BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047506
(947 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M658|MOM1_ARATH Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1
Length = 2001
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/650 (35%), Positives = 355/650 (54%), Gaps = 86/650 (13%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLS 72
LG+IL+DFV QRFG SYE + SKK +A+ NFN S V LLETRAC +IKL
Sbjct: 593 LGNILEDFVGQRFGPKSYEH---GIYSSKKNSAINNFNKESQCCVLLLETRACSQTIKLL 649
Query: 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDG 132
A I+F S +P +D++ +++I ++ E+ K+FRLYS CTVEEK LILA+Q+K +
Sbjct: 650 RADAFILFGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNK 709
Query: 133 YAQNM-RPMAKFQPLVQATF-------------------FEQTLLNDVVQEFSTILTQNG 172
+N+ R + + A++ FEQ++++ V+ EFS+IL+ G
Sbjct: 710 AVENLNRSLTHALLMWGASYLFDKLDHFHSSETPDSGVSFEQSIMDGVIHEFSSILSSKG 769
Query: 173 EDNDTRKFNIILKVKQSQGTYSTSFPLFGESKVEGMDEERPHIFWTNLLEGKHPCWKYYS 232
+ + K ++L+ K +QGTYS+ LFGE ++ DEE P+IFW+ LL GK+P WKY S
Sbjct: 770 GEENEVKLCLLLEAKHAQGTYSSDSTLFGEDHIKLSDEESPNIFWSKLLGGKNPMWKYPS 829
Query: 233 GSSQGSRKRVQYFDDLQKKPELEIDEVAKKQRRVASNCVNQSSLKPGLE--EGKTVSRDK 290
+ Q +RKRVQYF+ + P+ AKK+++ + + + P ++ E K +D
Sbjct: 830 DTPQRNRKRVQYFEGSEASPKTGDGGNAKKRKKASDDVTDPRVTDPPVDDDERKASGKDH 889
Query: 291 EGT--SVDSSTIHWTCASSST-----------------LVNNFPE---TSRELSYL---- 324
G S T+ +C SS T ++ PE S++ +
Sbjct: 890 MGALESPKVITLQSSCKSSGTDGTLDGNDAFGLYSMGSHISGIPEDMLASQDWGKIPDES 949
Query: 325 QKSLHLLLKPEMAKLCEVLKLREDVKDTVGKFLEYLMINHRVDREPPSMLQAFEISLCWT 384
Q+ LH +LKP+MAKLC+VL L + VG FLEY++ NHR+ EP + QAF+I+L W
Sbjct: 950 QRRLHTVLKPKMAKLCQVLHLSDACTSMVGNFLEYVIENHRIYEEPATTFQAFQIALSWI 1009
Query: 385 AASLRKQKIDHKESLELAKKHLHFSCKKGEADYVYSLLQCLKEVF--------------- 429
AA L KQ + HKESL A L F C + E DY+YS+L C+K +F
Sbjct: 1010 AALLVKQILSHKESLVRANSELAFKCSRVEVDYIYSILSCMKSLFLEHTQGLQFDCFGTN 1069
Query: 430 ----ELSMKDVSKYQSNARLSQSEI---------------VSHRQELFKVAQKDFSRSIR 470
+S K V++ S A + +I R + A +D ++I
Sbjct: 1070 SKQSVVSTKLVNESLSGATVRDEKINTKSMRNSSEDEECMTEKRCSHYSTATRDIEKTIS 1129
Query: 471 GIQKKCQKQMAKLRHKQLEEKKDIDKRYEEQKAQLETKKRTEAAVIRYHCN-GKMQMDKL 529
GI+KK +KQ+ KL + E+K ++ Y ++K +LET K EAAVIR C+ Q+ L
Sbjct: 1130 GIKKKYKKQVQKLVQEHEEKKMELLNMYADKKQKLETSKSVEAAVIRITCSRTSTQVGDL 1189
Query: 530 KVLENEYAEKFKELERDRDVRLENLEALHVASMKKLSDKQTSWVEQVKSW 579
K+L++ Y KF E++ +++ L++LE +H + KKL++ + W+ ++KSW
Sbjct: 1190 KLLDHNYERKFDEIKSEKNECLKSLEQMHDVAKKKLAEDEACWINRIKSW 1239
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
D+L D++++R ++R+DG++ ++ AL +FN GS F FLL TRA I L++
Sbjct: 866 DVLADYLQKRHFP--FQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLAT 923
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VIIF SDW+P NDL+A R Q Q+ ++RL + +VEE+++ AKQ
Sbjct: 924 ADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQ 976
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
D+L+DF+ + YER+DG + + ++ A+ FN G+ +F FLL TRA I L++
Sbjct: 1090 DLLEDFLD--YEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VIIF SDW+P ND++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila
melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+DF+ YER+DG + + ++ A+ FN G+ +FVFLL TRA I L++
Sbjct: 1082 DILEDFLEGE--QYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLAT 1139
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P ND++A R Q ++ ++R + +VEE+V +AK+
Sbjct: 1140 ADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKR 1192
>sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus
GN=CHD1 PE=1 SV=1
Length = 1719
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
DIL ++++ R ++R+DG++ +K AL +FN GS F FLL TRA I L+S
Sbjct: 814 DILAEYLKYR--QFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 871
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
V+IF SDW+P NDL+A R Q +Q+ ++RL + +VEE +L AK+
Sbjct: 872 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKK 924
>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1
PE=1 SV=3
Length = 1711
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
DIL ++++ R ++R+DG++ +K AL +FN GS F FLL TRA I L+S
Sbjct: 816 DILAEYLKYR--QFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 873
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
V+IF SDW+P NDL+A R Q +Q+ ++RL + +VEE +L AK+
Sbjct: 874 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKK 926
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4
PE=1 SV=1
Length = 1915
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
D+L+DF+ YER+DG + + ++ A+ FN G+ +F FLL TRA I L++
Sbjct: 1073 DLLEDFLEHE--GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1130
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P ND++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1131 ADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1183
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1
PE=1 SV=2
Length = 1710
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
DIL ++++ R ++R+DG++ +K AL +FN GS F FLL TRA I L+S
Sbjct: 818 DILAEYLKYR--QFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 875
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
V+IF SDW+P NDL+A R Q +Q+ ++RL + +VEE +L AK+
Sbjct: 876 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKK 928
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4
PE=1 SV=2
Length = 1912
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
D+L+DF+ YER+DG + + ++ A+ FN G+ +F FLL TRA I L++
Sbjct: 1080 DLLEDFLEHE--GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1137
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P ND++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1138 ADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKK 1190
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 30 YERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
++R+DG++ +K AL +FN +GS F FLL TRA I L+S V+IF SDW+P N
Sbjct: 834 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 893
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A R Q +Q+ ++RL + TVEE+++ AK+
Sbjct: 894 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKK 931
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
PE=2 SV=1
Length = 1954
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
D+L+DF+ + YER+DG + ++ A+ FN G+ +F FLL TRA I L++
Sbjct: 1054 DLLEDFLE--YEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1111
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P ND++A R Q +++ ++R + +VEE++ +AK+
Sbjct: 1112 ADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKR 1164
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
SV=2
Length = 1129
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKL 71
L DIL+D+ F + Y R+DG+ + A+ ++N S +FVFLL TRA I L
Sbjct: 530 LLDILEDYCY--FRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINL 587
Query: 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+S V+++ SDW+P DL+A+ R Q +Q+KVFRL + +VEEK+L A Q
Sbjct: 588 TSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQ 642
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLL 60
L C + SL I++D+ R Y R+DG + L+ FN GS F+FLL
Sbjct: 1099 VLLFCQMT--SLMTIMEDYFAYR--GFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 61 ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
TRA + L S VIIF SDW+P DL+A R Q +++V RL + +VEEK+
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1214
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQTLLNDVVQEFSTILTQNGEDNDTRKF 180
L AK Y N+ Q ++QA F+Q + + F + ++ E +++R
Sbjct: 1215 LAAAK-------YKLNVD-----QKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHC 1262
Query: 181 NIILKVKQSQGTYSTSF 197
S G+ S SF
Sbjct: 1263 --------STGSGSASF 1271
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa
subsp. japonica GN=Os01g0367900 PE=2 SV=2
Length = 1107
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKL 71
L DIL+D++ R Y R+DGN + A+++ FN GS +FVFLL TRA I L
Sbjct: 560 LLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINL 617
Query: 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
++ V+++ SDW+P DL+A R Q ++++VFR + T+EEKV+
Sbjct: 618 ATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVI 667
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+DF YER+DG++ +++ A+ +N G+ +FVFLL TRA I L++
Sbjct: 970 DILEDFCD--VEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLAT 1027
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P ND++A R Q ++ ++R + +VEE++ +AK+
Sbjct: 1028 ADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKK 1080
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DI++D + YER+DG+++ ++ A+ +N G+ +F+FLL TRA I L++
Sbjct: 956 DIMEDLCE--YEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLAT 1013
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P ND++A R Q ++ ++R + +VEEK+ +AK+
Sbjct: 1014 ADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKK 1066
>sp|A9X4T1|CHD1_BOMMO Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1
PE=1 SV=1
Length = 1365
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
DIL +++++R ++R+DG++ +K AL +FN GS F FLL TRA I L++
Sbjct: 544 DILAEYLQRRHFP--FQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLAT 601
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VIIF SDW+P NDL+A R Q Q+ ++RL + +VEE ++ AK+
Sbjct: 602 ADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVERAKR 654
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLL 60
L C + SL I++D+ F + Y R+DG + A L+ FN GS F+FLL
Sbjct: 1069 VLLFCQMT--SLMTIMEDYFA--FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1124
Query: 61 ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
TRA + L + V+IF SDW+P DL+A R Q +++V RL + +VEEK+
Sbjct: 1125 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1184
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQ 154
L AK Y N+ Q ++QA F+Q
Sbjct: 1185 LAAAK-------YKLNVD-----QKVIQAGMFDQ 1206
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 16 ILDDFVRQR-FGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
I++D++ R FG Y R+DG + L+ FN GS FVFLL TRA + L +
Sbjct: 1129 IIEDYLGWRQFG---YLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT 1185
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKTPDGY 133
V+IF SDW+P DL+A R Q +++V RL + +VEE++L A+ Y
Sbjct: 1186 ADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAAR-------Y 1238
Query: 134 AQNMRPMAKFQPLVQATFFEQTLLNDVVQEF-STILTQ 170
NM + ++QA F+Q Q+F TIL Q
Sbjct: 1239 KLNMD-----EKVIQAGMFDQKSTGSERQQFLQTILHQ 1271
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLL 60
L C + SL I++D+ F + Y R+DG + A L+ FN GS F+FLL
Sbjct: 1074 VLLFCQMT--SLMTIMEDYFA--FRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1129
Query: 61 ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
TRA + L + V+IF SDW+P DL+A R Q +++V RL + +VEEK+
Sbjct: 1130 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1189
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQ 154
L AK Y N+ Q ++QA F+Q
Sbjct: 1190 LAAAK-------YKLNVD-----QKVIQAGMFDQ 1211
>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila
melanogaster GN=Iswi PE=1 SV=1
Length = 1027
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
DIL+D+ R + +Y R+DG + +Q FN + S +F+F+L TRA I L++
Sbjct: 461 DILEDYCHWR--NYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLAT 518
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
VII+ SDW+P DL+A+ R Q +Q++VFRL + TVEEK++
Sbjct: 519 ADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIV 566
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNF-NNGSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR +YER+DG V + ++AA+ F S RFVFLL TRA I L++
Sbjct: 813 DILEDYLIQR--RYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA 870
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +KV+RL + + E ++
Sbjct: 871 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 918
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1320 DILEDYLIQR--RYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA 1377
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +K++RL + + E ++
Sbjct: 1378 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMF 1425
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1310 DILEDYLIQR--RYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA 1367
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +K++RL + + E ++
Sbjct: 1368 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMF 1415
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1321 DILEDYLIQR--RYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA 1378
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +K++RL + + E ++
Sbjct: 1379 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMF 1426
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLL 60
L C + SL I++D+ R Y R+DG + L+ FN GS F+FLL
Sbjct: 1099 VLLFCQMT--SLMTIMEDYFAYR--GFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 61 ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
TRA + L S VIIF SDW+P DL+A R Q +++V RL + +VEEK+
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1214
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQ 154
L AK Y N+ Q ++QA F+Q
Sbjct: 1215 LAAAK-------YKLNVD-----QKVIQAGMFDQ 1236
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLL 60
L C + SL I++D+ R Y R+DG + L+ FN GS F+FLL
Sbjct: 1099 VLLFCQMT--SLMTIMEDYFAYR--GFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 61 ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
TRA + L S VIIF SDW+P DL+A R Q +++V RL + +VEEK+
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1214
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQ 154
L AK Y N+ Q ++QA F+Q
Sbjct: 1215 LAAAK-------YKLNVD-----QKVIQAGMFDQ 1236
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 2 CLFACSIGGGSLGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLL 60
L C + SL I++D+ R Y R+DG + L+ FN GS F+FLL
Sbjct: 1091 VLLFCQMT--SLMTIMEDYFAYR--GFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1146
Query: 61 ETRACRPSIKLSSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
TRA + L S VIIF SDW+P DL+A R Q +++V RL + +VEEK+
Sbjct: 1147 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1206
Query: 121 LILAKQDKTPDGYAQNMRPMAKFQPLVQATFFEQ 154
L AK Y N+ Q ++QA F+Q
Sbjct: 1207 LAAAK-------YKLNVD-----QKVIQAGMFDQ 1228
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1163 DILEDYLIQR--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA 1220
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +KV+RL + + E ++
Sbjct: 1221 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 1268
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1165 DILEDYLIQR--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA 1222
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +KV+RL + + E ++
Sbjct: 1223 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 1270
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1163 DILEDYLIQR--RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA 1220
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +KV+RL + + E ++
Sbjct: 1221 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 1268
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL+D++ QR YER+DG V + ++AA+ F+ S RFVFLL TRA I L++
Sbjct: 1107 DILEDYLIQR--RYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA 1164
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
IIF SDW+P NDL+A R Q + +K++RL + + E ++
Sbjct: 1165 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMF 1212
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKL 71
L DIL+D++ R Y R+DGN ++ A+++ +N GS +FVFLL TRA I L
Sbjct: 518 LLDILEDYLMYR--GYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINL 575
Query: 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
++ VI++ SDW+P DL+A R Q ++++VFR + +EEKV+
Sbjct: 576 ATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVI 625
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL D++ + +++R+DG V ++++ ++ +FN+ S FVFLL TRA I L +
Sbjct: 725 DILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 782
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
V+IF SDW+P DL+A+ R Q + V+RL S TVEE+VL A++
Sbjct: 783 ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 835
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis
thaliana GN=PKL PE=1 SV=1
Length = 1384
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFN-NGSGRFVFLLETRACRPSIKLSS 73
D+L+D+ + YER+DG V ++++ + FN S +F FLL TRA I L++
Sbjct: 625 DLLEDYCTHK--KWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLAT 682
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VII+ SDW+P DL+A+ R Q ++ ++RL + T+EE+++ L K+
Sbjct: 683 ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKK 735
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Query: 15 DILDDF-VRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLS 72
DIL+D+ + +R+ YER+DG V + ++AA+ F+ S RFVFLL TRA I L+
Sbjct: 1200 DILEDYLIHKRY---LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 1256
Query: 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+ +IF SDW+P NDL+A R Q + +KV+RL + + E ++L
Sbjct: 1257 AADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREML 1305
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 15 DILDDF-VRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLS 72
DIL+D+ + +R+ YER+DG V + ++AA+ F+ S RFVFLL TRA I L+
Sbjct: 1212 DILEDYLIHKRY---LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 1268
Query: 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+ IIF SDW+P NDL+A R Q + +KV+RL + + E ++
Sbjct: 1269 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMF 1317
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 15 DILDDF-VRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLS 72
DIL+D+ + +R+ YER+DG V + ++AA+ F+ S RFVFLL TRA I L+
Sbjct: 1211 DILEDYLIHKRY---LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 1267
Query: 73 SVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+ IIF SDW+P NDL+A R Q + +KV+RL + + E ++
Sbjct: 1268 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMF 1316
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 30 YERVDGNVLDSKKKAALQNFNNG-SGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPVN 88
Y+R+DG++ ++ A+ FN+ S FVFLL TRA I L++ VIIF SDW+P N
Sbjct: 629 YDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHN 688
Query: 89 DLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
D++A R Q +++ ++R + +VEE+++ +AK
Sbjct: 689 DVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKH 726
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKL 71
L DIL+D+ R Y R+DG +++ A+ FN S +F+F+L TRA I L
Sbjct: 518 LLDILEDYCMWR--GYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL 575
Query: 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
+S VI++ SDW+P DL+A+ R Q + ++VFRL + TVEE+++
Sbjct: 576 ASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 625
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74
D+L++++ R +Y R+DG+ S+++ + +F N + FVFLL TRA I L++
Sbjct: 1131 DLLEEYMVYR--KHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAA 1188
Query: 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VI + SDW+P D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1189 DTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1240
>sp|Q8RXS6|INO80_ARATH DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2
Length = 1507
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74
+IL+D++ R Y R+DG+ ++ +++F + S FVFLL TRA I L++
Sbjct: 1236 NILEDYMNYR--KYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAA 1293
Query: 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQDKT 129
VI + SDW+P DL+A+ R Q + + V+RL TVEEK+L A Q T
Sbjct: 1294 DTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNT 1348
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
D+L+DF R Y R+DG+ + A++ +N S +F+F+L TRA I L++
Sbjct: 465 DLLEDFCWWRHYE--YCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLAT 522
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVL 121
VII+ SDW+P +DL+A+ R Q +Q++VFRL + TV+E+++
Sbjct: 523 ADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERII 570
>sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp3 PE=1 SV=1
Length = 1388
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSS 73
DIL D++ R ++R+DG V + ++ ++ +FN S FVFLL TRA I L +
Sbjct: 720 DILGDYLSLR--GYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMT 777
Query: 74 VHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VIIF SDW+P DL+A+ R Q + V+RL S T+EE VL A++
Sbjct: 778 ADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARR 830
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 29 SYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKLSSVHAVIIFHSDWSPV 87
+Y+R+DG + S ++ ++ +FN S FVFLL TRA I L++ VIIF SDW+P
Sbjct: 746 NYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQ 805
Query: 88 NDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
DL+A+ R Q + V+R S TVEE +L A++
Sbjct: 806 ADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARR 844
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 13 LGDILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNN-GSGRFVFLLETRACRPSIKL 71
L DIL+D+ F Y R+DG+ ++ A+ +N S +FVFLL TRA I L
Sbjct: 518 LLDILEDYCY--FRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL 575
Query: 72 SSVHAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
+ VI+F SDW+P DL+A+ R Q +Q+ V+R + +EEKV+ A Q
Sbjct: 576 VTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQ 630
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74
DIL D++ R SYERVDG+V ++ A++NF N FVFLL TRA + L++
Sbjct: 371 DILQDYMDYR--GYSYERVDGSVRGEERHLAIKNFGN-QPIFVFLLSTRAGGVGMNLTAA 427
Query: 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
VI SD++P NDL+A R Q + +KV RL TVEE V
Sbjct: 428 DTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 473
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74
D+L++++ R +Y R+DG+ S+++ + +F + FVFLL TRA I L++
Sbjct: 1134 DLLEEYMVYR--KHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAA 1191
Query: 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VI + SDW+P D +A+ R Q +Q+ V+RL T+EE++L AK+
Sbjct: 1192 DTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1243
>sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus
GN=CHD1L PE=2 SV=1
Length = 897
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74
DIL D++ R SYERVDG+V ++ A++NF F FLL TRA + L++
Sbjct: 379 DILQDYLDYR--GYSYERVDGSVRGEERHLAIKNFGQ-QPIFTFLLSTRAGGVGMNLTAA 435
Query: 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKV 120
VI F SD++P NDL+A R Q + +KV RL TVEE V
Sbjct: 436 DTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 481
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1
SV=2
Length = 1638
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 15 DILDDFVRQRFGSDSYERVDGNVLDSKKKAALQNFNNGSGRFVFLLETRACRPSIKLSSV 74
D+L++++ R Y R+DG+ S ++ + +F + FVFLL TRA I L++
Sbjct: 1186 DLLEEYMWHR--KHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAA 1243
Query: 75 HAVIIFHSDWSPVNDLRALQRITLDPQLEQIKVFRLYSFCTVEEKVLILAKQ 126
VI + SDW+P D +A+ R Q +Q+ V+RL T+EE++L A++
Sbjct: 1244 DTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRARE 1295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,012,061
Number of Sequences: 539616
Number of extensions: 15177029
Number of successful extensions: 42007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 614
Number of HSP's that attempted gapping in prelim test: 40450
Number of HSP's gapped (non-prelim): 1882
length of query: 947
length of database: 191,569,459
effective HSP length: 127
effective length of query: 820
effective length of database: 123,038,227
effective search space: 100891346140
effective search space used: 100891346140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)