score = 37 (18.1 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 680 KERIEDSNSGDNQENNE 696
KE E +GD +E+ E
Sbjct: 1669 KEPTETQQNGDREEDEE 1685
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 175 (66.7 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 999 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1058
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1059 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1096
Score = 50 (22.7 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 28/92 (30%), Positives = 41/92 (44%)
Query: 233 GSSQGSRKRVQYFDDLQK--KPELEIDEVA---KKQRRVASNCVNQSSLKPGL------- 280
GS GS + Q DD+ K EL D+V + +R A+ + S K G
Sbjct: 1110 GSKSGSMTK-QELDDILKFGTEELFKDDVEGMMSQGQRPATPIPDVQSSKGGALAASAKK 1168
Query: 281 EEGKTVSRDKEGTSVDSSTIHWTCASSSTLVN 312
+ G T D + DSS IH+ A+ S L++
Sbjct: 1169 KHGSTPPGDNKDVE-DSSVIHYDDAAISKLLD 1199
Score = 42 (19.8 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 680 KERIEDSNSGDNQENNE 696
KE IE +GD +E+ E
Sbjct: 1603 KEPIETQQNGDKEEDEE 1619
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 247 DLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIH 301
+ Q+ + E DE KK+ R + G E T+ +++E +V S I+
Sbjct: 1607 ETQQNGDKEEDEEGKKEDRNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIY 1661
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 175 (66.7 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1013 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1072
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1073 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1110
Score = 51 (23.0 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 44/172 (25%), Positives = 76/172 (44%)
Query: 538 EKFK-ELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK--SWLQI-QLSNKPSS--N 591
E FK E+ + + ++N +A KL ++ EQ++ ++L + Q N P+ N
Sbjct: 1662 EPFKSEIHKGNYLEMKNK---FLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALN 1718
Query: 592 EYGHSVECLQAVEQHNAHENLENNA-SNSI-HISAGQNHDKLINIITPVSGEGRLESPVI 649
VECL QH + E+L N +N++ H Q + L ++ V+ RL S +
Sbjct: 1719 ARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVT---RLPSMLS 1775
Query: 650 Q-ETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLNP 700
+ VA L+++ +I S + AG I+ G +Q N P
Sbjct: 1776 RIPPVAARLQMSER-----SILSRLTNRAG-DPTIQQGAFGSSQMYNNNFGP 1821
Score = 42 (19.8 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 247 DLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIH 301
+ Q+ + E DE KK+ ++ + G E T+ +++E +V S I+
Sbjct: 1571 ETQQNGDKEEDEEGKKEDKIGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIY 1625
Score = 41 (19.5 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 276 LKPGLEEGKTVSRDKEGTSVD---SSTIHWTCASSSTLVN 312
LK G EE D EG + D SS IH+ A+ S L++
Sbjct: 1139 LKFGTEE--LFKDDVEGDNKDVEDSSVIHYDDAAISKLLD 1176
Score = 41 (19.5 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 680 KERIEDSNSGDNQENNE 696
KE +E +GD +E+ E
Sbjct: 1567 KEPVETQQNGDKEEDEE 1583
>UNIPROTKB|F6T542 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AL031847
EMBL:AL035406 UniGene:Hs.522898 HGNC:HGNC:16816 IPI:IPI00445286
Ensembl:ENST00000377999 UCSC:uc001alz.2 HOGENOM:HOG000139711
HOVERGEN:HBG058712 Uniprot:F6T542
Length = 110
Score = 135 (52.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 16 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 75
Query: 89 DLR 91
D++
Sbjct: 76 DIQ 78
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 156 (60.0 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 36/94 (38%), Positives = 58/94 (61%)
Query: 31 ERVDG--NVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
ER +G + +++ A++ FN S RF+F+L TRA I L+S VI++ SDW+P
Sbjct: 543 ERENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 602
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 603 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 63 (27.2 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 1009 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 1065
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 1066 KDVKKVK 1072
Score = 41 (19.5 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 842 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 899
Query: 211 ERPHIFW 217
E +FW
Sbjct: 900 EYSAVFW 906
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 1008 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 1066
Score = 39 (18.8 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 1005 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 1052
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 186 (70.5 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 42/103 (40%), Positives = 62/103 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ ++ AL +FN GS F FLL TRA I L++ VIIF SDW+P N
Sbjct: 879 FQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQN 938
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
DL+A R Q Q+ ++RL + +VEE+++ AKQ D
Sbjct: 939 DLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLD 981
Score = 44 (20.5 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 236 QGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLE-EGKTVSRDKEGTS 294
+G RK + DD ++ E+E D +R+ A+N N+ G +GK + D G S
Sbjct: 1105 EGFRKAI---DDQERAKEME-DLYLPPRRKTAAN-QNEGKRGAGKGGKGKQQADDSGGDS 1159
Score = 37 (18.1 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 763 VAETVSSNDDLENVVPVNAPISK 785
VAE+ +S D P NAP ++
Sbjct: 1436 VAESSNSQVDPSTASPHNAPATE 1458
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 165 (63.1 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1120 YERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1179
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1180 DLQAQARCHRIGQSKAVKIYRLITRNSYEREM 1211
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 162 (62.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SY R+DG ++ A + FNN FVF+L T+ L+ + VIIF DW+P N
Sbjct: 769 SYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSN 828
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D++A +R Q + + V+RL + T+EEKV
Sbjct: 829 DMQARERAWRIGQKKDVTVYRLITRGTIEEKV 860
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 165 (63.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 76/260 (29%), Positives = 112/260 (43%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF FVFLL TRA + L++ VI SD++P N
Sbjct: 390 SYERVDGSVRGEERHLAIKNFGQ-QPVFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQN 448
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA--KQDKTPDGYAQNMRPMAKFQPL 146
DL+A R Q + +KV RL TVEE V A K T + +P
Sbjct: 449 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNAIIEGGHFTLGAQKPA 508
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKV 205
A L+++++ +L+ G D IL + G + + E V
Sbjct: 509 ADADL----QLSEILKFGLDKLLSSQGSTMDEIDLERILG-ETKNGQWISDALATTEGGV 563
Query: 206 EGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRR 265
+E + H++ L EGK Y S+ R+ + +LQK E ++ R
Sbjct: 564 REQEEGKNHMY---LFEGKD----YSKEPSKEDRESFEQLVNLQKT----FLEKTTQEGR 612
Query: 266 VASNCVNQSSLKPGLEEGKT 285
+ N N L PGL E T
Sbjct: 613 LLRNKGNV--LLPGLSEEST 630
Score = 46 (21.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQK 502
+KK Q+ AK R + +EEKK ++ E +K
Sbjct: 645 RKKRQEAAAK-RKRLMEEKKRKKEKVEHEK 673
Score = 39 (18.8 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 490 EKKDIDKRYEEQKAQLETKKRTEAAVIRY 518
E +D++ + +E AQL+ + ++ I+Y
Sbjct: 694 EPEDLEDQEDESSAQLDYED-PDSTAIKY 721
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 155 (59.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 42 KKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDP 100
KK A++ FN S +F+F+L TRA I L+S VI++ SDW+P DL+A+ R
Sbjct: 558 KKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 617
Query: 101 QLEQIKVFRLYSFCTVEEKVL 121
Q + ++VFRL + TVEE+++
Sbjct: 618 QKKPVRVFRLITDNTVEERIV 638
Score = 63 (27.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 1011 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 1067
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 1068 KDVKKVK 1074
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 844 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 901
Query: 211 ERPHIFW 217
E +FW
Sbjct: 902 EYSAVFW 908
Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 1010 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 1068
Score = 39 (18.8 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 1007 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 1054
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 165 (63.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1333 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1392
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1393 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1424
Score = 61 (26.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 28/89 (31%), Positives = 35/89 (39%)
Query: 819 MDSPPGEEQIATVAISAV-PNEEAPLRVPKNVNSSHGLENAISLNPLSKEQIPDGATSCI 877
M PPG AT A P PL +P GL N L L + AT
Sbjct: 2773 MGFPPGLATAATAGGDAKNPAAVLPLMLP----GMAGLPNVFGLGGLLNNPL-SAATGNT 2827
Query: 878 PSAEVLLKVPESSPGEIVESGNINGDKNE 906
+A + PE S + E GN N D+N+
Sbjct: 2828 TTASSQGE-PEDSTSKGEEKGNENEDENK 2855
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 249 QKKPELEIDEVAKKQRRVASNC-VNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASS 307
++K E+E + AK++ + + +S + + K V K SST +++ SS
Sbjct: 2404 RRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSLSS 2463
Query: 308 STLVNN 313
++ N
Sbjct: 2464 KFILPN 2469
Score = 47 (21.6 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 847 KNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVL-LKVPESSPGEIVESGN 899
KN + G N SLNPL+ + I SA + +V E + G++ E N
Sbjct: 2129 KNFAQNRGAGNTSSLNPLAVGFVQ--TPPVISSAHIQDERVLEQAEGKVEEPEN 2180
Score = 42 (19.8 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 642 GRLESPVIQETVAGPLRLNN---GGDKLDTI-ASAEASIA----GLKERIEDSNSGDNQE 693
G E + GP + G D +++ +AE+S+ E ++ + GD E
Sbjct: 2932 GSSEEKAADKAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIE 2991
Query: 694 NNE 696
NNE
Sbjct: 2992 NNE 2994
Score = 40 (19.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 899 NINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNIIEERPVPSN 946
+I D +F +NF N S NPL V ++ PV S+
Sbjct: 2115 HILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAV---GFVQTPPVISS 2159
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 1467 GAYGALMDEEDEGSKFCEE 1485
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 183 (69.5 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 37/98 (37%), Positives = 61/98 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN +G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1099 YERIDGGITGALRQEAIDRFNAHGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1158
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1159 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1196
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1772 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1829
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1830 RFAEAECLAESHQHLSKESLAGNKPANAV 1858
Score = 40 (19.1 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSRE 320
LK G EE + E DSS IH+ + + L++ + + +
Sbjct: 1225 LKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATED 1269
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 644 LESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIE 684
LE + P + + G+K++T A + L ER+E
Sbjct: 1567 LEKDEAENQEEKPEKNSRIGEKMETEADTPSPAPSLGERLE 1607
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 782 PISKDQIPD-GATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVP 837
P + +IP A M + +L R+ + ++ T F P A SA P
Sbjct: 1881 PATLSRIPPIAARLQMSERSILSRLASKGTETHPTPAFPPGPYATPPGYGAAFSAAP 1937
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1259 LLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1301
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 149 (57.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ +++A ++ FN F F+L TR+ + L+ V+ + SDW+P D
Sbjct: 2074 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMD 2133
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128
+A R Q + ++RL S TVEE +L A Q +
Sbjct: 2134 AQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKR 2172
Score = 64 (27.6 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 46/193 (23%), Positives = 70/193 (36%)
Query: 735 NCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAP-ISKDQIPDGA- 792
N LLPV + + + + P P E S DD E VP + ++ +P G
Sbjct: 2546 NDLLPV--AVDVLPESEKNLPLIPAPSSTLEAESIPDDQEQEVPGSVEGTNRTLLPGGGE 2603
Query: 793 -TTSMPDGEVLLRVPEAASSS--NCTENFMDSPPGEEQIATVAISAVPNE--EAPLRVPK 847
T S+ + L P AAS E + E V+ S P E A + P
Sbjct: 2604 LTVSLSESNGLELPPSAASDEPLQLLETHRNLEDTREVQTPVSNSEKPQELVRAEVTAPS 2663
Query: 848 NVNSSHGL-ENAISLNPLSKEQIPD--------GATSCIPSAEVLLKVPESSPGEIVESG 898
+S+ E + P + D G T P +VL K+P + E
Sbjct: 2664 TSSSATSSPEGPLPARPPRRRTSADVEIRGQGSGRTGQPPGPKVLRKLPGRLVTVVEEKE 2723
Query: 899 NINGDKNEAFATT 911
+ ++ A A+T
Sbjct: 2724 LVKRRRHRATAST 2736
Score = 61 (26.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 21/110 (19%), Positives = 50/110 (45%)
Query: 417 YVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKC 476
Y L+ E E+S +++ + + ++ ++ ++E+F++ Q++ G + C
Sbjct: 2305 YAMKFLEASLE--EVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEEEEGPGAGDEMSC 2362
Query: 477 QKQ-MAKLRHKQLEEKKDIDKRYEEQK--AQLETKKRTEAAVIRYH--CN 521
++ R K+++ + + R E+ A+ ET+ V H CN
Sbjct: 2363 ATSGVSHRRSKKVKAPERLGTRVSERLRGARAETQGANHTPVTSSHQTCN 2412
Score = 58 (25.5 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 34/139 (24%), Positives = 55/139 (39%)
Query: 693 ENNEPLNPCSREQILDGATLSMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEAR 752
E N PL P L+ S+PD Q E S +G LLP GG++
Sbjct: 2560 EKNLPLIPAP-SSTLEAE--SIPDDQEQ----EVPGSVEGTNRTLLP---GGGELTVSLS 2609
Query: 753 LSPEAQVPGEVA-----ETVSSNDDLENVVPVNAPISKDQIPD-------------GATT 794
S ++P A + + ++ +LE+ V P+S + P + T
Sbjct: 2610 ESNGLELPPSAASDEPLQLLETHRNLEDTREVQTPVSNSEKPQELVRAEVTAPSTSSSAT 2669
Query: 795 SMPDGEVLLRVPEAASSSN 813
S P+G + R P +S++
Sbjct: 2670 SSPEGPLPARPPRRRTSAD 2688
Score = 50 (22.7 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 38/148 (25%), Positives = 55/148 (37%)
Query: 722 GVTETISS-SDGAGNCLLPVHSSGGKICDEAR--LSPEAQVPGEV--AETVSSNDDLENV 776
GV E SS S G N + P+ A L P+ P V E + + +E
Sbjct: 2836 GVDEAPSSISKGKTNGVDPIPGPETVTATAAEPDLKPQPLAPQPVHKPEPIILSP-VEKR 2894
Query: 777 VPVNAPISKDQIPDGATTSMP-DGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISA 835
P ++D +P T S P DG + R + T + TV IS
Sbjct: 2895 RRGRPPKARD-LPIPGTISSPGDGNLESRTQPLPFPATLTPLLACPTAVANTVTTVTIST 2953
Query: 836 VPNEEAPLRVPKNVNSSHGLENAISLNP 863
P + R PKN S ++ + L+P
Sbjct: 2954 SPPKRKRGRPPKNPPSPRPSQHPV-LDP 2980
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 163 (62.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 64/229 (27%), Positives = 103/229 (44%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ ++ L+ FN S F+FLL TRA + L + +IIF SDW+P
Sbjct: 738 YLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQM 797
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
D +A R Q ++++VF L S ++EE +L AKQ D AK ++Q
Sbjct: 798 DQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGID---------AK---VIQ 845
Query: 149 ATFFEQTLL----NDVVQEFSTILTQN-GEDNDTRKFNIILKVKQSQGTYSTSFPLFGES 203
A F T ++++E + T + GED + + ++ + F +F +
Sbjct: 846 AGLFNTTSTAQDRREMLEEIMSKGTSSLGEDVPSER-----EINRLAARTEEEFWMFEQM 900
Query: 204 KVEGMDEERPHIFWTNLLEGKH-PCWKYYSGSSQGSRKRVQYFDDLQKK 251
E +E + T L+E K P W Y S + + +F L K
Sbjct: 901 DEERRKKEN---YKTRLMEEKEVPEWAYTSETQEDKTNAKNHFGSLTGK 946
Score = 49 (22.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 658 RLNNGGDKLDTIASA--EASIAGLKERIEDSNSGDNQENNEPLN 699
R++NG K + + S E +ER E+S +EN +PL+
Sbjct: 989 RMSNGS-KAEAVLSESDEEKEEEEEERKEESGKESEEENEKPLH 1031
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 452 SHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRT 511
S ++ KV+QK + K A L EEK++ ++ +E+ + E+++
Sbjct: 969 SEDEDASKVSQKRKRTDTKTRMSNGSKAEAVLSESD-EEKEEEEEERKEESGK-ESEEEN 1026
Query: 512 EAAVIRYHCNGK 523
E + + N K
Sbjct: 1027 EKPLHSWKTNKK 1038
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 174 (66.3 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 42/105 (40%), Positives = 65/105 (61%)
Query: 23 QRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFH 81
+RF S +R+DG++ +K AL ++N GS F FLL TRA I L++ VIIF
Sbjct: 750 RRFPS---QRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFD 806
Query: 82 SDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
SDW+P NDL+A+ R Q + + ++RL + +VEE+++ AK+
Sbjct: 807 SDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKR 851
Score = 47 (21.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 526 MDKLKVLEN--EYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQ 583
M KLK + A++ K L R D LENLE L +KK K + + + ++L I
Sbjct: 1310 MKKLKEAQEAKNQADEAKYLTRLGDSFLENLETL----IKK---KPKTNIRKWYNYLWIF 1362
Query: 584 LSNKPSSNEYGHSVECLQAV--EQHNAHENLENNASNSIHISAGQNH 628
L K + E G + +++ ++H H + ++ S ++H
Sbjct: 1363 LC-KFTLREPGEMADRYRSITSDKHKNHHHHHHHKSKEEKPKEAKDH 1408
Score = 41 (19.5 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 15/85 (17%), Positives = 38/85 (44%)
Query: 445 LSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLE--------EKKDIDK 496
L++ E ++ EL + + + + + + + C+K + + EKKDI++
Sbjct: 1044 LNRLEEIAQDAELEEHSTDEMKKLVESLSEACKKAADEFDSNEKNGDAGAAESEKKDIER 1103
Query: 497 RYEEQKAQLETKK--RTEAAVIRYH 519
+++ + K+ R+ A + H
Sbjct: 1104 KFKFHTCDVNLKQIERSHAELKPLH 1128
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 180 (68.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 70/256 (27%), Positives = 116/256 (45%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+ER+DGNV ++AA+ F+ S RFVFLL TRA I L++ VIIF SDW+P N
Sbjct: 1564 FERIDGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQN 1623
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD-GYAQNMRPMAKFQPLV 147
DL+A R Q + +KV+RL + T E ++ A D Q+ + +
Sbjct: 1624 DLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGTAL 1683
Query: 148 QATFFEQTL----LNDVVQEFSTILTQNGEDNDT----RKFNIILKVKQSQGTYSTSFPL 199
E+ L ++ E + N ED +T R I L+ Q ++ +
Sbjct: 1684 SKKDVEELLKKGAYGSIMDEENESSKFNEEDIETILQRRTQTITLEAGQKGSLFAKATFN 1743
Query: 200 FGESKVEGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGS-------RKRVQYFDDLQKKP 252
+K + +D + P FWT E + + + G RKR + F++ + +
Sbjct: 1744 SSHNKGDDIDIDDPE-FWTKWAEKAQVDVEKATATPDGRELIIEEPRKRTKRFEENKDEG 1802
Query: 253 ELEIDEVAKKQRRVAS 268
+ + E + ++R A+
Sbjct: 1803 DSDGSEESGNRKRGAA 1818
Score = 43 (20.2 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 26/115 (22%), Positives = 45/115 (39%)
Query: 746 KICDEARLSP-EAQVPGEVAETV----SSNDDLENVVPVNAPISKDQ---IPDGATTSMP 797
+ICD+ L A V + A T S L ++ + A I + + D T +
Sbjct: 2209 EICDQCGLDQLAANVLNKPAFTKIVRPSETTLLRRLLEIVATIESGKWCGVADVETVNDS 2268
Query: 798 DGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVPKNVNSS 852
D E + A++ ++Q A VA S+ + +A + P N N +
Sbjct: 2269 DSEDKKDMAAVAAAQAQFLRLQQQQQQQQQAAAVAASSSASRKASRKRPNNDNDA 2323
Score = 41 (19.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 607 NAHENLENNASNSIHISAGQNHDKLINIITP 637
N N+ N++ H+S G H I TP
Sbjct: 2706 NPDYNVHANSALFAHLSLGGAHSDRIGDATP 2736
Score = 40 (19.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 268 SNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSRE 320
+N + +++ + T + K+ ++ S+ AS+ T + P TS +
Sbjct: 2851 ANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQ 2903
Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 26/145 (17%), Positives = 57/145 (39%)
Query: 488 LEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDR 547
+EE + KR+EE K + ++ E+ + K + + + +Y+ ++ E
Sbjct: 1785 IEEPRKRTKRFEENKDEGDSDGSEESGNRKRGAAEKRKRRRGNDEDGDYSGSYRPDE--- 1841
Query: 548 DVRLENLEALHVASMKKLSDKQTS-WVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQH 606
L +A + K L+ W E +K + ++++S + E+ L + +
Sbjct: 1842 ---LATSKAEYFKVEKVLAQYGWGRWAE-IKKYGELEISEQDI--EHMSRTLLLHCIREF 1895
Query: 607 NAHENLENNASNSIHISAGQNHDKL 631
+ + N I Q + KL
Sbjct: 1896 RGDDRIRQFVFNLIRPQGIQENQKL 1920
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 169 (64.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+Y+R+DG + + ++ A++++N S F F+L TRA I L + VI+F SDW+P
Sbjct: 798 TYQRLDGTIPSASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQ 857
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAK 125
DL+A+ R Q + + V+RL S TVEE+V+ A+
Sbjct: 858 ADLQAMARAHRIGQTKPVSVYRLVSKDTVEEEVIERAR 895
Score = 46 (21.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 512 EAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLE 555
E VIR + D +K E +K EL R+ RLE LE
Sbjct: 1109 EEEVIREARLTERDRDTVKSALREITDKAAELVREDVARLEALE 1152
Score = 43 (20.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 663 GDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLNP 700
GD+ DT A +A + + + GD+ E N +P
Sbjct: 1046 GDERDTRAERKAKRQARVQVSMNDDDGDDSEPNAKADP 1083
Score = 43 (20.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/83 (19%), Positives = 34/83 (40%)
Query: 467 RSIRGIQKKCQKQMAKLRHKQLE-EKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQ 525
R + G ++ + + R +++ D D E A+ + K+ R+ ++
Sbjct: 1042 RIVAGDERDTRAERKAKRQARVQVSMNDDDGDDSEPNAKADPKRPLVEKEYRHLLRAFLR 1101
Query: 526 MDKLKVLENEYAEKFKELERDRD 548
++ E E + + ERDRD
Sbjct: 1102 YGDIEDREEEVIREARLTERDRD 1124
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 162 (62.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 39/103 (37%), Positives = 57/103 (55%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSD 83
F Y R+DG+ ++ A+ +N S +FVFLL TRA I L + VI+F SD
Sbjct: 528 FRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSD 587
Query: 84 WSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
W+P DL+A+ R Q +Q+ V+R + +EEKV+ A Q
Sbjct: 588 WNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQ 630
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 30/137 (21%), Positives = 54/137 (39%)
Query: 419 YSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
YS+ KE+ K SK + ++ V H Q+ F+ F + + +Q+K Q
Sbjct: 753 YSVDDYYKEIIGGGSKSASKQTPQPKAPRAPKVIHGQD-FQF----FPKELDALQEKEQL 807
Query: 479 QMAK-LRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYA 537
K + +K D R E A+ E + AA H G ++ + E E
Sbjct: 808 YFKKKVNYKVTSYDITGDIRNEGSDAEEEEGEYKNAANTEGH-KGHEELKRRIEEEQEKI 866
Query: 538 EKFKELERDRDVRLENL 554
+ ++ ++R + L
Sbjct: 867 NSAPDFTQEDELRKQEL 883
Score = 43 (20.2 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 195 TSFPLFGESKVEGMDEERPHIFWTNLL--EGKHPCWKYYSGSSQGSRKRVQYFDDLQKKP 252
TS+ + G+ + EG D E + N EG H + + ++++ D ++
Sbjct: 818 TSYDITGDIRNEGSDAEEEEGEYKNAANTEG-HKGHEELKRRIEEEQEKINSAPDFTQED 876
Query: 253 ELEIDEVAKK 262
EL E+ K
Sbjct: 877 ELRKQELISK 886
Score = 37 (18.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 24/118 (20%), Positives = 48/118 (40%)
Query: 112 SFCTVEEKVLILA------KQDKTPDGYAQN--MRPMAKFQPLVQA-TFFE-----QTLL 157
++ T+E+K L+LA + DK + Q M + F ++ T E TLL
Sbjct: 993 TYNTLEDKFLLLAVNKYGLRADKLYEKLKQEIMMSDLFTFDWFIKTRTVHELSKRVHTLL 1052
Query: 158 NDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGMDEERPHI 215
+V+E+ + + T + Q++ T +++ P + V + H+
Sbjct: 1053 TLIVREYEQPDANKKKRSRTSATREDTPLSQNESTRASTVPNLPTTMVTNQKDTNDHV 1110
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 165 (63.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F N + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1143 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1202
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1203 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1240
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 21/94 (22%), Positives = 50/94 (53%)
Query: 421 LLQCLKEVFELSMKDVS--KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
+LQ KE E+ +S ++ + L E+VS + ++ +K +R +K+ Q+
Sbjct: 1234 ILQRAKEKSEIQRMVISGGNFKPDT-LKPKEVVSLLLDDEELEKK---LRLRQEEKRQQE 1289
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
+ +++ ++ + +K +K+ +E +L+ K+R E
Sbjct: 1290 ETNRVKERKRKREKYAEKKKKED--ELDGKRRKE 1321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 239 RKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK-TVSRDKEGTSVDS 297
RKR +Y + +KK E DE+ K+R+ N V P + + D SVDS
Sbjct: 1299 RKREKYAE--KKKKE---DELDGKRRKEGVNLV--IPFVPSADNSNLSADGDDSFISVDS 1351
Query: 298 S 298
+
Sbjct: 1352 A 1352
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 165 (63.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F N + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1147 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1206
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1207 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1244
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 21/94 (22%), Positives = 50/94 (53%)
Query: 421 LLQCLKEVFELSMKDVS--KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
+LQ KE E+ +S ++ + L E+VS + ++ +K +R +K+ Q+
Sbjct: 1238 ILQRAKEKSEIQRMVISGGNFKPDT-LKPKEVVSLLLDDEELEKK---LRLRQEEKRQQE 1293
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
+ +++ ++ + +K +K+ +E +L+ K+R E
Sbjct: 1294 ETNRVKERKRKREKYAEKKKKED--ELDGKRRKE 1325
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 239 RKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK-TVSRDKEGTSVDS 297
RKR +Y + +KK E DE+ K+R+ N V P + + D SVDS
Sbjct: 1303 RKREKYAE--KKKKE---DELDGKRRKEGVNLV--IPFVPSADNSNLSADGDDSFISVDS 1355
Query: 298 S 298
+
Sbjct: 1356 A 1356
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 165 (63.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F N + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1153 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1212
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1213 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1250
Score = 50 (22.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/94 (22%), Positives = 50/94 (53%)
Query: 421 LLQCLKEVFELSMKDVS--KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
+LQ KE E+ +S ++ + L E+VS + ++ +K +R +K+ Q+
Sbjct: 1244 ILQRAKEKSEIQRMVISGGNFKPDT-LKPKEVVSLLLDDEELEKK---LRLRQEEKRQQE 1299
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
+ +++ ++ + +K +K+ +E +L+ K+R E
Sbjct: 1300 ETNRVKERKRKREKYAEKKKKED--ELDGKRRKE 1331
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 239 RKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK-TVSRDKEGTSVDS 297
RKR +Y + +KK E DE+ K+R+ N V P + + D SVDS
Sbjct: 1309 RKREKYAE--KKKKE---DELDGKRRKEGINLV--IPFVPSADNSNLSADGDDSFISVDS 1361
Query: 298 S 298
+
Sbjct: 1362 A 1362
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 180 (68.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1101 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1160
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1161 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1198
Score = 50 (22.7 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1772 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1829
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1830 RFAEAECLAESHQHLSKESLAGNKPANAV 1858
Score = 49 (22.3 bits), Expect = 4.8e-07, Sum P(4) = 4.8e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 644 LESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIE 684
LE ++ P + N G+K++T A A + L ER+E
Sbjct: 1569 LEKDEVENQEEKPEK-NRTGEKIETEADAPSPAPSLGERLE 1608
Score = 45 (20.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 40/174 (22%), Positives = 62/174 (35%)
Query: 737 LLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSM 796
L+P S+ K A SP P E ++N + AP K DG+ T +
Sbjct: 1515 LMPDPSADSKRSSRAS-SPTKTSP-TTPEASATNSPCTSKPATPAPSEKG---DGSRTPL 1569
Query: 797 PDGEVLLRV--PEAASSSNCTENFMDSP-PGE---EQIATVAISAVPNEEAPLRVPKNVN 850
EV + PE + E D+P P E++ IS EE P VP +
Sbjct: 1570 EKDEVENQEEKPEKNRTGEKIETEADAPSPAPSLGERLEPRKISL--EEEVP-GVPGEME 1626
Query: 851 SSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNINGDK 904
G + G + E + PE G++ + ++ GD+
Sbjct: 1627 PEPGYRGDREKSATESTPGERGEEKPLDGQEHRER-PEGETGDLGKREDVKGDR 1679
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSRE 320
LK G EE + E DSS IH+ + + L++ + + +
Sbjct: 1227 LKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATED 1271
Score = 38 (18.4 bits), Expect = 6.0e-07, Sum P(4) = 6.0e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1261 LLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1303
Score = 37 (18.1 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 782 PISKDQIPD-GATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVP 837
P + +IP A M + +L R+ + + T F P A SA P
Sbjct: 1881 PATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFPPGPYATPPGYGAAFSAAP 1937
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 173 (66.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+ FN GS F+FLL TRA + L + V+IF SDW+P
Sbjct: 1095 YLRLDGTTKSEDRAMLLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1154
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1155 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1202
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDN 175
A F+Q + + F + ++ E N
Sbjct: 1203 AGMFDQKSSSHERRAFLQAILEHEEQN 1229
Score = 41 (19.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 645 ESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNE 696
ES ++V ++L+ ++ S K + D +S ++QE+NE
Sbjct: 1507 ESEEESKSVKVKIKLSKRDERGQDKGKRRPSRGKAKPVVSDDDSDEDQEDNE 1558
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 157 (60.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FNN S FVF+L ++A + L + +++F DW+P N
Sbjct: 541 YVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 600
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 601 DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI 632
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 154 (59.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 31/93 (33%), Positives = 58/93 (62%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++ R+DG++ S+++ + +FN F+FL+ TRA I L++ VII+ SDW+P +
Sbjct: 78 NFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQS 137
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A R Q + + V+RL + T+++K++
Sbjct: 138 DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 170
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 387 SLRKQKIDHKESLELAKKHLHFSCKKGEADYVYS 420
+L K +D KE +EL K + KG + V S
Sbjct: 197 NLSKNFLDPKELMELLKSRDYEREIKGSREKVIS 230
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 163 (62.4 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 824 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 883
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 884 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 916
Score = 53 (23.7 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 248 LQKKPELEIDEVAKKQRRVAS---NCVNQSSLKPGLEEG 283
L K+ EL E + R+ NC SL PG E G
Sbjct: 1787 LSKEGELGCSEAGPRPERIGQLDPNCFASPSLDPGNESG 1825
Score = 53 (23.7 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 31/134 (23%), Positives = 53/134 (39%)
Query: 449 EIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKR-------YEEQ 501
E++ +QEL K K+ + +G+ + K E K+++DK Y +
Sbjct: 1991 ELLQVKQELLKEPWKESTEGNQGLPPYPEGSELKPEDMDYESKEELDKDGNCQSQDYPGK 2050
Query: 502 KAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK----FKELERDRDV--RLENLE 555
++ E+K T I +Q + + EK F E +DR + RL+N+
Sbjct: 2051 YSEEESKSSTSG--ITGDLGDDLQEARAPTIAQLLQEKTLYSFSEWPKDRVIISRLDNI- 2107
Query: 556 ALHVASMKKLSDKQ 569
HV K Q
Sbjct: 2108 -CHVVLKGKWPSSQ 2120
Score = 53 (23.7 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 21/93 (22%), Positives = 39/93 (41%)
Query: 544 ERDRDVRLENLE-ALHVASMKKLSDKQTSWVEQVKSWLQIQLSNK--PSS-----NEYGH 595
+ DRD+ + + L+ ++D Q S+++ +++ Q + + P S
Sbjct: 1578 KHDRDLLIGTAKHGLNRTDYYVMTDPQLSFLDAYRNYAQHKRPDPQAPESLCCLYQTNSK 1637
Query: 596 SVECLQAVEQHNAHENLENNASNSIHISAGQNH 628
E L E+LEN N + I AG +H
Sbjct: 1638 LYESLAYTHMSRTSESLENEPENLMKIEAGDDH 1670
Score = 47 (21.6 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 848 NVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVES 897
NV + E+ +P S +Q T+ P A +P SPG I S
Sbjct: 2581 NVKTDPSAEDKPGPSPFSSDQPEPAITTSSPVAFNPFLIPGVSPGLIYPS 2630
Score = 45 (20.9 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 30/119 (25%), Positives = 48/119 (40%)
Query: 818 FMDSPPGEEQIATVAI--SAVPNEEAPLRVPKNVNSSHGLENAISLNPLSKEQIPDGATS 875
F PPGEE +T+++ +P A VP+ L ++ S P +T+
Sbjct: 2506 FAAMPPGEEVKSTLSMLPMVLPGMAA---VPQMFGVGGLLNTPMATTCASAVPAPLSSTT 2562
Query: 876 C--IPSAEVLLKVPESSPGEIVESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPV 932
+ +AE K E PG S N+ D + F+ + P E ++T PV
Sbjct: 2563 KGGVSAAE---KTAEDQPG----SHNVKTDPSAEDKPGPSPFSSDQP--EPAITTSSPV 2612
Score = 44 (20.5 bits), Expect = 1.8e-06, Sum P(5) = 1.8e-06
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 722 GVTETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNA 781
G+ T ++ A P+ S+ A + E Q PG + V ++ E+ P +
Sbjct: 2540 GLLNTPMATTCASAVPAPLSSTTKGGVSAAEKTAEDQ-PG--SHNVKTDPSAEDK-PGPS 2595
Query: 782 PISKDQIPDGATTSMP 797
P S DQ TTS P
Sbjct: 2596 PFSSDQPEPAITTSSP 2611
Score = 40 (19.1 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 922 HERSLTNPLPVLTQN 936
HE S T P PVLT +
Sbjct: 2122 HEPSGTLPTPVLTSS 2136
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(5) = 1.8e-06
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 807 EAASSSNCTENFMDSPPGEEQIA 829
E S +C E +PP E A
Sbjct: 2683 EPGSEQSCPEPRAPAPPDREHAA 2705
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 958 GAYGALMDEEDEGSKFCEE 976
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 175 (66.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 983 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1042
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1043 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1080
Score = 46 (21.3 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 664 DKLDTIASAEASIAGLKERIEDSNSGDNQENNE 696
DKL+T + + A KE IE +GD +E+ E
Sbjct: 1535 DKLET----DDTKAEEKEPIETQQNGDKEEDEE 1563
Score = 41 (19.5 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 276 LKPGLEEGKTVSRDKEGTSVD---SSTIHWTCASSSTLVN 312
LK G EE D EG + D SS IH+ A+ S L++
Sbjct: 1109 LKFGTEE--LFKDDVEGDNKDVEDSSVIHYDDAAISKLLD 1146
Score = 39 (18.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 247 DLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIH 301
+ Q+ + E DE KK+ R + G E T+ +++E +V S I+
Sbjct: 1551 ETQQNGDKEEDEEGKKEDRNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIY 1605
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 157 (60.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 32/97 (32%), Positives = 60/97 (61%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
F + ++ R+DG++ S+++ + +FN F+FL+ TRA I L++ VII+ SDW
Sbjct: 638 FRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDW 697
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+P +DL+A R Q + + V+RL + T+++K++
Sbjct: 698 NPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 734
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 157 (60.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 34/102 (33%), Positives = 61/102 (59%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
SY R+DGN S+++ + +FN+ S F+FLL ++A + L +I++ DW+P
Sbjct: 693 SYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPA 752
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQD 127
D++A+ R+ D Q + ++RL + T+EEK+ ++KQD
Sbjct: 753 TDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQD 794
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 157 (60.3 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 34/102 (33%), Positives = 61/102 (59%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
SY R+DGN S+++ + +FN+ S F+FLL ++A + L +I++ DW+P
Sbjct: 695 SYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPA 754
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQD 127
D++A+ R+ D Q + ++RL + T+EEK+ ++KQD
Sbjct: 755 TDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQD 796
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 180 (68.4 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1059 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1118
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1119 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1156
Score = 50 (22.7 bits), Expect = 4.1e-07, Sum P(4) = 4.1e-07
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1697 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1754
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1755 RFAEAECLAESHQHLSKESLAGNKPANAV 1783
Score = 44 (20.5 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 739 PVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSM 796
P S+ C +P G+ T+ DD EN P P ++ + T +
Sbjct: 1498 PEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTEN--PEEKPEKSSKVGEKMETEI 1553
Score = 39 (18.8 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHW 302
LK G EE + E DSS IH+
Sbjct: 1185 LKFGTEELFKDENEGENKEEDSSVIHY 1211
Score = 38 (18.4 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1219 LLDRNQDATDDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1261
Score = 37 (18.1 bits), Expect = 4.1e-07, Sum P(4) = 4.1e-07
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 782 PISKDQIPD-GATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVP 837
P + +IP A M + +L R+ + + T F P A SA P
Sbjct: 1806 PATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFPPGPYATPPGYGAAFSAAP 1862
Score = 37 (18.1 bits), Expect = 7.4e-06, Sum P(4) = 7.4e-06
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 656 PLRLNNGGDKLDTIASAEASIAGLKERIE 684
P + + G+K++T + + L ER+E
Sbjct: 1539 PEKSSKVGEKMETEIDSPSPAPSLGERLE 1567
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 168 (64.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 75/261 (28%), Positives = 116/261 (44%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF F FLL TRA + L++ VI F SD++P N
Sbjct: 391 SYERVDGSVRGEERHLAIKNFGQ-QPIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQN 449
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA--KQDKTPDGYAQNMRPMAKFQPL 146
DL+A R Q + +KV RL TVEE V A K T + +P
Sbjct: 450 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEGGHFTLGAQKPA 509
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKV 205
A L+++++ +L+ G IL + S + P E
Sbjct: 510 ADADL----QLSEILKFGLDKLLSSEGSTMHEIDLKSILGETEDGHWVSDALPTAEEGSR 565
Query: 206 EGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRR 265
E +E + H++ L EGK Y S+ R+ + +LQK +++ +++ R
Sbjct: 566 EP-EEGKNHMY---LFEGKD----YSKEPSKEDRESFEQLVNLQKTL---LEKTSQEGRL 614
Query: 266 VASNCVNQSSLK-PGLEEGKT 285
+ N+ S+ PGL EG T
Sbjct: 615 LR----NKGSVPIPGLVEGST 631
Score = 39 (18.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQK 502
+K+ Q+ AK R + LEEK+ + E +K
Sbjct: 646 RKRRQEAAAK-RKRLLEEKRKKKEEAEHKK 674
Score = 37 (18.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 474 KKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL 505
++ ++Q A + K+L E+K K E K ++
Sbjct: 645 RRKRRQEAAAKRKRLLEEKRKKKEEAEHKKKM 676
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 156 (60.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 32/97 (32%), Positives = 59/97 (60%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
F + ++ R+DG++ S+++ + +FN F+FL+ TRA I L++ VII+ SDW
Sbjct: 615 FRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDW 674
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+P +DL+A R Q + V+RL + T+++K++
Sbjct: 675 NPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIV 711
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 129 (50.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 32 RVDGNVLDS-KKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG V +++ +Q F VFLL T+ + L++ V+IF W+P D
Sbjct: 507 RIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDA 566
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+A+ R+ Q E + V+RL + TVEEK+
Sbjct: 567 QAVDRVYRIGQKENVVVYRLITCGTVEEKI 596
Score = 82 (33.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 55/287 (19%), Positives = 115/287 (40%)
Query: 499 EEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKE-LERDRDVRLENLEAL 557
+ +AQLE KK + +Y C+ + ++ + KF E +E++ ++ +
Sbjct: 920 QAMEAQLELKKDPLESPPQYECDFNLFLEDSADTRQNLSSKFLEHVEKENSLQRPAGNSG 979
Query: 558 HVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNAS 617
S LS ++ +++ + ++ NK L + + + ++ ++
Sbjct: 980 E-ESAHNLSLDSSNKIDEESEVITVKTKNKAR--------RILS--DDEDEEDAFKDTST 1028
Query: 618 NSIHISAGQ-NHDKLINIITPVSGEG---RLESPVIQETVAGPLRLNNG-GDKLDTIASA 672
NS +S + K + TP + R SP I + V L + I
Sbjct: 1029 NSFSVSPLTFSSVKHFDASTPQNDSNPSRRFFSPKIPDDVNTSLHPRRSLASRRSLINVV 1088
Query: 673 EASIAGLKERIEDSNSGDNQ-----ENNEPLNPCSREQILDGATLSMPDGHIQLGVTETI 727
+ ++ER++ S+ +++ ++NE C+ EQ GATL+ + H L +E
Sbjct: 1089 LDDMEDMEERLDTSSEEESEPELSEDSNEEAVACTEEQ-RSGATLASGNKHSSLTESEPT 1147
Query: 728 SSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLE 774
S + + C P SS + D + P + + V+ +L+
Sbjct: 1148 SPAPQSSPCA-PEPSSSDPLLDPPQ-DPAVEAANDYESLVARGKELK 1192
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 151 (58.2 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 42 KKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDP 100
++ A++ FN S RF+F+L TRA I L+S VI++ SDW+P DL+A+ R
Sbjct: 556 QREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 615
Query: 101 QLEQIKVFRLYSFCTVEEKVL 121
Q + ++VFRL + TVEE+++
Sbjct: 616 QKKPVRVFRLITDNTVEERIV 636
Score = 63 (27.2 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 1009 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 1065
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 1066 KDVKKVK 1072
Score = 41 (19.5 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 842 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 899
Query: 211 ERPHIFW 217
E +FW
Sbjct: 900 EYSAVFW 906
Score = 40 (19.1 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 1008 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 1066
Score = 39 (18.8 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 1005 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 1052
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 180 (68.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1154 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1213
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1214 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1251
Score = 50 (22.7 bits), Expect = 5.0e-07, Sum P(4) = 5.0e-07
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1792 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1849
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1850 RFAEAECLAESHQHLSKESLAGNKPANAV 1878
Score = 44 (20.5 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 739 PVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSM 796
P S+ C +P G+ T+ DD EN P P ++ + T +
Sbjct: 1593 PEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTEN--PEEKPEKSSKVGEKMETEI 1648
Score = 39 (18.8 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHW 302
LK G EE + E DSS IH+
Sbjct: 1280 LKFGTEELFKDENEGENKEEDSSVIHY 1306
Score = 38 (18.4 bits), Expect = 6.3e-07, Sum P(4) = 6.3e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1314 LLDRNQDATDDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1356
Score = 37 (18.1 bits), Expect = 5.0e-07, Sum P(4) = 5.0e-07
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 782 PISKDQIPD-GATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVP 837
P + +IP A M + +L R+ + + T F P A SA P
Sbjct: 1901 PATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFPPGPYATPPGYGAAFSAAP 1957
Score = 37 (18.1 bits), Expect = 9.0e-06, Sum P(4) = 9.0e-06
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 656 PLRLNNGGDKLDTIASAEASIAGLKERIE 684
P + + G+K++T + + L ER+E
Sbjct: 1634 PEKSSKVGEKMETEIDSPSPAPSLGERLE 1662
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 155 (59.6 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FNN S FVF+L ++A + L + +++F DW+P N
Sbjct: 540 YVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 600 DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI 631
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 180 (68.4 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + + ++ A+ FN G+ +F FLL TRA I L++ VIIF SDW+P N
Sbjct: 1154 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1213
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1214 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1251
Score = 50 (22.7 bits), Expect = 5.4e-07, Sum P(4) = 5.4e-07
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 538 EKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYG-HS 596
E FK E ++ LE ++ +A KL ++ EQ++ + LS +P+ H+
Sbjct: 1826 EPFKT-EANKGNFLE-MKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1883
Query: 597 ----VECLQAVEQHNAHENLENNA-SNSI 620
ECL QH + E+L N +N++
Sbjct: 1884 RFAEAECLAESHQHLSKESLAGNKPANAV 1912
Score = 44 (20.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 739 PVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSM 796
P S+ C +P G+ T+ DD EN P P ++ + T +
Sbjct: 1593 PEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTEN--PEEKPEKSSKVGEKMETEI 1648
Score = 39 (18.8 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 276 LKPGLEEGKTVSRDKEGTSVDSSTIHW 302
LK G EE + E DSS IH+
Sbjct: 1280 LKFGTEELFKDENEGENKEEDSSVIHY 1306
Score = 38 (18.4 bits), Expect = 6.7e-07, Sum P(4) = 6.7e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQE 163
L+ QD T D QNM + Q E+ + ++ +E
Sbjct: 1314 LLDRNQDATDDTDVQNMNEYLSSFKVAQYVVREEDKIEEIERE 1356
Score = 37 (18.1 bits), Expect = 5.4e-07, Sum P(4) = 5.4e-07
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 782 PISKDQIPD-GATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVP 837
P + +IP A M + +L R+ + + T F P A SA P
Sbjct: 1935 PATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAFPPGPYATPPGYGAAFSAAP 1991
Score = 37 (18.1 bits), Expect = 9.7e-06, Sum P(4) = 9.7e-06
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 656 PLRLNNGGDKLDTIASAEASIAGLKERIE 684
P + + G+K++T + + L ER+E
Sbjct: 1634 PEKSSKVGEKMETEIDSPSPAPSLGERLE 1662
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 165 (63.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 58/187 (31%), Positives = 89/187 (47%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DGN ++ A+++ +N GS +FVFLL TRA I L++ VI++ SDW+P
Sbjct: 538 YCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQV 597
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCT---VEEKVLILAKQDKTPDGYAQNMRPMAKFQP 145
DL+A R Q ++++VFR FCT +E KV+ A + D +A+ Q
Sbjct: 598 DLQAQDRAHRIGQKKEVQVFR---FCTENAIEAKVIERAYKKLALDALVIQQGRLAE-QK 653
Query: 146 LVQATFFEQTLLNDVVQEFSTI-LTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESK 204
V Q + FS+ T ED D II K +++ F E
Sbjct: 654 TVNKDELLQMVRYGAEMVFSSKDSTITDEDID----RIIAKGEEATAELDAKMKKFTEDA 709
Query: 205 VE-GMDE 210
++ MD+
Sbjct: 710 IQFKMDD 716
Score = 43 (20.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAV 515
Q+ ++R+K+L + I K E +A++ K A+
Sbjct: 890 QVFQVRYKELNDYDRIIKNIERGEARISRKDEIMKAI 926
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 175 (66.7 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 999 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1058
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1059 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1096
Score = 46 (21.3 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 597 VECLQAVEQHNAHENLENNASNSIHISAGQNH-DKLIN 633
VECL QH + E+L N + + NH ++L++
Sbjct: 1744 VECLAESHQHLSKESLAGNKPANAVLHKVLNHLEELLS 1781
Score = 45 (20.9 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 488 LEEKKDIDKRYEEQKAQLETKKR 510
L EK D ++E+K Q+E K R
Sbjct: 1462 LAEKADPPLGFQEEKDQVEQKSR 1484
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 641 EGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENN 695
E LE P E+ + P G DK + AE + KE+ E +GD +E +
Sbjct: 1565 EKALEKP---ESNSSP---GKGEDK--EVKPAEDTKVEEKEQSETQQNGDKEEED 1611
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVL 532
Q+ C+ + KL+ ++ EE + I E++KA LE K + ++ + + KV
Sbjct: 1541 QENCESK-EKLKEEKQEENEGIQ---EKEKA-LE-KPESNSSPGKGEDKEVKPAEDTKVE 1594
Query: 533 ENEYAEKFKELERDRD 548
E E +E + +++ +
Sbjct: 1595 EKEQSETQQNGDKEEE 1610
Score = 40 (19.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 572 WVEQVKSW-LQIQL---SNKPSSNEYGHSVECLQAVEQHNAHEN---------LENNASN 618
W V W L I++ + K S EY + E + +++ EN LE SN
Sbjct: 1517 WANPV--WVLHIKVPGSTEKVESEEYQENCESKEKLKEEKQEENEGIQEKEKALEKPESN 1574
Query: 619 SIHISAGQNHDK 630
S S G+ DK
Sbjct: 1575 S---SPGKGEDK 1583
Score = 39 (18.8 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 277 KPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVN 312
K +E G + ++D + DSS IH+ A+ S L++
Sbjct: 1134 KDDVEGGVSDNKDVD----DSSVIHYDDAAISKLLD 1165
Score = 37 (18.1 bits), Expect = 2.9e-06, Sum P(4) = 2.9e-06
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 884 LKVPESSPGEIVESGNI--NGDKNEAFATTSENFNHNLPLHERSLTNP 929
+KVP S+ E VES N + E + N + E++L P
Sbjct: 1526 IKVPGST--EKVESEEYQENCESKEKLKEEKQEENEGIQEKEKALEKP 1571
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 168 (64.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 36/93 (38%), Positives = 57/93 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ A+ FN S +F+F+L TRA I L+S VI++ SDW+P
Sbjct: 533 YSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 592
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 593 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 625
Score = 39 (18.8 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 162 QEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDEERPHIFW 217
+E +LTQ + R FN +K + G + + + G+S E M E +FW
Sbjct: 839 EEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM--EYSAVFW 895
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 178 (67.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 42/103 (40%), Positives = 62/103 (60%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSD 83
F + Y R+DG+ + A+ ++N S +FVFLL TRA I L+S V+++ SD
Sbjct: 540 FRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSD 599
Query: 84 WSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
W+P DL+A+ R Q +Q+KVFRL + +VEEK+L A Q
Sbjct: 600 WNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQ 642
Score = 38 (18.4 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 496 KRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELE 544
+R E+ + L+ + E + R KMQ + L+ +EY F +L+
Sbjct: 935 ERIEDYEKYLKIIENEEEKIKRV----KMQQEALRRKLSEYKNPFFDLK 979
Score = 37 (18.1 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 364 HRVDREPPSMLQAFEISLCWTA 385
H +PP + +E WTA
Sbjct: 805 HSHQLQPPQLKVLYEKERMWTA 826
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 154 (59.3 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/97 (31%), Positives = 60/97 (61%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
F + ++ R+DG++ ++++ + +FN F+FL+ TRA I L++ VII+ SDW
Sbjct: 637 FRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDW 696
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+P +DL+A R Q + + V+RL + T+++K++
Sbjct: 697 NPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 733
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 154 (59.3 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 32/92 (34%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
+ R+DG++ S ++ + FNN F+FL+ TRA I L++ VII+ SDW+P +D
Sbjct: 642 FSRLDGSMSYSDREENMHQFNNDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSD 701
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
L+A R Q + + V+RL + T+++K++
Sbjct: 702 LQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 733
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 154 (59.3 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 47/153 (30%), Positives = 76/153 (49%)
Query: 32 RVDGNVLDSKKKAALQNFNNGSGRF-VFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG+V + +K L+ FN+ + +FLL TRA I L V++F SDW+P DL
Sbjct: 648 RIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDL 707
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD------GYAQNMRPMAKFQ 144
+A+ R Q + V+RL T+E +L A + + G N++ +A +
Sbjct: 708 QAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGKFNNLKKLALNE 767
Query: 145 -PLVQATFFEQTLLN-DVVQEFSTILTQNGEDN 175
++A + N D+VQE S +L + E N
Sbjct: 768 GSFLKANKAGVNVTNKDLVQELSMLLMSD-ESN 799
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 153 (58.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FN+ S F+F+L ++A + L + +++F DW+P N
Sbjct: 529 YVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 588
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 589 DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI 620
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 153 (58.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FN+ S F+F+L ++A + L + +++F DW+P N
Sbjct: 529 YVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 588
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 589 DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI 620
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 153 (58.9 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FN+ S F+F+L ++A + L + +++F DW+P N
Sbjct: 538 YVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 597
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 598 DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI 629
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 156 (60.0 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 54/177 (30%), Positives = 85/177 (48%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SY ++DG + ++ + +N + FVFLL TR + L+ + VII+ DW+P
Sbjct: 872 SYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPST 931
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQDKTPDGYAQ-NMRPMAKFQP 145
D +A +R Q +Q+ V+RL + T+EEK+ + KQ T R K
Sbjct: 932 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSND 991
Query: 146 LVQATFFEQTLLN-DVVQ--EFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPL 199
L + F TL + D Q E S I G D T K ++ +++Q+ GT S P+
Sbjct: 992 LYE--LF--TLSSPDTSQSTETSAIFAGTGSDVQTPKRHLKRRLQQACGT-DQSVPV 1043
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 153 (58.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 47/147 (31%), Positives = 72/147 (48%)
Query: 32 RVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLR 91
R+DG + + ++A ++ FN +FLL TRA I L + VI+F SDW+P DL+
Sbjct: 672 RIDGAISQADRQAQIKAFNTDKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQ 731
Query: 92 ALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQATF 151
A R Q + + V+RL + TVE+ +L A + + + + KF+ L+
Sbjct: 732 AQDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLE---RLVIQKGKFKSLLS--- 785
Query: 152 FEQTLLNDVVQEFSTILTQNGEDNDTR 178
E T+ D V E L GED R
Sbjct: 786 -ESTMSRDDVDELKRAL---GEDEFER 808
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 165 (63.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 402 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 461
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +KV+RL + + E ++
Sbjct: 462 DLQAQARCHRIGQSKAVKVYRLITRNSYEREM 493
Score = 38 (18.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 388 LRKQKIDHKESLELAKKHLHFSCKK 412
+RK D E KKHL C K
Sbjct: 786 IRKYNPDTLFQDESYKKHLKHQCNK 810
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 152 (58.6 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FN+ S FVF+L ++A + L + +++F DW+P N
Sbjct: 540 YVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 600 DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI 631
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 152 (58.6 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FN+ S FVF+L ++A + L + +++F DW+P N
Sbjct: 540 YVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 600 DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI 631
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 160 (61.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 52/185 (28%), Positives = 86/185 (46%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+Y R+DG+ ++ L FN S F+F+L TRA + L + VIIF SDW+P
Sbjct: 892 TYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPH 951
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLV 147
D++A R Q ++++V RL + +VEEK+L A+ Y N+ + ++
Sbjct: 952 QDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAAR-------YKLNVD-----EKVI 999
Query: 148 QATFFEQTLLN-DVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVE 206
QA F+Q + Q I+ +GE+ + + V Q F +F ++
Sbjct: 1000 QAGKFDQRSTGAERKQMLEQIIQADGEEEEEEEVPDDETVNQMVARSEEEFNIFQSMDID 1059
Query: 207 GMDEE 211
EE
Sbjct: 1060 RRREE 1064
Score = 48 (22.0 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 33/174 (18%), Positives = 76/174 (43%)
Query: 434 KDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKK- 492
++V N R + E V + +L ++ + F + + ++ + + +A+ R KQ + K
Sbjct: 1102 REVVDQTPNQRRRRRE-VDYSSDL--LSDEQFMKQVEEVEDENNQAVAE-RKKQRKRKMA 1157
Query: 493 DIDKRYEEQK-AQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRL 551
+D+ + L+ KK+ + N +M +D + +NE E ++ + R
Sbjct: 1158 GLDENDDSMDDVVLQHKKKKTDPELAEKIN-EM-LDVILEYKNEDGELIADVFQTLPTRK 1215
Query: 552 ENLEALHVASM--------KKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGHSV 597
E + V S KK+ + + +E++ + + ++N + NE G +
Sbjct: 1216 ELPDYYQVISKPMDFDRINKKIETGRYTVMEELNDDMNLLVNNAQTYNEEGSEI 1269
Score = 40 (19.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 358 EYLMINHRVDREPPSMLQAFEISLCWTAASLRKQKIDHKESLELAKK 404
+ LM+ + PP+ Q F+ +L + + + +S LA++
Sbjct: 1334 QMLMLMTHMQSLPPAQAQQFQQALMTQTGGNQALMLQYMQSAMLAQR 1380
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 160 (61.4 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+ER+DG + + ++ A+ ++ GS RFVFLL T+A I L++ VII+ SDW+P N
Sbjct: 2393 FERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQN 2452
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL T E ++
Sbjct: 2453 DLQAQARCHRIGQRKMVKIYRLLCRNTYEREM 2484
Score = 74 (31.1 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 53/234 (22%), Positives = 94/234 (40%)
Query: 662 GGDKLDTIASAEASIAGLKERIEDSNSGDNQENNE----PLNPCS-REQILDGATLSMPD 716
GGD D++ E + K E+++ G+++ +E ++ S + ++L G +
Sbjct: 3011 GGDNKDSLLDPERPSSSGKSSSENASGGNDKTESENDATTVSESSYKSEVLPGKGSDLDV 3070
Query: 717 GHIQ---LGVT-ETISSSDGAGNCLLPVHSSGGKICDEA-RLSPEA--QVPGEVAETVSS 769
Q L T E ++SD N S CD A SPEA + G +T +
Sbjct: 3071 SVAQQDALSATPELANTSDPKMN-KNDAQVSASVSCDPADSSSPEAAGKAQGTGVQTGDA 3129
Query: 770 ND-DLENVVPVNAPISKDQIPDG-ATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQ 827
+ D+E+ N +K+ D A + D + R E + +CT N +
Sbjct: 3130 GELDIESEKKDNEKETKESTGDAPAVEAKKDSAAIARA-EGDKTESCTNNATTNIS---- 3184
Query: 828 IATVAISAVPNEEAPLRVP--KNVNSSHGLENAISLNPLSKEQIPDGATSCIPS 879
T + + N P K NS++ ++A S + L ++ A S P+
Sbjct: 3185 -TTTTTTTITNTTTTTNNPSSKAANSNNTTDHANSNSHLGLDEEESVAGSYPPT 3237
Score = 59 (25.8 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 49/235 (20%), Positives = 94/235 (40%)
Query: 667 DTIASAEASIAGLKERIEDSNSG---DNQENNEPLNPCSREQI-LDGATLSMPDGHIQLG 722
+++ E+ + +KE I+ S D +N E N + E + G P+ +
Sbjct: 3676 ESVIKKESPVTPIKEEIKSEESPEKHDTADNLEDKNSDAEESTKIKGKEDFNPETTEKEA 3735
Query: 723 VTETIS-SSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNA 781
+ E+ + + D + L K ++ ++ E ++P VAE E
Sbjct: 3736 LDESTNLNKDKSSTETLVPEIEDSKPSED-KMEVE-ELP--VAENGEKEGSPEKCSDAED 3791
Query: 782 PISKDQIPDGATTSMPDGEVL-LRVPEAASSS--NCTENFMDSPPGEEQIATVAISAVPN 838
++ P ++ ++PDG+V + EAA ++ NC+ + +SP E++ + V
Sbjct: 3792 KKFSEEKP--SSPAVPDGKVSEMEADEAAPNTEENCSGD-SESP--EKECEDKVVEKVEE 3846
Query: 839 EEAPLRVPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGE 893
E+ K + E L S E P + + EV VP+ S G+
Sbjct: 3847 EKGENSYEK---AEEQKEETEKLEKSSIESEPSEKSETVLEPEVA--VPKKSTGD 3896
Score = 51 (23.0 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 528 KLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSWLQIQLSNK 587
KL+ E AEK E+D E A A+ +K + + ++ + + K
Sbjct: 3623 KLEAFNAEKAEKLAAAEKD--AATEKAAATEKAAAEKAASVKNEVIDLDDELMTNESVIK 3680
Query: 588 PSS--NEYGHSVECLQAVEQHNAHENLENNASNS 619
S ++ ++ E+H+ +NLE+ S++
Sbjct: 3681 KESPVTPIKEEIKSEESPEKHDTADNLEDKNSDA 3714
Score = 49 (22.3 bits), Expect = 6.0e-05, Sum P(4) = 6.0e-05
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 247 DLQKKP-ELEIDEVAK-KQRRVASNCVNQSS-LK---PGLE--EGKTVSRDK-EGTSVDS 297
DL P + + DEV K K++ V C Q++ LK P LE + TV + K E ++
Sbjct: 3901 DLVAGPSDPDDDEVMKEKEKAVEEECKKQAAELKARFPDLEVIQPATVKQQKLEKPKLEM 3960
Query: 298 STIHW 302
I W
Sbjct: 3961 CMIRW 3965
Score = 48 (22.0 bits), Expect = 6.0e-05, Sum P(4) = 6.0e-05
Identities = 33/168 (19%), Positives = 61/168 (36%)
Query: 706 ILDGATLSMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAE 765
+L+ +T++ D ++ E +S S G G G P A ++
Sbjct: 4158 LLNSSTMAPKDWESEIANMEALSGSSGRGR-------GGNSSASSGMQPPPAHQHASLSR 4210
Query: 766 TVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNCTE--NFMD-SP 822
S V + P P ++S+P + + ++ASSS + D S
Sbjct: 4211 QSSGQFSKPAVPAMKTPPPSMGAPMDLSSSLPKMN-MTEMLKSASSSGAIDLSEVQDFSM 4269
Query: 823 PGEEQIATVAIS-AVPNEEAPLRVPKNVNSSHGLENAISLNP-LSKEQ 868
P ++ A+S A P+ ++ +N N P + KE+
Sbjct: 4270 PSKKSSVHAALSSAFPSMGNKSKLDDTLNKLMKKNNCTIEEPVIGKEK 4317
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 758 QVPGEVAETVSSNDDLENVVPVNAPISKDQIP 789
+V G+ + + N + + P+ P + DQ+P
Sbjct: 2892 EVIGDFVQQIKDNTPISEL-PIRPPPTPDQVP 2922
Score = 46 (21.3 bits), Expect = 6.0e-05, Sum P(4) = 6.0e-05
Identities = 34/161 (21%), Positives = 66/161 (40%)
Query: 582 IQLSNKPSSNEYGHSVECLQAVEQHNA-HENLENNASNSIHISAGQNHDKLINIITPVSG 640
++ N P ++Y C A + A HE++ H+S+ + ++IT +
Sbjct: 3982 VESGNWPVDSKYSAFATCKGATDLSIALHESIP-------HLSSLERRSTTPDVITITTD 4034
Query: 641 EG---RLESPVIQETV--AGPLRLNNGGDKL-DTIASAEASIAGLKER-IEDSNSGDNQE 693
+G L++ +Q+ A ++G ++ + S+ S+ GL + I + +
Sbjct: 4035 QGVTKHLQTSHMQQVASSASAASTSSGVPQVTQSKPSSSNSLPGLDAKSINAAVAAAVAA 4094
Query: 694 NNEPLNPCSREQILDGATLSMPDGHIQLGVTETISSSDGAG 734
N S +L G +LS G GV+ S G+G
Sbjct: 4095 AAAGGNATSLSSLLPGMSLSAATGSSAGGVSGLSVPSAGSG 4135
Score = 45 (20.9 bits), Expect = 0.00053, Sum P(5) = 0.00053
Identities = 7/44 (15%), Positives = 26/44 (59%)
Query: 472 IQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAV 515
+ +K +++ + +++ EE+K+ ++ E+ + E +++E +
Sbjct: 3840 VVEKVEEEKGENSYEKAEEQKEETEKLEKSSIESEPSEKSETVL 3883
Score = 45 (20.9 bits), Expect = 0.00053, Sum P(5) = 0.00053
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 470 RGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRY 518
+ ++++C+KQ A+L+ + + + I +Q+ +LE K + E +IR+
Sbjct: 3920 KAVEEECKKQAAELKAR-FPDLEVIQPATVKQQ-KLE-KPKLEMCMIRW 3965
Score = 45 (20.9 bits), Expect = 0.00053, Sum P(5) = 0.00053
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 760 PGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRVPEAASSSNC 814
P E +ETV + E VP + +D + A S PD + +++ E A C
Sbjct: 3875 PSEKSETVL---EPEVAVPKKSTGDQDILDLVAGPSDPDDDEVMKEKEKAVEEEC 3926
Score = 43 (20.2 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLE 489
RQ K+++ + R + GI ++ +K+ AKL +LE
Sbjct: 3506 RQAGLKLSESE--RGLEGIIEEIEKEHAKLILDRLE 3539
Score = 40 (19.1 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 20/86 (23%), Positives = 39/86 (45%)
Query: 232 SGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVN--QSSLKPGLEEG-KTVS- 287
+G +QG+ + +L + E + +E K+ + V + S EG KT S
Sbjct: 3116 AGKAQGTGVQTGDAGELDIESEKKDNEKETKESTGDAPAVEAKKDSAAIARAEGDKTESC 3175
Query: 288 RDKEGTSVDSSTIHWTCASSSTLVNN 313
+ T++ ++T T +++T NN
Sbjct: 3176 TNNATTNISTTTTTTTITNTTTTTNN 3201
Score = 39 (18.8 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 617 SNSIHISAGQNHDKLINIITPVSGEGRLES 646
S+S ++ G N D L++ P S G+ S
Sbjct: 3004 SDSTKLTGGDNKDSLLDPERP-SSSGKSSS 3032
Score = 39 (18.8 bits), Expect = 0.00065, Sum P(5) = 0.00065
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 235 SQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGT 293
S+ S ++ D+L+ K + +E K + + N +++ K L+E +++DK T
Sbjct: 3694 SEESPEKHDTADNLEDKNS-DAEESTKIKGKEDFN--PETTEKEALDESTNLNKDKSST 3749
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 164 (62.8 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 40/98 (40%), Positives = 58/98 (59%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG V + ++ ++ +FN S FVFLL TRA I L + VIIF SDW+P
Sbjct: 733 HQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQA 792
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q + V+RL S T+EE VL A++
Sbjct: 793 DLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARR 830
Score = 43 (20.2 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 26/138 (18%), Positives = 56/138 (40%)
Query: 251 KPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK--TVSRDKEGTSVDSSTIHWTCASSS 308
KP ++ + + R S +++S KP ++ K T SR+ + S +S + +
Sbjct: 1233 KPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSRE-QSRSQTASPVKSEKDDGN 1291
Query: 309 TLVNNFPETS-REXXXXXXXXXXXXXPEMAKL--CEVLKLREDVKDTVGKFLEYLMINHR 365
+N + +E + + L E++KL + T+GK +E +N
Sbjct: 1292 VSLNAEQKARCKELMYPVRKHMKRLRKDSSGLGRAELVKLLTECLTTIGKHIEKT-VNDT 1350
Query: 366 VDREPPSMLQAFEISLCW 383
E ++ + + C+
Sbjct: 1351 PSEEKATVRKNLWMFACY 1368
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 378 EISLCWTAASLRKQKIDHKES-----LELAKKHLHFSCKKGEADYVYSLLQCLKEVFELS 432
EI L + A +R ++H+ + +L + H KK AD L+ ++ +
Sbjct: 999 EIRLLYRAM-IRYGSLEHRYNDIVKYADLTTQDAHV-IKKIAAD----LVTASRKAVSAA 1052
Query: 433 MKDVSKYQSNARLSQSEIV 451
KD+S QSN + S+ ++
Sbjct: 1053 EKDLSNDQSNNKSSRKALL 1071
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 152 (58.6 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG++ + + ++ F++ F+FLL TRA I L+S VIIF SDW+P D
Sbjct: 658 YSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQAD 717
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
L+A R Q + + V RL + T++EK+L
Sbjct: 718 LQAQDRCHRIGQTKPVVVHRLITANTIDEKIL 749
>GENEDB_PFALCIPARUM|PFF1185w [details] [associations]
symbol:PFF1185w "iswi protein homologue"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00490 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844505 RefSeq:XP_966228.1 ProteinModelPortal:C6KT82
IntAct:C6KT82 PRIDE:C6KT82 EnsemblProtists:PFF1185w:mRNA
GeneID:3885918 KEGG:pfa:PFF1185w EuPathDB:PlasmoDB:PF3D7_0624600
OMA:EERMAFR ProtClustDB:CLSZ2515339 Uniprot:C6KT82
Length = 2719
Score = 134 (52.2 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 31/98 (31%), Positives = 57/98 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ ++ ++ FN + S F++L+ TRA I L++ + VI++ DW+P
Sbjct: 1120 YMRLDGSTNKLIRELDIREFNLSDSIYFIYLISTRAGGLGINLTAANHVIMYDEDWNPFI 1179
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q ++ V++L + TVEE++ +Q
Sbjct: 1180 DLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQ 1217
Score = 79 (32.9 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 60/246 (24%), Positives = 99/246 (40%)
Query: 469 IRGIQKKCQK-QMAKLRH--KQL-----EEKKDIDKRYEEQKAQ---LETKKRTEAAVIR 517
+R + KC Q+ KL H K EEKK+ D++ E+ K L KK E
Sbjct: 1943 LRAVCSKCGTVQLGKLAHFRKHCDKLTEEEKKEYDEKREKLKELINLLNKKKIKEEHTEE 2002
Query: 518 YHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK 577
+ N M + K K L + Y +K ++ D +R + L +A KK+ K E+ K
Sbjct: 2003 EYKN--MSVFKFKSLYSNYQDKADDILEDC-IRSMKWDIL-IADKKKIIKK-----EKEK 2053
Query: 578 SWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINIITP 637
+I N +N +N + N +NN S+ + A H L N
Sbjct: 2054 ENKKIYSKNDDDNNN-------------NNNNNNKKNNNITSMSLKAKLTHF-LSNQPLT 2099
Query: 638 VSGEGRLESPVIQ--ETVAGPLRLNNGGDKLDTIASAEAS--IAGLKERIEDSNSGDNQE 693
+S + +I+ + ++ D+L TI+ + +K+ + + DN E
Sbjct: 2100 ISSDYSDTKDIIEIRSDLTDDMK-EKINDELCTISGKRKKCIVKNIKKVKKKKGNDDNDE 2158
Query: 694 NNEPLN 699
NN N
Sbjct: 2159 NNNNSN 2164
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 26/101 (25%), Positives = 51/101 (50%)
Query: 446 SQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKK-DIDKRYEEQKAQ 504
S+ + V +++ K+ +++ + +QK+ + Q+ + ++LE KK ++ E K
Sbjct: 1562 SKCKAVEEQKKRRKMTKEERENE-KQLQKELRSQLHDSKQEELEAKKRKRAQQLERDKFI 1620
Query: 505 LETKKRTEAAVIRYHCNGKMQMDKL-KVLENEYAEKF-KEL 543
+E +KR +A +Y D+L K EN + F KEL
Sbjct: 1621 IENRKRIDALDQQYE-------DQLRKAYENVFPNNFVKEL 1654
Score = 57 (25.1 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 33/140 (23%), Positives = 66/140 (47%)
Query: 496 KRYEEQKAQLE-TKKRTE-AAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLEN 553
K EEQK + + TK+ E ++ ++ K + LE + ++ ++LERD+ + +EN
Sbjct: 1565 KAVEEQKKRRKMTKEERENEKQLQKELRSQLHDSKQEELEAKKRKRAQQLERDKFI-IEN 1623
Query: 554 LEALHVASMKKLSDKQTSWVEQV--KSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHEN 611
+ + ++ D+ E V ++++ +L N+ E+ ++ VE +N + N
Sbjct: 1624 RKRIDALD-QQYEDQLRKAYENVFPNNFVK-ELVNRI---EHAKMLKQKGIVEDNNNNNN 1678
Query: 612 LENNASNSIHISAGQNHDKL 631
NN + S H KL
Sbjct: 1679 --NNKETNKKKSTTFLHTKL 1696
Score = 57 (25.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 49/202 (24%), Positives = 77/202 (38%)
Query: 449 EIVSHRQELFKVAQKDFSRSIRGIQKKC-QKQMAKLRHKQLEEKKDIDKRYEEQKAQLET 507
EI S + K D +I G +KKC K + K++ K+ + D + +
Sbjct: 2112 EIRSDLTDDMKEKINDELCTISGKRKKCIVKNIKKVKKKKGNDDNDENNNNSNNNVDGDK 2171
Query: 508 KKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKF-KELE-----RD---RDVRLENLEALH 558
K ++ + K + KL +L N + EK K+ RD D + E L
Sbjct: 2172 KNNNKSNTSSKKKDDK-DLKKLNLLINPFHEKLIKDTHNANFIRDSFNEDFLNKAKEFLR 2230
Query: 559 VASMKKLSD-KQTSWVEQVKSWLQIQLSNKPSSNEYGHS--VECLQAVEQHNA-HENLEN 614
V +++ + + KS + NK SSN S N ++N +N
Sbjct: 2231 VTKSNLINNGNNNNNNKNKKSSSNSKNINKNSSNTKNSSNTKSSSNTKSSSNTKNKNNKN 2290
Query: 615 NASNSIHISAGQNHDKLINIIT 636
N +NS SA D L I T
Sbjct: 2291 NHNNSFLESATTAEDFLRGITT 2312
Score = 51 (23.0 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 880 AEVLLKVPESSPGEIVESGNINGD-KNEAFATTSENFNHN 918
A+ L+V +S+ ++ +GN N + KN+ ++ S+N N N
Sbjct: 2225 AKEFLRVTKSN---LINNGNNNNNNKNKKSSSNSKNINKN 2261
Score = 48 (22.0 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 844 RVPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPG---EIVESGNI 900
+V ++ N+ + N + N + G T C P+ P + G +++ + I
Sbjct: 1767 KVGEDSNNMKNITNIVDGNKIMNSSPHKGGTKCEPNEGST--TPSRNDGIKKDLMVTSTI 1824
Query: 901 NGDKNEAFATTSENFNHN 918
N + + ++ N N+N
Sbjct: 1825 NNNNSNNNNNSNNNNNNN 1842
Score = 45 (20.9 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 25/86 (29%), Positives = 36/86 (41%)
Query: 614 NNASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAE 673
NN N +I G +K++N +P G + E P E P R N G K D + +
Sbjct: 1773 NNMKNITNIVDG---NKIMNS-SPHKGGTKCE-P--NEGSTTPSR--NDGIKKDLMVT-- 1821
Query: 674 ASIAGLKERIEDSNSGDNQENNEPLN 699
S ++NS +N NN N
Sbjct: 1822 -STINNNNSNNNNNSNNNNNNNNSYN 1846
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 582 IQLSNKP-SSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKL--INIITPV 638
+ SN P N+ E +++ Q N ++N+ NS H+ +KL +N +
Sbjct: 2321 VSSSNSPYDKNKKLKDDEFEKSIIQ-NYLNKMKNSLKNSSHLDKNTIKEKLKELNYVNSR 2379
Query: 639 SGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKE 681
S + + + NN + TI++ E S+ KE
Sbjct: 2380 SNSNTKNN--MNTNIIN--NNNNNNNNQHTISAQENSLRFAKE 2418
Score = 44 (20.5 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 896 ESGNINGDKNEAFATTSENFNHN 918
ES N N +K + T+S N ++N
Sbjct: 2636 ESSNYNNNKKKKTNTSSRNSSNN 2658
Score = 44 (20.5 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 32/165 (19%), Positives = 67/165 (40%)
Query: 546 DRDVRLENLEA--LHVASMKKLSDKQTSWVEQVKSW--LQIQLSNKPSSNEYGHSVECLQ 601
D++++ E+LE L++ + L +K+ + K L +K + ++ + Q
Sbjct: 2479 DKNIKCEDLEKKLLNLCASTNLMNKKNIQHDNNKKEDNKNYMLDSKNKNKQFLFKKDNTQ 2538
Query: 602 AVEQHNAH-ENLENNASNSI-HISAGQNHDKLINIITPVS---GEGRLESPVIQETVAGP 656
E ++ + +SNS + N D I IT S G +++ ++
Sbjct: 2539 QQEAFLSNISKAKKESSNSRKRVVEDVNVDYDIKKITNTSENSGPNKVQEYILYRRNTSS 2598
Query: 657 LRLN--NGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLN 699
+ N N DK + + + + ED + D+++ NE N
Sbjct: 2599 VMSNVINNNDKSKNVRNDDED----DDDDEDDDEEDDEDKNESSN 2639
Score = 43 (20.2 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 586 NKPSSNEYGHSVECLQAVEQHNAHENLENNAS-NSIHISAGQNHDK 630
N +SN +S +N +EN EN++S N + + G ++K
Sbjct: 1825 NNNNSNNNNNSNNNNNNNNSYNFNENKENSSSTNKLMSNKGIEYNK 1870
Score = 42 (19.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 606 HNAHENLENNASNSIHISAGQNHDKLIN 633
+++++N N + N IH ++ + L+N
Sbjct: 2659 NSSNKNKNNKSGNDIHQASNLLYQNLLN 2686
Score = 40 (19.1 bits), Expect = 0.00033, Sum P(4) = 0.00033
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 862 NPLSKEQIPDGATSCIPSAEVLLKVPESSP-GEIVESGNINGDKNEAFATTSENFNHN 918
N SK++I G + S + ++ + SP + E+ N+N + N + +N N N
Sbjct: 1878 NNESKDKIMKGVGTTFLS-DGSMRFEKDSPENNMNENNNMNNNNNNE-KDSPQNNNDN 1933
>UNIPROTKB|C6KT82 [details] [associations]
symbol:PFF1185w "Smarca-related protein" species:36329
"Plasmodium falciparum 3D7" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00490 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844505 RefSeq:XP_966228.1 ProteinModelPortal:C6KT82
IntAct:C6KT82 PRIDE:C6KT82 EnsemblProtists:PFF1185w:mRNA
GeneID:3885918 KEGG:pfa:PFF1185w EuPathDB:PlasmoDB:PF3D7_0624600
OMA:EERMAFR ProtClustDB:CLSZ2515339 Uniprot:C6KT82
Length = 2719
Score = 134 (52.2 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 31/98 (31%), Positives = 57/98 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ ++ ++ FN + S F++L+ TRA I L++ + VI++ DW+P
Sbjct: 1120 YMRLDGSTNKLIRELDIREFNLSDSIYFIYLISTRAGGLGINLTAANHVIMYDEDWNPFI 1179
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q ++ V++L + TVEE++ +Q
Sbjct: 1180 DLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQ 1217
Score = 79 (32.9 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 60/246 (24%), Positives = 99/246 (40%)
Query: 469 IRGIQKKCQK-QMAKLRH--KQL-----EEKKDIDKRYEEQKAQ---LETKKRTEAAVIR 517
+R + KC Q+ KL H K EEKK+ D++ E+ K L KK E
Sbjct: 1943 LRAVCSKCGTVQLGKLAHFRKHCDKLTEEEKKEYDEKREKLKELINLLNKKKIKEEHTEE 2002
Query: 518 YHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVK 577
+ N M + K K L + Y +K ++ D +R + L +A KK+ K E+ K
Sbjct: 2003 EYKN--MSVFKFKSLYSNYQDKADDILEDC-IRSMKWDIL-IADKKKIIKK-----EKEK 2053
Query: 578 SWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINIITP 637
+I N +N +N + N +NN S+ + A H L N
Sbjct: 2054 ENKKIYSKNDDDNNN-------------NNNNNNKKNNNITSMSLKAKLTHF-LSNQPLT 2099
Query: 638 VSGEGRLESPVIQ--ETVAGPLRLNNGGDKLDTIASAEAS--IAGLKERIEDSNSGDNQE 693
+S + +I+ + ++ D+L TI+ + +K+ + + DN E
Sbjct: 2100 ISSDYSDTKDIIEIRSDLTDDMK-EKINDELCTISGKRKKCIVKNIKKVKKKKGNDDNDE 2158
Query: 694 NNEPLN 699
NN N
Sbjct: 2159 NNNNSN 2164
Score = 65 (27.9 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 26/101 (25%), Positives = 51/101 (50%)
Query: 446 SQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKK-DIDKRYEEQKAQ 504
S+ + V +++ K+ +++ + +QK+ + Q+ + ++LE KK ++ E K
Sbjct: 1562 SKCKAVEEQKKRRKMTKEERENE-KQLQKELRSQLHDSKQEELEAKKRKRAQQLERDKFI 1620
Query: 505 LETKKRTEAAVIRYHCNGKMQMDKL-KVLENEYAEKF-KEL 543
+E +KR +A +Y D+L K EN + F KEL
Sbjct: 1621 IENRKRIDALDQQYE-------DQLRKAYENVFPNNFVKEL 1654
Score = 57 (25.1 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 33/140 (23%), Positives = 66/140 (47%)
Query: 496 KRYEEQKAQLE-TKKRTE-AAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLEN 553
K EEQK + + TK+ E ++ ++ K + LE + ++ ++LERD+ + +EN
Sbjct: 1565 KAVEEQKKRRKMTKEERENEKQLQKELRSQLHDSKQEELEAKKRKRAQQLERDKFI-IEN 1623
Query: 554 LEALHVASMKKLSDKQTSWVEQV--KSWLQIQLSNKPSSNEYGHSVECLQAVEQHNAHEN 611
+ + ++ D+ E V ++++ +L N+ E+ ++ VE +N + N
Sbjct: 1624 RKRIDALD-QQYEDQLRKAYENVFPNNFVK-ELVNRI---EHAKMLKQKGIVEDNNNNNN 1678
Query: 612 LENNASNSIHISAGQNHDKL 631
NN + S H KL
Sbjct: 1679 --NNKETNKKKSTTFLHTKL 1696
Score = 57 (25.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 49/202 (24%), Positives = 77/202 (38%)
Query: 449 EIVSHRQELFKVAQKDFSRSIRGIQKKC-QKQMAKLRHKQLEEKKDIDKRYEEQKAQLET 507
EI S + K D +I G +KKC K + K++ K+ + D + +
Sbjct: 2112 EIRSDLTDDMKEKINDELCTISGKRKKCIVKNIKKVKKKKGNDDNDENNNNSNNNVDGDK 2171
Query: 508 KKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKF-KELE-----RD---RDVRLENLEALH 558
K ++ + K + KL +L N + EK K+ RD D + E L
Sbjct: 2172 KNNNKSNTSSKKKDDK-DLKKLNLLINPFHEKLIKDTHNANFIRDSFNEDFLNKAKEFLR 2230
Query: 559 VASMKKLSD-KQTSWVEQVKSWLQIQLSNKPSSNEYGHS--VECLQAVEQHNA-HENLEN 614
V +++ + + KS + NK SSN S N ++N +N
Sbjct: 2231 VTKSNLINNGNNNNNNKNKKSSSNSKNINKNSSNTKNSSNTKSSSNTKSSSNTKNKNNKN 2290
Query: 615 NASNSIHISAGQNHDKLINIIT 636
N +NS SA D L I T
Sbjct: 2291 NHNNSFLESATTAEDFLRGITT 2312
Score = 51 (23.0 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 880 AEVLLKVPESSPGEIVESGNINGD-KNEAFATTSENFNHN 918
A+ L+V +S+ ++ +GN N + KN+ ++ S+N N N
Sbjct: 2225 AKEFLRVTKSN---LINNGNNNNNNKNKKSSSNSKNINKN 2261
Score = 48 (22.0 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 844 RVPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPG---EIVESGNI 900
+V ++ N+ + N + N + G T C P+ P + G +++ + I
Sbjct: 1767 KVGEDSNNMKNITNIVDGNKIMNSSPHKGGTKCEPNEGST--TPSRNDGIKKDLMVTSTI 1824
Query: 901 NGDKNEAFATTSENFNHN 918
N + + ++ N N+N
Sbjct: 1825 NNNNSNNNNNSNNNNNNN 1842
Score = 45 (20.9 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 25/86 (29%), Positives = 36/86 (41%)
Query: 614 NNASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAE 673
NN N +I G +K++N +P G + E P E P R N G K D + +
Sbjct: 1773 NNMKNITNIVDG---NKIMNS-SPHKGGTKCE-P--NEGSTTPSR--NDGIKKDLMVT-- 1821
Query: 674 ASIAGLKERIEDSNSGDNQENNEPLN 699
S ++NS +N NN N
Sbjct: 1822 -STINNNNSNNNNNSNNNNNNNNSYN 1846
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 582 IQLSNKP-SSNEYGHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKL--INIITPV 638
+ SN P N+ E +++ Q N ++N+ NS H+ +KL +N +
Sbjct: 2321 VSSSNSPYDKNKKLKDDEFEKSIIQ-NYLNKMKNSLKNSSHLDKNTIKEKLKELNYVNSR 2379
Query: 639 SGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKE 681
S + + + NN + TI++ E S+ KE
Sbjct: 2380 SNSNTKNN--MNTNIIN--NNNNNNNNQHTISAQENSLRFAKE 2418
Score = 44 (20.5 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 896 ESGNINGDKNEAFATTSENFNHN 918
ES N N +K + T+S N ++N
Sbjct: 2636 ESSNYNNNKKKKTNTSSRNSSNN 2658
Score = 44 (20.5 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 32/165 (19%), Positives = 67/165 (40%)
Query: 546 DRDVRLENLEA--LHVASMKKLSDKQTSWVEQVKSW--LQIQLSNKPSSNEYGHSVECLQ 601
D++++ E+LE L++ + L +K+ + K L +K + ++ + Q
Sbjct: 2479 DKNIKCEDLEKKLLNLCASTNLMNKKNIQHDNNKKEDNKNYMLDSKNKNKQFLFKKDNTQ 2538
Query: 602 AVEQHNAH-ENLENNASNSI-HISAGQNHDKLINIITPVS---GEGRLESPVIQETVAGP 656
E ++ + +SNS + N D I IT S G +++ ++
Sbjct: 2539 QQEAFLSNISKAKKESSNSRKRVVEDVNVDYDIKKITNTSENSGPNKVQEYILYRRNTSS 2598
Query: 657 LRLN--NGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLN 699
+ N N DK + + + + ED + D+++ NE N
Sbjct: 2599 VMSNVINNNDKSKNVRNDDED----DDDDEDDDEEDDEDKNESSN 2639
Score = 43 (20.2 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 586 NKPSSNEYGHSVECLQAVEQHNAHENLENNAS-NSIHISAGQNHDK 630
N +SN +S +N +EN EN++S N + + G ++K
Sbjct: 1825 NNNNSNNNNNSNNNNNNNNSYNFNENKENSSSTNKLMSNKGIEYNK 1870
Score = 42 (19.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 606 HNAHENLENNASNSIHISAGQNHDKLIN 633
+++++N N + N IH ++ + L+N
Sbjct: 2659 NSSNKNKNNKSGNDIHQASNLLYQNLLN 2686
Score = 40 (19.1 bits), Expect = 0.00033, Sum P(4) = 0.00033
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 862 NPLSKEQIPDGATSCIPSAEVLLKVPESSP-GEIVESGNINGDKNEAFATTSENFNHN 918
N SK++I G + S + ++ + SP + E+ N+N + N + +N N N
Sbjct: 1878 NNESKDKIMKGVGTTFLS-DGSMRFEKDSPENNMNENNNMNNNNNNE-KDSPQNNNDN 1933
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 152 (58.6 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 35/110 (31%), Positives = 64/110 (58%)
Query: 21 VRQRFGSDSYERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVII 79
V +R G +Y R+DG S+++ + +FN+ S F+FLL ++A + L +I+
Sbjct: 680 VCKRHGY-TYTRLDGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLIL 738
Query: 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQD 127
+ DW+P D++A+ R+ D Q + ++RL + T+EEK+ ++KQD
Sbjct: 739 YDIDWNPATDIQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQD 788
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 146 (56.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 45 ALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLE 103
A++ FN S +F+F+L TRA I L+S VI++ SDW+P DL+A+ R Q +
Sbjct: 564 AIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKK 623
Query: 104 QIKVFRLYSFCTVEEKVL 121
++VFRL + TVEE+++
Sbjct: 624 PVRVFRLITDNTVEERIV 641
Score = 63 (27.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGK 523
SR+ Q++C ++ + + ++EE++ +K+ K + K++ E+A +GK
Sbjct: 1014 SRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESAT---ESSGK 1070
Query: 524 MQMDKLK 530
+ K+K
Sbjct: 1071 KDVKKVK 1077
Score = 41 (19.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 847 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 904
Query: 211 ERPHIFW 217
E +FW
Sbjct: 905 EYSAVFW 911
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 508 KKRTEAAVIRYHCN---GKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKK 564
K RT A + CN ++ + +++ E E AEK K + + E+ +S KK
Sbjct: 1013 KSRT-AMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQKRKAESATESSGKK 1071
Score = 39 (18.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 228 WKYYSGSSQGSRKRVQYFDDLQKKPELEIDEV--AKKQRRVASNCVNQ 273
W S ++ ++R L +K +EI+E A+K++R ++Q
Sbjct: 1010 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATKTPMSQ 1057
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 150 (57.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + K+ ++ FN+ S FVF+L ++A + L + +++F DW+P N
Sbjct: 540 YVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A+ R+ D Q + ++RL S T+EEK+
Sbjct: 600 DEQAMARVWRDGQKKICYIYRLLSAGTIEEKI 631
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 164 (62.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 751 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 810
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +KV+RL + + E ++
Sbjct: 811 DLQAQARCHRIGQNKAVKVYRLVTRNSYEREM 842
Score = 39 (18.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 691 NQENNEPLNPCSREQILDGATL-SMPDGHIQLGVTETISSSD-------GAGNCLLPVHS 742
N E + S + LD A L SM +G + +S + GA ++
Sbjct: 836 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEED 895
Query: 743 SGGKICDE 750
G K C+E
Sbjct: 896 EGSKFCEE 903
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 165 (63.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1283 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1342
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1343 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1374
Score = 52 (23.4 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 669 IASAEASIAGLKERIEDSNSGDNQENNEPLNPCSREQILDG-ATLSMPDGHIQLGVTETI 727
+A + ++ +++ D G + +EPL E+ LD A S+ + I G E +
Sbjct: 2867 LAGLQGAVGAGEDKAPDKAEGAAFQEDEPLEGSDAEESLDKTAESSVLEDEIAQG--EEL 2924
Query: 728 SSSDG 732
S DG
Sbjct: 2925 DSLDG 2929
Score = 47 (21.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 643 RLESPVIQETVAGPLRLNNGGDKLDTIASA---EASIAGLKERIEDSNSGDNQENNE 696
+ E QE PL ++ + LD A + E IA E ++ + GD ENNE
Sbjct: 2884 KAEGAAFQEDE--PLEGSDAEESLDKTAESSVLEDEIAQ-GEELDSLDGGDEIENNE 2937
Score = 42 (19.8 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 847 KNVNSSHGLENAISLNPLSKE--QIPDGATSCIPSAEVLLKVPESSPGEIVE 896
KN + G A +LNPL+ Q P AT P E E+ E E
Sbjct: 2079 KNFAQARGAGGAPALNPLALGFGQTP-AATPAAPGQEDKAGAAEAKAREASE 2129
Score = 40 (19.1 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 691 NQENNEPLNPCSREQILDGATL-SM------PDGHIQLGVTETISS-SDGAGNCLLPVHS 742
N E + S + LD A L SM P+G QL E GA L+
Sbjct: 1368 NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKGAYGALMDEED 1427
Query: 743 SGGKICDE 750
G K C+E
Sbjct: 1428 EGSKFCEE 1435
Score = 37 (18.1 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 616 ASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAG-PLR-LNNG 662
AS++ + S+ + L N+ TPVS + + ++Q ++ P R L NG
Sbjct: 2395 ASSTSNFSSLTSKLILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNG 2443
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 153 (58.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 526 YCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 585
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 586 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKK 509
SR+ +Q++C + + + +LEEK+ +K+ K + +K
Sbjct: 991 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRK 1036
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 153 (58.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 526 YCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 585
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 586 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKK 509
SR+ +Q++C + + + +LEEK+ +K+ K + +K
Sbjct: 991 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRK 1036
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 153 (58.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 526 YCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 585
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 586 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKK 509
SR+ +Q++C + + + +LEEK+ +K+ K + +K
Sbjct: 991 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRK 1036
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 165 (63.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1323 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1382
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1383 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1414
Score = 60 (26.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 27/88 (30%), Positives = 38/88 (43%)
Query: 819 MDSPPGEEQIATVAISAVPNEEAPLRV-PKNVNSSHGLENAISLNPLSKEQIPDGATSCI 877
M PPG +AT A +A + ++P V P + GL N L L + AT
Sbjct: 2762 MGFPPG---LATAA-TAGGDAKSPAAVLPLMLPGMAGLPNVFGLGGLLNNPL-SAATGNT 2816
Query: 878 PSAEVLLKVPESSPGEIVESGNINGDKN 905
+A + PE + E GN N D+N
Sbjct: 2817 TTASSQGE-PEDGTSKAEEKGNDNEDEN 2843
Score = 41 (19.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 601 QAVEQHNAHENLENNASNSI---HISAGQNHDKL 631
+ +E +A ENL+ +SI ++ G+ D L
Sbjct: 2940 ETLEGSDAEENLDKTVESSILEDEVAQGEELDSL 2973
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 725 ETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLEN 775
ET+ SD N V SS + DE AQ GE +++ D++EN
Sbjct: 2940 ETLEGSDAEENLDKTVESS--ILEDEV-----AQ--GEELDSLEGGDEIEN 2981
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 1457 GAYGALMDEEDEGSKFCEE 1475
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 164 (62.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1278 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1337
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +KV+RL + + E ++
Sbjct: 1338 DLQAQARCHRIGQNKAVKVYRLITRNSYEREM 1369
Score = 47 (21.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASNCVN--QSSL-KPGLEEGKTVSR---DKEGTSVDSST 299
DD+ K E E A + + + N + Q L K E + SR D +G+S SS+
Sbjct: 2158 DDILKVGESESRMEAARTKPLTPNSITRKQKKLSKRSRREARRESRSDSDSDGSSSSSSS 2217
Query: 300 IHWTCASSST 309
+ +SSS+
Sbjct: 2218 SSSSRSSSSS 2227
Score = 44 (20.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 388 LRKQKIDHKESLELAKKHLHFSCKK 412
+RK +H S + KKHL C K
Sbjct: 1659 IRKHNPEHMLSDDGYKKHLKHHCNK 1683
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 248 LQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASS 307
L K+ E ++ + + SS + S + G+S SS+ +C+S
Sbjct: 2190 LSKRSRREARRESRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSS--SCSSG 2247
Query: 308 STLVNNFPETSRE 320
S+ ++ +S E
Sbjct: 2248 SSSSSSSSSSSSE 2260
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 258 EVAKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSST 309
+++K+ RR A S G + S +S SS+ +SSS+
Sbjct: 2189 KLSKRSRREARRESRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSS 2240
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 160 (61.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 38/102 (37%), Positives = 54/102 (52%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
F Y R+DG+ ++ + +F + F FLL TRAC I L+S VI + SDW
Sbjct: 1805 FRKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDW 1864
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+P D +A R Q + V+RL + T+EEK+L AKQ
Sbjct: 1865 NPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILKRAKQ 1906
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 752 RLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIP 789
R PE +VP + S ND +P P++K + P
Sbjct: 1961 RKQPEPEVPSIADKPFSPND-----IPTTKPVNKGRPP 1993
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 165 (63.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 571 YERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 630
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 631 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 662
Score = 43 (20.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 390 KQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQC-LKEVFELSMKDVSKYQSNARLSQS 448
K+K D KE ++A K C +A+ ++C LK++ E+S DV + + S+
Sbjct: 1424 KEKSDIKEETDIADKDTKQDC---DAEAETGSVKCELKDI-EMST-DVDPKSISEKGSEE 1478
Query: 449 E 449
+
Sbjct: 1479 D 1479
Score = 37 (18.1 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 705 GAYGALMDEEDEGSKFCEE 723
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 152 (58.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 525 YCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 584
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 585 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 617
Score = 49 (22.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKK 509
SR+ +Q++C + + + +LEEK+ +K+ K + +K
Sbjct: 990 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRK 1035
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 152 (58.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 525 YCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 584
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 585 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 617
Score = 49 (22.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKK 509
SR+ +Q++C + + + +LEEK+ +K+ K + +K
Sbjct: 990 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRK 1035
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 152 (58.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 526 YCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 585
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 586 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Score = 49 (22.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKRYEEQKAQLETKK 509
SR+ +Q++C + + + +LEEK+ +K+ K + +K
Sbjct: 991 SRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRK 1036
Score = 45 (20.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 457 LFKVAQKD--FSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKR 510
LF++ +K+ F R G + ++ Q EE+ ID+ +LE K++
Sbjct: 781 LFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEK 836
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 165 (63.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1322 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1381
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1382 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1413
Score = 59 (25.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 27/88 (30%), Positives = 33/88 (37%)
Query: 819 MDSPPGEEQIATVAISAV-PNEEAPLRVPKNVNSSHGLENAISLNPLSKEQIPDGATSCI 877
M PPG AT A P PL +P GL N L L + AT
Sbjct: 2761 MGFPPGLATAATAGGDAKGPAAVLPLMLP----GMAGLPNVFGLGGLLNNPL-SAATGNT 2815
Query: 878 PSAEVLLKVPESSPGEIVESGNINGDKN 905
+A + PE + E GN N D+N
Sbjct: 2816 TTASSQGE-PEDGTSKAEEKGNDNEDEN 2842
Score = 40 (19.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 601 QAVEQHNAHENLENNASNSI---HISAGQNHDKL 631
+ +E +A ENL+ +SI ++ G+ D L
Sbjct: 2939 ETLEGSDAEENLDKTIESSILEDEVAQGEELDSL 2972
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 1456 GAYGALMDEEDEGSKFCEE 1474
Score = 37 (18.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 725 ETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPGEVAETVSSNDDLEN 775
ET+ SD N + SS + DE AQ GE +++ D++EN
Sbjct: 2939 ETLEGSDAEENLDKTIESS--ILEDEV-----AQ--GEELDSLEGGDEIEN 2980
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 128 (50.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 32 RVDGNVLDS-KKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG V +++ +Q F VFLL T+ + L++ V+IF W+P D
Sbjct: 508 RIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDA 567
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+A+ R+ Q E + V+RL + TVEEK+
Sbjct: 568 QAVDRVYRIGQKENVVVYRLITCGTVEEKI 597
Score = 75 (31.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 44/166 (26%), Positives = 70/166 (42%)
Query: 604 EQHNAHENLENNASNSIHISAGQ-NHDKLINIITPVSGEG---RLESPVIQETVAGPLRL 659
E + + + + +NSI+IS + K + TP SG R SP V L
Sbjct: 1024 EDEDEEDAFKGSHTNSINISPFPFSSVKQFDASTPQSGSNPSRRFFSPKTPGEVNTSLHS 1083
Query: 660 NNG-GDKLDTIASAEASIAGLKERI-----EDSNSGDNQENNEP-LNPCSREQILDGATL 712
+ I + ++ER+ E+S G ++ENNE C+ EQ GATL
Sbjct: 1084 RRSLASRRSLINVVLDDVEDMEERLDNSSEEESEPGLSEENNEEEALACTEEQP-SGATL 1142
Query: 713 SMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEAR-LSPEA 757
+ + L ++E S + + C P SS + D + L+ EA
Sbjct: 1143 ASGNKSSNLTMSEPTSPAPQSSPCA-PEPSSSDPMPDPPQDLAVEA 1187
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 150 (57.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 55/187 (29%), Positives = 89/187 (47%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRF-VFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ + L FN+ + +FLL TRA + L + VIIF SDW+P
Sbjct: 779 YLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 838
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QNMRPMAKFQPLV 147
DL+A R Q ++++++RL + +VEE +L A+ DG Q + K P
Sbjct: 839 DLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEE 898
Query: 148 QATFFEQTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEG 207
+ F L N+ +E + + GE +D + N IL ++G LF + E
Sbjct: 899 REAFLRSLLENENGEEEND---EKGELDDD-ELNEIL----ARG--DDELRLF-KQMTED 947
Query: 208 MDEERPH 214
++ E P+
Sbjct: 948 LERESPY 954
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 150 (57.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SY ++DG + ++ + +N + FVFLL TR + L+ + VII+ DW+P
Sbjct: 870 SYLKMDGTTTIASRQPLITRYNEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPST 929
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
D +A +R Q +Q+ V+RL + T+EEK+
Sbjct: 930 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 961
Score = 54 (24.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 477 QKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEY 536
QK +K +H+ EE+ ++K ++ +K R +A ++ + + +NE
Sbjct: 1167 QKHKSKTKHRVTEEET-LEKHLRPKQKPKNSKHRRDAKFEGTRIPHLVKKRQYQRQDNEN 1225
Query: 537 AEKFKELERDRDVRLENL--EALHVASMKK 564
+ KE D D LE L +++ V S+ K
Sbjct: 1226 ESEVKERSND-DYVLEKLFKKSVGVHSVMK 1254
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 152 (58.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ +N S +FVF+L TRA I L++ VI++ SDW+P
Sbjct: 247 YCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 306
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q + ++VFR + TVEE+++
Sbjct: 307 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 339
Score = 45 (20.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 466 SRSIRGIQKKCQKQMAKLRHK--QLEEKKDIDKR 497
SR+ +Q++C + + + +LEEK+ +K+
Sbjct: 712 SRTAMALQRRCNTLITLIERENMELEEKEKAEKK 745
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 162 (62.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG +++ ++ FN S +F+F+L TRA I L++ VII+ SDW+P
Sbjct: 509 YCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQV 568
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A+ R Q +Q++VFR + TVEE+++
Sbjct: 569 DLQAMDRAHRIGQKKQVRVFRFITDNTVEERIV 601
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 125 KQDKTPDG 132
KQD TPDG
Sbjct: 1019 KQDGTPDG 1026
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 511 TEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMK 563
TE +V Y+ G+ +K KV+ N +E + + V EAL V+ K
Sbjct: 690 TENSV--YNFEGEDYREKKKVVTNWIEPPKRERKANYAVDAYFREALRVSEPK 740
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 141 (54.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 21 VRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80
+R + S +Y R+DG++ ++ + + FNN V LL T + L+ V+
Sbjct: 1659 LRPQLPSVTYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFV 1718
Query: 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAK 125
DW+P+ DL+A+ R Q + V+RL + T+EEK++ L K
Sbjct: 1719 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQK 1763
Score = 65 (27.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 665 KLDTIASAEASIAGLKE-RIEDSNSGDNQENNEPLNPCSREQILDGATLSMPDGHIQLGV 723
+L T + E I GL++ ++ +N+ +QEN L EQ+LD TL DG +
Sbjct: 1747 RLITRGTLEEKIMGLQKFKMNIANTVISQENAS-LQSMGTEQLLDLFTLDKKDGKTEKPD 1805
Query: 724 TETISSSDGAGNCLLPVHSSGGKICDEARLSPE 756
T T S G + + V + G++ D+ + E
Sbjct: 1806 TST---SSGKAS-MKSVLENLGELWDQEQYDTE 1834
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 165 (63.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 519 YERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 578
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 579 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 610
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 653 GAYGALMDEEDEGSKFCEE 671
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 141 (54.7 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 247 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 306
Query: 88 NDLRALQRI 96
NDL+ R+
Sbjct: 307 NDLQVTIRM 315
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 147 (56.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/94 (31%), Positives = 54/94 (57%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
SY R+DG + K+ + FN+ S F+F+L ++A + L + + +F DW+P
Sbjct: 536 SYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPA 595
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
ND +A+ R+ D Q + ++RL + ++EEK+L
Sbjct: 596 NDEQAMARVWRDGQKKPCYIYRLVASGSIEEKIL 629
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 160 (61.4 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 36/109 (33%), Positives = 56/109 (51%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ +++ +Q FN F+F+L TR+ I L VI + SDW+P
Sbjct: 1117 TYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAM 1176
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYA-QN 136
D +A R Q ++ ++RL S T+EE +L A Q + D QN
Sbjct: 1177 DQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQN 1225
Score = 54 (24.1 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 402 AKKHLHFSCKKG----EADYVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQEL 457
AKK + S KKG E+ +V S+++ E S D ++ S S++V+ +
Sbjct: 1511 AKKAKYKSLKKGSLAAESKHVKSVVK-----IEDSTDDDNEEFGYVSSSDSDMVTPLSRM 1565
Query: 458 -FKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKA---QLETKKRTEA 513
K ++D + ++K K+ AK +HK+ DI +Y++ A +LE K +++
Sbjct: 1566 HMKGKKRDLI--VDTDEEKTSKKKAK-KHKKSLPNSDI--KYKQTSALLDELEPSKPSDS 1620
Query: 514 AVI 516
V+
Sbjct: 1621 MVV 1623
Score = 47 (21.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 670 ASAEASIAGLKERIEDSNSGDNQE-NNEPLNPCSREQILD 708
A EA LK R+E + DNQE EP+ +++++
Sbjct: 1278 AEDEADYMALK-RVEQEEAVDNQEFTEEPVERPEDDELVN 1316
Score = 44 (20.5 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 28/123 (22%), Positives = 45/123 (36%)
Query: 794 TSMPDGEVLLRVPEAASSSNC-TENFMDSPPGEEQIATVAISAVPNEEAPLRVPKNVNSS 852
TSMP VL+ PE N + + + SP + A+ +E P N N
Sbjct: 1642 TSMPIKRVLMIKPEKLKKGNLWSRDCVPSPDSWLPQEDAILCAMVHEYGP-----NWNFV 1696
Query: 853 HGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNINGDKNEAFA-TT 911
G ++ + + A C E++ + S+ V N+N +A T
Sbjct: 1697 SGTLYGMTAGGAYRGRYRHPAYCCERYRELIQRHILSASDSAVNEKNLNTGSGKALLKVT 1756
Query: 912 SEN 914
EN
Sbjct: 1757 EEN 1759
Score = 42 (19.8 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 153 EQTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQ 188
E +LL+ +++ ++T + +++DT +++ VKQ
Sbjct: 1339 EMSLLHSDIRDERAVITTSSQEDDT---DVLDDVKQ 1371
Score = 42 (19.8 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 760 PGEVAETVSSNDDLENVVPVNAPISKD---QIPDGATTSMPDGEVLLRVPEAASSSNCTE 816
P + T+S + L+ P+N + + + P G S+ ++ + S S
Sbjct: 1849 PSQPDNTISRSR-LQETQPINK-LGLELTLEFPRGNDDSLNQFPPMISLSIDGSDSL--- 1903
Query: 817 NFMDSPPGEEQIATVAISA 835
N+++ PPGE+ + ++A
Sbjct: 1904 NYVNEPPGEDVLKGSRVAA 1922
Score = 41 (19.5 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 498 YEEQKAQLETKK-RTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEA 556
YE+ A T+ R + V+ H Q+ ++ LENE E+ E ++ L E+
Sbjct: 1449 YEKWDADFATEAYRQQVEVLAQH-----QL--MEDLENEARER--EAAEVAEMVLTQNES 1499
Query: 557 LHVASMKKL---------SDKQTSWVEQ---VKSWLQIQLSNKPSSNEYGH 595
HV KK S K+ S + VKS ++I+ S + E+G+
Sbjct: 1500 AHVLKPKKKKKAKKAKYKSLKKGSLAAESKHVKSVVKIEDSTDDDNEEFGY 1550
Score = 39 (18.8 bits), Expect = 6.9e-05, Sum P(4) = 6.9e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 589 SSNEYGHSVECLQAVEQHNAHENLENNA 616
++ Y VE L QH E+LEN A
Sbjct: 1457 ATEAYRQQVEVLA---QHQLMEDLENEA 1481
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 165 (63.1 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1385 YERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1444
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1445 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1476
Score = 55 (24.4 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 749 DEARLSPEAQVPGEVAETVSSND------DLENVVPVNAPISKDQIPDGATTSMPDGE 800
DE L P+ Q P E V D D+E V PV+ + K + T ++P E
Sbjct: 2281 DENGLGPK-QEPKEEKMEVEEKDVTEFKTDVEQVCPVDGMVEKKPMDQEPTDTLPSSE 2337
Score = 40 (19.1 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 471 GIQKKCQKQMAKLRHK----QLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNG 522
G+Q+ +K++ L K L E++D ++ E+ ++RT+ I G
Sbjct: 1503 GVQQLSKKEIEDLLRKGAYGALMEEEDEGSKFCEEDIDQILQRRTQTITIESEGKG 1558
Score = 40 (19.1 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 788 IPDGATTSMPDG 799
+PDGA M DG
Sbjct: 2007 VPDGAVAFMADG 2018
Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 152 FEQTLLNDVVQEFSTILTQNGEDNDTRK 179
F Q L D+ S L GED ++ K
Sbjct: 3033 FPQASLADLQSAVSGALGATGEDKESDK 3060
Score = 37 (18.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 1519 GAYGALMEEEDEGSKFCEE 1537
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/115 (18%), Positives = 48/115 (41%)
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEA 513
++E +V +KD + +++ C + +E D E++ AQ E + T
Sbjct: 2292 KEEKMEVEEKDVTEFKTDVEQVCPVDGMVEKKPMDQEPTDTLPSSEDKNAQDEKELPTGN 2351
Query: 514 AVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDK 568
+ + + ++ K+ E++ +EK + E +N + AS+ D+
Sbjct: 2352 KLSTEKAS---EDEEEKMDEDDKSEKSSQAEVGALSERKNFDEESNASLSTARDE 2403
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 163 (62.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 825 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 884
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 885 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 917
Score = 46 (21.3 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 19/99 (19%), Positives = 43/99 (43%)
Query: 544 ERDRDVRLENLE-ALHVASMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNE----YGHS-- 596
+ DRD+ + + L+ ++D Q S+++ +++ Q + S + Y +
Sbjct: 1579 KHDRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNLCCLYQTNSK 1638
Query: 597 -VECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINI 634
E L + E+LEN N + + + +H L ++
Sbjct: 1639 LYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPDV 1677
Score = 45 (20.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 233 GSSQGSRKRVQYF-DDLQKKPELEIDEVAKKQRRVA---SNCVNQSSLKPGLEEG 283
G +Q + K ++ + K+ EL E ++ + + C+ SL PG E G
Sbjct: 1768 GVAQANIKNGKHLLMSISKEGELCCSEAGQRPENIGQLEAKCLASPSLNPGNESG 1822
Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 63/270 (23%), Positives = 105/270 (38%)
Query: 686 SNSGDNQENNEPLNPCSREQILDGATLSMPDGHIQLGVTETISS-SDGAGNCLLPVHSSG 744
S + ++ EN EP N E D LS+PD + +++ S LLP S
Sbjct: 1649 SRTSESLEN-EPENLVRVESRDDH--LSLPDVTCENFISKVQDVISINHDESLLP-ESLE 1704
Query: 745 GKICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQI--PDGATTSMPDGEVL 802
+ + LS E P E+ S+N + V + ISKD G + G
Sbjct: 1705 SMMYGKKVLSQE---PSSFQESPSTNTESRKDV-ITISISKDGNCQSGGPEAEIASGPTF 1760
Query: 803 LRVPEAASSSNCTENFMDSPPGEEQIATVAISA-VPNEEAPLRVPKNVNSSHGLENAI-S 860
+ EA + N + G+ + +++ + EA R P+N+ A S
Sbjct: 1761 MGSLEAGGVAQA--NIKN---GKHLLMSISKEGELCCSEAGQR-PENIGQLEAKCLASPS 1814
Query: 861 LNPLSKEQIPD--GATSC-----IPSAEVLLKVPE--SSPGEIVESGNINGDKNEAFATT 911
LNP ++ D + C + S + L+ + E S +++ S N + ++ E
Sbjct: 1815 LNPGNESGFVDMCSLSVCDSKRNLSSDQQLIDLLENKSLESKLILSQNHSDEEEEEEENE 1874
Query: 912 SENFNHNLPLHERSLTNPLPVLTQNIIEER 941
EN + + ER L T NI E+
Sbjct: 1875 EENLAMAVGMGERPEVLHLTEPTTNISREK 1904
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 238 SRKRVQYFDDLQKKPELEI 256
SR++ Q F D KK LE+
Sbjct: 1901 SREKNQGFQDETKKGSLEV 1919
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 645 ESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSG 689
E V T P R N DK D +AE + GL+++ E S+ G
Sbjct: 1323 EQGVTDGTSDIPERGNT--DKED---NAEDKVDGLQKQTESSSDG 1362
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 378 EISLCWTAASLRKQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQC 424
E LC + A R + I E+ LA L+ + G D + SL C
Sbjct: 1787 EGELCCSEAGQRPENIGQLEAKCLASPSLNPGNESGFVD-MCSLSVC 1832
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 959 GAYGALMDEEDEGSKFCEE 977
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 241 RVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEE---GKTVSRDKEGTSVDS 297
RV+ DD P++ + K + V S ++S L LE GK V +E +S
Sbjct: 1664 RVESRDDHLSLPDVTCENFISKVQDVISINHDESLLPESLESMMYGKKVL-SQEPSSFQE 1722
Query: 298 S 298
S
Sbjct: 1723 S 1723
>UNIPROTKB|J9P9W7 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00271 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 GeneTree:ENSGT00530000063427 EMBL:AAEX03004381
EMBL:AAEX03004385 EMBL:AAEX03004386 EMBL:AAEX03004382
EMBL:AAEX03004383 EMBL:AAEX03004384 EMBL:AAEX03004387
EMBL:AAEX03004388 Ensembl:ENSCAFT00000045283 OMA:PATANNS
Uniprot:J9P9W7
Length = 1470
Score = 149 (57.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ +++A ++ FN F F+L TR+ + L+ V+ + SDW+P D
Sbjct: 329 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMD 388
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128
+A R Q + ++RL S TVEE +L A Q +
Sbjct: 389 AQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKR 427
Score = 58 (25.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 789 PDGATTSMPDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVPKN 848
P + S P +LL +P S T + P E ++ A+++ + E +
Sbjct: 759 PTQTSLSTPSSPLLLGLPSVPISPPVTNLPLGLGP-ETELCAQALASTESLELA-----D 812
Query: 849 VNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNI-NGDKNE 906
+ SS + ++L P K+ +P A +P +E L + S+P +E+ ++ NG + E
Sbjct: 813 MASSE--TSPLTLVP-PKDLLPV-AVEILPISEKNLSLASSAPSPTLEADSVPNGQEQE 867
Score = 43 (20.2 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 10/60 (16%), Positives = 29/60 (48%)
Query: 417 YVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKC 476
Y L+ E E+S +++ + + ++ ++ ++E+F++ Q++ G + C
Sbjct: 558 YAMKFLEASLE--EVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEEEEGPGAGDEVSC 615
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 925 SLTNPLPVLTQNIIEERPVPSNQ 947
S NP+ +L +I+ P+P +Q
Sbjct: 712 SAPNPITMLPVHILPSPPLPPSQ 734
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 160 (61.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 36/98 (36%), Positives = 59/98 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F + + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1174 TYMRLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1233
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1234 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1271
Score = 43 (20.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 472 IQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
++KK + + + R QLEE + +R +++ E K++ +
Sbjct: 1305 LEKKLRLRQEEKR--QLEESSKVKERKRKREKYAERKRKED 1343
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 150 (57.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 25 FGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDW 84
F Y R+DG+ S+++ + + FVFLL TRA I L++ VI + SDW
Sbjct: 1467 FRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDW 1526
Query: 85 SPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+P D +A+ R Q +Q+ V+R + T+EE+++I AK+
Sbjct: 1527 NPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKE 1568
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 135 (52.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DGN + ++ FN+ + L+ T A + + V++F W+P ND
Sbjct: 485 YHRLDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPAND 544
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI 122
L+A+ R+ Q + VFRL S TVEE + +
Sbjct: 545 LQAIDRVYRIGQCRDVTVFRLISLGTVEEIIYL 577
Score = 66 (28.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 63/292 (21%), Positives = 112/292 (38%)
Query: 480 MAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK 539
+ L KQ+ E + D EE + E+ + +C K+ K +++ +E
Sbjct: 723 LCNLLQKQMTEIRQRDTDTEEDSSS-ESHDEDD------NCE-KLTAIKTSKVKDLSSES 774
Query: 540 FKELERDRDVRLENLEALHVASMKKLSD---KQTSWVEQVKSWLQIQLSNKPSSNEYGHS 596
+ELE D L+ H S K + K+ + E+ + +I+ + + +
Sbjct: 775 EEELEGVSDGELQRRS--HKDSTKDGKNHCRKRVKFAERSED--EIEHFSWSDDEGFLKA 830
Query: 597 VECLQAVEQ-HNAHENLENNASNSIHISAGQNHDK-----LINIITPVSGEGRLESPVIQ 650
V C++ E H EN S GQ+ D+ L +++ + G S
Sbjct: 831 VRCVKEKESDHRQSSRRENTTSG---FKKGQSRDEGYTGTLDSLLGGLQQVGYTHS---N 884
Query: 651 ETVAGPLRLNNGGDKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLNPCSREQILDGA 710
+ V G R D+L A E ++ +N N E +P + + G
Sbjct: 885 QKVVGSSRAE---DRLSRAAVREVFELHKHSQLP-ANQILNVSETESSDPILTDHVNGGQ 940
Query: 711 T-LSMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEARLSPEAQVPG 761
T ++ HI+ VT TI +S N + V + +C + +L AQ G
Sbjct: 941 TPMTRSRPHIEHPVTHTIKTSHRQNNLTVIVGETPSSMCRQ-QLEEMAQFFG 991
Score = 65 (27.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 56/266 (21%), Positives = 107/266 (40%)
Query: 520 CNG-KMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKS 578
CN + QM +++ + + E D D E L A+ + +K LS + +E V
Sbjct: 724 CNLLQKQMTEIRQRDTDTEEDSSSESHDEDDNCEKLTAIKTSKVKDLSSESEEELEGVSD 783
Query: 579 WLQIQLSNKPSSNEYGHSVECLQAVE-QHNAHENLENNASNSIHISAGQNHDKLINIITP 637
+ S+K S+ + G + C + V+ + + +E+ S + K + +
Sbjct: 784 GELQRRSHKDSTKD-GKN-HCRKRVKFAERSEDEIEH-----FSWSDDEGFLKAVRCVKE 836
Query: 638 VSGEGRLESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGLKE-RIEDSNS---GDNQE 693
+ R +S + T +G + D+ T + ++ + GL++ SN G ++
Sbjct: 837 KESDHR-QSSRRENTTSG-FKKGQSRDEGYT-GTLDSLLGGLQQVGYTHSNQKVVGSSRA 893
Query: 694 NNEPLNPCSREQILDGATLSMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEARL 753
+ RE +P I L V+ET SSD +L H +GG+ R
Sbjct: 894 EDRLSRAAVREVFELHKHSQLPANQI-LNVSET-ESSDP----ILTDHVNGGQT-PMTRS 946
Query: 754 SPEAQVPGEVAETVSSNDDLENVVPV 779
P + P V T+ ++ N+ +
Sbjct: 947 RPHIEHP--VTHTIKTSHRQNNLTVI 970
Score = 54 (24.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 24/108 (22%), Positives = 45/108 (41%)
Query: 434 KDVSKYQSNARLSQ-SEIVSHRQ-ELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEK 491
+++ K S+ RL + S + EL + +K F + ++ RHK ++
Sbjct: 1000 EEILKSDSDQRLGRLRSFYSQKSPELMNIIKKTFPKPNIQPNPPNAPPLSAARHKPTSKR 1059
Query: 492 KDIDKRYE------EQKAQLETKKRT---EAAVIRYHCNGKMQMDKLK 530
+ E E + + KK+T EA+ I HC+ + K+K
Sbjct: 1060 AHPNSSVEVPTPEAEDRRKTSKKKKTSETEASKIDLHCSTDLTKTKMK 1107
Score = 42 (19.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 15/83 (18%), Positives = 30/83 (36%)
Query: 424 CLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKL 483
C+K L S+ + Q +H E + + G+ QKQM ++
Sbjct: 677 CIKPAEVLDFSSGSEDEDPCCSKQRPSETHSGEQMVASNTCIGNT--GLCNLLQKQMTEI 734
Query: 484 RHKQLEEKKDIDKRYEEQKAQLE 506
R + + ++D ++ E
Sbjct: 735 RQRDTDTEEDSSSESHDEDDNCE 757
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 173 (66.0 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG + L+NFN+ S + F+FLL TRA + L S VIIF SDW+P
Sbjct: 1135 YLRLDGTTKAEDRGMLLKNFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1194
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
DL+A R Q +++V RL + +VEEK+L AK Y N+ Q ++Q
Sbjct: 1195 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK-------YKLNVD-----QKVIQ 1242
Query: 149 ATFFEQTLLNDVVQEFSTILTQNGEDND 176
A F+Q + + F + ++ E ++
Sbjct: 1243 AGMFDQKSSSHERRAFLQAILEHEEQDE 1270
Score = 40 (19.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 233 GSSQGSRKRVQYFDDLQKKPELE-IDE 258
GS Q RK V Y D L +K L+ I+E
Sbjct: 1349 GSRQ--RKEVDYSDSLTEKQWLKAIEE 1373
Score = 37 (18.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 472 IQKKCQKQMAKLRHKQLEEKKD-IDKRYEEQKAQLETK 508
+++K +K+ + EE++D +D+ E + ++ K
Sbjct: 1541 VRQKIEKEEEESEGDDSEEEEDDVDEGSESESRSVKVK 1578
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 163 (62.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 747 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 806
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 807 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 839
Score = 37 (18.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 881 GAYGALMDEEDEGSKFCEE 899
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 165 (63.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1332 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1391
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1392 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1423
Score = 47 (21.6 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 847 KNVNSSHGLENAISLNPLSKEQIPDGATSCI-PSAEVLL-KVPESSPGEIVESGNI-NGD 903
KN + G N SL PL+ + G T I SA V K S G+ ESG++ +
Sbjct: 2128 KNFAQNRGAGNMSSLGPLA---VGFGQTPAILSSAHVQEEKATGQSEGKGEESGSVATQE 2184
Query: 904 KNE 906
K E
Sbjct: 2185 KTE 2187
Score = 43 (20.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 640 GEGRLESPVIQETVAGPLRLN-NGGDKLDTI-ASAEASI----AGLKERIEDSNSGDNQE 693
G G ++P E A N G D + + +AE+SI E ++ + GD E
Sbjct: 2929 GSGEEKAPDKAEGGAFQEEENLEGSDAEENLDKTAESSIFEDEMAQGEELDSLDGGDELE 2988
Query: 694 NNE 696
NNE
Sbjct: 2989 NNE 2991
Score = 41 (19.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 603 VEQHNAHENLENNASNSI---HISAGQNHDKL 631
+E +A ENL+ A +SI ++ G+ D L
Sbjct: 2950 LEGSDAEENLDKTAESSIFEDEMAQGEELDSL 2981
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 750 EARLSPEAQVPGEVAETVSSNDDLEN 775
E+ + + GE +++ D+LEN
Sbjct: 2964 ESSIFEDEMAQGEELDSLDGGDELEN 2989
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 616 ASNSIHISAGQNHDKLINIITPVSGEGRLESPVIQETVAG-PLR-LNNG 662
AS++ + S+ + L N+ TPVS + + ++Q ++ P R L NG
Sbjct: 2450 ASSTSNFSSLTSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNG 2498
Score = 37 (18.1 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 1466 GAYGALMDEEDEGSKFCEE 1484
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 165 (63.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1334 YERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1393
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +K++RL + + E ++
Sbjct: 1394 DLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1425
Score = 43 (20.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 390 KQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQC-LKEVFELSMKDVSKYQSNARLSQS 448
K+K D KE ++A K C +A+ ++C LK++ E+S DV + + S+
Sbjct: 2187 KEKSDIKEETDIADKDTKQDC---DAEAETGSVKCELKDI-EMST-DVDPKSISEKGSEE 2241
Query: 449 E 449
+
Sbjct: 2242 D 2242
Score = 37 (18.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 1468 GAYGALMDEEDEGSKFCEE 1486
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 165 (63.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1178 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1237
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +KV+RL + + E ++
Sbjct: 1238 DLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1269
Score = 53 (23.7 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 17/82 (20%), Positives = 35/82 (42%)
Query: 694 NNEPLNPCSREQILDGATLSMPDGHIQLGVTETISSSDGAGNCLLPVHSSGGKICDEARL 753
N E L ++++ + L+ D +++G ++T S L D ++L
Sbjct: 2020 NLESLTLKLEDEVVARSRLTSQDYEVRVGSSDTAPLSRSVPPVKLEDEDDSDSELDLSKL 2079
Query: 754 SPEAQVPGEVAETVSSNDDLEN 775
SP + + + SS D+ E+
Sbjct: 2080 SPSSSSSSSSSSSSSSTDESED 2101
Score = 38 (18.4 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 388 LRKQKIDHKESLELAKKHLHFSCKK 412
+RK D E KKHL C K
Sbjct: 1554 IRKYNPDTLFQDESYKKHLKHQCNK 1578
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 682 RIEDSNSGDNQENNEPLNPCSREQILDGATLSMPD 716
++ED + D++ + L+P S ++ S D
Sbjct: 2063 KLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTD 2097
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 159 (61.0 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1140 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1199
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1200 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1237
Score = 50 (22.7 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 21/94 (22%), Positives = 50/94 (53%)
Query: 421 LLQCLKEVFELSMKDVS--KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
+LQ KE E+ +S ++ + L E+VS + ++ +K +R +K+ Q+
Sbjct: 1231 ILQRAKEKSEIQRMVISGGNFKPDT-LKPKEVVSLLLDDEELEKK---LRLRQEEKRQQE 1286
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
+ +++ ++ + +K +K+ +E +L+ K+R E
Sbjct: 1287 ESNRVKERKRKREKYAEKKKKED--ELDGKRRKE 1318
Score = 40 (19.1 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 822 PPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENAIS--LNPLSKEQIP 870
PP E + I P AP + NS + ++S +N +S +++P
Sbjct: 1369 PPDESSSDMLVIVDDPASSAPQS--RATNSPASITGSVSDTVNGISIQEVP 1417
Score = 40 (19.1 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 239 RKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK-TVSRDKEGTSVDS 297
RKR +Y + +KK E DE+ K+R+ N V P + + D SVDS
Sbjct: 1296 RKREKYAE--KKKKE---DELDGKRRKEGVNLV--IPFVPAADNSNLSADGDDSFISVDS 1348
Query: 298 S 298
+
Sbjct: 1349 A 1349
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 159 (61.0 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1146 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1205
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1206 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1243
Score = 50 (22.7 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 21/94 (22%), Positives = 50/94 (53%)
Query: 421 LLQCLKEVFELSMKDVS--KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
+LQ KE E+ +S ++ + L E+VS + ++ +K +R +K+ Q+
Sbjct: 1237 ILQRAKEKSEIQRMVISGGNFKPDT-LKPKEVVSLLLDDEELEKK---LRLRQEEKRQQE 1292
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
+ +++ ++ + +K +K+ +E +L+ K+R E
Sbjct: 1293 ESNRVKERKRKREKYAEKKKKED--ELDGKRRKE 1324
Score = 40 (19.1 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 822 PPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENAIS--LNPLSKEQIP 870
PP E + I P AP + NS + ++S +N +S +++P
Sbjct: 1375 PPDESSSDMLVIVDDPASSAPQS--RATNSPASITGSVSDTVNGISIQEVP 1423
Score = 40 (19.1 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 239 RKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK-TVSRDKEGTSVDS 297
RKR +Y + +KK E DE+ K+R+ N V P + + D SVDS
Sbjct: 1302 RKREKYAE--KKKKE---DELDGKRRKEGVNLV--IPFVPSADNSNLSADGDDSFISVDS 1354
Query: 298 S 298
+
Sbjct: 1355 A 1355
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 146 (56.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 37/113 (32%), Positives = 59/113 (52%)
Query: 25 FGSDSYE--RVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHS 82
F SY +DG++ + + FN+ +FVFL+ TRA + ++S + V+I
Sbjct: 660 FNHTSYNVSYLDGSMTYETRAKVVDEFNSDPRQFVFLISTRAGGVGLNITSANKVVIVDP 719
Query: 83 DWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQDKTPDGY 133
+W+P +DL+A R Q ++VFRL S T+EE V + KQ + GY
Sbjct: 720 NWNPSHDLQAQDRAYRIGQTRNVEVFRLISAGTIEEIVYARQIYKQQQANIGY 772
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 151 (58.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 31/93 (33%), Positives = 58/93 (62%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++ R+DG++ S+++ + +FN F+FL+ TRA I L++ VII+ SDW+P +
Sbjct: 297 TFSRLDGSMSYSEREKNIYSFNTDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQS 356
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A R Q + + V+RL + T+++K++
Sbjct: 357 DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 389
Score = 37 (18.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 387 SLRKQKIDHKESLELAKKHLHFSCKKGEADYVYS 420
S K +D KE +EL K + KG + V S
Sbjct: 416 SQSKNFLDAKELMELLKSRDYEREVKGSREKVIS 449
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 144 (55.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 29/94 (30%), Positives = 54/94 (57%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
SY R+DG + K+ + FN+ + F+F+L ++A + L + + +F DW+P
Sbjct: 536 SYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPA 595
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
ND +A+ R+ D Q + ++RL + ++EEK+L
Sbjct: 596 NDEQAMARVWRDGQKKPCYIYRLVASGSIEEKIL 629
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 163 (62.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 622 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 681
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 682 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 714
Score = 45 (20.9 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 755 PEAQVPGEVAETVSSNDDLENVVPV 779
P VP E+ E + DL + PV
Sbjct: 1474 PSRSVPAELCEAMQQKRDLGSPAPV 1498
Score = 43 (20.2 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 773 LENV-VPVNAPISKDQ-IPDGATTSMPDGEVLLRVPEAASSSNCTEN 817
LE V +P +S +Q I DGA + E+ LR SN E+
Sbjct: 1109 LEKVGMPDEKLLSAEQGISDGAQDTAERSELCLRRAVRGEGSNVDES 1155
Score = 39 (18.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 537 AEKFKELERDRDVRLENLEALHVASMKKLS 566
A KEL R D LE A A + KLS
Sbjct: 1963 APALKELPRWLDANLEYAVAADWADIVKLS 1992
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 756 GAYGALMDEEDEGSKFCEE 774
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 163 (62.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 622 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 681
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 682 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 714
Score = 45 (20.9 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 755 PEAQVPGEVAETVSSNDDLENVVPV 779
P VP E+ E + DL + PV
Sbjct: 1474 PSRSVPAELCEAMQQKRDLGSPAPV 1498
Score = 43 (20.2 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 773 LENV-VPVNAPISKDQ-IPDGATTSMPDGEVLLRVPEAASSSNCTEN 817
LE V +P +S +Q I DGA + E+ LR SN E+
Sbjct: 1109 LEKVGMPDEKLLSAEQGISDGAQDTAERSELCLRRAVRGEGSNVDES 1155
Score = 39 (18.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 537 AEKFKELERDRDVRLENLEALHVASMKKLS 566
A KEL R D LE A A + KLS
Sbjct: 1965 APALKELPRWLDANLEYAVAADWADIVKLS 1994
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 756 GAYGALMDEEDEGSKFCEE 774
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 144 (55.7 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 24 RFGSDSYERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHS 82
R+ S R+DG + +K++ + FN+ G+ F+FLL ++A I L + +I+
Sbjct: 693 RYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDP 752
Query: 83 DWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DW+P D +AL R+ D Q + ++R S T+EEK+
Sbjct: 753 DWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKI 790
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 159 (61.0 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
+Y R+DG+ S+++ + +F + FVFLL TRA I L++ VI + SDW+P
Sbjct: 1153 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1212
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1213 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1250
Score = 50 (22.7 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 21/94 (22%), Positives = 50/94 (53%)
Query: 421 LLQCLKEVFELSMKDVS--KYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQK 478
+LQ KE E+ +S ++ + L E+VS + ++ +K +R +K+ Q+
Sbjct: 1244 ILQRAKEKSEIQRMVISGGNFKPDT-LKPKEVVSLLLDDEELEKK---LRLRQEEKRQQE 1299
Query: 479 QMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTE 512
+ +++ ++ + +K +K+ +E +L+ K+R E
Sbjct: 1300 ETNRVKERKRKREKYAEKKKKED--ELDGKRRKE 1331
Score = 41 (19.5 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 239 RKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGK-TVSRDKEGTSVDS 297
RKR +Y + +KK E DE+ K+R+ N V P + + D SVDS
Sbjct: 1309 RKREKYAE--KKKKE---DELDGKRRKEGMNLV--IPFVPSADNSNLSADGDDSFISVDS 1361
Query: 298 S 298
+
Sbjct: 1362 A 1362
Score = 38 (18.4 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 822 PPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENAIS--LNPLSKEQIP 870
PP E + I P AP + NS + ++S +N +S +++P
Sbjct: 1382 PPDESSSDMLVIVDDPASSAPQS--RATNSPASMTGSVSDTVNGISIQEMP 1430
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 155 (59.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 74/261 (28%), Positives = 115/261 (44%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYERVDG+V ++ A++NF F FL TRA + L++ VI F SD++P N
Sbjct: 391 SYERVDGSVRGEERHLAIKNFGQ-QPIFTFL-STRAGGVGMNLTAADTVIFFDSDFNPQN 448
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILA--KQDKTPDGYAQNMRPMAKFQPL 146
DL+A R Q + +KV RL TVEE V A K T + +P
Sbjct: 449 DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEGGHFTLGAQKPA 508
Query: 147 VQATFFEQTLLNDVVQ-EFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGESKV 205
A L+++++ +L+ G IL + S + P E
Sbjct: 509 ADADL----QLSEILKFGLDKLLSSEGSTMHEIDLKSILGETEDGHWVSDALPTAEEGSR 564
Query: 206 EGMDEERPHIFWTNLLEGKHPCWKYYSGSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRR 265
E +E + H++ L EGK Y S+ R+ + +LQK +++ +++ R
Sbjct: 565 EP-EEGKNHMY---LFEGKD----YSKEPSKEDRESFEQLVNLQKTL---LEKTSQEGRL 613
Query: 266 VASNCVNQSSLK-PGLEEGKT 285
+ N+ S+ PGL EG T
Sbjct: 614 LR----NKGSVPIPGLVEGST 630
Score = 39 (18.8 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 473 QKKCQKQMAKLRHKQLEEKKDIDKRYEEQK 502
+K+ Q+ AK R + LEEK+ + E +K
Sbjct: 645 RKRRQEAAAK-RKRLLEEKRKKKEEAEHKK 673
Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 474 KKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQL 505
++ ++Q A + K+L E+K K E K ++
Sbjct: 644 RRKRRQEAAAKRKRLLEEKRKKKEEAEHKKKM 675
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 144 (55.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 21 VRQRFGSDSYERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVII 79
V +R G +Y R+DG S+++ + FN+ S F+FLL ++A + L +I+
Sbjct: 679 VCKRHGY-AYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLIL 737
Query: 80 FHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+ DW+P D++A+ R+ D Q + ++RL + T+EEK+
Sbjct: 738 YDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKI 778
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 154 (59.3 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 31/93 (33%), Positives = 58/93 (62%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++ R+DG++ S+++ + +FN F+FL+ TRA I L++ VII+ SDW+P +
Sbjct: 641 NFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQS 700
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A R Q + + V+RL + T+++K++
Sbjct: 701 DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 733
Score = 39 (18.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 387 SLRKQKIDHKESLELAKKHLHFSCKKGEADYVYS 420
+L K +D KE +EL K + KG + V S
Sbjct: 760 NLSKNFLDPKELMELLKSRDYEREIKGSREKVIS 793
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 158 (60.7 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 66/246 (26%), Positives = 114/246 (46%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SYER+DG+V ++ A++NF+ F+FLL T+A + L++ VI D++P N
Sbjct: 378 SYERLDGSVRGEERNLAIKNFST-KDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQN 436
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQD-KTPDGYAQNMRPMAKFQPLV 147
DL+A R Q +KV RL T+EE + A + D + R F L
Sbjct: 437 DLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGR----FSLLD 492
Query: 148 QATFFEQTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQ-GTYSTSFPLFGESKVE 206
QA L + +F + E++ + ++ L + QS+ G + T +K+
Sbjct: 493 QAQSAASGLQLSEILKFGVDKLLSSEESSVQDVDLQLILGQSRDGQWLTDEE---HAKLN 549
Query: 207 GMDEERPHIFWTNLLEGKHPCWKYYSG---SSQGSRKRVQYFDDLQKKPELEIDEVAKKQ 263
+EE +EG++ + Y+ G S S + + F+ L +K E+++ A+K+
Sbjct: 550 ESNEEEDED-----MEGQNHMY-YFEGKDYSKDPSAEDEKTFELLLEKQFAEMED-AEKE 602
Query: 264 RRVASN 269
R N
Sbjct: 603 GRALRN 608
Score = 37 (18.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 483 LRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRY 518
L +LEE++ + ++A+L+ +++ + + Y
Sbjct: 628 LTEAELEERRQKRQAAAAKRAKLQEERKKQQEELNY 663
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 143 (55.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 31/99 (31%), Positives = 57/99 (57%)
Query: 32 RVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG S+++ + FN+ S F+FLL ++A + L +I++ DW+P D+
Sbjct: 585 RLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDI 644
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQD 127
+A+ R+ D Q + ++RL + T+EEK+ ++KQD
Sbjct: 645 QAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQD 683
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 143 (55.4 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 32 RVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG + +K++ + FN+ +G F+FLL ++A I L + +++ DW+P +D
Sbjct: 651 RLDGTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQ 710
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+AL R+ D Q + ++R S T+EEK+
Sbjct: 711 QALARVWRDGQKKDCFIYRFISTGTIEEKI 740
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 143 (55.4 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 32 RVDGNVLDSKKKAALQNFNNGSG-RFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG + +K++ + FN+ +G F+FLL ++A I L + +++ DW+P +D
Sbjct: 651 RLDGTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQ 710
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+AL R+ D Q + ++R S T+EEK+
Sbjct: 711 QALARVWRDGQKKDCFIYRFISTGTIEEKI 740
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 164 (62.8 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1226 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1285
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +KV+RL + + E ++
Sbjct: 1286 DLQAQARCHRIGQNKAVKVYRLVTRNSYEREM 1317
Score = 54 (24.1 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 676 IAGLKERIEDSNSGDNQENNEPLNPCSREQILDGATLSMP 715
+ G KER E N + EN+ +P S L A + P
Sbjct: 2753 VEGKKERTESQNPENGGENSVSSSPASSTAALSTAAAASP 2792
Score = 46 (21.3 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 268 SNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSREXXXXXXX 327
S+C ++SS + S + G+S SS+ +C+S+S+ ++ +S
Sbjct: 2142 SSCSSRSSSSSS--SSSSCSHSRSGSSSSSSS---SCSSASSSSSSSSSSSSSSSSSSSE 2196
Query: 328 XXXXXXPEMAKLCE 341
E+ K E
Sbjct: 2197 ESDSEEEEVQKRAE 2210
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 260 AKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSST 309
+KKQR + S E SR +S SS H SSS+
Sbjct: 2119 SKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSS 2168
Score = 42 (19.8 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 850 NSSHGLENAISLNPLSKEQIPDGATSCIPSA-EVLLKVPESSPGEIVESG 898
N +G EN++S +P S A + P A LL PG ++ G
Sbjct: 2764 NPENGGENSVSSSPASSTAALSTAAAASPLALNPLLLSNILYPGMLLTPG 2813
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 446 SQSEIVSHRQELFKVAQKDFSRSIRGIQ--KKCQKQMAKLRHKQLEEK 491
S+ E+V + + ++ SR++ I+ +K ++Q LRH QL E+
Sbjct: 1903 SKEELVDPSIFIQPITEERASRTLYRIELLRKVREQA--LRHPQLFER 1948
Score = 39 (18.8 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 691 NQENNEPLNPCSREQILDGATL-SMPDGHIQLGVTETISSSD-------GAGNCLLPVHS 742
N E + S + LD A L SM +G + +S + GA ++
Sbjct: 1311 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEED 1370
Query: 743 SGGKICDE 750
G K C+E
Sbjct: 1371 EGSKFCEE 1378
Score = 37 (18.1 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 644 LESPVIQETVAGPLRLNNGGDKLDTIASAEASIAGL 679
L PV++E V+ R G T A+A A+ + +
Sbjct: 2621 LTGPVVREEVSRRGRRPKSGIAKATAAAAAATASSI 2656
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 283 GKTVSRDKEGTSVDSSTIHWTCASSST 309
G V D +G ++ ++W S+ T
Sbjct: 1757 GDLVIADGDGQLMEGDKVYWPTQSALT 1783
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 149 (57.5 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ +++A ++ FN F F+L TR+ + L+ V+ + SDW+P D
Sbjct: 2086 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMD 2145
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128
+A R Q + ++RL S TVEE +L A Q +
Sbjct: 2146 AQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKR 2184
Score = 64 (27.6 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 789 PDGATTSM--PDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVP 846
P A TS+ P +LLR+P S T + P G A + AV + E+ L +
Sbjct: 2514 PPPAQTSLLTPSCPLLLRLPSVPVSPPVT----NLPLGLGPEAELCAQAVASTES-LELA 2568
Query: 847 KNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNI-NGDKN 905
+S + ++ P K+ +P A +P +E L + S+P + +G++ NG +
Sbjct: 2569 DMASSE---TSPVTFVP-PKDLLPV-AVEILPMSEKNLSLASSAPSPTLAAGSVPNGQEQ 2623
Query: 906 E 906
E
Sbjct: 2624 E 2624
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 925 SLTNPLPVLTQNIIEERPVPSNQ 947
S NP+ +L +I+ P+PS Q
Sbjct: 2469 STPNPITMLPVHILPSPPLPSAQ 2491
Score = 43 (20.2 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 10/60 (16%), Positives = 29/60 (48%)
Query: 417 YVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKC 476
Y L+ E E+S +++ + + ++ ++ ++E+F++ Q++ G + C
Sbjct: 2315 YAMKFLEASLE--EVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEEEEGPGAGDEVSC 2372
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 149 (57.5 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ +++A ++ FN F F+L TR+ + L+ V+ + SDW+P D
Sbjct: 2097 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMD 2156
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDK 128
+A R Q + ++RL S TVEE +L A Q +
Sbjct: 2157 AQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKR 2195
Score = 64 (27.6 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 787 QIPDGATTSM--PDGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLR 844
Q P A TS+ P +LL +P S T + P E ++ A+++ + E +
Sbjct: 2523 QTPPPAQTSLLTPSSPLLLGLPSVPMSPPVTNLPLGLGP-EAELCAQAMASTESLELAMA 2581
Query: 845 VPKNVNSSHGLENAISLNPLSKEQIPDGATSCIPSAEVLLKVPESSPGEIVESGNI-NGD 903
SS + I+L P K+ +P A +P +E L + S+P + +G++ NG
Sbjct: 2582 ------SSE--TSPITLVP-PKDLLPV-AVEILPVSEKNLSLTSSAPSPTLAAGSVPNGQ 2631
Query: 904 KNE 906
+ E
Sbjct: 2632 EQE 2634
Score = 43 (20.2 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 10/60 (16%), Positives = 29/60 (48%)
Query: 417 YVYSLLQCLKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKC 476
Y L+ E E+S +++ + + ++ ++ ++E+F++ Q++ G + C
Sbjct: 2326 YAMKFLEASLE--EVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEEEEGPGAGDEVSC 2383
Score = 43 (20.2 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 925 SLTNPLPVLTQNIIEERPVPSNQ 947
S NP+ +L +I+ P+PS Q
Sbjct: 2480 SAPNPVTMLPVHILPSPPLPSAQ 2502
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 142 (55.0 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 29/94 (30%), Positives = 54/94 (57%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+Y R+DG + K+ + FN+ S F+F+L ++A + L + + +F DW+P
Sbjct: 536 TYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPA 595
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
ND +A+ R+ D Q + ++RL + ++EEK+L
Sbjct: 596 NDEQAMARVWRDGQKKPCYIYRLVASGSIEEKIL 629
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 163 (62.4 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 825 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 884
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 885 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 917
Score = 48 (22.0 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 30/129 (23%), Positives = 46/129 (35%)
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKR-------YEEQKAQLE 506
+ EL K KD + +G + K E K D D+ Y + ++ E
Sbjct: 1993 KHELLKEPWKDSAEGKKGFHVYSEASELKSEDMDFESKDDFDRDGNGHAQDYPGKYSEEE 2052
Query: 507 TKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK----FKELERDRDV--RLENLEALHVA 560
+K T I +Q + + EK F E +DR + RL+N+ HV
Sbjct: 2053 SKSSTSG--IAGDLGDDLQEARAPTIAQLLQEKTLFSFSEWPKDRVIINRLDNI--CHVV 2108
Query: 561 SMKKLSDKQ 569
K Q
Sbjct: 2109 LKGKWPSSQ 2117
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 19/93 (20%), Positives = 39/93 (41%)
Query: 544 ERDRDVRLENLE-ALHVASMKKLSDKQTSWVEQVKSWLQIQLSNK--PSS-----NEYGH 595
+ DRD+ + + L+ ++D Q S+++ +++ Q + ++ P S
Sbjct: 1579 KHDRDLLVGTAKHGLNRTDYYVMTDPQLSFLDAYRNYAQHKRTDAQAPESLCCLYQTNSK 1638
Query: 596 SVECLQAVEQHNAHENLENNASNSIHISAGQNH 628
E L + + E LEN N + I +H
Sbjct: 1639 LYESLTYSQMNRTSEPLENEPENLVKIEGRDDH 1671
Score = 42 (19.8 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 807 EAASSSNCTENFMDSPPGEEQIA 829
E S NC E+ PP E A
Sbjct: 2678 EPGSDQNCPESRAPVPPDREHAA 2700
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 959 GAYGALMDEEDEGSKFCEE 977
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 163 (62.4 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 39/93 (41%), Positives = 56/93 (60%)
Query: 29 SYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+YER+DG V + ++AA+ F S RFVFLL TRA I L++ IIF SDW+P
Sbjct: 825 TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 884
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
NDL+A R Q + +KV+RL + + E ++
Sbjct: 885 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 917
Score = 48 (22.0 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 30/129 (23%), Positives = 46/129 (35%)
Query: 454 RQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKR-------YEEQKAQLE 506
+ EL K KD + +G + K E K D D+ Y + ++ E
Sbjct: 1993 KHELLKEPWKDSAEGKKGFHVYSEASELKSEDMDFESKDDFDRDGNGHAQDYPGKYSEEE 2052
Query: 507 TKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEK----FKELERDRDV--RLENLEALHVA 560
+K T I +Q + + EK F E +DR + RL+N+ HV
Sbjct: 2053 SKSSTSG--IAGDLGDDLQEARAPTIAQLLQEKTLFSFSEWPKDRVIINRLDNI--CHVV 2108
Query: 561 SMKKLSDKQ 569
K Q
Sbjct: 2109 LKGKWPSSQ 2117
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 19/93 (20%), Positives = 39/93 (41%)
Query: 544 ERDRDVRLENLE-ALHVASMKKLSDKQTSWVEQVKSWLQIQLSNK--PSS-----NEYGH 595
+ DRD+ + + L+ ++D Q S+++ +++ Q + ++ P S
Sbjct: 1579 KHDRDLLVGTAKHGLNRTDYYVMTDPQLSFLDAYRNYAQHKRTDAQAPESLCCLYQTNSK 1638
Query: 596 SVECLQAVEQHNAHENLENNASNSIHISAGQNH 628
E L + + E LEN N + I +H
Sbjct: 1639 LYESLTYSQMNRTSEPLENEPENLVKIEGRDDH 1671
Score = 42 (19.8 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 807 EAASSSNCTENFMDSPPGEEQIA 829
E S NC E+ PP E A
Sbjct: 2678 EPGSDQNCPESRAPVPPDREHAA 2700
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 732 GAGNCLLPVHSSGGKICDE 750
GA L+ G K C+E
Sbjct: 959 GAYGALMDEEDEGSKFCEE 977
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 144 (55.7 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1041 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1100
Query: 89 DLRALQR 95
D++A R
Sbjct: 1101 DIQAFSR 1107
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 144 (55.7 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG + ++ A+ FN G+ +F FLL TRA I L++ VII+ SDW+P N
Sbjct: 1067 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1126
Query: 89 DLRALQR 95
D++A R
Sbjct: 1127 DIQAFSR 1133
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 155 (59.6 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 39/113 (34%), Positives = 62/113 (54%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
SY +DG++ +++ + +FN+ +FVFL+ T+A + ++S + V+IF W+P
Sbjct: 613 SYSYLDGSLAIEERQQIVDDFNSDPQQFVFLISTKAGGVGLNITSANKVVIFDPHWNPSW 672
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLI--LAKQDKTPDGY-AQNMR 138
DL+A R Q + VFRL S T+EE V + KQ + GY A N R
Sbjct: 673 DLQAQDRAYRIGQTRDVDVFRLVSQGTIEEIVYARQIYKQQQANIGYNASNER 725
Score = 45 (20.9 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 27/94 (28%), Positives = 41/94 (43%)
Query: 677 AGLKERIEDSNSGDNQENN-EPLNP--CSREQILDGA-TLSMPDGHIQLGVTETISSSDG 732
AG+ ++E +SGD +E L S+ Q+ G GH + + I SS G
Sbjct: 790 AGIPIKLEPGSSGDAEERGASQLADFLTSKPQVKPGGENHERSPGHDAI---QAILSSAG 846
Query: 733 AGNCLLPVHSSG-GKICDEARLSPEAQVPGEVAE 765
G G K+ EA+LS +A+ E+ E
Sbjct: 847 VGYTHDNAEVVGTSKV--EAQLSRKAERDHEIDE 878
Score = 40 (19.1 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 836 VPNEEAPLRVPKNVNSSHGLENAISLNPLSKEQIPD--GATSCIPSAEVLLKVPESSPGE 893
V E R V HG+ ++ SK QI + G E + PES +
Sbjct: 1003 VKTESTSARTKTEVPEEHGMVGLENVQTKSKVQIKNEAGVADSKVKMEPVNDEPESDSDD 1062
Query: 894 I 894
+
Sbjct: 1063 L 1063
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 164 (62.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ IIF SDW+P N
Sbjct: 1225 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1284
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
DL+A R Q + +KV+RL + + E ++
Sbjct: 1285 DLQAQARCHRIGQNKAVKVYRLVTRNSYEREM 1316
Score = 44 (20.5 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 37/137 (27%), Positives = 57/137 (41%)
Query: 594 GHSVECLQAVEQHNAHENLENNASNSIHISAGQNHDKLINIIT--PVSGEGRLES---PV 648
G + LQA++Q NL+N S+ ++AG L+ + T P GE + + P+
Sbjct: 2666 GVDLTTLQALQQ-----NLQN--LQSLQVTAG-----LMGMPTGLPSGGEAKNMAAMFPM 2713
Query: 649 IQETVAG-PLRLNNGG--------DKLDTIASAEASIAGLKERIEDSNSGDNQENNEPLN 699
+ +AG P L GG D S G ER E +S + EN+ +
Sbjct: 2714 LLSGMAGLPNLLGMGGLLTKPTESGTEDKKGSDSKESEGKTERTESQSSENGGENSVSSS 2773
Query: 700 PC-SREQILDGATLSMP 715
P S L+ A + P
Sbjct: 2774 PSTSSTAALNTAAAANP 2790
Score = 41 (19.5 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 446 SQSEIVSHRQELFKVAQKDFSRSIRGIQ--KKCQKQMAKLRHKQLEEK 491
S+ E+V + + ++ SR++ I+ +K ++Q LRH QL E+
Sbjct: 1902 SKEELVDPNIFIQPITEERASRTLYRIELLRKVREQA--LRHPQLFER 1947
Score = 40 (19.1 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 268 SNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSSTLVNNFPETSREXXXXXXX 327
S+C ++SS + S + G+S SS+ +C+S+S+ ++ +S
Sbjct: 2141 SSCSSRSSSS---SSSSSCSHSRSGSSSSSSS---SCSSASSSSSSSTSSSSSSSSSSSE 2194
Query: 328 XXXXXXPEMAK 338
E K
Sbjct: 2195 ESDSDEEEAQK 2205
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 691 NQENNEPLNPCSREQILDGATL-SMPDGHIQLGVTETISSSD-------GAGNCLLPVHS 742
N E + S + LD A L SM +G + +S + GA ++
Sbjct: 1310 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEED 1369
Query: 743 SGGKICDE 750
G K C+E
Sbjct: 1370 EGSKFCEE 1377
Score = 38 (18.4 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 644 LESPVIQETVAGPLRLNNGGDKLDTIASAEAS 675
L PV++E V+ R G T A+A AS
Sbjct: 2618 LTGPVVREEVSRRGRRPKSGIAKATAAAAAAS 2649
Score = 37 (18.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 260 AKKQRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHWTCASSST 309
A K+ RV SS E + S +S SS H SSS+
Sbjct: 2117 ASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSS 2166
Score = 37 (18.1 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 283 GKTVSRDKEGTSVDSSTIHWTCASSST 309
G V D +G ++ ++W S+ T
Sbjct: 1756 GDLVIADGDGQLMEGDKVYWPTQSALT 1782
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 146 (56.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/190 (25%), Positives = 84/190 (44%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
S+ R+DG+ +++ + FNN F+F+ TR+ I L++ + VI + +DW+P
Sbjct: 1810 SFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSI 1869
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
D +A+ R Q + + VFR TVEE + Q + D NM +
Sbjct: 1870 DKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSK 1929
Query: 149 ATFFEQT-----LLN-DVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGE 202
T + T N D ++E N +D+D K ++ + +++ + F E
Sbjct: 1930 ITDTDPTHNKDWFTNVDTIKEVFINKKNNDDDDDMYKDRLLHEQVENKDKMNVRFEKTLE 1989
Query: 203 SKVEGMDEER 212
VE D+ R
Sbjct: 1990 H-VEDKDDIR 1998
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 146 (56.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/190 (25%), Positives = 84/190 (44%)
Query: 29 SYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
S+ R+DG+ +++ + FNN F+F+ TR+ I L++ + VI + +DW+P
Sbjct: 1810 SFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSI 1869
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGYAQNMRPMAKFQPLVQ 148
D +A+ R Q + + VFR TVEE + Q + D NM +
Sbjct: 1870 DKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSK 1929
Query: 149 ATFFEQT-----LLN-DVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTYSTSFPLFGE 202
T + T N D ++E N +D+D K ++ + +++ + F E
Sbjct: 1930 ITDTDPTHNKDWFTNVDTIKEVFINKKNNDDDDDMYKDRLLHEQVENKDKMNVRFEKTLE 1989
Query: 203 SKVEGMDEER 212
VE D+ R
Sbjct: 1990 H-VEDKDDIR 1998
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 168 (64.2 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 39/93 (41%), Positives = 57/93 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
YER+DG V + ++AA+ F+ S RFVFLL TRA I L++ +IF SDW+P N
Sbjct: 1213 YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQN 1272
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A R Q + +KV+RL + + E ++L
Sbjct: 1273 DLQAQARCHRIGQSKAVKVYRLITRNSYEREML 1305
Score = 44 (20.5 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 20/115 (17%), Positives = 46/115 (40%)
Query: 455 QELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAA 514
Q L + ++ SR++ + C+ + L H LEE+ + + + + K
Sbjct: 1927 QSLAPITEERASRTLYRVTLLCRLRERVLPHPSLEERLSLAPQTSDLPSWWSIPKHDHEL 1986
Query: 515 VIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQ 569
++ +G + +L + +++ + R L+N +A A + S Q
Sbjct: 1987 LLAAARHG-VSRTELSI----FSDPLYSFSQSRLDYLQNQQAQAAAQIHAFSQSQ 2036
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 271 VNQSSLKPGLEEGKTVSRDKEGTSVDSSTIHW 302
+N S L + G+ R K +S D + W
Sbjct: 1564 LNHSGLSIPVPRGRKGKRVKAQSSFDVQKVEW 1595
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 141 (54.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
+ R+DG + K+ + +F + + F+FLL +++ I L S + +I+ DW+P ND
Sbjct: 654 FVRLDGGINIKKRHKVINDFTHSADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPAND 713
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+AL R+ + Q + ++RL+ T++EKV
Sbjct: 714 KQALARVWREGQKKICYIYRLFCTGTIDEKV 744
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 25/114 (21%), Positives = 48/114 (42%)
Query: 746 KICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRV 805
KIC RL + +V + S D L N++ +SKDQ+ D + + + + V
Sbjct: 727 KICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQMSDENVKKLFNYK-MNTV 785
Query: 806 PEAASSSNCTE-NFMDSPPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENA 858
E + C N P ++A V ++ ++ + N N+++ N+
Sbjct: 786 SETHDNIECNRCNLNGVSPNIHKVAHV--DSINKNKSKGKNDNNNNNNNNNSNS 837
Score = 54 (24.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 39/190 (20%), Positives = 74/190 (38%)
Query: 425 LKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQ-----KDFSRSIRGIQKKCQKQ 479
+K++F M VS+ N ++ + + KVA K+ S+
Sbjct: 774 VKKLFNYKMNTVSETHDNIECNRCNLNGVSPNIHKVAHVDSINKNKSKGKNDNNNNNNNN 833
Query: 480 MAKLRHKQLEEKKDIDKRY---EEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEY 536
+ K D DK Y E QLE + + +H N D + + +
Sbjct: 834 NSNSNGNGNNYKSDDDKNYIDGEHFAEQLEDFEEDDVNTWAHHQNIDTVPDNILIKAVKD 893
Query: 537 AEKFKELERDRDVRLENLEALHVA-SMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGH 595
AE++K+ + + L+ L V +M + + ++Q KS Q ++ K +S G
Sbjct: 894 AEEYKKNDMNSMPLLQKLTHDFVTFTMSCKIEYRDDLIKQ-KSE-QAKMREKGASQTNGK 951
Query: 596 SVECLQAVEQ 605
S++ ++ Q
Sbjct: 952 SMKEMKLESQ 961
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 895 VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNI 937
+E+ N+ ++ + S N N N + P +T+N+
Sbjct: 1156 IENNNMKKEEEANYGNNSHNKNKNEEKIKNGKDEPSKRITRNM 1198
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 678 GLKERIEDSNS--GDNQENNE 696
G +E ED + GD ++N+E
Sbjct: 972 GKREEDEDEDEFDGDEEDNDE 992
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 141 (54.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
+ R+DG + K+ + +F + + F+FLL +++ I L S + +I+ DW+P ND
Sbjct: 654 FVRLDGGINIKKRHKVINDFTHSADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPAND 713
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+AL R+ + Q + ++RL+ T++EKV
Sbjct: 714 KQALARVWREGQKKICYIYRLFCTGTIDEKV 744
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 25/114 (21%), Positives = 48/114 (42%)
Query: 746 KICDEARLSPEAQVPGEVAETVSSNDDLENVVPVNAPISKDQIPDGATTSMPDGEVLLRV 805
KIC RL + +V + S D L N++ +SKDQ+ D + + + + V
Sbjct: 727 KICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQMSDENVKKLFNYK-MNTV 785
Query: 806 PEAASSSNCTE-NFMDSPPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENA 858
E + C N P ++A V ++ ++ + N N+++ N+
Sbjct: 786 SETHDNIECNRCNLNGVSPNIHKVAHV--DSINKNKSKGKNDNNNNNNNNNSNS 837
Score = 54 (24.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 39/190 (20%), Positives = 74/190 (38%)
Query: 425 LKEVFELSMKDVSKYQSNARLSQSEIVSHRQELFKVAQ-----KDFSRSIRGIQKKCQKQ 479
+K++F M VS+ N ++ + + KVA K+ S+
Sbjct: 774 VKKLFNYKMNTVSETHDNIECNRCNLNGVSPNIHKVAHVDSINKNKSKGKNDNNNNNNNN 833
Query: 480 MAKLRHKQLEEKKDIDKRY---EEQKAQLETKKRTEAAVIRYHCNGKMQMDKLKVLENEY 536
+ K D DK Y E QLE + + +H N D + + +
Sbjct: 834 NSNSNGNGNNYKSDDDKNYIDGEHFAEQLEDFEEDDVNTWAHHQNIDTVPDNILIKAVKD 893
Query: 537 AEKFKELERDRDVRLENLEALHVA-SMKKLSDKQTSWVEQVKSWLQIQLSNKPSSNEYGH 595
AE++K+ + + L+ L V +M + + ++Q KS Q ++ K +S G
Sbjct: 894 AEEYKKNDMNSMPLLQKLTHDFVTFTMSCKIEYRDDLIKQ-KSE-QAKMREKGASQTNGK 951
Query: 596 SVECLQAVEQ 605
S++ ++ Q
Sbjct: 952 SMKEMKLESQ 961
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 895 VESGNINGDKNEAFATTSENFNHNLPLHERSLTNPLPVLTQNI 937
+E+ N+ ++ + S N N N + P +T+N+
Sbjct: 1156 IENNNMKKEEEANYGNNSHNKNKNEEKIKNGKDEPSKRITRNM 1198
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 678 GLKERIEDSNS--GDNQENNE 696
G +E ED + GD ++N+E
Sbjct: 972 GKREEDEDEDEFDGDEEDNDE 992
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 150 (57.9 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ ++ +++N+N GS F FLL TRA I L++ VI+F SDW+P
Sbjct: 624 YARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQM 683
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DL+A R Q + + V+R + ++EEK++
Sbjct: 684 DLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMV 716
Score = 51 (23.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 16/77 (20%), Positives = 36/77 (46%)
Query: 434 KDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEKKD 493
KD + A+ S++ S K + + G KK + + ++ EE+++
Sbjct: 1142 KDAPPSKPPAKPSKASAKSKPAPKSKTSTTTKPTTTNGRGKKKPVEEEEPMEEEEEEEEE 1201
Query: 494 IDKRYEEQKAQLETKKR 510
+++ EE++ ++ KKR
Sbjct: 1202 VEEEEEEEEVKVPLKKR 1218
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 230 YYSGSSQGSRKRVQYF-DDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLEEGKT-VS 287
+ G RK Q +++Q K E E+ + ++ + S + L +E+G+ +
Sbjct: 941 FIRGCELYGRKAYQSIAEEVQTKTEKEVQQYSQAFWKKHSEVADHEKLVARIEKGEERIM 1000
Query: 288 RDKE 291
+ KE
Sbjct: 1001 KYKE 1004
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 484 RHKQLEEKKDIDKRYEEQKAQLETKKRTEAAV 515
+ K +EE++ +++ EE++ E ++ E V
Sbjct: 1182 KKKPVEEEEPMEEEEEEEEEVEEEEEEEEVKV 1213
Score = 37 (18.1 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 246 DDLQKKPELEIDEVAKKQRRVASN 269
D + KK E + +++ K + +ASN
Sbjct: 772 DSILKKGEEKTEQLNSKVKDLASN 795
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 478 KQMAKLRHKQLEEKKDIDKRYEEQK 502
K + K +++E K+ +KR +E++
Sbjct: 1091 KYIIKEHQEEVEAAKEAEKRKKEKE 1115
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 153 (58.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 35/97 (36%), Positives = 56/97 (57%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ S ++ + +F + FVFLL TRA I L++ VI + SDW+P D
Sbjct: 1199 YMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVD 1258
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+A+ R Q +Q+ V+RL T+EE++L A++
Sbjct: 1259 QQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRARE 1295
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 730 SDGAGNCLLPVHSSGGKICDEARLSPEAQVPG 761
S G N +P+H +E R SP Q PG
Sbjct: 1542 SGGGDNAGVPLHE------EEYRTSPSGQSPG 1567
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 141 (54.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ + +++A L +FN GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 829 FQRLDGSIGELRRQA-LDHFNAXGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 887
Query: 89 DLRALQRITLDPQLEQI 105
DL+A R Q +Q+
Sbjct: 888 DLQAQARAHRIGQKKQV 904
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 144 (55.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 32 RVDGNVLDSKKKAALQNFNNGS-GRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG+ SK++ + N+ + F FLL ++A + L + +++F DW+P ND
Sbjct: 580 RLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDK 639
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+A R+ D Q +++ V+R S T+EEKV
Sbjct: 640 QAAARVWRDGQKKRVYVYRFLSTGTIEEKV 669
Score = 47 (21.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 865 SKEQIPDGATSCIPSAEVLLKVPESSPGEIVE-SGNINGDKNEAFATTSENFNHNLPLHE 923
+ + +PD EV G++V N++ E SE N N P+++
Sbjct: 792 TSKSVPDAILQASAGDEVTFVFTNQVDGKLVPIESNVSPKTVE-----SEEHNRNQPVNK 846
Query: 924 RSLTNP 929
R+ P
Sbjct: 847 RAFNKP 852
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 263 QRRVASNCVNQSSLKPGLEEGKTVSRDKEGTSVDSSTI 300
++ S C N +S +EEG + D +D I
Sbjct: 719 EKMSCSRCQNDASGTENIEEGNENNVDDNACQIDQEDI 756
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 148 (57.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 38/104 (36%), Positives = 54/104 (51%)
Query: 30 YERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y R+DG+ ++ L FN S F FLL TRA + L + VIIF +DW+P
Sbjct: 834 YMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQ 893
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDG 132
DL+A R Q ++++ RL + +VEE +L A Q DG
Sbjct: 894 DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDG 937
Score = 47 (21.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/147 (21%), Positives = 58/147 (39%)
Query: 432 SMKDVSKYQSNARLSQSEIVSHRQELFKVAQKDFSRSIRGIQKKCQKQMAKLRHKQLEEK 491
S K K +L+++ ++ + + +K S+S KK + K + K L
Sbjct: 1197 SKKKKPKLTVKIKLNKTTVLENNDGK-RAEEKPESKSPA---KKTAAKKTKTKSKSLGIF 1252
Query: 492 KDIDKRYEEQKAQL-ETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKF--KELERDRD 548
++K EE + QL E ++ + + D KV+E A K +
Sbjct: 1253 PTVEKLVEEMREQLDEVDSHPRTSIFEKLPSKRDYPDYFKVIEKPMAIDIILKNCKNGTY 1312
Query: 549 VRLENL-EALHVA-SMKKLSDKQTSWV 573
LE + +AL + +++ SWV
Sbjct: 1313 KTLEEVRQALQTMFENARFYNEEGSWV 1339
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 839 EEAPLRVPKNVNSSHGLENAISLNPLSKEQ--IPDGATSCIPSAEVLLKVPESSPGEIVE 896
EE L ++ N S LE+AI ++E+ + T E L PE+S ++E
Sbjct: 1065 EEQFLEAVEDDNMS--LEDAIKKRREARERRRLRQNGTK-ENEIETLENTPEASETSLIE 1121
Query: 897 SGNINGDKNE 906
+ + +E
Sbjct: 1122 NNSFTAAVDE 1131
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 141 (54.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 41/100 (41%), Positives = 56/100 (56%)
Query: 29 SYERVDGN--VLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSP 86
SY+R+DG VLD ++ + FN FVFLL TRA I L+S + +II D++P
Sbjct: 795 SYKRLDGQTPVLD--RQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNP 852
Query: 87 VNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
ND +A R Q + + V RL S TVE +L LAK+
Sbjct: 853 YNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKK 892
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 144 (55.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/105 (32%), Positives = 58/105 (55%)
Query: 21 VRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIF 80
+R+ S +Y R+DG+V S+++ + NFN+ V LL T + L+ VI
Sbjct: 1735 LRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFV 1794
Query: 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAK 125
DW+P+ DL+A+ R Q + + V+RL + ++EEK++ L K
Sbjct: 1795 EHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQK 1839
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 151 (58.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 42 KKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDP 100
++ A++ FN S RF+F+L TRA I L+S VI++ SDW+P DL+A+ R
Sbjct: 556 QREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 615
Query: 101 QLEQIKVFRLYSFCTVEEKVL 121
Q + ++VFRL + TVEE+++
Sbjct: 616 QKKPVRVFRLITDNTVEERIV 636
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 154 QTLLNDVVQEFSTILTQNGEDNDTRKFNIILKVKQSQGTY---STSFPLFGESKVEGMDE 210
+ L + +E +LTQ + R FN +K + G + + + G+S E M
Sbjct: 842 EPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVM-- 899
Query: 211 ERPHIFW 217
E +FW
Sbjct: 900 EYSAVFW 906
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 143 (55.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
Y R+DG+ ++ + +F FVFLL TRA I L++ VI + SDW+P D
Sbjct: 1364 YCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTID 1423
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
+A+ R Q Q+ V+RL + T+EE++
Sbjct: 1424 SQAMDRAHRLGQTRQVTVYRLITRSTIEERI 1454
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 140 (54.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 29 SYERVDGNVLDSKKKAALQNFN-----------NGSGRFVFLLETRACRPSIKLSSVHAV 77
SYER+DG+V ++ AA++NF+ +GS FVF++ TRA + L + V
Sbjct: 419 SYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTV 478
Query: 78 IIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
I + DW+P D +ALQR Q+ + L + +VEE +L A++
Sbjct: 479 IFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAER 527
>ZFIN|ZDB-GENE-080618-2 [details] [associations]
symbol:prdm1b "PR domain containing 1b, with ZNF
domain" species:7955 "Danio rerio" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0018149 "peptide cross-linking" evidence=IEA]
InterPro:IPR003302 Pfam:PF02389 ZFIN:ZDB-GENE-080618-2
GO:GO:0005737 GeneTree:ENSGT00700000104630 GO:GO:0018149
EMBL:CU693379 IPI:IPI00961681 Ensembl:ENSDART00000109480
OMA:TISKESH Bgee:F1Q7Q5 Uniprot:F1Q7Q5
Length = 538
Score = 137 (53.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 67/263 (25%), Positives = 122/263 (46%)
Query: 686 SNSGDNQENNEPLNPCSREQILDGATLSMPDGHIQLGVTETISSSDGA-GNCLLPVHSSG 744
S S Q + ++ S + D +++S+P I V ++ SSSD L+P SS
Sbjct: 111 STSSIPQSASTSVSQISTSSVPDSSSVSVPQIFIS-SVPQSSSSSDPQISTSLIPEFSSS 169
Query: 745 G--KICDEARL-SPEAQVPGEVAETV--SSNDDLENVVPVNA-PISKDQIPDGATTSMPD 798
+I + L S VP ++ SS+ + + + S +P +T+S+P
Sbjct: 170 SDPQIFTSSILQSTSTSVPQISTSSIPQSSSSSVPQISTSSIHQSSPTSVPQMSTSSIPQ 229
Query: 799 GEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAISAVPNEEAPLRVPKNVNSSHGLENA 858
G VP+ ++SS ++ S P QI+T S++P + +P VP+ SS ++
Sbjct: 230 GSSS-SVPQISTSS-IPQSSSSSVP---QIST---SSIP-QSSPTSVPQISTSSIPQGSS 280
Query: 859 ISLNPLSKEQIPDGATSCIPSAEVLLK-------VPESSPGEIVESGNINGDKNEAFATT 911
S+ +S IP +T+ +P + L +P+SS + +S N + ++F+T
Sbjct: 281 SSVPQISISSIPQSSTNSVPHSSTPLVHESSSSYIPQSSTSTMHDSFNSDSTMTQSFSTN 340
Query: 912 SENFNHNLPLHERSLTNPLPVLT 934
+ N NLP E S ++P ++
Sbjct: 341 T-NSAFNLP--EDSFSHPADTIS 360
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 140 (54.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 26 GSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWS 85
G +Y R+DG+ SK++ + FN VFLL T+ + L+ VII+ DW+
Sbjct: 658 GDFNYLRMDGSTPISKRQMLVDAFNQDPDMHVFLLTTKVGGLGVNLTGADRVIIYDPDWN 717
Query: 86 PVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
P D++A +R Q I ++RL + ++EEK+
Sbjct: 718 PSTDIQARERAWRLGQKRDITIYRLMTTGSIEEKI 752
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 144 (55.7 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 32 RVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVNDL 90
R+DG+ ++ L+ FN S F+F+L TRA + L + VIIF SDW+P DL
Sbjct: 2071 RLDGSTKSDERGHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDL 2130
Query: 91 RALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPD 131
+A R Q + ++V RL + +VEE +L A K D
Sbjct: 2131 QAQDRAHRIGQKQTVRVLRLVTAHSVEESILARANFKKELD 2171
Score = 56 (24.8 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 887 PESSPGEIVESGNINGDKNEAFATTSENFNHNLPLHERSLTNP 929
P +SP + ++ NI+ + N + N N+N H++S NP
Sbjct: 2785 PPASPCNLSQNNNISNNNNN-INNNNNNINNNNENHQQS-QNP 2825
Score = 52 (23.4 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 745 GKICDEARLSPEAQVPGEVAETVSSNDDLENVV 777
GK + RLS E ++P + + V DDL V+
Sbjct: 2249 GKKGEAKRLSQEDEIPSWITKEVELGDDLSFVL 2281
Score = 52 (23.4 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 58/266 (21%), Positives = 110/266 (41%)
Query: 450 IVSHRQELFKVAQKDFSRSI-RGIQKKCQ---KQMAKLRHKQLEEKKDIDKRYEEQKAQL 505
+ +H E +A+ +F + + + I + Q K R K LE+ D+ E +K +
Sbjct: 2151 VTAHSVEESILARANFKKELDKKIIQAGQFNNKSNRSDRKKMLEDLMTQDETAEMEKQTV 2210
Query: 506 ETKKRTEAAVIRYHCNGKMQMDKLKVLENEYAEKFKELERDRDVRLENLEALHVASMKKL 565
T + + R ++ ++ EN E+ + ++ D EA K+L
Sbjct: 2211 PTDSQINEMIAR-------SPEEFELYENMDKERMEIDQKKWD------EAGKKGEAKRL 2257
Query: 566 S--DKQTSWV-EQVKSW--LQIQLSN--KPSSNEYGHSVEC-LQAVEQHNAHENLENNAS 617
S D+ SW+ ++V+ L L+ KP S++ +E LQ + + + A+
Sbjct: 2258 SQEDEIPSWITKEVELGDDLSFVLNQSIKPGSSKKSLDLENELQIRKILESGKIKRKTAN 2317
Query: 618 NSIHISAGQNHDKLINIITPVSGEGRLES-PVIQETVAG--PL---RLNNGGDKLDTIAS 671
N+ IS + D + + + ES P + T P NN +K +T
Sbjct: 2318 NNAMISEFFDDDDDGSSSSSSDSDSDFESKPTPKRTTTSDKPKSSKESNNRKEKKNTKEK 2377
Query: 672 A-EASIAGLKERIEDSNSGDNQENNE 696
+ GL + +D+NS +N N++
Sbjct: 2378 LKDKDTNGLDDDDDDNNSNNNNNNDD 2403
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 151 (58.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 30 YERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVND 89
+ R+DG++ S+++ + +FN F+FL+ TRA I L++ VII+ SDW+P +D
Sbjct: 625 FSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSD 684
Query: 90 LRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
L+A R Q + + V+RL + T+++K++
Sbjct: 685 LQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 716
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 387 SLRKQKIDHKESLELAKKHLHFSCKKGEADYVYS 420
S K +D KE +EL K + KG + V S
Sbjct: 743 SQSKNFLDAKELMELLKSRDYEREVKGSREKVIS 776
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 141 (54.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 29/101 (28%), Positives = 57/101 (56%)
Query: 22 RQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGR-FVFLLETRACRPSIKLSSVHAVIIF 80
++++G + R+DG + K+ + FN+ F+F+L ++A + L + + +F
Sbjct: 541 KRKYG---FVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANRLFMF 597
Query: 81 HSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
DW+P ND +A+ R+ D Q + ++RL + T+EEK+L
Sbjct: 598 DPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKIL 638
Score = 46 (21.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 798 DGEVLLRVPEAASSSNCTENFMDSPPGEEQIATVAIS 834
D ++L E C +N PP E T +S
Sbjct: 674 DQKILSDTHEKLKCKRCVQNIQTKPPSESTDCTSHLS 710
WARNING: HSPs involving 107 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 947 921 0.00090 122 3 11 23 0.46 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 357
No. of states in DFA: 625 (66 KB)
Total size of DFA: 430 KB (2207 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 114.07u 0.11s 114.18t Elapsed: 00:00:05
Total cpu time: 114.12u 0.11s 114.23t Elapsed: 00:00:05
Start: Sat May 11 11:19:12 2013 End: Sat May 11 11:19:17 2013
WARNINGS ISSUED: 2